Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23077.t1 | XP_013450245.1 | 92.1 | 315 | 13 | 1 | 1 | 303 | 1 | 315 | 1.00E-163 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23077.t1 | Q58D06 | 37.0 | 138 | 82 | 4 | 168 | 303 | 149 | 283 | 9.3e-20 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23077.t1 | A0A072U548 | 92.1 | 315 | 13 | 1 | 1 | 303 | 1 | 315 | 7.5e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055424 | MS.gene23077 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene23077 | 0.816879 | 4.40E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23077.t1 | MTR_7g106650 | 92.063 | 315 | 13 | 1 | 1 | 303 | 1 | 315 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23077.t1 | AT1G29320 | 53.731 | 335 | 135 | 2 | 1 | 315 | 1 | 335 | 9.44e-120 | 355 |
| MS.gene23077.t1 | AT1G29320 | 53.731 | 335 | 135 | 2 | 1 | 315 | 1 | 335 | 1.12e-119 | 355 |
Find 90 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAGAAGTTTGCTTTAT+TGG | 0.150947 | 7.2:-7394176 | MS.gene23077:CDS |
| AAGGCGTTGAAGTTAATATT+TGG | 0.160856 | 7.2:-7393454 | MS.gene23077:CDS |
| TCTGAAGAGAATAATGTTAT+TGG | 0.190952 | 7.2:-7396532 | MS.gene23077:CDS |
| CTAACCTTCAACAATGAAAT+TGG | 0.239759 | 7.2:+7390281 | None:intergenic |
| AATGAGAAGTTTGCTTTATT+GGG | 0.243285 | 7.2:-7394175 | MS.gene23077:CDS |
| GATTGTAGGAGGTTACTTTA+TGG | 0.268481 | 7.2:-7389406 | MS.gene23077:CDS |
| TCCTCAGCCAGTGCTTTAAT+TGG | 0.277599 | 7.2:+7392073 | None:intergenic |
| TGGATTCAAACTCAAGATTC+TGG | 0.297251 | 7.2:+7396491 | None:intergenic |
| TAAAAGTACCTGATGGTTAT+TGG | 0.322979 | 7.2:+7393162 | None:intergenic |
| GGATGGCTATTTACGACTTT+GGG | 0.333336 | 7.2:-7391005 | MS.gene23077:CDS |
| ACATGGAATGTTTGTAATAG+TGG | 0.343017 | 7.2:-7394226 | MS.gene23077:CDS |
| AGGCGTTGAAGTTAATATTT+GGG | 0.363980 | 7.2:-7393453 | MS.gene23077:CDS |
| GAAGATCCTGTCGCTGAATC+AGG | 0.366839 | 7.2:+7394268 | None:intergenic |
| GATGGCAACACAATCTATCT+AGG | 0.371926 | 7.2:-7392046 | MS.gene23077:CDS |
| TTGATAACTGCACGAAGATC+TGG | 0.374516 | 7.2:-7393427 | MS.gene23077:CDS |
| GGGTTCATGGCTCACAGATT+TGG | 0.379867 | 7.2:+7393400 | None:intergenic |
| GATTCCAATTTCATTGTTGA+AGG | 0.393194 | 7.2:-7390285 | MS.gene23077:intron |
| TGGCAGTTGGATCAGATTGT+AGG | 0.399939 | 7.2:-7389420 | MS.gene23077:CDS |
| TGGATGGCTATTTACGACTT+TGG | 0.400867 | 7.2:-7391006 | MS.gene23077:CDS |
| GACCATCGAAAATTTGTTGC+TGG | 0.414825 | 7.2:-7393187 | MS.gene23077:CDS |
| TTCGAGCAGGAGTTTGTGTT+TGG | 0.426729 | 7.2:-7389440 | MS.gene23077:CDS |
| TTACTAGGATGGTTAGTTTG+TGG | 0.433912 | 7.2:-7389378 | MS.gene23077:CDS |
| TACTTTATGGTGAAGTTACT+AGG | 0.443092 | 7.2:-7389393 | MS.gene23077:CDS |
| TTATAATTTACTTACATGTA+CGG | 0.443505 | 7.2:-7394326 | MS.gene23077:CDS |
| GTTAGCGGACTTAGTTGAAT+CGG | 0.453016 | 7.2:+7397116 | None:intergenic |
| CATGCAGAATAGGCTGCTTA+AGG | 0.458100 | 7.2:+7390316 | None:intergenic |
| GAAGCTACCACAGGTAGCTC+AGG | 0.460028 | 7.2:+7391388 | None:intergenic |
| GAAGTTCCTGATTCAGCGAC+AGG | 0.460401 | 7.2:-7394274 | MS.gene23077:CDS |
| TATAATTTACTTACATGTAC+GGG | 0.462972 | 7.2:-7394325 | MS.gene23077:CDS |
| CGAAAATCAATAGAGAGAAC+AGG | 0.464845 | 7.2:+7392103 | None:intergenic |
| ACCCCACCTATCTACTACCT+TGG | 0.469187 | 7.2:+7397143 | None:intergenic |
| TCTGAGCAGATATGTCATAA+AGG | 0.472800 | 7.2:+7392131 | None:intergenic |
| TACTTACATGTACGGGCAAA+GGG | 0.477939 | 7.2:-7394318 | MS.gene23077:CDS |
