Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23077.t1 | XP_013450245.1 | 92.1 | 315 | 13 | 1 | 1 | 303 | 1 | 315 | 1.00E-163 | 586.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23077.t1 | Q58D06 | 37.0 | 138 | 82 | 4 | 168 | 303 | 149 | 283 | 9.3e-20 | 99.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23077.t1 | A0A072U548 | 92.1 | 315 | 13 | 1 | 1 | 303 | 1 | 315 | 7.5e-164 | 586.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055424 | MS.gene23077 | 0.812208 | 4.76E-51 | -1.69E-46 |
MS.gene057094 | MS.gene23077 | 0.816879 | 4.40E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23077.t1 | MTR_7g106650 | 92.063 | 315 | 13 | 1 | 1 | 303 | 1 | 315 | 0.0 | 595 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23077.t1 | AT1G29320 | 53.731 | 335 | 135 | 2 | 1 | 315 | 1 | 335 | 9.44e-120 | 355 |
MS.gene23077.t1 | AT1G29320 | 53.731 | 335 | 135 | 2 | 1 | 315 | 1 | 335 | 1.12e-119 | 355 |
Find 90 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGAGAAGTTTGCTTTAT+TGG | 0.150947 | 7.2:-7394176 | MS.gene23077:CDS |
AAGGCGTTGAAGTTAATATT+TGG | 0.160856 | 7.2:-7393454 | MS.gene23077:CDS |
TCTGAAGAGAATAATGTTAT+TGG | 0.190952 | 7.2:-7396532 | MS.gene23077:CDS |
CTAACCTTCAACAATGAAAT+TGG | 0.239759 | 7.2:+7390281 | None:intergenic |
AATGAGAAGTTTGCTTTATT+GGG | 0.243285 | 7.2:-7394175 | MS.gene23077:CDS |
GATTGTAGGAGGTTACTTTA+TGG | 0.268481 | 7.2:-7389406 | MS.gene23077:CDS |
TCCTCAGCCAGTGCTTTAAT+TGG | 0.277599 | 7.2:+7392073 | None:intergenic |
TGGATTCAAACTCAAGATTC+TGG | 0.297251 | 7.2:+7396491 | None:intergenic |
TAAAAGTACCTGATGGTTAT+TGG | 0.322979 | 7.2:+7393162 | None:intergenic |
GGATGGCTATTTACGACTTT+GGG | 0.333336 | 7.2:-7391005 | MS.gene23077:CDS |
ACATGGAATGTTTGTAATAG+TGG | 0.343017 | 7.2:-7394226 | MS.gene23077:CDS |
AGGCGTTGAAGTTAATATTT+GGG | 0.363980 | 7.2:-7393453 | MS.gene23077:CDS |
GAAGATCCTGTCGCTGAATC+AGG | 0.366839 | 7.2:+7394268 | None:intergenic |
GATGGCAACACAATCTATCT+AGG | 0.371926 | 7.2:-7392046 | MS.gene23077:CDS |
TTGATAACTGCACGAAGATC+TGG | 0.374516 | 7.2:-7393427 | MS.gene23077:CDS |
GGGTTCATGGCTCACAGATT+TGG | 0.379867 | 7.2:+7393400 | None:intergenic |
GATTCCAATTTCATTGTTGA+AGG | 0.393194 | 7.2:-7390285 | MS.gene23077:intron |
TGGCAGTTGGATCAGATTGT+AGG | 0.399939 | 7.2:-7389420 | MS.gene23077:CDS |
TGGATGGCTATTTACGACTT+TGG | 0.400867 | 7.2:-7391006 | MS.gene23077:CDS |
GACCATCGAAAATTTGTTGC+TGG | 0.414825 | 7.2:-7393187 | MS.gene23077:CDS |
TTCGAGCAGGAGTTTGTGTT+TGG | 0.426729 | 7.2:-7389440 | MS.gene23077:CDS |
TTACTAGGATGGTTAGTTTG+TGG | 0.433912 | 7.2:-7389378 | MS.gene23077:CDS |
TACTTTATGGTGAAGTTACT+AGG | 0.443092 | 7.2:-7389393 | MS.gene23077:CDS |
TTATAATTTACTTACATGTA+CGG | 0.443505 | 7.2:-7394326 | MS.gene23077:CDS |
GTTAGCGGACTTAGTTGAAT+CGG | 0.453016 | 7.2:+7397116 | None:intergenic |
CATGCAGAATAGGCTGCTTA+AGG | 0.458100 | 7.2:+7390316 | None:intergenic |
GAAGCTACCACAGGTAGCTC+AGG | 0.460028 | 7.2:+7391388 | None:intergenic |
GAAGTTCCTGATTCAGCGAC+AGG | 0.460401 | 7.2:-7394274 | MS.gene23077:CDS |
TATAATTTACTTACATGTAC+GGG | 0.462972 | 7.2:-7394325 | MS.gene23077:CDS |
CGAAAATCAATAGAGAGAAC+AGG | 0.464845 | 7.2:+7392103 | None:intergenic |
ACCCCACCTATCTACTACCT+TGG | 0.469187 | 7.2:+7397143 | None:intergenic |
TCTGAGCAGATATGTCATAA+AGG | 0.472800 | 7.2:+7392131 | None:intergenic |
TACTTACATGTACGGGCAAA+GGG | 0.477939 | 7.2:-7394318 | MS.gene23077:CDS |
