Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23133.t1 | XP_013450452.1 | 89.8 | 912 | 90 | 2 | 7 | 917 | 1 | 910 | 0.00E+00 | 1503.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23133.t1 | A0A072UFB2 | 89.8 | 912 | 90 | 2 | 7 | 917 | 1 | 910 | 0.0e+00 | 1503.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050755 | MS.gene23133 | 0.910691 | 1.41E-82 | -1.69E-46 |
| MS.gene050756 | MS.gene23133 | 0.86118 | 1.23E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGAAAAATGTATAAA+AGG | - | 51760:10808-10827 | None:intergenic | 10.0% |
| !!! | CAATTTTATATGTATTATAA+GGG | - | 51760:11119-11138 | None:intergenic | 10.0% |
| !! | AATAAGCTAAAAACATATTA+TGG | - | 51760:8131-8150 | None:intergenic | 15.0% |
| !!! | ATTGAAATTGTTTTAGATAA+AGG | + | 51760:8505-8524 | MS.gene23133:intron | 15.0% |
| !!! | GCAATTTTATATGTATTATA+AGG | - | 51760:11120-11139 | None:intergenic | 15.0% |
| !!! | GTAAAATAATTTTACACTAA+AGG | - | 51760:10905-10924 | None:intergenic | 15.0% |
| !!! | TTTGATTTATTTTTTTGGTT+TGG | + | 51760:8480-8499 | MS.gene23133:intron | 15.0% |
| !! | AAAAATGTATAAAAGGCTAA+AGG | - | 51760:10801-10820 | None:intergenic | 20.0% |
| !! | AACAATTATTCTCAGTAAAT+TGG | - | 51760:10412-10431 | None:intergenic | 20.0% |
| !! | TATTCTCATTTAACAAGTAA+AGG | + | 51760:9250-9269 | MS.gene23133:CDS | 20.0% |
| !!! | AAATATTATGTGTTTTGGAT+GGG | - | 51760:9678-9697 | None:intergenic | 20.0% |
| !!! | AGTTGTAAAATTGCATTTTA+TGG | - | 51760:9782-9801 | None:intergenic | 20.0% |
| !!! | TTGAGAAATATTATGTGTTT+TGG | - | 51760:9683-9702 | None:intergenic | 20.0% |
| ! | AAATCATTTCTTTCATGATC+AGG | - | 51760:9748-9767 | None:intergenic | 25.0% |
| ! | AATCACATCTCATATATGTT+AGG | + | 51760:10936-10955 | MS.gene23133:intron | 25.0% |
| ! | ATACTCAGTTTCATATGTAA+TGG | + | 51760:10299-10318 | MS.gene23133:intron | 25.0% |
| ! | ATAGCTTACACGAAAATATT+TGG | + | 51760:8188-8207 | MS.gene23133:intron | 25.0% |
| ! | CATATTTGTTCATCAATGTT+TGG | + | 51760:11048-11067 | MS.gene23133:intron | 25.0% |
| ! | GAAAAAAGAAGAATTGGAAA+TGG | + | 51760:7811-7830 | MS.gene23133:CDS | 25.0% |
| ! | GAATAATATATGACCATGTT+TGG | - | 51760:8287-8306 | None:intergenic | 25.0% |
| ! | GAATATGTACAGAAAATACT+TGG | + | 51760:11366-11385 | MS.gene23133:CDS | 25.0% |
| ! | GTAAGAAGTAAAAAGTAAAC+AGG | - | 51760:10758-10777 | None:intergenic | 25.0% |
