AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057094


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057094.t1 MTR_5g091135 100.000 117 0 0 1 117 1 117 2.03e-84 247
MS.gene057094.t1 MTR_5g091120 100.000 117 0 0 1 117 1 117 2.03e-84 247
MS.gene057094.t1 MTR_2g098000 100.000 117 0 0 1 117 1 117 2.03e-84 247
MS.gene057094.t1 MTR_3g046320 95.726 117 5 0 1 117 1 117 3.14e-80 236
MS.gene057094.t1 MTR_3g046320 97.345 113 3 0 5 117 3 115 4.79e-79 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057094.t1 AT2G34480 92.035 113 9 0 5 117 44 156 9.59e-75 224
MS.gene057094.t1 AT2G34480 92.035 113 9 0 5 117 5 117 1.00e-74 223
MS.gene057094.t1 AT1G29965 87.179 117 15 0 1 117 1 117 8.70e-73 218
MS.gene057094.t1 AT3G14600 88.034 117 14 0 1 117 1 117 1.36e-72 217
MS.gene057094.t1 AT1G29970 87.069 116 15 0 2 117 136 251 6.65e-70 215

Find 47 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGAAACTTACCAGAATT+TGG 0.159052 5.3:-73223819 None:intergenic
AGATTAAGAACTATGGAATT+TGG 0.243479 5.3:+73225293 MS.gene057094:CDS
GAAAAGTAATGGACAAGTTT+TGG 0.246012 5.3:+73223967 MS.gene057094:CDS
CGATACACTTTGGTGAAAAC+TGG 0.330332 5.3:+73226604 MS.gene057094:CDS
AGATTTATCGCATGAAGCTT+TGG 0.341025 5.3:+73223771 MS.gene057094:CDS
AACTTACCAGAATTTGGATT+TGG 0.348831 5.3:-73223813 None:intergenic
ACGAGATGGCATCTCGTCAT+AGG 0.358917 5.3:+73225404 MS.gene057094:CDS
CCTACCAAGATTAAGAACTA+TGG 0.366976 5.3:+73225286 MS.gene057094:CDS
GATTTATCGCATGAAGCTTT+GGG 0.367321 5.3:+73223772 MS.gene057094:CDS
TTCGTGCCAAATCCAAATTC+TGG 0.381119 5.3:+73223807 MS.gene057094:CDS
AAGCTTCATGCGATAAATCT+TGG 0.383045 5.3:-73223768 None:intergenic
AATTCCATAGTTCTTAATCT+TGG 0.403701 5.3:-73225290 None:intergenic
TACCGTGATACTACTCTAAA+CGG 0.441043 5.3:+73225361 MS.gene057094:CDS
GGATTTGGCACGAACCTCAT+TGG 0.442665 5.3:-73223798 None:intergenic
AGCTTCATGCGATAAATCTT+GGG 0.476384 5.3:-73223767 None:intergenic
CTCTTCCAACAACCTGGTAC+TGG 0.489846 5.3:-73223718 None:intergenic
TTTCTTGAGGAAGTTGAAGA+AGG 0.490067 5.3:+73223940 MS.gene057094:CDS
TTTCACCAGTACCAGGTTGT+TGG 0.499494 5.3:+73223713 MS.gene057094:CDS
TTGCGTTATCAGAGTCGTAC+TGG 0.505845 5.3:+73225316 MS.gene057094:CDS
AAGAAGGTTAAGAAAAGTAA+TGG 0.518066 5.3:+73223956 MS.gene057094:CDS
ACTTTGGTGAAAACTGGAAT+CGG 0.530037 5.3:+73226610 MS.gene057094:CDS
CCACGATGGAGACAGAGAAA+CGG 0.534281 5.3:+73226480 MS.gene057094:CDS
AAGAGCACTTCCCACCGAAA+AGG 0.541834 5.3:+73223736 MS.gene057094:CDS
CGAGATGGCATCTCGTCATA+GGG 0.544710 5.3:+73225405 MS.gene057094:CDS
CCATAGTTCTTAATCTTGGT+AGG 0.548600 5.3:-73225286 None:intergenic
GAAACAGTTTCACCAGTACC+AGG 0.549157 5.3:+73223706 MS.gene057094:intron
GGCAACCGCTACGACGGCGG+TGG 0.553606 5.3:+73226507 MS.gene057094:CDS
ATTGAATCGACGATACACTT+TGG 0.567072 5.3:+73226594 MS.gene057094:CDS
TCAATAATTGTAGAAAGAGA+AGG 0.569783 5.3:+73226413 MS.gene057094:intron
GACGGCAACCGCTACGACGG+CGG 0.571004 5.3:+73226504 MS.gene057094:CDS
