Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23101.t1 | AES82362.2 | 98.1 | 476 | 9 | 0 | 1 | 476 | 8 | 483 | 3.70E-275 | 956.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23101.t1 | P42211 | 57.9 | 478 | 189 | 4 | 1 | 476 | 1 | 468 | 9.5e-163 | 574.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23101.t1 | G7KWE8 | 98.1 | 476 | 9 | 0 | 1 | 476 | 1 | 476 | 2.7e-275 | 956.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050795 | MS.gene23101 | 0.986892 | 2.50E-168 | -1.69E-46 |
| MS.gene050797 | MS.gene23101 | 0.998957 | 1.73E-283 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23101.t1 | MTR_7g111530 | 98.109 | 476 | 9 | 0 | 1 | 476 | 8 | 483 | 0.0 | 969 |
| MS.gene23101.t1 | MTR_7g111530 | 98.109 | 476 | 9 | 0 | 1 | 476 | 1 | 476 | 0.0 | 969 |
| MS.gene23101.t1 | MTR_7g111530 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 910 |
| MS.gene23101.t1 | MTR_1g484940 | 76.715 | 481 | 106 | 2 | 1 | 476 | 1 | 480 | 0.0 | 783 |
| MS.gene23101.t1 | MTR_4g123563 | 52.321 | 474 | 215 | 3 | 5 | 476 | 5 | 469 | 0.0 | 541 |
| MS.gene23101.t1 | MTR_4g132420 | 54.268 | 492 | 208 | 5 | 1 | 476 | 1 | 491 | 0.0 | 530 |
| MS.gene23101.t1 | MTR_2g023910 | 55.579 | 484 | 205 | 4 | 1 | 476 | 1 | 482 | 0.0 | 523 |
| MS.gene23101.t1 | MTR_2g045420 | 52.807 | 481 | 220 | 4 | 1 | 476 | 1 | 479 | 0.0 | 519 |
| MS.gene23101.t1 | MTR_2g045420 | 50.000 | 508 | 220 | 5 | 1 | 476 | 1 | 506 | 4.38e-176 | 505 |
| MS.gene23101.t1 | MTR_2g045420 | 50.099 | 507 | 220 | 5 | 1 | 476 | 1 | 505 | 5.62e-176 | 504 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23101.t1 | AT1G11910 | 58.650 | 474 | 186 | 5 | 6 | 476 | 23 | 489 | 0.0 | 566 |
| MS.gene23101.t1 | AT1G11910 | 58.650 | 474 | 186 | 5 | 6 | 476 | 12 | 478 | 0.0 | 566 |
| MS.gene23101.t1 | AT1G62290 | 55.350 | 486 | 206 | 5 | 1 | 476 | 1 | 485 | 0.0 | 550 |
| MS.gene23101.t1 | AT1G62290 | 55.350 | 486 | 206 | 5 | 1 | 476 | 1 | 485 | 0.0 | 549 |
| MS.gene23101.t1 | AT1G62290 | 55.350 | 486 | 206 | 5 | 1 | 476 | 1 | 485 | 0.0 | 549 |
| MS.gene23101.t1 | AT4G04460 | 51.789 | 475 | 223 | 3 | 6 | 476 | 8 | 480 | 0.0 | 516 |
| MS.gene23101.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 1.58e-178 | 508 |
| MS.gene23101.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 1.58e-178 | 508 |
| MS.gene23101.t1 | AT4G04460 | 51.579 | 475 | 220 | 4 | 6 | 476 | 8 | 476 | 3.31e-178 | 509 |
| MS.gene23101.t1 | AT1G62290 | 55.024 | 418 | 177 | 5 | 1 | 408 | 1 | 417 | 3.62e-159 | 457 |
| MS.gene23101.t1 | AT4G22050 | 41.111 | 270 | 150 | 7 | 44 | 309 | 10 | 274 | 4.45e-54 | 185 |
| MS.gene23101.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 47 | 297 | 1.32e-49 | 174 |
| MS.gene23101.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 39 | 289 | 1.64e-49 | 173 |