| ! | TATGTAAGTTTATCCAAACA+TGG | + | 51760:8271-8290 | MS.gene23133:intron | 25.0% |
| ! | TTAACAAGTAAAGGAAAATC+AGG | + | 51760:9259-9278 | MS.gene23133:CDS | 25.0% |
| ! | TTCAAATCAAGAATTCTCAA+GGG | - | 51760:9061-9080 | None:intergenic | 25.0% |
| ! | TTTCAAATCAAGAATTCTCA+AGG | - | 51760:9062-9081 | None:intergenic | 25.0% |
| !! | AAATGCAATTTTACAACTGA+TGG | + | 51760:9784-9803 | MS.gene23133:CDS | 25.0% |
| !! | ATTTAGAATTCCAATCAAAC+AGG | - | 51760:7868-7887 | None:intergenic | 25.0% |
| !! | GTAACAGAAACATTTAGAAT+AGG | - | 51760:8333-8352 | None:intergenic | 25.0% |
| !! | TGAGTCTAATTTTCCAAATT+AGG | + | 51760:10456-10475 | MS.gene23133:intron | 25.0% |
| !!! | AATATTATGTGTTTTGGATG+GGG | - | 51760:9677-9696 | None:intergenic | 25.0% |
| !!! | ATAGCAATAATTTTTTGGGA+TGG | - | 51760:9978-9997 | None:intergenic | 25.0% |
| !!! | ATATTGTTTTGACTATGTGT+TGG | - | 51760:10382-10401 | None:intergenic | 25.0% |
| !!! | ATTTTGAAATCTACCATGTT+TGG | - | 51760:11327-11346 | None:intergenic | 25.0% |
| !!! | CTTTGAGATCAAAACAAATA+AGG | - | 51760:10725-10744 | None:intergenic | 25.0% |
| !!! | GAAATATTATGTGTTTTGGA+TGG | - | 51760:9679-9698 | None:intergenic | 25.0% |
| !!! | GAAATTGTTTTAGATAAAGG+TGG | + | 51760:8508-8527 | MS.gene23133:intron | 25.0% |
| !!! | GGAGATAGCAATAATTTTTT+GGG | - | 51760:9982-10001 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTTGATTTACCTT+TGG | - | 51760:9509-9528 | None:intergenic | 25.0% |
| AAAACTCTATTCCTCGTATA+TGG | - | 51760:9016-9035 | None:intergenic | 30.0% | |
| AATAACCTATTGTGAGTAAC+TGG | - | 51760:8902-8921 | None:intergenic | 30.0% | |
| AATGAAAGTGGAAATGATCT+AGG | + | 51760:10589-10608 | MS.gene23133:CDS | 30.0% | |
| AGAAAACCATTACTCTTGAT+TGG | - | 51760:8929-8948 | None:intergenic | 30.0% | |
| AGAGATACAATGGTTTCAAA+TGG | + | 51760:9319-9338 | MS.gene23133:CDS | 30.0% | |
| AGATCATCATGTGATTTGAT+TGG | + | 51760:10977-10996 | MS.gene23133:intron | 30.0% | |
| ATCTAGCATGGAAGAATAAA+CGG | - | 51760:11178-11197 | None:intergenic | 30.0% | |
| ATGATTAACATTACCAGGTA+AGG | - | 51760:7921-7940 | None:intergenic | 30.0% | |
| ATGGAGAAAAAACGTTCAAA+AGG | + | 51760:7830-7849 | MS.gene23133:CDS | 30.0% | |
| ATGTTTATCTTTCCCTTCAA+TGG | + | 51760:10698-10717 | MS.gene23133:intron | 30.0% | |
| CAAAATAGTATGACTTCCAA+AGG | + | 51760:9490-9509 | MS.gene23133:CDS | 30.0% | |