GGAGACAACGACTGCAAAGA+CGG 0.572691 5.3:+73226528 MS.gene057094:CDS
AGAGACAACAACCGCAACAA+CGG 0.575491 5.3:+73226555 MS.gene057094:CDS
TGTCGTCTCCGCCGTTGTTG+CGG 0.576268 5.3:-73226566 None:intergenic
GGAGACGGCAACCGCTACGA+CGG 0.585530 5.3:+73226501 MS.gene057094:CDS
TGGTTATCACAATATGTACA+AGG 0.613559 5.3:+73225336 MS.gene057094:CDS
TGGAGACAGAGAAACGGAGA+CGG 0.617113 5.3:+73226486 MS.gene057094:CDS
GAAGTGCTCTTCCAACAACC+TGG 0.619307 5.3:-73223724 None:intergenic
GACAACAACCGCAACAACGG+CGG 0.620410 5.3:+73226558 MS.gene057094:CDS
TGTCTCCACCGCCGTCGTAG+CGG 0.623064 5.3:-73226512 None:intergenic
GAAGCTTTGGGCAACCAATG+AGG 0.630309 5.3:+73223784 MS.gene057094:CDS
CCGTTTCTCTGTCTCCATCG+TGG 0.641433 5.3:-73226480 None:intergenic
ATTGTTGTAGGTATTTCTTG+AGG 0.651477 5.3:+73223927 MS.gene057094:intron
GGAGACAATGTACAACGAGA+TGG 0.663821 5.3:+73225390 MS.gene057094:CDS
CGCCGTTTAGAGTAGTATCA+CGG 0.671590 5.3:-73225363 None:intergenic
CAAGGCTGCAACAACCACGA+TGG 0.671718 5.3:+73226466 MS.gene057094:CDS
TACTACTCTAAACGGCGCTG+TGG 0.679213 5.3:+73225369 MS.gene057094:CDS
AGTGTATCGTCGATTCAATG+TGG 0.708750 5.3:-73226590 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGCAACAAATAAAAAAAA+CGG - chr5.3:73224765-73224784 None:intergenic 15.0%
!! ATTAATTGAAATTTGATAGA+AGG + chr5.3:73224017-73224036 MS.gene057094:intron 15.0%
!! TTAATAATGTTAATTGTTGT+AGG + chr5.3:73223915-73223934 MS.gene057094:intron 15.0%
!! TTAATTGAAATTTGATAGAA+GGG + chr5.3:73224018-73224037 MS.gene057094:intron 15.0%
!!! TGATTTTTTAAAATAAGTTC+AGG - chr5.3:73226058-73226077 None:intergenic 15.0%
!! AAACAGTATCAGTTAAAATT+AGG + chr5.3:73226150-73226169 MS.gene057094:intron 20.0%
!! AACAGTATCAGTTAAAATTA+GGG + chr5.3:73226151-73226170 MS.gene057094:intron 20.0%
!! AGAAGATAAAACAAAATTCT+CGG - chr5.3:73225757-73225776 None:intergenic 20.0%
!! AGTCACAATATACAATTTAA+AGG - chr5.3:73225054-73225073 None:intergenic 20.0%
!! ATATTAGTATATTGTACAGT+TGG + chr5.3:73224364-73224383 MS.gene057094:intron 20.0%
!! GTAAATAAAAACAAATAAGC+TGG - chr5.3:73224095-73224114 None:intergenic 20.0%
!!! ATTCATTATTGTTTAGAGTT+CGG + chr5.3:73226020-73226039 MS.gene057094:intron 20.0%
!!! ATTTTAAGTAGATAGTACTT+TGG + chr5.3:73224826-73224845 MS.gene057094:intron 20.0%
!!! TTGAATATGGTTTTTTTAAG+TGG - chr5.3:73226302-73226321 None:intergenic 20.0%
!!! TTTTTCTCTTTATGATGTAT+TGG + chr5.3:73225794-73225813 MS.gene057094:intron 20.0%
! AAGAAGGTTAAGAAAAGTAA+TGG + chr5.3:73223956-73223975 MS.gene057094:CDS 25.0%
! AATAGAATAAACAACCTAGA+AGG - chr5.3:73225996-73226015 None:intergenic 25.0%
! AATTCCATAGTTCTTAATCT+TGG - chr5.3:73225293-73225312 None:intergenic 25.0%
! ACAGTATCAGTTAAAATTAG+GGG + chr5.3:73226152-73226171 MS.gene057094:intron 25.0%
! AGATTAAGAACTATGGAATT+TGG + chr5.3:73225293-73225312 MS.gene057094:CDS 25.0%
! ATTTATACTTAGACTGTGTT+TGG + chr5.3:73224056-73224075 MS.gene057094:intron 25.0%
! CAAAATAAAATCAGTTCAGA+AGG - chr5.3:73223654-73223673 None:intergenic 25.0%