Find 0 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTCAAATGTTATTTTT+AGG | + | 50595:6608-6627 | MS.gene23101:intron | 10.0% |
| !! | ACAAATTACAATTCTATTTC+TGG | + | 50595:7300-7319 | MS.gene23101:intron | 20.0% |
| !! | ATCATGTATACTTAATACAT+TGG | - | 50595:6582-6601 | None:intergenic | 20.0% |
| !! | GTAACTAAACTTACATTAAA+TGG | - | 50595:5616-5635 | None:intergenic | 20.0% |
| !! | TATACAACAAATAAACATAG+AGG | - | 50595:6549-6568 | None:intergenic | 20.0% |
| !! | TATGTAAAAATTGCAAACAA+TGG | - | 50595:7110-7129 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAACATAGTGAA+TGG | - | 50595:6495-6514 | None:intergenic | 20.0% |
| !!! | GAGGATATATTTTGAAATAA+GGG | + | 50595:6414-6433 | MS.gene23101:intron | 20.0% |
| !!! | GTTTTATATTTCACTTTGAA+CGG | + | 50595:7520-7539 | MS.gene23101:intron | 20.0% |
| !!! | TAAATCTTTTTTCAGGTAAA+TGG | - | 50595:6288-6307 | None:intergenic | 20.0% |
| !!! | TGAGGATATATTTTGAAATA+AGG | + | 50595:6413-6432 | MS.gene23101:intron | 20.0% |
| !!! | TTTTCTTTTCAGATTGAAAT+GGG | + | 50595:6317-6336 | MS.gene23101:intron | 20.0% |
| !!! | TTTTTCTTTTCAGATTGAAA+TGG | + | 50595:6316-6335 | MS.gene23101:intron | 20.0% |
| ! | AAATCACTACTATAAACTGT+AGG | + | 50595:5816-5835 | MS.gene23101:intron | 25.0% |
| ! | ACATCTTGTAAAATAAGCTA+TGG | + | 50595:5659-5678 | MS.gene23101:CDS | 25.0% |
| ! | AGTCAAGATAATGTTAAAGT+TGG | + | 50595:5707-5726 | MS.gene23101:CDS | 25.0% |
| ! | CAATCTGAAAAGAAAAACTT+TGG | - | 50595:6313-6332 | None:intergenic | 25.0% |
| ! | CATTAAATGGCACATAAATA+TGG | - | 50595:5603-5622 | None:intergenic | 25.0% |
| ! | TAAGCTGTAATGATATTTCT+AGG | + | 50595:7627-7646 | MS.gene23101:CDS | 25.0% |
| ! | TCCAAGACATATAACAAAAA+CGG | + | 50595:5555-5574 | MS.gene23101:CDS | 25.0% |
| ! | TTAGATATTCAGTTCTGTTT+CGG | - | 50595:7736-7755 | None:intergenic | 25.0% |
| ! | TTATATATGTACCATAGGTT+TGG | - | 50595:5451-5470 | None:intergenic | 25.0% |
| ! | TTGAGGACATATATATCAAA+GGG | - | 50595:7488-7507 | None:intergenic | 25.0% |
| ! | TTTACTGTCATATTTGATAC+CGG | + | 50595:5356-5375 | MS.gene23101:CDS | 25.0% |
| !! | AGAAATTACTTAGACTTTTG+AGG | + | 50595:6395-6414 | MS.gene23101:intron | 25.0% |
| !! | AGAATTTGGAATTTGGAATT+TGG | + | 50595:6455-6474 | MS.gene23101:intron | 25.0% |
| !! | AGTACCTTTGAAGAATTATA+TGG | + | 50595:5286-5305 | MS.gene23101:CDS | 25.0% |
| !! | ATGATGGAACAAAATCTTAT+CGG | + | 50595:6083-6102 | MS.gene23101:CDS | 25.0% |
| !! | TTTCAGGTAAATGGTTTAAT+TGG | - | 50595:6279-6298 | None:intergenic | 25.0% |
| !! | TTTCAGTATATTCTAAGAAC+CGG | + | 50595:7849-7868 | MS.gene23101:intron | 25.0% |
| !! | TTTTGTCAATGAGAAAGTTT+AGG | + | 50595:7215-7234 | MS.gene23101:intron | 25.0% |
| !!! | TAGTATGGATGCTTTTAAAA+TGG | + | 50595:5196-5215 | MS.gene23101:CDS | 25.0% |