| CAATGGTTTCAAATGGAAAT+AGG | + | 51760:9326-9345 | MS.gene23133:CDS | 30.0% | |
| CATGCTTCTCATTATAATGA+GGG | + | 51760:8707-8726 | MS.gene23133:CDS | 30.0% | |
| GATCATCATGTGATTTGATT+GGG | + | 51760:10978-10997 | MS.gene23133:intron | 30.0% | |
| GGAAAATTAGACTCAGTAAA+TGG | - | 51760:10451-10470 | None:intergenic | 30.0% | |
| TAGAAACTTGGAAGATGTAA+TGG | + | 51760:11680-11699 | MS.gene23133:CDS | 30.0% | |
| TCAAATAAGTCAAACCAAAC+AGG | - | 51760:8040-8059 | None:intergenic | 30.0% | |
| TCACTATCTATCATATGTGT+CGG | - | 51760:10003-10022 | None:intergenic | 30.0% | |
| TCATGCTTCTCATTATAATG+AGG | + | 51760:8706-8725 | MS.gene23133:CDS | 30.0% | |
| TGAATCAGATTCGTTTATCT+GGG | - | 51760:11220-11239 | None:intergenic | 30.0% | |
| TGTTTATCTTTCCCTTCAAT+GGG | + | 51760:10699-10718 | MS.gene23133:intron | 30.0% | |
| TTTCAAAATATCAAGCGACA+TGG | + | 51760:11338-11357 | MS.gene23133:CDS | 30.0% | |
| ! | AAAGGTACATCATCATTCAA+GGG | + | 51760:9190-9209 | MS.gene23133:CDS | 30.0% |
| ! | AATTCAAAGGAAGGACTTTT+TGG | + | 51760:11626-11645 | MS.gene23133:CDS | 30.0% |
| ! | AGATGTGAAAAAGCTTTTGT+TGG | + | 51760:11570-11589 | MS.gene23133:CDS | 30.0% |
| ! | ATAATGAGAAGCATGAAAGT+TGG | - | 51760:8702-8721 | None:intergenic | 30.0% |
| ! | TATTATAAGGGCATATGCTA+CGG | - | 51760:11107-11126 | None:intergenic | 30.0% |
| ! | TCTTGATTTGAAAGAGAGAT+TGG | + | 51760:9069-9088 | MS.gene23133:CDS | 30.0% |
| ! | TGGTTTGACTTAATCTCATT+CGG | - | 51760:9373-9392 | None:intergenic | 30.0% |
| !! | AAACCAAACAGGTTCTAAAT+AGG | - | 51760:8029-8048 | None:intergenic | 30.0% |
| !! | AGGAGTTCTAATTTTGACAA+AGG | + | 51760:9172-9191 | MS.gene23133:CDS | 30.0% |
| !! | ATATTATGTGTTTTGGATGG+GGG | - | 51760:9676-9695 | None:intergenic | 30.0% |
| !! | TGTTTGGTTTGACTTATTTG+AGG | + | 51760:8039-8058 | MS.gene23133:intron | 30.0% |
| !!! | CGGAGATAGCAATAATTTTT+TGG | - | 51760:9983-10002 | None:intergenic | 30.0% |
| !!! | GATGATGAGTTTTAGAAACT+TGG | + | 51760:11668-11687 | MS.gene23133:CDS | 30.0% |
| AAAAAGCAGACAGCAAAAAG+TGG | - | 51760:8441-8460 | None:intergenic | 35.0% | |
| AAAAGCAGACAGCAAAAAGT+GGG | - | 51760:8440-8459 | None:intergenic | 35.0% | |
| AAACAAATAAGGCCCATTGA+AGG | - | 51760:10714-10733 | None:intergenic | 35.0% | |
| AAACTGCAGACAACCTAATT+TGG | - | 51760:10472-10491 | None:intergenic | 35.0% | |
| AAACTTGGAAGATGTAATGG+TGG | + | 51760:11683-11702 | MS.gene23133:CDS | 35.0% | |