| GCTAGAGAAACTCCAGTGAC+AGG | 0.483353 | 7.2:+7396589 | None:intergenic |
| AGGAGTTTGTGTTTGGCAGT+TGG | 0.483672 | 7.2:-7389433 | MS.gene23077:CDS |
| TTAGCGGACTTAGTTGAATC+GGG | 0.486942 | 7.2:+7397117 | None:intergenic |
| GCAAAGGGAATGCAAGCATA+AGG | 0.487266 | 7.2:-7394303 | MS.gene23077:CDS |
| CCCCACCTATCTACTACCTT+GGG | 0.490032 | 7.2:+7397144 | None:intergenic |
| TCCACTTCGAGCTTTAACCT+TGG | 0.493901 | 7.2:-7397285 | MS.gene23077:CDS |
| GCTCGAAGTGGAGGACAACC+AGG | 0.493991 | 7.2:+7397296 | None:intergenic |
| AACACAATCTATCTAGGGAA+TGG | 0.494679 | 7.2:-7392040 | MS.gene23077:CDS |
| TTACTTACATGTACGGGCAA+AGG | 0.498260 | 7.2:-7394319 | MS.gene23077:CDS |
| AATGAGTGAAACAGCGTTAG+CGG | 0.502010 | 7.2:+7397101 | None:intergenic |
| GAAGCATCAGATCCATTGTC+AGG | 0.503948 | 7.2:-7391414 | MS.gene23077:CDS |
| ATCTATCTAGGGAATGGGTC+TGG | 0.511093 | 7.2:-7392034 | MS.gene23077:CDS |
| ACCAATTAAAGCACTGGCTG+AGG | 0.513210 | 7.2:-7392074 | MS.gene23077:CDS |
| TCGCTGAATCAGGAACTTCA+AGG | 0.514181 | 7.2:+7394278 | None:intergenic |
| GCTTTAACCTTGGACACACT+TGG | 0.521571 | 7.2:-7397275 | MS.gene23077:intron |
| ACACAATCTATCTAGGGAAT+GGG | 0.530689 | 7.2:-7392039 | MS.gene23077:CDS |
| AGAAGTTTGCTTTATTGGGA+GGG | 0.537325 | 7.2:-7394171 | MS.gene23077:intron |
| TTAAATATAGGTAAAATGCT+AGG | 0.537553 | 7.2:-7391460 | MS.gene23077:intron |
| TGCTGGCACCAATAACCATC+AGG | 0.540640 | 7.2:-7393170 | MS.gene23077:intron |
| AGGGAATGGGTCTGGTGACA+TGG | 0.542984 | 7.2:-7392026 | MS.gene23077:CDS |
| GATAAGACCAAGTGTGTCCA+AGG | 0.547203 | 7.2:+7397268 | None:intergenic |
| TTATGGTGAAGTTACTAGGA+TGG | 0.550902 | 7.2:-7389389 | MS.gene23077:CDS |
| TAGCTCAGGGTGCCTGACAA+TGG | 0.550961 | 7.2:+7391402 | None:intergenic |
| GAGAAGTTTGCTTTATTGGG+AGG | 0.552649 | 7.2:-7394172 | MS.gene23077:CDS |
| GAGGTCCCAAGGTAGTAGAT+AGG | 0.555775 | 7.2:-7397149 | MS.gene23077:CDS |
| TTGATATATTCACACCTACC+TGG | 0.557164 | 7.2:-7393240 | MS.gene23077:CDS |
| CAGTTGGATCAGATTGTAGG+AGG | 0.558329 | 7.2:-7389417 | MS.gene23077:CDS |
| TCCCAAGGTAGTAGATAGGT+GGG | 0.565727 | 7.2:-7397145 | MS.gene23077:CDS |
| GCTTCTGTTGATATACGTAC+AGG | 0.571055 | 7.2:-7392004 | MS.gene23077:intron |
| GCACTGGCTGAGGATATAGA+TGG | 0.571687 | 7.2:-7392064 | MS.gene23077:CDS |
| AGGTAGGTGTGAATATATCA+AGG | 0.573013 | 7.2:+7393242 | None:intergenic |
| GGTATTGCAGTTATTAGCTG+TGG | 0.574259 | 7.2:-7396751 | MS.gene23077:intron |
| TGAGACACCAATTAAAGCAC+TGG | 0.576460 | 7.2:-7392080 | MS.gene23077:CDS |
| AAGAAGAAAACGTACCGGGT+TGG | 0.576937 | 7.2:+7397068 | None:intergenic |
| GCTACCACTGTAGAGTGCCC+TGG | 0.577472 | 7.2:-7397314 | MS.gene23077:CDS |
| AGAATCTTGAGTTTGAATCC+AGG | 0.582034 | 7.2:-7396489 | MS.gene23077:intron |
| GTCCCAAGGTAGTAGATAGG+TGG | 0.586983 | 7.2:-7397146 | MS.gene23077:CDS |
| ATGGCAACACAATCTATCTA+GGG | 0.590346 | 7.2:-7392045 | MS.gene23077:CDS |
| CGCTGAATCAGGAACTTCAA+GGG | 0.591335 | 7.2:+7394279 | None:intergenic |
| CTAGAGAAACTCCAGTGACA+GGG | 0.603489 | 7.2:+7396590 | None:intergenic |
| ATATGAAACAGATGTGAACC+AGG | 0.611012 | 7.2:+7393222 | None:intergenic |
| AGACTGAAGATCTAAATCGT+TGG | 0.613670 | 7.2:+7396552 | None:intergenic |
| AAGGTTAAAGCTCGAAGTGG+AGG | 0.619172 | 7.2:+7397287 | None:intergenic |
| AAGGTGGTAAAAGTTCGAGC+AGG | 0.623070 | 7.2:-7389453 | MS.gene23077:CDS |
| CATTGATCGCAAATCCAACC+CGG | 0.624320 | 7.2:-7397082 | MS.gene23077:intron |