| !!! | TTATTTTTAGGTGTTTGTGA+AGG | + | 50595:6620-6639 | MS.gene23101:intron | 25.0% |
| !!! | TTTGGTGTAAATCTTTTTTC+AGG | - | 50595:6295-6314 | None:intergenic | 25.0% |
| AAACTTGAAACATACCATAC+TGG | - | 50595:5946-5965 | None:intergenic | 30.0% | |
| AAGATCAAACTCATTTAGGT+AGG | - | 50595:6985-7004 | None:intergenic | 30.0% | |
| ACTTACAGAAAAGTAACACT+TGG | - | 50595:5408-5427 | None:intergenic | 30.0% | |
| ATGATAGACCAGTAAATTGA+AGG | - | 50595:6046-6065 | None:intergenic | 30.0% | |
| ATTGAGTGCTTGAAAGAATT+TGG | + | 50595:6441-6460 | MS.gene23101:intron | 30.0% | |
| CCAGAATCAACTAAAACAAA+AGG | + | 50595:7422-7441 | MS.gene23101:CDS | 30.0% | |
| CTTGAGGACATATATATCAA+AGG | - | 50595:7489-7508 | None:intergenic | 30.0% | |
| GATCAAGATCAAACTCATTT+AGG | - | 50595:6989-7008 | None:intergenic | 30.0% | |
| GGAAAGTTTGATGGAATATT+TGG | + | 50595:5883-5902 | MS.gene23101:CDS | 30.0% | |
| GGTATCAAATATGACAGTAA+AGG | - | 50595:5357-5376 | None:intergenic | 30.0% | |
| GTTATAGAAGAACATACAGT+TGG | - | 50595:6692-6711 | None:intergenic | 30.0% | |
| TAAACTGTAGGATTTCATTG+AGG | + | 50595:5828-5847 | MS.gene23101:intron | 30.0% | |
| TATATGGACGCTCAATATTT+CGG | + | 50595:5302-5321 | MS.gene23101:CDS | 30.0% | |
| TGTAAAATAAGCTATGGAAC+CGG | + | 50595:5665-5684 | MS.gene23101:CDS | 30.0% | |
| TTGACTTTACTTGGTTGTTA+TGG | + | 50595:7240-7259 | MS.gene23101:intron | 30.0% | |
| TTGTTTCATTGCACATCAAT+TGG | + | 50595:7131-7150 | MS.gene23101:intron | 30.0% | |
| TTTGATGGAATATTTGGACT+TGG | + | 50595:5889-5908 | MS.gene23101:CDS | 30.0% | |
| ! | GCTTGAAAGAATTTGGAATT+TGG | + | 50595:6448-6467 | MS.gene23101:intron | 30.0% |
| ! | GGAGATAAATTAGTTTGATC+AGG | + | 50595:6249-6268 | MS.gene23101:intron | 30.0% |
| ! | TGAGTTTTTCTGTTGATCAT+TGG | + | 50595:7561-7580 | MS.gene23101:intron | 30.0% |
| !! | AAGGAAGTTGTTTCTCAATA+TGG | + | 50595:6836-6855 | MS.gene23101:CDS | 30.0% |
| !! | ACCGTTTTTGTTATATGTCT+TGG | - | 50595:5559-5578 | None:intergenic | 30.0% |
| !! | AGTTTCAACTAGTCTTTGTT+TGG | + | 50595:5961-5980 | MS.gene23101:intron | 30.0% |
| !! | TCAATATGGAGAGTTGATAT+GGG | + | 50595:6850-6869 | MS.gene23101:CDS | 30.0% |
| !!! | CCTTTTGTTTTAGTTGATTC+TGG | - | 50595:7425-7444 | None:intergenic | 30.0% |
| !!! | GAAATGGGAGATTTTTTCAT+TGG | + | 50595:6332-6351 | MS.gene23101:CDS | 30.0% |
| !!! | GTTTTCCTTTGAAATGCTTA+GGG | - | 50595:6187-6206 | None:intergenic | 30.0% |
| !!! | TGTTTTCCTTTGAAATGCTT+AGG | - | 50595:6188-6207 | None:intergenic | 30.0% |
| AAAACTACAACTTGAGCTTG+AGG | - | 50595:7505-7524 | None:intergenic | 35.0% | |
| AAAAGAAAGACTTCCTTCTC+GGG | - | 50595:5857-5876 | None:intergenic | 35.0% | |
| AAATCACAGGTACAACATGA+TGG | + | 50595:6067-6086 | MS.gene23101:intron | 35.0% | |
| AACACAGAACTTCATAGAGA+AGG | - | 50595:6906-6925 | None:intergenic | 35.0% | |