| AACAAATAAGGCCCATTGAA+GGG | - | 51760:10713-10732 | None:intergenic | 35.0% | |
| AACTCTTCAAATTGTAAGCC+TGG | + | 51760:9145-9164 | MS.gene23133:CDS | 35.0% | |
| AAGATCACTCTAAGCTTGAA+AGG | + | 51760:11508-11527 | MS.gene23133:CDS | 35.0% | |
| AAGCTATCTTGTAGAGCTTA+TGG | - | 51760:8155-8174 | None:intergenic | 35.0% | |
| AAGTAACTTTCACTGACAGA+AGG | - | 51760:10652-10671 | None:intergenic | 35.0% | |
| AATATGTGGAACACCAAACA+TGG | + | 51760:11311-11330 | MS.gene23133:CDS | 35.0% | |
| ACCCTATAGAACTTTGATTC+CGG | - | 51760:8405-8424 | None:intergenic | 35.0% | |
| ACCGGAATCAAAGTTCTATA+GGG | + | 51760:8401-8420 | MS.gene23133:CDS | 35.0% | |
| AGATACTTCTTCATCTAGCA+TGG | - | 51760:11190-11209 | None:intergenic | 35.0% | |
| AGGCTTACAATTTGAAGAGT+TGG | - | 51760:9146-9165 | None:intergenic | 35.0% | |
| ATAGAACTTTGATTCCGGTA+AGG | - | 51760:8400-8419 | None:intergenic | 35.0% | |
| ATGGAAACCAGAACTAGATT+TGG | + | 51760:9922-9941 | MS.gene23133:CDS | 35.0% | |
| ATGGCAGAAGAATTTGTCAA+GGG | + | 51760:11402-11421 | MS.gene23133:CDS | 35.0% | |
| ATGGCATGATTAACATTACC+AGG | - | 51760:7926-7945 | None:intergenic | 35.0% | |
| ATGTCAATGTTCAGCCTAAA+AGG | + | 51760:9614-9633 | MS.gene23133:CDS | 35.0% | |
| ATTACATGAGCTGCATTCTT+CGG | - | 51760:8956-8975 | None:intergenic | 35.0% | |
| CACTTGAAAATGAAGTGACA+TGG | + | 51760:11238-11257 | MS.gene23133:CDS | 35.0% | |
| CATGATGATCTCACTTTGTT+AGG | - | 51760:10968-10987 | None:intergenic | 35.0% | |
| CGGAAAAGCAACAAATTTCA+TGG | - | 51760:11087-11106 | None:intergenic | 35.0% | |
| CTAACAAGTTTGTAACACAC+AGG | - | 51760:10865-10884 | None:intergenic | 35.0% | |
| CTATTGTGAGTAACTGGAAT+GGG | - | 51760:8896-8915 | None:intergenic | 35.0% | |
| CTTAAACACACCACTTAAGT+CGG | + | 51760:8769-8788 | MS.gene23133:CDS | 35.0% | |
| GAAAACAGGAAGAAACTGAT+CGG | - | 51760:11147-11166 | None:intergenic | 35.0% | |
| GAACATTTCATCTTGTTCCA+TGG | - | 51760:10172-10191 | None:intergenic | 35.0% | |
| GTGAATCAGATTCGTTTATC+TGG | - | 51760:11221-11240 | None:intergenic | 35.0% | |
| GTTTCTTTAGCCTGTTTGAT+TGG | + | 51760:7855-7874 | MS.gene23133:CDS | 35.0% | |
| TACCGGAATCAAAGTTCTAT+AGG | + | 51760:8400-8419 | MS.gene23133:CDS | 35.0% | |
| TAGATAAAGGTGGATGAGAA+TGG | + | 51760:8518-8537 | MS.gene23133:intron | 35.0% | |
| TATGGCAGAAGAATTTGTCA+AGG | + | 51760:11401-11420 | MS.gene23133:CDS | 35.0% | |
