AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23111

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23111.t1 MTR_7g113110 94.362 337 15 3 22 356 31 365 0.0 536
MS.gene23111.t1 MTR_1g083310 33.333 408 197 16 14 356 5 402 3.29e-34 130
MS.gene23111.t1 MTR_4g119820 47.541 122 61 1 19 137 69 190 1.95e-24 102
MS.gene23111.t1 MTR_1g107565 56.000 75 33 0 14 88 3 77 3.88e-22 96.7
MS.gene23111.t1 MTR_7g108560 50.617 81 36 1 12 88 6 86 2.75e-19 87.4
MS.gene23111.t1 MTR_2g022250 55.882 68 30 0 21 88 7 74 2.54e-18 86.3
MS.gene23111.t1 MTR_4g117220 52.055 73 35 0 21 93 7 79 1.72e-17 84.0
MS.gene23111.t1 MTR_4g117140 52.055 73 35 0 21 93 7 79 1.74e-17 84.0
MS.gene23111.t1 MTR_1g082650 52.941 68 32 0 21 88 7 74 6.87e-17 82.4
MS.gene23111.t1 MTR_2g436830 54.167 72 33 0 19 90 10 81 3.91e-15 75.5
MS.gene23111.t1 MTR_2g022240 54.412 68 31 0 21 88 7 74 6.31e-15 76.3
MS.gene23111.t1 MTR_1g092670 45.714 70 38 0 24 93 4 73 7.38e-14 66.6
MS.gene23111.t1 MTR_3g067750 43.478 69 39 0 19 87 7 75 1.82e-13 69.3
MS.gene23111.t1 MTR_2g018790 37.500 112 64 2 26 136 10 116 1.14e-12 68.2
MS.gene23111.t1 MTR_8g091420 50.000 62 31 0 28 89 33 94 2.99e-12 64.3
MS.gene23111.t1 MTR_3g087770 48.387 62 32 0 28 89 34 95 5.52e-12 63.5
MS.gene23111.t1 MTR_6g026890 38.710 62 38 0 28 89 20 81 6.60e-12 63.2
MS.gene23111.t1 MTR_3g073670 44.444 63 35 0 27 89 29 91 8.28e-12 62.8
MS.gene23111.t1 MTR_1g030630 41.935 62 36 0 28 89 29 90 2.79e-11 61.2
MS.gene23111.t1 MTR_3g117890 40.000 75 39 2 16 89 23 92 3.73e-11 61.2
MS.gene23111.t1 MTR_2g091235 47.541 61 32 0 28 88 6 66 3.81e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23111.t1 AT1G56210 32.011 353 192 10 24 356 40 364 1.11e-23 100
MS.gene23111.t1 AT5G27690 48.454 97 49 1 19 115 25 120 1.01e-21 95.1
MS.gene23111.t1 AT3G06130 52.941 68 32 0 21 88 7 74 3.83e-18 85.9
MS.gene23111.t1 AT3G06130 52.941 68 32 0 21 88 7 74 4.95e-18 84.7
MS.gene23111.t1 AT1G23000 48.000 75 39 0 14 88 3 77 8.98e-18 84.0
MS.gene23111.t1 AT1G23000 48.000 75 39 0 14 88 63 137 3.60e-17 82.8
MS.gene23111.t1 AT1G66240 41.791 67 39 0 22 88 31 97 4.87e-14 68.2
MS.gene23111.t1 AT3G05220 45.455 66 36 0 23 88 9 74 6.38e-14 73.2
MS.gene23111.t1 AT5G37860 46.970 66 35 0 23 88 9 74 1.79e-13 70.1
MS.gene23111.t1 AT5G19090 32.624 141 70 2 21 154 7 129 2.46e-13 71.6
MS.gene23111.t1 AT5G19090 32.624 141 70 2 21 154 7 129 2.46e-13 71.6
MS.gene23111.t1 AT5G19090 32.624 141 70 2 21 154 7 129 2.46e-13 71.6
MS.gene23111.t1 AT5G19090 32.624 141 70 2 21 154 7 129 2.91e-13 70.9
MS.gene23111.t1 AT5G19090 32.624 141 70 2 21 154 7 129 2.91e-13 70.9