GCTAGAGAAACTCCAGTGAC+AGG | 0.483353 | 7.2:+7396589 | None:intergenic |
AGGAGTTTGTGTTTGGCAGT+TGG | 0.483672 | 7.2:-7389433 | MS.gene23077:CDS |
TTAGCGGACTTAGTTGAATC+GGG | 0.486942 | 7.2:+7397117 | None:intergenic |
GCAAAGGGAATGCAAGCATA+AGG | 0.487266 | 7.2:-7394303 | MS.gene23077:CDS |
CCCCACCTATCTACTACCTT+GGG | 0.490032 | 7.2:+7397144 | None:intergenic |
TCCACTTCGAGCTTTAACCT+TGG | 0.493901 | 7.2:-7397285 | MS.gene23077:CDS |
GCTCGAAGTGGAGGACAACC+AGG | 0.493991 | 7.2:+7397296 | None:intergenic |
AACACAATCTATCTAGGGAA+TGG | 0.494679 | 7.2:-7392040 | MS.gene23077:CDS |
TTACTTACATGTACGGGCAA+AGG | 0.498260 | 7.2:-7394319 | MS.gene23077:CDS |
AATGAGTGAAACAGCGTTAG+CGG | 0.502010 | 7.2:+7397101 | None:intergenic |
GAAGCATCAGATCCATTGTC+AGG | 0.503948 | 7.2:-7391414 | MS.gene23077:CDS |
ATCTATCTAGGGAATGGGTC+TGG | 0.511093 | 7.2:-7392034 | MS.gene23077:CDS |
ACCAATTAAAGCACTGGCTG+AGG | 0.513210 | 7.2:-7392074 | MS.gene23077:CDS |
TCGCTGAATCAGGAACTTCA+AGG | 0.514181 | 7.2:+7394278 | None:intergenic |
GCTTTAACCTTGGACACACT+TGG | 0.521571 | 7.2:-7397275 | MS.gene23077:intron |
ACACAATCTATCTAGGGAAT+GGG | 0.530689 | 7.2:-7392039 | MS.gene23077:CDS |
AGAAGTTTGCTTTATTGGGA+GGG | 0.537325 | 7.2:-7394171 | MS.gene23077:intron |
TTAAATATAGGTAAAATGCT+AGG | 0.537553 | 7.2:-7391460 | MS.gene23077:intron |
TGCTGGCACCAATAACCATC+AGG | 0.540640 | 7.2:-7393170 | MS.gene23077:intron |
AGGGAATGGGTCTGGTGACA+TGG | 0.542984 | 7.2:-7392026 | MS.gene23077:CDS |
GATAAGACCAAGTGTGTCCA+AGG | 0.547203 | 7.2:+7397268 | None:intergenic |
TTATGGTGAAGTTACTAGGA+TGG | 0.550902 | 7.2:-7389389 | MS.gene23077:CDS |
TAGCTCAGGGTGCCTGACAA+TGG | 0.550961 | 7.2:+7391402 | None:intergenic |
GAGAAGTTTGCTTTATTGGG+AGG | 0.552649 | 7.2:-7394172 | MS.gene23077:CDS |
GAGGTCCCAAGGTAGTAGAT+AGG | 0.555775 | 7.2:-7397149 | MS.gene23077:CDS |
TTGATATATTCACACCTACC+TGG | 0.557164 | 7.2:-7393240 | MS.gene23077:CDS |
CAGTTGGATCAGATTGTAGG+AGG | 0.558329 | 7.2:-7389417 | MS.gene23077:CDS |
TCCCAAGGTAGTAGATAGGT+GGG | 0.565727 | 7.2:-7397145 | MS.gene23077:CDS |
GCTTCTGTTGATATACGTAC+AGG | 0.571055 | 7.2:-7392004 | MS.gene23077:intron |
GCACTGGCTGAGGATATAGA+TGG | 0.571687 | 7.2:-7392064 | MS.gene23077:CDS |
AGGTAGGTGTGAATATATCA+AGG | 0.573013 | 7.2:+7393242 | None:intergenic |
GGTATTGCAGTTATTAGCTG+TGG | 0.574259 | 7.2:-7396751 | MS.gene23077:intron |
TGAGACACCAATTAAAGCAC+TGG | 0.576460 | 7.2:-7392080 | MS.gene23077:CDS |
AAGAAGAAAACGTACCGGGT+TGG | 0.576937 | 7.2:+7397068 | None:intergenic |
GCTACCACTGTAGAGTGCCC+TGG | 0.577472 | 7.2:-7397314 | MS.gene23077:CDS |
AGAATCTTGAGTTTGAATCC+AGG | 0.582034 | 7.2:-7396489 | MS.gene23077:intron |
GTCCCAAGGTAGTAGATAGG+TGG | 0.586983 | 7.2:-7397146 | MS.gene23077:CDS |
ATGGCAACACAATCTATCTA+GGG | 0.590346 | 7.2:-7392045 | MS.gene23077:CDS |
CGCTGAATCAGGAACTTCAA+GGG | 0.591335 | 7.2:+7394279 | None:intergenic |
CTAGAGAAACTCCAGTGACA+GGG | 0.603489 | 7.2:+7396590 | None:intergenic |
ATATGAAACAGATGTGAACC+AGG | 0.611012 | 7.2:+7393222 | None:intergenic |
AGACTGAAGATCTAAATCGT+TGG | 0.613670 | 7.2:+7396552 | None:intergenic |
AAGGTTAAAGCTCGAAGTGG+AGG | 0.619172 | 7.2:+7397287 | None:intergenic |
AAGGTGGTAAAAGTTCGAGC+AGG | 0.623070 | 7.2:-7389453 | MS.gene23077:CDS |
CATTGATCGCAAATCCAACC+CGG | 0.624320 | 7.2:-7397082 | MS.gene23077:intron |
CACTCTACAGTGGTAGCTCG+AGG | 0.631494 | 7.2:+7397320 | None:intergenic |