| TATGGTTAACACCAATACCA+TGG | + | 51760:10152-10171 | MS.gene23133:CDS | 35.0% | |
| TCATCAGTTTGTAGTGATGA+GGG | + | 51760:8575-8594 | MS.gene23133:CDS | 35.0% | |
| TCATCTTCAGAAAGTTCTAC+TGG | + | 51760:9559-9578 | MS.gene23133:CDS | 35.0% | |
| TCCAACAGATCAAAGAGATT+TGG | - | 51760:11450-11469 | None:intergenic | 35.0% | |
| TGTACAGACATCAGAAGTAA+GGG | + | 51760:10543-10562 | MS.gene23133:intron | 35.0% | |
| TTCATCAGTTTGTAGTGATG+AGG | + | 51760:8574-8593 | MS.gene23133:CDS | 35.0% | |
| TTCATCTTGTTCCATGGTAT+TGG | - | 51760:10166-10185 | None:intergenic | 35.0% | |
| TTCTGTCAGTGAAAGTTACT+TGG | + | 51760:10651-10670 | MS.gene23133:CDS | 35.0% | |
| TTGAAGAGTTGGCATTGTTT+GGG | - | 51760:9135-9154 | None:intergenic | 35.0% | |
| TTGTACAGACATCAGAAGTA+AGG | + | 51760:10542-10561 | MS.gene23133:intron | 35.0% | |
| TTGTCTCCAATCAAGAGTAA+TGG | + | 51760:8920-8939 | MS.gene23133:CDS | 35.0% | |
| TTGTTGGAAGTTGCAAATCA+TGG | + | 51760:11586-11605 | MS.gene23133:CDS | 35.0% | |
| TTTGAAGAGTTGGCATTGTT+TGG | - | 51760:9136-9155 | None:intergenic | 35.0% | |
| TTTGGATTCTTTGCCAACTT+CGG | + | 51760:8640-8659 | MS.gene23133:CDS | 35.0% | |
| TTTGGCAGATGAGTTATACA+GGG | + | 51760:11644-11663 | MS.gene23133:CDS | 35.0% | |
| ! | AAGAAAAAGTATGACAGCAG+AGG | + | 51760:9703-9722 | MS.gene23133:CDS | 35.0% |
| ! | ACATTGAAGCATTTGAAGAG+GGG | + | 51760:11760-11779 | MS.gene23133:CDS | 35.0% |
| ! | ATCAGTTTCTTCCTGTTTTC+AGG | + | 51760:11147-11166 | MS.gene23133:intron | 35.0% |
| ! | CAAAGGTACATCATCATTCA+AGG | + | 51760:9189-9208 | MS.gene23133:CDS | 35.0% |
| ! | GACATTGAAGCATTTGAAGA+GGG | + | 51760:11759-11778 | MS.gene23133:CDS | 35.0% |
| ! | TGACATTGAAGCATTTGAAG+AGG | + | 51760:11758-11777 | MS.gene23133:CDS | 35.0% |
| ! | TTTGAAATCTCTTGAGTGAC+TGG | - | 51760:8844-8863 | None:intergenic | 35.0% |
| ! | TTTTGGCAGATGAGTTATAC+AGG | + | 51760:11643-11662 | MS.gene23133:CDS | 35.0% |
| !! | ACGAGGAATAGAGTTTTATC+AGG | + | 51760:9019-9038 | MS.gene23133:CDS | 35.0% |
| !! | AGGAATAGAGTTTTATCAGG+CGG | + | 51760:9022-9041 | MS.gene23133:CDS | 35.0% |
| !! | TCTGCTTTGAACGTTGTTTT+TGG | - | 51760:9302-9321 | None:intergenic | 35.0% |
| !! | TTTTGACTATGTGTTGGACT+TGG | - | 51760:10376-10395 | None:intergenic | 35.0% |
| !!! | TTGTTTTTGGCTTGCATTGT+AGG | - | 51760:9289-9308 | None:intergenic | 35.0% |
| AAAACGTGTGCAAACCGTAA+TGG | + | 51760:9439-9458 | MS.gene23133:CDS | 40.0% | |