MS.gene23111.t1 AT3G56891 38.571 70 43 0 20 89 12 81 3.05e-12 64.7
MS.gene23111.t1 AT1G06330 45.902 61 33 0 28 88 6 66 9.30e-12 62.8
MS.gene23111.t1 AT3G56240 39.706 68 41 0 22 89 1 68 1.00e-11 62.0
MS.gene23111.t1 AT3G56240 39.706 68 41 0 22 89 1 68 1.00e-11 62.0
MS.gene23111.t1 AT3G56891 41.379 58 34 0 32 89 1 58 5.41e-11 60.5

Find 103 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAGGACAAGTTTCATTTA+TGG 0.212169 7.2:+4027565 MS.gene23111:CDS
GGTCATGGGCCTTATGGGCC+TGG 0.225833 7.2:+4027536 MS.gene23111:CDS
ATGCATGGTCATGGGCCTTA+TGG 0.229042 7.2:+4027530 MS.gene23111:CDS
GGGCCTTATGGGCCTGGGTC+TGG 0.244736 7.2:+4027542 MS.gene23111:CDS
AAATTGTACACCGCCTCTTC+CGG 0.272718 7.2:-4027288 None:intergenic
GGTGGTGGTGGAAGGGGTGG+TGG 0.278444 7.2:+4027257 MS.gene23111:CDS
CCAGGACAAGTTTCATTTAT+GGG 0.278854 7.2:+4027566 MS.gene23111:CDS
GGTTGTAGCTGTTGTTCTTC+TGG 0.302379 7.2:-4026655 None:intergenic
AACCTCCTTCTTCCGGTGAT+TGG 0.318819 7.2:+4027495 MS.gene23111:CDS
TTTCCTCTGCAACCGGTAAC+TGG 0.321862 7.2:-4027361 None:intergenic
CCATAACTCAGCTCGTTTAC+CGG 0.326210 7.2:-4027054 None:intergenic
AAGGAATGGAATTTACTATC+AGG 0.340004 7.2:+4027433 MS.gene23111:CDS
TCCAGCCGGTAGCCAGTTAC+CGG 0.342016 7.2:+4027349 MS.gene23111:CDS
ATTTGTTACCATCTATGCTT+TGG 0.343245 7.2:-4026844 None:intergenic
TGCATGGTCATGGGCCTTAT+GGG 0.343259 7.2:+4027531 MS.gene23111:CDS
AATTGTACACCGCCTCTTCC+GGG 0.372292 7.2:-4027287 None:intergenic
CTACCGAAGGTGGTGGTGGA+AGG 0.383442 7.2:+4027249 MS.gene23111:CDS
CCCATAAATGAAACTTGTCC+TGG 0.384336 7.2:-4027566 None:intergenic
GTCATGGGCCTTATGGGCCT+GGG 0.388210 7.2:+4027537 MS.gene23111:CDS
TGATTTACCTTGCACATAAG+AGG 0.389371 7.2:-4026676 None:intergenic
ACTTTCGAACCTCCTTCTTC+CGG 0.401298 7.2:+4027488 MS.gene23111:CDS
TTCCGTGGTGGACTCTCATT+AGG 0.403542 7.2:-4027596 None:intergenic
CAACGAAAACGAAGCTGTTA+AGG 0.405982 7.2:+4027214 MS.gene23111:CDS
GTGGTGGAAGGGGTGGTGGA+TGG 0.408791 7.2:+4027261 MS.gene23111:CDS
GGTGGATGGCCACCCGGAAG+AGG 0.416601 7.2:+4027275 MS.gene23111:CDS
TCTTCTGGCGGTGGCGGTGG+CGG 0.421326 7.2:-4026640 None:intergenic
TATGGGCCTGGGTCTGGCCC+AGG 0.421646 7.2:+4027548 MS.gene23111:CDS
AAAGTTCTCCAAAGCATAGA+TGG 0.424961 7.2:+4026836 MS.gene23111:CDS
GGGCCAGACCCAGGCCCATA+AGG 0.427386 7.2:-4027545 None:intergenic
TTTCGTTGCCACCATCGGTC+TGG 0.428436 7.2:-4027199 None:intergenic
TCTGGCGGTGGCGGTGGCGG+TGG 0.430109 7.2:-4026637 None:intergenic
GAAGGTGGTGGTGGAAGGGG+TGG 0.432565 7.2:+4027254 MS.gene23111:CDS
ACCCCTTCCACCACCACCTT+CGG 0.446159 7.2:-4027252 None:intergenic
ACCGAAGGTGGTGGTGGAAG+GGG 0.451292 7.2:+4027251 MS.gene23111:CDS