| CACTCTACAGTGGTAGCTCG+AGG | 0.631494 | 7.2:+7397320 | None:intergenic |
| CAGGCACCCTGAGCTACCTG+TGG | 0.634317 | 7.2:-7391395 | MS.gene23077:intron |
| AAGCTACCACAGGTAGCTCA+GGG | 0.640900 | 7.2:+7391389 | None:intergenic |
| TCCAAGGTTAAAGCTCGAAG+TGG | 0.641170 | 7.2:+7397284 | None:intergenic |
| GAAACAGATGTGAACCAGGT+AGG | 0.656614 | 7.2:+7393226 | None:intergenic |
| TGGTAACGTCTTGTGTTGCA+AGG | 0.665311 | 7.2:-7394206 | MS.gene23077:CDS |
| CCCAAGGTAGTAGATAGGTG+GGG | 0.685917 | 7.2:-7397144 | MS.gene23077:CDS |
| ACAACCAGGGCACTCTACAG+TGG | 0.689442 | 7.2:+7397310 | None:intergenic |
| GACTTTGGGATACAAAGACA+AGG | 0.696742 | 7.2:-7390991 | MS.gene23077:CDS |
| CTCGAAGTGGAGGACAACCA+GGG | 0.703889 | 7.2:+7397297 | None:intergenic |
| TTTATGACATATCTGCTCAG+AGG | 0.715403 | 7.2:-7392129 | MS.gene23077:CDS |
| TAACGTCTTGTGTTGCAAGG+TGG | 0.722177 | 7.2:-7394203 | MS.gene23077:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7389359 | 7397345 | 7389359 | ID=MS.gene23077 |
| chr7.2 | mRNA | 7389359 | 7397345 | 7389359 | ID=MS.gene23077.t1;Parent=MS.gene23077 |
| chr7.2 | exon | 7397276 | 7397345 | 7397276 | ID=MS.gene23077.t1.exon1;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7397276 | 7397345 | 7397276 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7397083 | 7397171 | 7397083 | ID=MS.gene23077.t1.exon2;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7397083 | 7397171 | 7397083 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7396734 | 7396763 | 7396734 | ID=MS.gene23077.t1.exon3;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7396734 | 7396763 | 7396734 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7396490 | 7396626 | 7396490 | ID=MS.gene23077.t1.exon4;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7396490 | 7396626 | 7396490 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7394172 | 7394351 | 7394172 | ID=MS.gene23077.t1.exon5;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7394172 | 7394351 | 7394172 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7393415 | 7393478 | 7393415 | ID=MS.gene23077.t1.exon6;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7393415 | 7393478 | 7393415 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7393171 | 7393278 | 7393171 | ID=MS.gene23077.t1.exon7;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7393171 | 7393278 | 7393171 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7392005 | 7392158 | 7392005 | ID=MS.gene23077.t1.exon8;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7392005 | 7392158 | 7392005 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7391396 | 7391472 | 7391396 | ID=MS.gene23077.t1.exon9;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7391396 | 7391472 | 7391396 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7390976 | 7391031 | 7390976 | ID=MS.gene23077.t1.exon10;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7390976 | 7391031 | 7390976 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7390286 | 7390343 | 7390286 | ID=MS.gene23077.t1.exon11;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7390286 | 7390343 | 7390286 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| chr7.2 | exon | 7389359 | 7389472 | 7389359 | ID=MS.gene23077.t1.exon12;Parent=MS.gene23077.t1 |
| chr7.2 | CDS | 7389359 | 7389472 | 7389359 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
| Gene Sequence |
| Protein sequence |