| AAAGCAGACAGCAAAAAGTG+GGG | - | 51760:8439-8458 | None:intergenic | 40.0% | |
| AAAGCTCTTCCATGTCTATG+GGG | + | 51760:11268-11287 | MS.gene23133:CDS | 40.0% | |
| AAATTAGAACTCCTCTCACC+AGG | - | 51760:9166-9185 | None:intergenic | 40.0% | |
| AACACACAGGTGCAACATAA+AGG | - | 51760:10852-10871 | None:intergenic | 40.0% | |
| AAGTTCTACTGGAGTCAGAA+AGG | + | 51760:9570-9589 | MS.gene23133:CDS | 40.0% | |
| AATCTCGTAAGAAGCTCGTT+TGG | + | 51760:7885-7904 | MS.gene23133:CDS | 40.0% | |
| ACATCAGGCACATCATATTG+TGG | + | 51760:11483-11502 | MS.gene23133:CDS | 40.0% | |
| ACTTGGCAACACAGAGTTTA+TGG | + | 51760:11383-11402 | MS.gene23133:CDS | 40.0% | |
| AGTCAGAAAGGCAACAAACA+AGG | + | 51760:9582-9601 | MS.gene23133:CDS | 40.0% | |
| AGTCCGAGTAATATAGGAAG+TGG | + | 51760:8545-8564 | MS.gene23133:CDS | 40.0% | |
| CAAAGCTCTTCCATGTCTAT+GGG | + | 51760:11267-11286 | MS.gene23133:CDS | 40.0% | |
| CATCAACTGCAGAAGTTTCA+AGG | + | 51760:8352-8371 | MS.gene23133:intron | 40.0% | |
| CATCAGTTTGTAGTGATGAG+GGG | + | 51760:8576-8595 | MS.gene23133:CDS | 40.0% | |
| CCATTCCAGTTACTCACAAT+AGG | + | 51760:8894-8913 | MS.gene23133:CDS | 40.0% | |
| CCTATTGTGAGTAACTGGAA+TGG | - | 51760:8897-8916 | None:intergenic | 40.0% | |
| CGTTCAAAGCAGAGATACAA+TGG | + | 51760:9309-9328 | MS.gene23133:CDS | 40.0% | |
| CTAGATCTCAAACCAGTAGA+AGG | - | 51760:10111-10130 | None:intergenic | 40.0% | |
| GAAGAATGCAGCTCATGTAA+TGG | + | 51760:8955-8974 | MS.gene23133:CDS | 40.0% | |
| GAAGATGAAACTCGTGTTGT+CGG | - | 51760:9547-9566 | None:intergenic | 40.0% | |
| GATGGGTGACATCAATTCAA+AGG | + | 51760:11613-11632 | MS.gene23133:CDS | 40.0% | |
| GCCAAATCTCTTTGATCTGT+TGG | + | 51760:11446-11465 | MS.gene23133:CDS | 40.0% | |
| GGAAAATCTAGAGACCTTAC+CGG | + | 51760:8383-8402 | MS.gene23133:CDS | 40.0% | |
| GGTGACATCAATTCAAAGGA+AGG | + | 51760:11617-11636 | MS.gene23133:CDS | 40.0% | |
| GTCAGAAAGGCAACAAACAA+GGG | + | 51760:9583-9602 | MS.gene23133:CDS | 40.0% | |
| TAACATGAATCAGCAACTGC+AGG | + | 51760:10251-10270 | MS.gene23133:CDS | 40.0% | |
| TAAGTCGGAGAAGTCTTCTT+GGG | + | 51760:8784-8803 | MS.gene23133:CDS | 40.0% | |
| TAGGGCAATCAATAACCGAA+AGG | + | 51760:9645-9664 | MS.gene23133:CDS | 40.0% | |
| TATTCCTCGTATATGGCTGA+GGG | - | 51760:9009-9028 | None:intergenic | 40.0% | |
| TCAAAGCTCTTCCATGTCTA+TGG | + | 51760:11266-11285 | MS.gene23133:CDS | 40.0% | |