CATGCAACCTTGACAATGAA+TGG 0.452710 7.2:-4026801 None:intergenic
CACATAACTGAGCAAGCATT+AGG 0.469098 7.2:-4027860 None:intergenic
ACCGGTAACTGGCTACCGGC+TGG 0.470086 7.2:-4027350 None:intergenic
TGTTCTTCTGGCGGTGGCGG+TGG 0.473990 7.2:-4026643 None:intergenic
TGCGTATAAGCGTATGAATA+CGG 0.475765 7.2:-4027740 None:intergenic
ATTAAGATACTAACACAAAC+CGG 0.495120 7.2:+4027035 MS.gene23111:CDS
CAGAATCAGATGCATGGTCA+TGG 0.495583 7.2:+4027521 MS.gene23111:CDS
TTCATCACTAAATAATTCAA+AGG 0.496216 7.2:-4027834 None:intergenic
GGTGGACTCTCATTAGGTGG+TGG 0.503750 7.2:-4027590 None:intergenic
TACCGAAGGTGGTGGTGGAA+GGG 0.506260 7.2:+4027250 MS.gene23111:CDS
TGTTGTTCTTCTGGCGGTGG+CGG 0.512934 7.2:-4026646 None:intergenic
CTCATAACATGTCTCACCTC+TGG 0.514228 7.2:-4027323 None:intergenic
AGGGGTGGTGGATGGCCACC+CGG 0.514999 7.2:+4027269 MS.gene23111:CDS
GACGGAGAAAGCAGTGATGA+AGG 0.519338 7.2:+4027173 MS.gene23111:CDS
CCACACACCGTAGGAGAAGC+TGG 0.521751 7.2:-4027647 None:intergenic
ACTTGTCCTGGGCCAGACCC+AGG 0.526706 7.2:-4027554 None:intergenic
CCGGTAAACGAGCTGAGTTA+TGG 0.526901 7.2:+4027054 MS.gene23111:CDS
TTTACTATCAGGGGCAAAGA+GGG 0.536147 7.2:+4027444 MS.gene23111:CDS
GTGGACTCTCATTAGGTGGT+GGG 0.543443 7.2:-4027589 None:intergenic
AGAGTCTCCATTCATTGTCA+AGG 0.543948 7.2:+4026794 MS.gene23111:CDS
AGCTGTTGTTCTTCTGGCGG+TGG 0.544196 7.2:-4026649 None:intergenic
ACAATCGCCATGGAGAATGC+GGG 0.544675 7.2:+4027389 MS.gene23111:CDS
AGGAATGGAATTTACTATCA+GGG 0.546763 7.2:+4027434 MS.gene23111:CDS
GCACCGTATCTCATAGAAGT+AGG 0.547727 7.2:-4027692 None:intergenic
GACGGTGGATACAGAAGGAA+TGG 0.549953 7.2:+4027419 MS.gene23111:CDS
TGCAACCGGTAACTGGCTAC+CGG 0.560460 7.2:-4027354 None:intergenic
TGATTCCAATCACCGGAAGA+AGG 0.561560 7.2:-4027500 None:intergenic
AGAATCAGATGCATGGTCAT+GGG 0.564851 7.2:+4027522 MS.gene23111:CDS
TACAATCGCCATGGAGAATG+CGG 0.565300 7.2:+4027388 MS.gene23111:CDS
GTTTAACCCCGCATTCTCCA+TGG 0.567174 7.2:-4027396 None:intergenic
CTGATTCTGATTCCAATCAC+CGG 0.572547 7.2:-4027507 None:intergenic
CCAGCTTCTCCTACGGTGTG+TGG 0.578619 7.2:+4027647 MS.gene23111:CDS
GGATGGCCACCCGGAAGAGG+CGG 0.580046 7.2:+4027278 MS.gene23111:CDS
GAAGGTAACCAGACCGATGG+TGG 0.582367 7.2:+4027191 MS.gene23111:CDS
GCTGCTACCGAAGGTGGTGG+TGG 0.582434 7.2:+4027245 MS.gene23111:CDS
CCATAAATGAAACTTGTCCT+GGG 0.584326 7.2:-4027565 None:intergenic
TATCCTACTTCTATGAGATA+CGG 0.591924 7.2:+4027689 MS.gene23111:CDS
TAGTATCTTAATCAGTGTAT+CGG 0.600120 7.2:-4027024 None:intergenic
GTTGTTGTTGCTGCTACCGA+AGG 0.601315 7.2:+4027236 MS.gene23111:CDS
TCACGCACCAGCTTCTCCTA+CGG 0.604394 7.2:+4027640 MS.gene23111:CDS