| AACATAGAGGTGAATATGCA+CGG | - | 50595:6536-6555 | None:intergenic | 35.0% | |
| AATATGACAGTAAAGGTCTG+TGG | - | 50595:5350-5369 | None:intergenic | 35.0% | |
| ACAAAATCTTATCGGTGAGA+AGG | + | 50595:6091-6110 | MS.gene23101:CDS | 35.0% | |
| ACCTCTAGATCTTCATAGTA+TGG | + | 50595:5181-5200 | MS.gene23101:CDS | 35.0% | |
| ACTAAAACAAAAGGCAACCA+AGG | + | 50595:7431-7450 | MS.gene23101:CDS | 35.0% | |
| AGGAAAACACACTTATGTTC+CGG | + | 50595:6199-6218 | MS.gene23101:CDS | 35.0% | |
| ATAGTTGAATACTCTCTCCT+TGG | - | 50595:7451-7470 | None:intergenic | 35.0% | |
| ATATGACAGTAAAGGTCTGT+GGG | - | 50595:5349-5368 | None:intergenic | 35.0% | |
| ATCTGACAAGAAGAACACAA+AGG | - | 50595:7387-7406 | None:intergenic | 35.0% | |
| CAAAAGCAATAAACCCACTA+AGG | - | 50595:7896-7915 | None:intergenic | 35.0% | |
| CCAAACATTTCCTTCACTAT+CGG | + | 50595:7653-7672 | MS.gene23101:CDS | 35.0% | |
| CGCTCTTATATATGTACCAT+AGG | - | 50595:5456-5475 | None:intergenic | 35.0% | |
| CTATACCCATAATTGGTACA+AGG | + | 50595:5524-5543 | MS.gene23101:CDS | 35.0% | |
| CTGGTCTATCATAAAATCAC+AGG | + | 50595:6054-6073 | MS.gene23101:intron | 35.0% | |
| CTTTGCCTTGTACCAATTAT+GGG | - | 50595:5532-5551 | None:intergenic | 35.0% | |
| GAAAAGAAAGACTTCCTTCT+CGG | - | 50595:5858-5877 | None:intergenic | 35.0% | |
| GAAAAGTAACACTTGGATGA+TGG | - | 50595:5401-5420 | None:intergenic | 35.0% | |
| GAAGTAACCAGATATTGATC+CGG | - | 50595:5687-5706 | None:intergenic | 35.0% | |
| GATTGAGATGGTTACTGAAA+AGG | + | 50595:7332-7351 | MS.gene23101:CDS | 35.0% | |
| GCGTCCATATAATTCTTCAA+AGG | - | 50595:5293-5312 | None:intergenic | 35.0% | |
| GCTTCATCTTCAACATAAAC+TGG | + | 50595:5771-5790 | MS.gene23101:intron | 35.0% | |
| GTTTAGGTCTTGACTTTACT+TGG | + | 50595:7231-7250 | MS.gene23101:intron | 35.0% | |
| TATCTAAAGATCGAGACTAG+TGG | + | 50595:7783-7802 | MS.gene23101:intron | 35.0% | |
| TATGTTCCGGTTACTGAAAA+AGG | + | 50595:6212-6231 | MS.gene23101:CDS | 35.0% | |
| TATTCAGTTCTGTTTCGGAA+AGG | - | 50595:7731-7750 | None:intergenic | 35.0% | |
| TCCATACTATGAAGATCTAG+AGG | - | 50595:5185-5204 | None:intergenic | 35.0% | |
| TCTTTGCCTTGTACCAATTA+TGG | - | 50595:5533-5552 | None:intergenic | 35.0% | |
| TGATTAACTTTAGCCTGTTG+TGG | + | 50595:6763-6782 | MS.gene23101:intron | 35.0% | |
| TGGTTGTTATGGAACATTTC+TGG | + | 50595:7251-7270 | MS.gene23101:intron | 35.0% | |
| TTGTCAGATGCTTGTTCTTT+GGG | + | 50595:7398-7417 | MS.gene23101:CDS | 35.0% | |
| TTTCCATGCCTTCAATTTAC+TGG | + | 50595:6035-6054 | MS.gene23101:intron | 35.0% | |
| ! | AGAAGGAAGTCTTTCTTTTC+TGG | + | 50595:5858-5877 | MS.gene23101:CDS | 35.0% |
| ! | CACAACATGTCACTCTAAAA+TGG | - | 50595:6010-6029 | None:intergenic | 35.0% |
| ! | GGAATTTGGAATTTGGTACA+AGG | + | 50595:6462-6481 | MS.gene23101:intron | 35.0% |