! CTTATCTGTTGTAACAAAAA+AGG + chr5.3:73226363-73226382 MS.gene057094:intron 25.0%
! TATAACTGTTTCCAATGAAA+TGG - chr5.3:73226271-73226290 None:intergenic 25.0%
! TCAATAATTGTAGAAAGAGA+AGG + chr5.3:73226413-73226432 MS.gene057094:intron 25.0%
! TGAGAAAATTAAGTTTGATG+CGG + chr5.3:73224735-73224754 MS.gene057094:intron 25.0%
! TGCAGTTAAAGAATTGAATA+TGG - chr5.3:73226315-73226334 None:intergenic 25.0%
! TTATGTTGAAATCCAAACAT+AGG + chr5.3:73224990-73225009 MS.gene057094:intron 25.0%
!! ATGTAATATCTGTCAGTTTT+TGG + chr5.3:73224527-73224546 MS.gene057094:intron 25.0%
!! TGCATGTAAAAGCTTTTATT+TGG + chr5.3:73224197-73224216 MS.gene057094:intron 25.0%
AAATGATGTATTGCCATAAC+TGG - chr5.3:73225019-73225038 None:intergenic 30.0%
AACTTACCAGAATTTGGATT+TGG - chr5.3:73223816-73223835 None:intergenic 30.0%
AATAAAATCAGTTCAGAAGG+TGG - chr5.3:73223651-73223670 None:intergenic 30.0%
AATTGTTGTGAGAGAATTCT+TGG + chr5.3:73225153-73225172 MS.gene057094:intron 30.0%
AGTCTTAATGATTTGAATGC+AGG - chr5.3:73225440-73225459 None:intergenic 30.0%
ATCAGAAACTTACCAGAATT+TGG - chr5.3:73223822-73223841 None:intergenic 30.0%
ATTCACTGAATCACATAAAC+AGG - chr5.3:73225603-73225622 None:intergenic 30.0%
ATTGTTGTAGGTATTTCTTG+AGG + chr5.3:73223927-73223946 MS.gene057094:intron 30.0%
GTCTTAATGATTTGAATGCA+GGG - chr5.3:73225439-73225458 None:intergenic 30.0%
TAAACAAGTGCTTATAAGGT+AGG - chr5.3:73224229-73224248 None:intergenic 30.0%
TAAGTAGATAGTACTTTGGT+TGG + chr5.3:73224830-73224849 MS.gene057094:intron 30.0%
TAATAGCTAAAGCAAACACA+GGG - chr5.3:73225189-73225208 None:intergenic 30.0%
TCCAAAAAGATGGAAATTGA+AGG - chr5.3:73225217-73225236 None:intergenic 30.0%
TGGTTAAACAAGTGCTTATA+AGG - chr5.3:73224233-73224252 None:intergenic 30.0%
TGGTTATCACAATATGTACA+AGG + chr5.3:73225336-73225355 MS.gene057094:CDS 30.0%
TGTGGAGTTAATGTTAAGTT+GGG + chr5.3:73224272-73224291 MS.gene057094:intron 30.0%
TTCTGCTAAAGACAACAAAA+AGG - chr5.3:73224572-73224591 None:intergenic 30.0%
! ACCTTCAATTTCCATCTTTT+TGG + chr5.3:73225213-73225232 MS.gene057094:intron 30.0%
! AGAAAAGCAGTATTTTCACA+AGG + chr5.3:73226448-73226467 MS.gene057094:CDS 30.0%
! ATTTCCATCTTTTTGGACAT+AGG + chr5.3:73225220-73225239 MS.gene057094:intron 30.0%
! ATTTTGTGTGAATCGTAACA+CGG + chr5.3:73223668-73223687 MS.gene057094:intron 30.0%
! GTTTTTCCAAAACAGTTTAC+TGG - chr5.3:73226218-73226237 None:intergenic 30.0%
! TTTCCATCTTTTTGGACATA+GGG + chr5.3:73225221-73225240 MS.gene057094:intron 30.0%
!! AGAGGAGAAAGTTATTTCTT+AGG + chr5.3:73224338-73224357 MS.gene057094:intron 30.0%
!! ATAGTACTTTGGTTGGTAAA+GGG + chr5.3:73224837-73224856 MS.gene057094:intron 30.0%
!!! AGTTTTGGTTCAAGAGAAAA+TGG - chr5.3:73226240-73226259 None:intergenic 30.0%
!!! GAAAAGTAATGGACAAGTTT+TGG + chr5.3:73223967-73223986 MS.gene057094:CDS 30.0%
!!! GATCACTTTATTTTGAAGGA+GGG + chr5.3:73225841-73225860 MS.gene057094:intron 30.0%