AATCAGTGTATCGGTGTCGA+CGG 0.605481 7.2:-4027015 None:intergenic
CGTGGTGGACTCTCATTAGG+TGG 0.609935 7.2:-4027593 None:intergenic
GTTGTTGCTGCTACCGAAGG+TGG 0.610212 7.2:+4027239 MS.gene23111:CDS
ATTTACTATCAGGGGCAAAG+AGG 0.612674 7.2:+4027443 MS.gene23111:CDS
TGCGGTGGGTATTGATTCCG+TGG 0.613009 7.2:-4027611 None:intergenic
GTTGCTGCTACCGAAGGTGG+TGG 0.614150 7.2:+4027242 MS.gene23111:CDS
GGAATGGAATTTACTATCAG+GGG 0.616678 7.2:+4027435 MS.gene23111:CDS
GCTACAACCTCTTATGTGCA+AGG 0.618097 7.2:+4026669 MS.gene23111:CDS
TAGCCAGTTACCGGTTGCAG+AGG 0.621667 7.2:+4027358 MS.gene23111:CDS
GTGCGTGATGATAATGCGGT+GGG 0.627112 7.2:-4027625 None:intergenic
TGGAATCAGAATCAGATGCA+TGG 0.628714 7.2:+4027515 MS.gene23111:CDS
GGGCAAAGAGGGAATAGTGA+AGG 0.637760 7.2:+4027455 MS.gene23111:CDS
AAGAAACCAAAACCAGAGAA+CGG 0.639417 7.2:+4027125 MS.gene23111:CDS
GCTTCTCCTACGGTGTGTGG+TGG 0.640745 7.2:+4027650 MS.gene23111:CDS
TAAACGACGGTGGATACAGA+AGG 0.642336 7.2:+4027414 MS.gene23111:CDS
CAATCGCCATGGAGAATGCG+GGG 0.645930 7.2:+4027390 MS.gene23111:CDS
TGTAGCTGTTGTTCTTCTGG+CGG 0.652651 7.2:-4026652 None:intergenic
TTCCAATCACCGGAAGAAGG+AGG 0.665191 7.2:-4027497 None:intergenic
GGTGCGTGATGATAATGCGG+TGG 0.667198 7.2:-4027626 None:intergenic
ATTTCAAGAAATAAAGCCAG+AGG 0.668070 7.2:+4027307 MS.gene23111:CDS
GATGAAGGTAACCAGACCGA+TGG 0.668071 7.2:+4027188 MS.gene23111:CDS
ACAGATCAGAAACAGAGTGA+CGG 0.668136 7.2:+4027155 MS.gene23111:CDS
AATGCGGGGTTAAACGACGG+TGG 0.700799 7.2:+4027404 MS.gene23111:CDS
AAGTTTCCACCACACACCGT+AGG 0.702698 7.2:-4027656 None:intergenic
GAGAATGCGGGGTTAAACGA+CGG 0.713153 7.2:+4027401 MS.gene23111:CDS
TGTACACCGCCTCTTCCGGG+TGG 0.716335 7.2:-4027284 None:intergenic
GCTGGTGCGTGATGATAATG+CGG 0.741467 7.2:-4027629 None:intergenic
CACCTAATGAGAGTCCACCA+CGG 0.748035 7.2:+4027594 MS.gene23111:CDS
GGTGGGTATTGATTCCGTGG+TGG 0.773674 7.2:-4027608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAGAGAGTTATTAAAA+CGG - chr7.2:4026726-4026745 None:intergenic 20.0%
!! TTCATCACTAAATAATTCAA+AGG - chr7.2:4027837-4027856 None:intergenic 20.0%
!!! TTTTTCTTCTTCTTTTTGAT+TGG - chr7.2:4027092-4027111 None:intergenic 20.0%
! ATTAAGATACTAACACAAAC+CGG + chr7.2:4027035-4027054 MS.gene23111:CDS 25.0%
! CAACAAAAAGTAGAAGTAAA+GGG + chr7.2:4026990-4027009 MS.gene23111:CDS 25.0%
! TAGTATCTTAATCAGTGTAT+CGG - chr7.2:4027027-4027046 None:intergenic 25.0%
AAGGAATGGAATTTACTATC+AGG + chr7.2:4027433-4027452 MS.gene23111:CDS 30.0%
AGGAATGGAATTTACTATCA+GGG + chr7.2:4027434-4027453 MS.gene23111:CDS 30.0%
ATTTCAAGAAATAAAGCCAG+AGG + chr7.2:4027307-4027326 MS.gene23111:CDS 30.0%