CAGGCACCCTGAGCTACCTG+TGG | 0.634317 | 7.2:-7391395 | MS.gene23077:intron |
AAGCTACCACAGGTAGCTCA+GGG | 0.640900 | 7.2:+7391389 | None:intergenic |
TCCAAGGTTAAAGCTCGAAG+TGG | 0.641170 | 7.2:+7397284 | None:intergenic |
GAAACAGATGTGAACCAGGT+AGG | 0.656614 | 7.2:+7393226 | None:intergenic |
TGGTAACGTCTTGTGTTGCA+AGG | 0.665311 | 7.2:-7394206 | MS.gene23077:CDS |
CCCAAGGTAGTAGATAGGTG+GGG | 0.685917 | 7.2:-7397144 | MS.gene23077:CDS |
ACAACCAGGGCACTCTACAG+TGG | 0.689442 | 7.2:+7397310 | None:intergenic |
GACTTTGGGATACAAAGACA+AGG | 0.696742 | 7.2:-7390991 | MS.gene23077:CDS |
CTCGAAGTGGAGGACAACCA+GGG | 0.703889 | 7.2:+7397297 | None:intergenic |
TTTATGACATATCTGCTCAG+AGG | 0.715403 | 7.2:-7392129 | MS.gene23077:CDS |
TAACGTCTTGTGTTGCAAGG+TGG | 0.722177 | 7.2:-7394203 | MS.gene23077:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 7389359 | 7397345 | 7389359 | ID=MS.gene23077 |
chr7.2 | mRNA | 7389359 | 7397345 | 7389359 | ID=MS.gene23077.t1;Parent=MS.gene23077 |
chr7.2 | exon | 7397276 | 7397345 | 7397276 | ID=MS.gene23077.t1.exon1;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7397276 | 7397345 | 7397276 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7397083 | 7397171 | 7397083 | ID=MS.gene23077.t1.exon2;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7397083 | 7397171 | 7397083 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7396734 | 7396763 | 7396734 | ID=MS.gene23077.t1.exon3;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7396734 | 7396763 | 7396734 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7396490 | 7396626 | 7396490 | ID=MS.gene23077.t1.exon4;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7396490 | 7396626 | 7396490 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7394172 | 7394351 | 7394172 | ID=MS.gene23077.t1.exon5;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7394172 | 7394351 | 7394172 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7393415 | 7393478 | 7393415 | ID=MS.gene23077.t1.exon6;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7393415 | 7393478 | 7393415 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7393171 | 7393278 | 7393171 | ID=MS.gene23077.t1.exon7;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7393171 | 7393278 | 7393171 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7392005 | 7392158 | 7392005 | ID=MS.gene23077.t1.exon8;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7392005 | 7392158 | 7392005 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7391396 | 7391472 | 7391396 | ID=MS.gene23077.t1.exon9;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7391396 | 7391472 | 7391396 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7390976 | 7391031 | 7390976 | ID=MS.gene23077.t1.exon10;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7390976 | 7391031 | 7390976 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7390286 | 7390343 | 7390286 | ID=MS.gene23077.t1.exon11;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7390286 | 7390343 | 7390286 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
chr7.2 | exon | 7389359 | 7389472 | 7389359 | ID=MS.gene23077.t1.exon12;Parent=MS.gene23077.t1 |
chr7.2 | CDS | 7389359 | 7389472 | 7389359 | ID=cds.MS.gene23077.t1;Parent=MS.gene23077.t1 |
Gene Sequence |
Protein sequence |