!!! TAGCGATCACTTTATTTTGA+AGG + chr5.3:73225837-73225856 MS.gene057094:intron 30.0%
AAGCTTCATGCGATAAATCT+TGG - chr5.3:73223771-73223790 None:intergenic 35.0%
ACTCTTATTGCTGGGAAAAA+AGG + chr5.3:73225888-73225907 MS.gene057094:intron 35.0%
ACTGAATCACATAAACAGGT+TGG - chr5.3:73225599-73225618 None:intergenic 35.0%
ACTTTGGTGAAAACTGGAAT+CGG + chr5.3:73226610-73226629 MS.gene057094:CDS 35.0%
AGATTTATCGCATGAAGCTT+TGG + chr5.3:73223771-73223790 MS.gene057094:CDS 35.0%
AGCTTCATGCGATAAATCTT+GGG - chr5.3:73223770-73223789 None:intergenic 35.0%
ATTCTCGGTAAGTAACAACT+AGG - chr5.3:73225742-73225761 None:intergenic 35.0%
ATTGAATCGACGATACACTT+TGG + chr5.3:73226594-73226613 MS.gene057094:CDS 35.0%
CAAACATAGGTAACCAGTTA+TGG + chr5.3:73225003-73225022 MS.gene057094:intron 35.0%
CACATTTCGCTTCTCATATT+GGG + chr5.3:73225623-73225642 MS.gene057094:intron 35.0%
CATAAATGGAGGTAAATGGA+TGG - chr5.3:73224450-73224469 None:intergenic 35.0%
CATAACTGGTTACCTATGTT+TGG - chr5.3:73225005-73225024 None:intergenic 35.0%
CCATAGTTCTTAATCTTGGT+AGG - chr5.3:73225289-73225308 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG + chr5.3:73225286-73225305 MS.gene057094:CDS 35.0%
CTCTCATAAATGGAGGTAAA+TGG - chr5.3:73224454-73224473 None:intergenic 35.0%
CTGAATCACATAAACAGGTT+GGG - chr5.3:73225598-73225617 None:intergenic 35.0%
CTGTGGAGTTAATGTTAAGT+TGG + chr5.3:73224271-73224290 MS.gene057094:intron 35.0%
GATTTATCGCATGAAGCTTT+GGG + chr5.3:73223772-73223791 MS.gene057094:CDS 35.0%
GTAATAGCTAAAGCAAACAC+AGG - chr5.3:73225190-73225209 None:intergenic 35.0%
GTGTGTCTATCTCTCATAAA+TGG - chr5.3:73224464-73224483 None:intergenic 35.0%
GTTCTGTTGTGATTATTGCT+GGG + chr5.3:73224890-73224909 MS.gene057094:intron 35.0%
TAATCTTCTTGTACACCAGA+GGG - chr5.3:73225531-73225550 None:intergenic 35.0%
TACCGTGATACTACTCTAAA+CGG + chr5.3:73225361-73225380 MS.gene057094:CDS 35.0%
TACTTAGACTGTGTTTGGAT+TGG + chr5.3:73224061-73224080 MS.gene057094:intron 35.0%
TCACATTTCGCTTCTCATAT+TGG + chr5.3:73225622-73225641 MS.gene057094:intron 35.0%
TGGATCATGTGAACTATATC+TGG + chr5.3:73226188-73226207 MS.gene057094:intron 35.0%
TGTCTATCTCTCATAAATGG+AGG - chr5.3:73224461-73224480 None:intergenic 35.0%
TGTGTACGAGGTAGATAAAT+GGG + chr5.3:73224692-73224711 MS.gene057094:intron 35.0%
TGTTCTGTTGTGATTATTGC+TGG + chr5.3:73224889-73224908 MS.gene057094:intron 35.0%
TTATTGCTGGGAAAAAAGGA+AGG + chr5.3:73225892-73225911 MS.gene057094:intron 35.0%
TTTCTTGAGGAAGTTGAAGA+AGG + chr5.3:73223940-73223959 MS.gene057094:CDS 35.0%
! GGAAATCCAGTAAACTGTTT+TGG + chr5.3:73226209-73226228 MS.gene057094:intron 35.0%
! TGTAACCTTTTCCTAAGTCA+TGG + chr5.3:73224658-73224677 MS.gene057094:intron 35.0%
! TGTTTCCAATGAAATGGACT+GGG - chr5.3:73226265-73226284 None:intergenic 35.0%
! TTCCATCTTTTTGGACATAG+GGG + chr5.3:73225222-73225241 MS.gene057094:intron 35.0%
! TTTTGTGTGAATCGTAACAC+GGG + chr5.3:73223669-73223688 MS.gene057094:intron 35.0%
!! GATAGTACTTTGGTTGGTAA+AGG + chr5.3:73224836-73224855 MS.gene057094:intron 35.0%