GCAACAAAAAGTAGAAGTAA+AGG + chr7.2:4026989-4027008 MS.gene23111:CDS 30.0%
TATCCTACTTCTATGAGATA+CGG + chr7.2:4027689-4027708 MS.gene23111:CDS 30.0%
! ATTTGTTACCATCTATGCTT+TGG - chr7.2:4026847-4026866 None:intergenic 30.0%
! CTATGTTCATTTGTTAACTC+AGG + chr7.2:4026939-4026958 MS.gene23111:intron 30.0%
!! AAGTCATGATTTTGATGACT+CGG + chr7.2:4027766-4027785 MS.gene23111:CDS 30.0%
!!! TTTTTGATTGGTTCTGTATC+AGG - chr7.2:4027080-4027099 None:intergenic 30.0%
AAAGTTCTCCAAAGCATAGA+TGG + chr7.2:4026836-4026855 MS.gene23111:CDS 35.0%
AAGAAACCAAAACCAGAGAA+CGG + chr7.2:4027125-4027144 MS.gene23111:CDS 35.0%
CCAGGACAAGTTTCATTTAT+GGG + chr7.2:4027566-4027585 MS.gene23111:CDS 35.0%
CCATAAATGAAACTTGTCCT+GGG - chr7.2:4027568-4027587 None:intergenic 35.0%
GGAATGGAATTTACTATCAG+GGG + chr7.2:4027435-4027454 MS.gene23111:CDS 35.0%
TGATTTACCTTGCACATAAG+AGG - chr7.2:4026679-4026698 None:intergenic 35.0%
TGCGTATAAGCGTATGAATA+CGG - chr7.2:4027743-4027762 None:intergenic 35.0%
ACAGATCAGAAACAGAGTGA+CGG + chr7.2:4027155-4027174 MS.gene23111:CDS 40.0%
AGAATCAGATGCATGGTCAT+GGG + chr7.2:4027522-4027541 MS.gene23111:CDS 40.0%
AGAGTCTCCATTCATTGTCA+AGG + chr7.2:4026794-4026813 MS.gene23111:CDS 40.0%
ATTTACTATCAGGGGCAAAG+AGG + chr7.2:4027443-4027462 MS.gene23111:CDS 40.0%
CAACGAAAACGAAGCTGTTA+AGG + chr7.2:4027214-4027233 MS.gene23111:CDS 40.0%
CACATAACTGAGCAAGCATT+AGG - chr7.2:4027863-4027882 None:intergenic 40.0%
CATGCAACCTTGACAATGAA+TGG - chr7.2:4026804-4026823 None:intergenic 40.0%
CCCAGGACAAGTTTCATTTA+TGG + chr7.2:4027565-4027584 MS.gene23111:CDS 40.0%
CCCATAAATGAAACTTGTCC+TGG - chr7.2:4027569-4027588 None:intergenic 40.0%
CTGATTCTGATTCCAATCAC+CGG - chr7.2:4027510-4027529 None:intergenic 40.0%
GGAAAAAGTTACAATCGCCA+TGG + chr7.2:4027379-4027398 MS.gene23111:CDS 40.0%
GTTATTAAAACGGCATGCAG+AGG - chr7.2:4026716-4026735 None:intergenic 40.0%
TGGAATCAGAATCAGATGCA+TGG + chr7.2:4027515-4027534 MS.gene23111:CDS 40.0%
TTTACTATCAGGGGCAAAGA+GGG + chr7.2:4027444-4027463 MS.gene23111:CDS 40.0%
! CATGTTATGAGTTTTCCAGC+CGG + chr7.2:4027335-4027354 MS.gene23111:CDS 40.0%
!! GTAACTTTTTCCTCTGCAAC+CGG - chr7.2:4027371-4027390 None:intergenic 40.0%
!! TTTTGACCGTTCTCTGGTTT+TGG - chr7.2:4027134-4027153 None:intergenic 40.0%
AAATTGTACACCGCCTCTTC+CGG - chr7.2:4027291-4027310 None:intergenic 45.0%
ACTTTCGAACCTCCTTCTTC+CGG + chr7.2:4027488-4027507 MS.gene23111:CDS 45.0%
CAGAATCAGATGCATGGTCA+TGG + chr7.2:4027521-4027540 MS.gene23111:CDS 45.0%
CCATAACTCAGCTCGTTTAC+CGG - chr7.2:4027057-4027076 None:intergenic 45.0%
CTCATAACATGTCTCACCTC+TGG - chr7.2:4027326-4027345 None:intergenic 45.0%