| ! | TATATTCTAAGAACCGGAGA+AGG | + | 50595:7855-7874 | MS.gene23101:CDS | 35.0% |
| !! | CTCAATATGGAGAGTTGATA+TGG | + | 50595:6849-6868 | MS.gene23101:CDS | 35.0% |
| !!! | ATGGGAGATTTTTTCATTGG+AGG | + | 50595:6335-6354 | MS.gene23101:CDS | 35.0% |
| !!! | CAGTAACCTTTTTCAGTAAC+CGG | - | 50595:6221-6240 | None:intergenic | 35.0% |
| !!! | TGTTCTCTTTTTGGCTCAAT+GGG | + | 50595:6114-6133 | MS.gene23101:CDS | 35.0% |
| !!! | TTTTTAGGTGTTTGTGAAGG+TGG | + | 50595:6623-6642 | MS.gene23101:intron | 35.0% |
| AAAAAGGTTACTGGCAGGTT+AGG | + | 50595:6228-6247 | MS.gene23101:intron | 40.0% | |
| AAACAATGGAAGCAGACAGT+AGG | - | 50595:7096-7115 | None:intergenic | 40.0% | |
| AACAATGGAAGCAGACAGTA+GGG | - | 50595:7095-7114 | None:intergenic | 40.0% | |
| AACTCTTGTCTCCAAACCTA+TGG | + | 50595:5437-5456 | MS.gene23101:intron | 40.0% | |
| AATCCTAATGCGAAAAAGGG+TGG | + | 50595:6137-6156 | MS.gene23101:CDS | 40.0% | |
| ACCAATTCTCATCATCCCAA+AGG | - | 50595:5150-5169 | None:intergenic | 40.0% | |
| AGAACTTCATAGAGAAGGCA+GGG | - | 50595:6901-6920 | None:intergenic | 40.0% | |
| AGACCAGTAAATTGAAGGCA+TGG | - | 50595:6041-6060 | None:intergenic | 40.0% | |
| AGAGAACAACAGCTAAGATC+AGG | + | 50595:5221-5240 | MS.gene23101:CDS | 40.0% | |
| ATATGGGATCTCCTAGTATC+AGG | + | 50595:6866-6885 | MS.gene23101:CDS | 40.0% | |
| ATTTAGGTAGGTCCAAAGAG+TGG | - | 50595:6973-6992 | None:intergenic | 40.0% | |
| CAAAGAGTGGAAATGCAAAC+GGG | - | 50595:6960-6979 | None:intergenic | 40.0% | |
| CACTTTGTTACTCGTTGATC+AGG | + | 50595:5635-5654 | MS.gene23101:intron | 40.0% | |
| CCAAAGAGTGGAAATGCAAA+CGG | - | 50595:6961-6980 | None:intergenic | 40.0% | |
| CCGATAGTGAAGGAAATGTT+TGG | - | 50595:7656-7675 | None:intergenic | 40.0% | |
| CGGTTACTGAAAAAGGTTAC+TGG | + | 50595:6219-6238 | MS.gene23101:CDS | 40.0% | |
| CTGACCTATTAGATTGATCC+CGG | - | 50595:7064-7083 | None:intergenic | 40.0% | |
| CTTGTCAGATGCTTGTTCTT+TGG | + | 50595:7397-7416 | MS.gene23101:CDS | 40.0% | |
| GACTTATGTGCAAGCATCAT+TGG | - | 50595:5251-5270 | None:intergenic | 40.0% | |
| GCTGAAATCAACCATGCTAT+TGG | + | 50595:6785-6804 | MS.gene23101:CDS | 40.0% | |
| GGGAATCCTAATGCGAAAAA+GGG | + | 50595:6134-6153 | MS.gene23101:CDS | 40.0% | |
| GTACCAATTATGGGTATAGC+AGG | - | 50595:5523-5542 | None:intergenic | 40.0% | |
| GTTGACCCTAAGCATTTCAA+AGG | + | 50595:6179-6198 | MS.gene23101:CDS | 40.0% | |
| TACTGAAAAAGGTTACTGGC+AGG | + | 50595:6223-6242 | MS.gene23101:CDS | 40.0% | |
| TATGACAGTAAAGGTCTGTG+GGG | - | 50595:5348-5367 | None:intergenic | 40.0% | |
| TATGGAACCGGATCAATATC+TGG | + | 50595:5677-5696 | MS.gene23101:CDS | 40.0% | |
| TATGGGATCTCCTAGTATCA+GGG | + | 50595:6867-6886 | MS.gene23101:CDS | 40.0% | |
| TATTTCGGTGAGATCGCAAT+TGG | + | 50595:5317-5336 | MS.gene23101:CDS | 40.0% | |