!! TAACTCCACAGCTGTTTTAA+GGG - chr5.3:73224262-73224281 None:intergenic 35.0%
!! TTAACTCCACAGCTGTTTTA+AGG - chr5.3:73224263-73224282 None:intergenic 35.0%
!!! ACAAGTTTTGGCTATCAATG+AGG + chr5.3:73223979-73223998 MS.gene057094:CDS 35.0%
!!! CGATCACTTTATTTTGAAGG+AGG + chr5.3:73225840-73225859 MS.gene057094:intron 35.0%
!!! TGGCTTTGTAGGTTGTTTTT+AGG - chr5.3:73225570-73225589 None:intergenic 35.0%
AACCCCTATGTCCAAAAAGA+TGG - chr5.3:73225227-73225246 None:intergenic 40.0%
AATAACTTTCTCCTCTCCAC+AGG - chr5.3:73224334-73224353 None:intergenic 40.0%
AGATAGACACACTCATTTGG+CGG + chr5.3:73224472-73224491 MS.gene057094:intron 40.0%
ATAACTTTCTCCTCTCCACA+GGG - chr5.3:73224333-73224352 None:intergenic 40.0%
ATGCTCATAGCTAATGAGCT+AGG + chr5.3:73225924-73225943 MS.gene057094:intron 40.0%
CGATACACTTTGGTGAAAAC+TGG + chr5.3:73226604-73226623 MS.gene057094:CDS 40.0%
CTAATCTTCTTGTACACCAG+AGG - chr5.3:73225532-73225551 None:intergenic 40.0%
CTCTGGTGTACAAGAAGATT+AGG + chr5.3:73225530-73225549 MS.gene057094:intron 40.0%
CTGTTTCCAATGAAATGGAC+TGG - chr5.3:73226266-73226285 None:intergenic 40.0%
GAATAAACAACCTAGAAGGC+TGG - chr5.3:73225992-73226011 None:intergenic 40.0%
GAGAGATAGACACACTCATT+TGG + chr5.3:73224469-73224488 MS.gene057094:intron 40.0%
GTGTGTACGAGGTAGATAAA+TGG + chr5.3:73224691-73224710 MS.gene057094:intron 40.0%
GTTTGTGCACTCTTATTGCT+GGG + chr5.3:73225880-73225899 MS.gene057094:intron 40.0%
TACTTGCATAAGCGCTTATG+AGG + chr5.3:73224112-73224131 MS.gene057094:intron 40.0%
TGGGAAGAACAAAGTTGTGT+TGG + chr5.3:73225957-73225976 MS.gene057094:intron 40.0%
TGTGAGAGAATTCTTGGACT+AGG + chr5.3:73225159-73225178 MS.gene057094:intron 40.0%
TGTTTGTGCACTCTTATTGC+TGG + chr5.3:73225879-73225898 MS.gene057094:intron 40.0%
TTCCAAAATCAAGTTCCCTC+TGG + chr5.3:73225513-73225532 MS.gene057094:intron 40.0%
TTCCACCATGACTTAGGAAA+AGG - chr5.3:73224666-73224685 None:intergenic 40.0%
TTCGTGCCAAATCCAAATTC+TGG + chr5.3:73223807-73223826 MS.gene057094:CDS 40.0%
! AACCTTTTCCTAAGTCATGG+TGG + chr5.3:73224661-73224680 MS.gene057094:intron 40.0%
! ATGAGCTAGGTTTTGCGAAA+TGG + chr5.3:73225937-73225956 MS.gene057094:intron 40.0%
! CTTGGGATGTTCATCCTTTT+CGG - chr5.3:73223753-73223772 None:intergenic 40.0%
! GAGTATAATTTTGCACCCTG+TGG + chr5.3:73224315-73224334 MS.gene057094:intron 40.0%
! TCCCTTTTGCACAAATTAGC+CGG - chr5.3:73225472-73225491 None:intergenic 40.0%
! TGAGCTAGGTTTTGCGAAAT+GGG + chr5.3:73225938-73225957 MS.gene057094:intron 40.0%
! TTAGGGGTGTGCAAAAAAAC+TGG + chr5.3:73226168-73226187 MS.gene057094:intron 40.0%
!! AGTGTATCGTCGATTCAATG+TGG - chr5.3:73226593-73226612 None:intergenic 40.0%
!! ATTTGGCGGGGATTTGATTT+TGG + chr5.3:73224486-73224505 MS.gene057094:intron 40.0%
!! TACTTTGGTTGGTAAAGGGA+AGG + chr5.3:73224841-73224860 MS.gene057094:intron 40.0%
!! TCTCTTGTTCTCTGAAATGC+AGG - chr5.3:73226339-73226358 None:intergenic 40.0%