GCACCGTATCTCATAGAAGT+AGG - chr7.2:4027695-4027714 None:intergenic 45.0%
GCTACAACCTCTTATGTGCA+AGG + chr7.2:4026669-4026688 MS.gene23111:CDS 45.0%
GGTTGTAGCTGTTGTTCTTC+TGG - chr7.2:4026658-4026677 None:intergenic 45.0%
TAAACGACGGTGGATACAGA+AGG + chr7.2:4027414-4027433 MS.gene23111:CDS 45.0%
TACAATCGCCATGGAGAATG+CGG + chr7.2:4027388-4027407 MS.gene23111:CDS 45.0%
TGATTCCAATCACCGGAAGA+AGG - chr7.2:4027503-4027522 None:intergenic 45.0%
TGTAGCTGTTGTTCTTCTGG+CGG - chr7.2:4026655-4026674 None:intergenic 45.0%
! TTCGTTTTCGTTGCCACCAT+CGG - chr7.2:4027207-4027226 None:intergenic 45.0%
!! AATCAGTGTATCGGTGTCGA+CGG - chr7.2:4027018-4027037 None:intergenic 45.0%
!!! TCTGTGTTTTGACCGTTCTC+TGG - chr7.2:4027140-4027159 None:intergenic 45.0%
AACCTCCTTCTTCCGGTGAT+TGG + chr7.2:4027495-4027514 MS.gene23111:CDS 50.0%
AAGTTTCCACCACACACCGT+AGG - chr7.2:4027659-4027678 None:intergenic 50.0%
AATTGTACACCGCCTCTTCC+GGG - chr7.2:4027290-4027309 None:intergenic 50.0%
ACAATCGCCATGGAGAATGC+GGG + chr7.2:4027389-4027408 MS.gene23111:CDS 50.0%
ATGCATGGTCATGGGCCTTA+TGG + chr7.2:4027530-4027549 MS.gene23111:CDS 50.0%
CACCTAATGAGAGTCCACCA+CGG + chr7.2:4027594-4027613 MS.gene23111:CDS 50.0%
CCGGTAAACGAGCTGAGTTA+TGG + chr7.2:4027054-4027073 MS.gene23111:CDS 50.0%
GACGGAGAAAGCAGTGATGA+AGG + chr7.2:4027173-4027192 MS.gene23111:CDS 50.0%
GACGGTGGATACAGAAGGAA+TGG + chr7.2:4027419-4027438 MS.gene23111:CDS 50.0%
GAGAATGCGGGGTTAAACGA+CGG + chr7.2:4027401-4027420 MS.gene23111:CDS 50.0%
GATGAAGGTAACCAGACCGA+TGG + chr7.2:4027188-4027207 MS.gene23111:CDS 50.0%
GGGCAAAGAGGGAATAGTGA+AGG + chr7.2:4027455-4027474 MS.gene23111:CDS 50.0%
GTGGACTCTCATTAGGTGGT+GGG - chr7.2:4027592-4027611 None:intergenic 50.0%
GTTTAACCCCGCATTCTCCA+TGG - chr7.2:4027399-4027418 None:intergenic 50.0%
TTCCAATCACCGGAAGAAGG+AGG - chr7.2:4027500-4027519 None:intergenic 50.0%
TTTCCTCTGCAACCGGTAAC+TGG - chr7.2:4027364-4027383 None:intergenic 50.0%
! GCTGGTGCGTGATGATAATG+CGG - chr7.2:4027632-4027651 None:intergenic 50.0%
! GTGCGTGATGATAATGCGGT+GGG - chr7.2:4027628-4027647 None:intergenic 50.0%
! GTTGTTGTTGCTGCTACCGA+AGG + chr7.2:4027236-4027255 MS.gene23111:CDS 50.0%
! TGCATGGTCATGGGCCTTAT+GGG + chr7.2:4027531-4027550 MS.gene23111:CDS 50.0%
!! TTCCGTGGTGGACTCTCATT+AGG - chr7.2:4027599-4027618 None:intergenic 50.0%
AATGCGGGGTTAAACGACGG+TGG + chr7.2:4027404-4027423 MS.gene23111:CDS 55.0%
AGCTGTTGTTCTTCTGGCGG+TGG - chr7.2:4026652-4026671 None:intergenic 55.0%
CAATCGCCATGGAGAATGCG+GGG + chr7.2:4027390-4027409 MS.gene23111:CDS 55.0%
GAAGGTAACCAGACCGATGG+TGG + chr7.2:4027191-4027210 MS.gene23111:CDS 55.0%