| TGAGTTTGATCTTGATCTGC+AGG | + | 50595:6992-7011 | MS.gene23101:intron | 40.0% | |
| TGCAAACGGGAAATGATAAC+AGG | - | 50595:6947-6966 | None:intergenic | 40.0% | |
| TGGGAATCCTAATGCGAAAA+AGG | + | 50595:6133-6152 | MS.gene23101:CDS | 40.0% | |
| TTCATTGGAGGTTTGTCAAC+AGG | + | 50595:6347-6366 | MS.gene23101:CDS | 40.0% | |
| TTGAAAGAGCTTTGCCAGTA+TGG | + | 50595:5929-5948 | MS.gene23101:CDS | 40.0% | |
| TTGCCTGCTATACCCATAAT+TGG | + | 50595:5517-5536 | MS.gene23101:CDS | 40.0% | |
| TTTGATGTTCCTCCTCCAAA+GGG | + | 50595:7912-7931 | MS.gene23101:CDS | 40.0% | |
| ! | TTTCTGGCAGGAAAGTTTGA+TGG | + | 50595:5874-5893 | MS.gene23101:CDS | 40.0% |
| ! | TTTTGATGTTCCTCCTCCAA+AGG | + | 50595:7911-7930 | MS.gene23101:CDS | 40.0% |
| !! | AATTCTATTTCTGGCAGTGC+TGG | + | 50595:7309-7328 | MS.gene23101:intron | 40.0% |
| !! | ACAGCTTATCACTGATTCAC+CGG | - | 50595:7615-7634 | None:intergenic | 40.0% |
| !! | AGTTCTGAGTGTAGAATGCA+AGG | + | 50595:6817-6836 | MS.gene23101:CDS | 40.0% |
| !! | ATTCTATTTCTGGCAGTGCT+GGG | + | 50595:7310-7329 | MS.gene23101:intron | 40.0% |
| !! | TCCTTTGGGATGATGAGAAT+TGG | + | 50595:5146-5165 | MS.gene23101:CDS | 40.0% |
| !!! | AAGGGTGGTGAATTGGTTTT+TGG | + | 50595:6152-6171 | MS.gene23101:CDS | 40.0% |
| !!! | GTGAGAAGGTGTTCTCTTTT+TGG | + | 50595:6105-6124 | MS.gene23101:CDS | 40.0% |
| !!! | GTGTTCTCTTTTTGGCTCAA+TGG | + | 50595:6113-6132 | MS.gene23101:CDS | 40.0% |
| AAAGGAGAAGGAAGGAAGCA+GGG | - | 50595:5132-5151 | None:intergenic | 45.0% | |
| AACCATGCTATTGGAGCTGA+AGG | + | 50595:6794-6813 | MS.gene23101:CDS | 45.0% | |
| AACCCAAAGGTTGGAACTAC+CGG | - | 50595:5378-5397 | None:intergenic | 45.0% | |
| ACCTATTAGATTGATCCCGG+CGG | - | 50595:7061-7080 | None:intergenic | 45.0% | |
| ACTTGTGAACATACGTCACC+AGG | - | 50595:7023-7042 | None:intergenic | 45.0% | |
| ATACCGGTAGTTCCAACCTT+TGG | + | 50595:5372-5391 | MS.gene23101:CDS | 45.0% | |
| ATCATCCCAAAGGAGAAGGA+AGG | - | 50595:5140-5159 | None:intergenic | 45.0% | |
| ATGACAGTAAAGGTCTGTGG+GGG | - | 50595:5347-5366 | None:intergenic | 45.0% | |
| ATGGGATCTCCTAGTATCAG+GGG | + | 50595:6868-6887 | MS.gene23101:CDS | 45.0% | |
| ATTACACAGGTCTGCCTTAG+TGG | + | 50595:7879-7898 | MS.gene23101:CDS | 45.0% | |
| CAGAACTTCATAGAGAAGGC+AGG | - | 50595:6902-6921 | None:intergenic | 45.0% | |
| CAGTTCTGTTGTCAAGCATC+AGG | + | 50595:5730-5749 | MS.gene23101:CDS | 45.0% | |
| CCGTTTGCATTTCCACTCTT+TGG | + | 50595:6958-6977 | MS.gene23101:intron | 45.0% | |
| CGGGATCAATCTAATAGGTC+AGG | + | 50595:7062-7081 | MS.gene23101:intron | 45.0% | |
| CTTGATCTGCAGGTAAAACC+TGG | + | 50595:7002-7021 | MS.gene23101:intron | 45.0% | |
| GAAATGATAACAGGCTGCTG+CGG | - | 50595:6938-6957 | None:intergenic | 45.0% | |
| GGTGACGTATGTTCACAAGT+TGG | + | 50595:7023-7042 | MS.gene23101:CDS | 45.0% | |