!!! AGCTGTTTTAAGGGACTGTT+TGG - chr5.3:73224253-73224272 None:intergenic 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+TGG - chr5.3:73225559-73225578 None:intergenic 40.0%
ACAGTCCCTTAAAACAGCTG+TGG + chr5.3:73224254-73224273 MS.gene057094:intron 45.0%
ACTGACCCAGTCCATTTCAT+TGG + chr5.3:73226257-73226276 MS.gene057094:intron 45.0%
AGAAGATTAGGCCACCAACT+AGG + chr5.3:73225542-73225561 MS.gene057094:intron 45.0%
AGAGACAACAACCGCAACAA+CGG + chr5.3:73226555-73226574 MS.gene057094:CDS 45.0%
ATAGACACACTCATTTGGCG+GGG + chr5.3:73224474-73224493 MS.gene057094:intron 45.0%
ATGCGTAGAGAGACTCTCTT+CGG + chr5.3:73224407-73224426 MS.gene057094:intron 45.0%
CCTAGATTCCACCATGACTT+AGG - chr5.3:73224672-73224691 None:intergenic 45.0%
GAAACAGTTTCACCAGTACC+AGG + chr5.3:73223706-73223725 MS.gene057094:intron 45.0%
GAACAAGCCCTACTTGCAAT+CGG - chr5.3:73224874-73224893 None:intergenic 45.0%
GATAGACACACTCATTTGGC+GGG + chr5.3:73224473-73224492 MS.gene057094:intron 45.0%
GCTCATTAGCTATGAGCATC+TGG - chr5.3:73225923-73225942 None:intergenic 45.0%
GGAGACAATGTACAACGAGA+TGG + chr5.3:73225390-73225409 MS.gene057094:CDS 45.0%
GTAATTGTGTCCAGCCTTCT+AGG + chr5.3:73225979-73225998 MS.gene057094:intron 45.0%
TGTTGCTCCGATTGCAAGTA+GGG + chr5.3:73224864-73224883 MS.gene057094:intron 45.0%
TTGCGTTATCAGAGTCGTAC+TGG + chr5.3:73225316-73225335 MS.gene057094:CDS 45.0%
TTTCACCAGTACCAGGTTGT+TGG + chr5.3:73223713-73223732 MS.gene057094:CDS 45.0%
TTTGCACAAATTAGCCGGGA+TGG - chr5.3:73225467-73225486 None:intergenic 45.0%
! CACCAGAGGGAACTTGATTT+TGG - chr5.3:73225518-73225537 None:intergenic 45.0%
! CATAAACAGGTTGGGCTTCT+TGG - chr5.3:73225590-73225609 None:intergenic 45.0%
! CCCGGCTAATTTGTGCAAAA+GGG + chr5.3:73225468-73225487 MS.gene057094:intron 45.0%
! CCCTTTTGCACAAATTAGCC+GGG - chr5.3:73225471-73225490 None:intergenic 45.0%
! CCTAAGTCATGGTGGAATCT+AGG + chr5.3:73224669-73224688 MS.gene057094:intron 45.0%
! CGCCGTTTAGAGTAGTATCA+CGG - chr5.3:73225366-73225385 None:intergenic 45.0%
! GGATGTTCATCCTTTTCGGT+GGG - chr5.3:73223749-73223768 None:intergenic 45.0%
! TAATTTTGCACCCTGTGGAG+AGG + chr5.3:73224320-73224339 MS.gene057094:intron 45.0%
! TCCCGGCTAATTTGTGCAAA+AGG + chr5.3:73225467-73225486 MS.gene057094:intron 45.0%
!! GTTTTTAGGCTCCTAGTTGG+TGG - chr5.3:73225556-73225575 None:intergenic 45.0%
!!! GAAATGGACTGGGTCAGTTT+TGG - chr5.3:73226255-73226274 None:intergenic 45.0%
ACGAGATGGCATCTCGTCAT+AGG + chr5.3:73225404-73225423 MS.gene057094:CDS 50.0%
CATTAAGACTGCCACCATCC+CGG + chr5.3:73225450-73225469 MS.gene057094:intron 50.0%
CCACGATGGAGACAGAGAAA+CGG + chr5.3:73226480-73226499 MS.gene057094:CDS 50.0%
CGAGATGGCATCTCGTCATA+GGG + chr5.3:73225405-73225424 MS.gene057094:CDS 50.0%
CTCTTCCAACAACCTGGTAC+TGG - chr5.3:73223721-73223740 None:intergenic 50.0%
GGAGACAACGACTGCAAAGA+CGG + chr5.3:73226528-73226547 MS.gene057094:CDS 50.0%
GGATTTGGCACGAACCTCAT+TGG - chr5.3:73223801-73223820 None:intergenic 50.0%