GTTGTTGCTGCTACCGAAGG+TGG + chr7.2:4027239-4027258 MS.gene23111:CDS 55.0%
TCACGCACCAGCTTCTCCTA+CGG + chr7.2:4027640-4027659 MS.gene23111:CDS 55.0%
TGCAACCGGTAACTGGCTAC+CGG - chr7.2:4027357-4027376 None:intergenic 55.0%
TGTTGTTCTTCTGGCGGTGG+CGG - chr7.2:4026649-4026668 None:intergenic 55.0%
TTTCGTTGCCACCATCGGTC+TGG - chr7.2:4027202-4027221 None:intergenic 55.0%
! GGTGCGTGATGATAATGCGG+TGG - chr7.2:4027629-4027648 None:intergenic 55.0%
! GGTGGACTCTCATTAGGTGG+TGG - chr7.2:4027593-4027612 None:intergenic 55.0%
! TAGCCAGTTACCGGTTGCAG+AGG + chr7.2:4027358-4027377 MS.gene23111:CDS 55.0%
!! CGTGGTGGACTCTCATTAGG+TGG - chr7.2:4027596-4027615 None:intergenic 55.0%
!! GGTGGGTATTGATTCCGTGG+TGG - chr7.2:4027611-4027630 None:intergenic 55.0%
!! TACCGAAGGTGGTGGTGGAA+GGG + chr7.2:4027250-4027269 MS.gene23111:CDS 55.0%
!! TGCGGTGGGTATTGATTCCG+TGG - chr7.2:4027614-4027633 None:intergenic 55.0%
ACCCCTTCCACCACCACCTT+CGG - chr7.2:4027255-4027274 None:intergenic 60.0%
CCACACACCGTAGGAGAAGC+TGG - chr7.2:4027650-4027669 None:intergenic 60.0%
CCAGCTTCTCCTACGGTGTG+TGG + chr7.2:4027647-4027666 MS.gene23111:CDS 60.0%
GCTTCTCCTACGGTGTGTGG+TGG + chr7.2:4027650-4027669 MS.gene23111:CDS 60.0%
GTTGCTGCTACCGAAGGTGG+TGG + chr7.2:4027242-4027261 MS.gene23111:CDS 60.0%
TCCAGCCGGTAGCCAGTTAC+CGG + chr7.2:4027349-4027368 MS.gene23111:CDS 60.0%
! GTCATGGGCCTTATGGGCCT+GGG + chr7.2:4027537-4027556 MS.gene23111:CDS 60.0%
!! ACCGAAGGTGGTGGTGGAAG+GGG + chr7.2:4027251-4027270 MS.gene23111:CDS 60.0%
!! CTACCGAAGGTGGTGGTGGA+AGG + chr7.2:4027249-4027268 MS.gene23111:CDS 60.0%
ACCGGTAACTGGCTACCGGC+TGG - chr7.2:4027353-4027372 None:intergenic 65.0%
ACTTGTCCTGGGCCAGACCC+AGG - chr7.2:4027557-4027576 None:intergenic 65.0%
TGTACACCGCCTCTTCCGGG+TGG - chr7.2:4027287-4027306 None:intergenic 65.0%
! GCTGCTACCGAAGGTGGTGG+TGG + chr7.2:4027245-4027264 MS.gene23111:CDS 65.0%
! GGTCATGGGCCTTATGGGCC+TGG + chr7.2:4027536-4027555 MS.gene23111:CDS 65.0%
! TGTTCTTCTGGCGGTGGCGG+TGG - chr7.2:4026646-4026665 None:intergenic 65.0%
!! GAAGGTGGTGGTGGAAGGGG+TGG + chr7.2:4027254-4027273 MS.gene23111:CDS 65.0%
!! GTGGTGGAAGGGGTGGTGGA+TGG + chr7.2:4027261-4027280 MS.gene23111:CDS 65.0%
GGATGGCCACCCGGAAGAGG+CGG + chr7.2:4027278-4027297 MS.gene23111:CDS 70.0%
GGGCCAGACCCAGGCCCATA+AGG - chr7.2:4027548-4027567 None:intergenic 70.0%
GGTGGATGGCCACCCGGAAG+AGG + chr7.2:4027275-4027294 MS.gene23111:CDS 70.0%
TATGGGCCTGGGTCTGGCCC+AGG + chr7.2:4027548-4027567 MS.gene23111:CDS 70.0%
! GGGCCTTATGGGCCTGGGTC+TGG + chr7.2:4027542-4027561 MS.gene23111:CDS 70.0%
! TCTTCTGGCGGTGGCGGTGG+CGG - chr7.2:4026643-4026662 None:intergenic 70.0%