| TCACTCTAAGCTTGAAAGGA+AGG | + | 51760:11512-11531 | MS.gene23133:CDS | 40.0% | |
| TCGCCACTTCCTATATTACT+CGG | - | 51760:8551-8570 | None:intergenic | 40.0% | |
| TGAAATGTTGCCTCCAAAGT+CGG | + | 51760:8865-8884 | MS.gene23133:CDS | 40.0% | |
| TGAATTGATGTCACCCATCT+AGG | - | 51760:11612-11631 | None:intergenic | 40.0% | |
| TGATGCATTGAGTGTCTTGT+TGG | + | 51760:10020-10039 | MS.gene23133:CDS | 40.0% | |
| TGGAACAATCAAACCTTACC+TGG | + | 51760:7905-7924 | MS.gene23133:CDS | 40.0% | |
| TGTAGCAGCAACAATGAAAG+TGG | + | 51760:10577-10596 | MS.gene23133:CDS | 40.0% | |
| TTAAGTCAAACCAGCTCACA+AGG | + | 51760:9380-9399 | MS.gene23133:CDS | 40.0% | |
| TTAAGTCGGAGAAGTCTTCT+TGG | + | 51760:8783-8802 | MS.gene23133:CDS | 40.0% | |
| TTGCAAATCATGGCCTAGAT+GGG | + | 51760:11596-11615 | MS.gene23133:CDS | 40.0% | |
| TTTATGTGCCCTTGATTCCA+TGG | - | 51760:8813-8832 | None:intergenic | 40.0% | |
| ! | ATTAGTCTAGCTACTAACCC+GGG | - | 51760:8617-8636 | None:intergenic | 40.0% |
| ! | CATTAGTCTAGCTACTAACC+CGG | - | 51760:8618-8637 | None:intergenic | 40.0% |
| ! | CCACCTATTTAGAACCTGTT+TGG | + | 51760:8023-8042 | MS.gene23133:intron | 40.0% |
| ! | CTCGGTTTGTATTTGGTTTC+TGG | - | 51760:9408-9427 | None:intergenic | 40.0% |
| ! | GGAATCAAGGGCACATAAAA+TGG | + | 51760:8814-8833 | MS.gene23133:CDS | 40.0% |
| ! | GGGTTAGTAGCTAGACTAAT+GGG | + | 51760:8617-8636 | MS.gene23133:CDS | 40.0% |
| ! | GTCAACACCAAATCTAGTTC+TGG | - | 51760:9932-9951 | None:intergenic | 40.0% |
| !! | AATGACATGAGCACTGGATA+TGG | + | 51760:11720-11739 | MS.gene23133:CDS | 40.0% |
| !! | AGATTTGGTGTTGACTCTCT+TGG | + | 51760:9937-9956 | MS.gene23133:CDS | 40.0% |
| !! | AGTAGCTAGACTAATGGGTT+TGG | + | 51760:8622-8641 | MS.gene23133:CDS | 40.0% |
| !! | ATGACATGAGCACTGGATAT+GGG | + | 51760:11721-11740 | MS.gene23133:CDS | 40.0% |
| !! | CCAAACAGGTTCTAAATAGG+TGG | - | 51760:8026-8045 | None:intergenic | 40.0% |
| !! | GATTTGGTGTTGACTCTCTT+GGG | + | 51760:9938-9957 | MS.gene23133:CDS | 40.0% |
| !! | GGAATAGAGTTTTATCAGGC+GGG | + | 51760:9023-9042 | MS.gene23133:CDS | 40.0% |
| !! | GGTATTGGTGTTAACCATAC+TGG | - | 51760:10151-10170 | None:intergenic | 40.0% |
| !! | GGTTCTAAATAGGTGGACAA+AGG | - | 51760:8019-8038 | None:intergenic | 40.0% |
| !! | TCGACTAGCTTTCTAGACAT+GGG | - | 51760:9112-9131 | None:intergenic | 40.0% |