| GTTTCGGAAAGGTAGCTAGT+AGG | - | 50595:7720-7739 | None:intergenic | 45.0% | |
| TACCGGTAGTTCCAACCTTT+GGG | + | 50595:5373-5392 | MS.gene23101:CDS | 45.0% | |
| TAGGTAATCCGAACCTGTTC+TGG | - | 50595:7701-7720 | None:intergenic | 45.0% | |
| TCAGGAACATCTTTGCTTGC+TGG | + | 50595:6665-6684 | MS.gene23101:CDS | 45.0% | |
| TCTCATCATCCCAAAGGAGA+AGG | - | 50595:5144-5163 | None:intergenic | 45.0% | |
| TGCGAAAAAGGGTGGTGAAT+TGG | + | 50595:6145-6164 | MS.gene23101:CDS | 45.0% | |
| TGCTTCCTTCCTTCTCCTTT+GGG | + | 50595:5132-5151 | MS.gene23101:CDS | 45.0% | |
| TGTTGTGGCGTTCTGTTTGT+TGG | + | 50595:5094-5113 | MS.gene23101:CDS | 45.0% | |
| TTACACAGGTCTGCCTTAGT+GGG | + | 50595:7880-7899 | MS.gene23101:CDS | 45.0% | |
| TTGGTTTATGTTCCATCCGC+CGG | + | 50595:7042-7061 | MS.gene23101:CDS | 45.0% | |
| ! | GGGGCAAACACATTTTGTTG+TGG | + | 50595:5079-5098 | MS.gene23101:CDS | 45.0% |
| ! | GGGTTTGTTTCCGATAGTGA+AGG | - | 50595:7666-7685 | None:intergenic | 45.0% |
| ! | TGGTTGATTTCAGCCACAAC+AGG | - | 50595:6779-6798 | None:intergenic | 45.0% |
| !! | ACTTGGATGATGGAACCCAA+AGG | - | 50595:5391-5410 | None:intergenic | 45.0% |
| !! | CTTATCACTGATTCACCGGA+TGG | - | 50595:7611-7630 | None:intergenic | 45.0% |
| !! | GGAAGTCTTTCTTTTCTGGC+AGG | + | 50595:5862-5881 | MS.gene23101:CDS | 45.0% |
| !! | TCACCACCCTTTTTCGCATT+AGG | - | 50595:6143-6162 | None:intergenic | 45.0% |
| !!! | GGTGGTGAATTGGTTTTTGG+TGG | + | 50595:6155-6174 | MS.gene23101:CDS | 45.0% |
| ATTAGATTGATCCCGGCGGA+TGG | - | 50595:7057-7076 | None:intergenic | 50.0% | |
| CAAAGGAGAAGGAAGGAAGC+AGG | - | 50595:5133-5152 | None:intergenic | 50.0% | |
| CTCCTTCAGCTCCAATAGCA+TGG | - | 50595:6799-6818 | None:intergenic | 50.0% | |
| CTGCTTCCTTCCTTCTCCTT+TGG | + | 50595:5131-5150 | MS.gene23101:CDS | 50.0% | |
| GACCTGTGTAATGCCTTCTC+CGG | - | 50595:7871-7890 | None:intergenic | 50.0% | |
| GAGAGTCTTCCAAGTCCATC+CGG | + | 50595:7593-7612 | MS.gene23101:CDS | 50.0% | |
| GGAAGCTTACCCCTGATACT+AGG | - | 50595:6880-6899 | None:intergenic | 50.0% | |
| TCCGCCGGGATCAATCTAAT+AGG | + | 50595:7057-7076 | MS.gene23101:CDS | 50.0% | |
| TCCTCACACCAGAACAGGTT+CGG | + | 50595:7690-7709 | MS.gene23101:intron | 50.0% | |
| TGGTTTATGTTCCATCCGCC+GGG | + | 50595:7043-7062 | MS.gene23101:CDS | 50.0% | |
| TGTTCTGGTGTGAGGACGAA+GGG | - | 50595:7686-7705 | None:intergenic | 50.0% | |
| TTCATTGAGGCTACCCGAGA+AGG | + | 50595:5841-5860 | MS.gene23101:CDS | 50.0% | |
| ! | ACTGATTCACCGGATGGACT+TGG | - | 50595:7605-7624 | None:intergenic | 50.0% |
| ! | AGGTACTGTAGCTTCATCGC+TGG | - | 50595:5273-5292 | None:intergenic | 50.0% |
| ! | TGTGCTGCTATTGTGGACTC+AGG | + | 50595:6647-6666 | MS.gene23101:CDS | 50.0% |
| !! | AACCGGAGAAGGCATTACAC+AGG | + | 50595:7866-7885 | MS.gene23101:CDS | 50.0% |