!! AGGGGTGGTGGATGGCCACC+CGG + chr7.2:4027269-4027288 MS.gene23111:CDS 70.0%
!! GGTGGTGGTGGAAGGGGTGG+TGG + chr7.2:4027257-4027276 MS.gene23111:CDS 70.0%
!! TCTGGCGGTGGCGGTGGCGG+TGG - chr7.2:4026640-4026659 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4026619 4027883 4026619 ID=MS.gene23111
chr7.2 mRNA 4026619 4027883 4026619 ID=MS.gene23111.t1;Parent=MS.gene23111
chr7.2 exon 4026619 4026690 4026619 ID=MS.gene23111.t1.exon1;Parent=MS.gene23111.t1
chr7.2 CDS 4026619 4026690 4026619 ID=cds.MS.gene23111.t1;Parent=MS.gene23111.t1
chr7.2 exon 4026782 4026857 4026782 ID=MS.gene23111.t1.exon2;Parent=MS.gene23111.t1
chr7.2 CDS 4026782 4026857 4026782 ID=cds.MS.gene23111.t1;Parent=MS.gene23111.t1
chr7.2 exon 4026961 4027883 4026961 ID=MS.gene23111.t1.exon3;Parent=MS.gene23111.t1
chr7.2 CDS 4026961 4027883 4026961 ID=cds.MS.gene23111.t1;Parent=MS.gene23111.t1
Gene Sequence

>MS.gene23111

ATGGAAGCAACAGAAACACCACCGCCACCGCCACCGCCAGAAGAACAACAGCTACAACCTCTTATGTGCAAGGTAAATCAAACATTCATTCATTCCTCTGCATGCCGTTTTAATAACTCTCTTTCATTACTTCTAACATACGTTTCTGTTCTTGTTCTTTCAGAGCTGTACGTTAAGAGTCTCCATTCATTGTCAAGGTTGCATGAGAAAAGTCAAAAAAGTTCTCCAAAGCATAGATGGTAACAAATCAATGACATTCAAAAGTCAAAACTCAATATCTATATATTATTTTTTGTTTTCATTTCACGACTTTGTTAATACTATGTTCATTTGTTAACTCAGGTGTTTATCAAACAACTATTGATTTGAAGCAACAAAAAGTAGAAGTAAAGGGCACCGTCGACACCGATACACTGATTAAGATACTAACACAAACCGGTAAACGAGCTGAGTTATGGCCTGATACAGAACCAATCAAAAAGAAGAAGAAAAAGAAGAAGAAAAAGAAGAAACCAAAACCAGAGAACGGTCAAAACACAGATCAGAAACAGAGTGACGGAGAAAGCAGTGATGAAGGTAACCAGACCGATGGTGGCAACGAAAACGAAGCTGTTAAGGTTGTTGTTGCTGCTACCGAAGGTGGTGGTGGAAGGGGTGGTGGATGGCCACCCGGAAGAGGCGGTGTACAATTTCAAGAAATAAAGCCAGAGGTGAGACATGTTATGAGTTTTCCAGCCGGTAGCCAGTTACCGGTTGCAGAGGAAAAAGTTACAATCGCCATGGAGAATGCGGGGTTAAACGACGGTGGATACAGAAGGAATGGAATTTACTATCAGGGGCAAAGAGGGAATAGTGAAGGTTTAAATGTTACTTTCGAACCTCCTTCTTCCGGTGATTGGAATCAGAATCAGATGCATGGTCATGGGCCTTATGGGCCTGGGTCTGGCCCAGGACAAGTTTCATTTATGGGCCCACCACCTAATGAGAGTCCACCACGGAATCAATACCCACCGCATTATCATCACGCACCAGCTTCTCCTACGGTGTGTGGTGGAAACTTACATACAGCGTATCCTACTTCTATGAGATACGGTGCATCGTATTGTACTTCGTCTTCACAACCGTATTCATACGCTTATACGCATCAAAGTCATGATTTTGATGACTCGGAATCTTATACTTATACTACATCATCTCGTTCACGTACGTCAAATTCCTTTGAATTATTTAGTGATGAAAATCCTAATGCTTGCTCAGTTATGTGA
Protein sequence

>MS.gene23111.t1

MEATETPPPPPPPEEQQLQPLMCKSCTLRVSIHCQGCMRKVKKVLQSIDGVYQTTIDLKQQKVEVKGTVDTDTLIKILTQTGKRAELWPDTEPIKKKKKKKKKKKKPKPENGQNTDQKQSDGESSDEGNQTDGGNENEAVKVVVAATEGGGGRGGGWPPGRGGVQFQEIKPEVRHVMSFPAGSQLPVAEEKVTIAMENAGLNDGGYRRNGIYYQGQRGNSEGLNVTFEPPSSGDWNQNQMHGHGPYGPGSGPGQVSFMGPPPNESPPRNQYPPHYHHAPASPTVCGGNLHTAYPTSMRYGASYCTSSSQPYSYAYTHQSHDFDDSESYTYTTSSRSRTSNSFELFSDENPNACSVM