GTGGAATCTAGGTGTGTACG+AGG + chr5.3:73224680-73224699 MS.gene057094:intron 50.0%
TACTACTCTAAACGGCGCTG+TGG + chr5.3:73225369-73225388 MS.gene057094:CDS 50.0%
TGGAGACAGAGAAACGGAGA+CGG + chr5.3:73226486-73226505 MS.gene057094:CDS 50.0%
! GAAGTGCTCTTCCAACAACC+TGG - chr5.3:73223727-73223746 None:intergenic 50.0%
! GGGATGTTCATCCTTTTCGG+TGG - chr5.3:73223750-73223769 None:intergenic 50.0%
! GTGTTGCTCCGATTGCAAGT+AGG + chr5.3:73224863-73224882 MS.gene057094:intron 50.0%
!! AAGAGCACTTCCCACCGAAA+AGG + chr5.3:73223736-73223755 MS.gene057094:CDS 50.0%
!! GAAGCTTTGGGCAACCAATG+AGG + chr5.3:73223784-73223803 MS.gene057094:CDS 50.0%
!! GTTGGGCTTCTTGGCTTTGT+AGG - chr5.3:73225581-73225600 None:intergenic 50.0%
CAAGGCTGCAACAACCACGA+TGG + chr5.3:73226466-73226485 MS.gene057094:CDS 55.0%
CCGTTTCTCTGTCTCCATCG+TGG - chr5.3:73226483-73226502 None:intergenic 55.0%
GACAACAACCGCAACAACGG+CGG + chr5.3:73226558-73226577 MS.gene057094:CDS 55.0%
GCACAAATTAGCCGGGATGG+TGG - chr5.3:73225464-73225483 None:intergenic 55.0%
TGGCATCTCGTCATAGGGTC+AGG + chr5.3:73225410-73225429 MS.gene057094:intron 55.0%
TGTCGTCTCCGCCGTTGTTG+CGG - chr5.3:73226569-73226588 None:intergenic 60.0%
GGAGACGGCAACCGCTACGA+CGG + chr5.3:73226501-73226520 MS.gene057094:CDS 65.0%
TGTCTCCACCGCCGTCGTAG+CGG - chr5.3:73226515-73226534 None:intergenic 65.0%
GACGGCAACCGCTACGACGG+CGG + chr5.3:73226504-73226523 MS.gene057094:CDS 70.0%
GGCAACCGCTACGACGGCGG+TGG + chr5.3:73226507-73226526 MS.gene057094:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 73223603 73226653 73223603 ID=MS.gene057094
chr5.3 mRNA 73223603 73226653 73223603 ID=MS.gene057094.t1;Parent=MS.gene057094
chr5.3 exon 73223603 73223617 73223603 ID=MS.gene057094.t1.exon1;Parent=MS.gene057094.t1
chr5.3 CDS 73223603 73223617 73223603 ID=cds.MS.gene057094.t1;Parent=MS.gene057094.t1
chr5.3 exon 73223713 73223828 73223713 ID=MS.gene057094.t1.exon2;Parent=MS.gene057094.t1
chr5.3 CDS 73223713 73223828 73223713 ID=cds.MS.gene057094.t1;Parent=MS.gene057094.t1
chr5.3 exon 73223937 73224000 73223937 ID=MS.gene057094.t1.exon3;Parent=MS.gene057094.t1
chr5.3 CDS 73223937 73224000 73223937 ID=cds.MS.gene057094.t1;Parent=MS.gene057094.t1
chr5.3 exon 73225271 73225426 73225271 ID=MS.gene057094.t1.exon4;Parent=MS.gene057094.t1
chr5.3 CDS 73225271 73225426 73225271 ID=cds.MS.gene057094.t1;Parent=MS.gene057094.t1
chr5.3 exon 73226426 73226653 73226426 ID=MS.gene057094.t1.exon5;Parent=MS.gene057094.t1
chr5.3 CDS 73226426 73226653 73226426 ID=cds.MS.gene057094.t1;Parent=MS.gene057094.t1
Gene Sequence

>MS.gene057094