| !! | GGATGATGGAACCCAAAGGT+TGG | - | 50595:5387-5406 | None:intergenic | 50.0% |
| CTGTTCTGGTGTGAGGACGA+AGG | - | 50595:7687-7706 | None:intergenic | 55.0% | |
| CTTCGTCCTCACACCAGAAC+AGG | + | 50595:7685-7704 | MS.gene23101:CDS | 55.0% | |
| TCCGAACCTGTTCTGGTGTG+AGG | - | 50595:7694-7713 | None:intergenic | 55.0% | |
| ! | AGGTGGCTGTGCTGCTATTG+TGG | + | 50595:6640-6659 | MS.gene23101:CDS | 55.0% |
| ! | TGGCAGTGCTGGGATTGAGA+TGG | + | 50595:7320-7339 | MS.gene23101:intron | 55.0% |
| ! | CAGAGTGGACCCTTTGGAGG+AGG | - | 50595:7924-7943 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50595 | gene | 5077 | 7943 | 5077 | ID=MS.gene23101 |
| 50595 | mRNA | 5077 | 7943 | 5077 | ID=MS.gene23101.t1;Parent=MS.gene23101 |
| 50595 | exon | 5077 | 5421 | 5077 | ID=MS.gene23101.t1.exon1;Parent=MS.gene23101.t1 |
| 50595 | CDS | 5077 | 5421 | 5077 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 5516 | 5576 | 5516 | ID=MS.gene23101.t1.exon2;Parent=MS.gene23101.t1 |
| 50595 | CDS | 5516 | 5576 | 5516 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 5657 | 5751 | 5657 | ID=MS.gene23101.t1.exon3;Parent=MS.gene23101.t1 |
| 50595 | CDS | 5657 | 5751 | 5657 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 5838 | 5950 | 5838 | ID=MS.gene23101.t1.exon4;Parent=MS.gene23101.t1 |
| 50595 | CDS | 5838 | 5950 | 5838 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 6076 | 6244 | 6076 | ID=MS.gene23101.t1.exon5;Parent=MS.gene23101.t1 |
| 50595 | CDS | 6076 | 6244 | 6076 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 6329 | 6368 | 6329 | ID=MS.gene23101.t1.exon6;Parent=MS.gene23101.t1 |
| 50595 | CDS | 6329 | 6368 | 6329 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 6630 | 6694 | 6630 | ID=MS.gene23101.t1.exon7;Parent=MS.gene23101.t1 |
| 50595 | CDS | 6630 | 6694 | 6630 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 6776 | 6889 | 6776 | ID=MS.gene23101.t1.exon8;Parent=MS.gene23101.t1 |
| 50595 | CDS | 6776 | 6889 | 6776 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 7014 | 7078 | 7014 | ID=MS.gene23101.t1.exon9;Parent=MS.gene23101.t1 |
| 50595 | CDS | 7014 | 7078 | 7014 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 7326 | 7479 | 7326 | ID=MS.gene23101.t1.exon10;Parent=MS.gene23101.t1 |
| 50595 | CDS | 7326 | 7479 | 7326 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 7587 | 7706 | 7587 | ID=MS.gene23101.t1.exon11;Parent=MS.gene23101.t1 |
| 50595 | CDS | 7587 | 7706 | 7587 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| 50595 | exon | 7855 | 7943 | 7855 | ID=MS.gene23101.t1.exon12;Parent=MS.gene23101.t1 |
| 50595 | CDS | 7855 | 7943 | 7855 | ID=cds.MS.gene23101.t1;Parent=MS.gene23101.t1 |
| Gene Sequence |
| Protein sequence |