ATGGTTAACGCTAAGGTATGAATTTTCTTCATTTTTCATTCTTTTCCACCTTCTGAACTGATTTTATTTTGTGTGAATCGTAACACGGGTATGAACTTTTGTTGAAACAGTTTCACCAGTACCAGGTTGTTGGAAGAGCACTTCCCACCGAAAAGGATGAACATCCCAAGATTTATCGCATGAAGCTTTGGGCAACCAATGAGGTTCGTGCCAAATCCAAATTCTGGTAAGTTTCTGATTCATTTTGAAATCGTTATGTTTTTTTAATTTTCTATGAAGATTAACTATTTAACATGATTAATAATTGTGTTATTAATAATGTTAATTGTTGTAGGTATTTCTTGAGGAAGTTGAAGAAGGTTAAGAAAAGTAATGGACAAGTTTTGGCTATCAATGAGGTATGCACATTGATTCATTAATTGAAATTTGATAGAAGGGTTGTAGTTAAGCTAGATTTATACTTAGACTGTGTTTGGATTGGACTTTTAACCAGCTTATTTGTTTTTATTTACTTGCATAAGCGCTTATGAGGTATTTGTAGAGCTTAAGATAACAATTTTTATGATATTTAAATGATTTTAGCTAATTTCAATTTGCATGTAAAAGCTTTTATTTGGTAAATACCTACCTTATAAGCACTTGTTTAACCAAACAGTCCCTTAAAACAGCTGTGGAGTTAATGTTAAGTTGGGATAGAAAAAAATAATGATAAGAGTATAATTTTGCACCCTGTGGAGAGGAGAAAGTTATTTCTTAGGCATATATTAGTATATTGTACAGTTGGATGAATTGAAAATGAGTTCTATGCGTAGAGAGACTCTCTTCGGTGTGAGTCTATTATGTACCATCCATTTACCTCCATTTATGAGAGATAGACACACTCATTTGGCGGGGATTTGATTTTGGTAATTTGTATATTATGTAATGTAATATCTGTCAGTTTTTGGAAGAAAATGTTTTTCTAATCCTTTTTGTTGTCTTTAGCAGAAAATAGTTTTGATTATGAGAAGTTGTTTATTATTTAATATCTGTCACTTTTTAAAGATAGTTTTCTTTGTAACCTTTTCCTAAGTCATGGTGGAATCTAGGTGTGTACGAGGTAGATAAATGGGTACAAATAAATTGTGATGCTTGAGAAAATTAAGTTTGATGCGGATCTCCGTTTTTTTTATTTGTTGCTTTTAAAGTTAAATAGCATTTTGTGTTCAATTTTAATCAAATTGATTTTAAGTAGATAGTACTTTGGTTGGTAAAGGGAAGGTGTTGCTCCGATTGCAAGTAGGGCTTGTTCTGTTGTGATTATTGCTGGGATAAAATTTGATATGTTAACTTGTTGAGAAGTCACTTGCTAAATATTTGAGTGTAAGCTGTTTTGATTGAAGACTAATTATGTTGAAATCCAAACATAGGTAACCAGTTATGGCAATACATCATTTTAGTTGATTTCTCCTTTAAATTGTATATTGTGACTAATATCATAGTTGAACTTGAAAATTATGCTCGTTTTTTTTATTGTATATTGTTTCAATTATTCGAAGAAAAGTAATGCTAATTGTTGTGAGAGAATTCTTGGACTAGGATTTCCCTGTGTTTGCTTTAGCTATTACTTTACCTTCAATTTCCATCTTTTTGGACATAGGGGTTGATGCTACTTTTTTTTTATTGCAGATCTTTGAGAAAAATCCTACCAAGATTAAGAACTATGGAATTTGGTTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGTGATACTACTCTAAACGGCGCTGTGGAGACAATGTACAACGAGATGGCATCTCGTCATAGGGTCAGGTTTCCCTGCATTCAAATCATTAAGACTGCCACCATCCCGGCTAATTTGTGCAAAAGGGAGAGCACTAAGCAGTTTCACAATTCCAAAATCAAGTTCCCTCTGGTGTACAAGAAGATTAGGCCACCAACTAGGAGCCTAAAAACAACCTACAAAGCCAAGAAGCCCAACCTGTTTATGTGATTCAGTGAATCACATTTCGCTTCTCATATTGGGAGTTGCTTGATTGATCAGTTAGCACATTAAGAGCTTTCTGAAGATAATCTTGTTTTAAGAAACTTCATTATCAGCAAGACATATTGTGTTTTTCCTAGTTGTTACTTACCGAGAATTTTGTTTTATCTTCTTGTTATGCAGTTATTTATTTTTCTCTTTATGATGTATTGGTACAAGCTCGATTTTGAATCTAGCGATCACTTTATTTTGAAGGAGGGTTTATAATTTTCTATTGTTTGTGCACTCTTATTGCTGGGAAAAAAGGAAGGTAATTCCAGATGCTCATAGCTAATGAGCTAGGTTTTGCGAAATGGGAAGAACAAAGTTGTGTTGGTAATTGTGTCCAGCCTTCTAGGTTGTTTATTCTATTGCTCATTCATTATTGTTTAGAGTTCGGACTGTTGTTTTTCCTGAACTTATTTTAAAAAATCAGTTCGTTTTCAAAACTGAATACAAGCAATGCATACTGAGTTAAAACAGTTTTCAAGAGTACAAATACACATTAAACAGTATCAGTTAAAATTAGGGGTGTGCAAAAAAACTGGATCATGTGAACTATATCTGGAAATCCAGTAAACTGTTTTGGAAAAACCATTTTCTCTTGAACCAAAACTGACCCAGTCCATTTCATTGGAAACAGTTATAAACTGTATCCACTTAAAAAAACCATATTCAATTCTTTAACTGCATCCTGCATTTCAGAGAACAAGAGAGTTACTTATCTGTTGTAACAAAAAAGGTGAGATTGAAAAAACAAAAAAAGTCGCTCAATAATTGTAGAAAGAGAAGGAGAAATTGAAAGAGAAAAGCAGTATTTTCACAAGGCTGCAACAACCACGATGGAGACAGAGAAACGGAGACGGCAACCGCTACGACGGCGGTGGAGACAACGACTGCAAAGACGGCAATAGAGACAACAACCGCAACAACGGCGGAGACGACAACCACATTGAATCGACGATACACTTTGGTGAAAACTGGAATCGGAGAAGAGTATCAATTGAATGA

Protein sequence

>MS.gene057094.t1

MVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRKEKEKLKEKSSIFTRLQQPRWRQRNGDGNRYDGGGDNDCKDGNRDNNRNNGGDDNHIESTIHFGENWNRRRVSIE