| !! | TGCTGATTCATGTTAAGCAC+TGG | - | 51760:10246-10265 | None:intergenic | 40.0% |
| AAACCGTAATGGCAATGTGC+TGG | + | 51760:9450-9469 | MS.gene23133:CDS | 45.0% | |
| AACTGCAGAAGTTTCAAGGC+AGG | + | 51760:8356-8375 | MS.gene23133:intron | 45.0% | |
| AAGCAGACAGCAAAAAGTGG+GGG | - | 51760:8438-8457 | None:intergenic | 45.0% | |
| ACTGCAGAAGTTTCAAGGCA+GGG | + | 51760:8357-8376 | MS.gene23133:intron | 45.0% | |
| AGAAGTTTCAAGGCAGGGAA+AGG | + | 51760:8362-8381 | MS.gene23133:intron | 45.0% | |
| AGCCTAAAAGGTCAAGCTCT+AGG | + | 51760:9626-9645 | MS.gene23133:CDS | 45.0% | |
| ATGTGCCTGATGTACTCTGA+TGG | - | 51760:11476-11495 | None:intergenic | 45.0% | |
| CAAATTGTAAGCCTGGTGAG+AGG | + | 51760:9152-9171 | MS.gene23133:CDS | 45.0% | |
| CACATATTGCCCCATAGACA+TGG | - | 51760:11280-11299 | None:intergenic | 45.0% | |
| CATGTCTATGGGGCAATATG+TGG | + | 51760:11278-11297 | MS.gene23133:CDS | 45.0% | |
| CTATCGCTGTTGTTCAAGTG+AGG | + | 51760:10218-10237 | MS.gene23133:CDS | 45.0% | |
| CTATTCCTCGTATATGGCTG+AGG | - | 51760:9010-9029 | None:intergenic | 45.0% | |
| GAAGACTTCTCCGACTTAAG+TGG | - | 51760:8782-8801 | None:intergenic | 45.0% | |
| GAATGCAGCTCATGTAATGG+AGG | + | 51760:8958-8977 | MS.gene23133:CDS | 45.0% | |
| GACAGTGAAGACAGTGCATA+TGG | + | 51760:10673-10692 | MS.gene23133:CDS | 45.0% | |
| GAGAACCATCAGAGTACATC+AGG | + | 51760:11468-11487 | MS.gene23133:CDS | 45.0% | |
| GCCTAAAAGGTCAAGCTCTA+GGG | + | 51760:9627-9646 | MS.gene23133:CDS | 45.0% | |
| GCGGCTGCTAAGATAATTGA+TGG | + | 51760:8980-8999 | MS.gene23133:CDS | 45.0% | |
| GGAGCAAGTCCGAGTAATAT+AGG | + | 51760:8539-8558 | MS.gene23133:CDS | 45.0% | |
| GTACCAGCACATTGCCATTA+CGG | - | 51760:9456-9475 | None:intergenic | 45.0% | |
| GTGGCTGTCACACAAATATG+TGG | + | 51760:11297-11316 | MS.gene23133:CDS | 45.0% | |
| GTTGCAAATCATGGCCTAGA+TGG | + | 51760:11595-11614 | MS.gene23133:CDS | 45.0% | |
| TAGACTCAGTAAATGGCGTG+TGG | - | 51760:10444-10463 | None:intergenic | 45.0% | |
| TCAGTGTACCGTAATCTCAG+AGG | + | 51760:10083-10102 | MS.gene23133:CDS | 45.0% | |
| TTGGGATGCCATGGAATCAA+GGG | + | 51760:8802-8821 | MS.gene23133:CDS | 45.0% | |
| ! | GCAAGACAAAGCATCCAGTA+TGG | + | 51760:10134-10153 | MS.gene23133:CDS | 45.0% |
| ! | GGCAATGCTCGGTTTGTATT+TGG | - | 51760:9415-9434 | None:intergenic | 45.0% |
| ! | TCTGAGATTACGGTACACTG+AGG | - | 51760:10084-10103 | None:intergenic | 45.0% |
| ! | TCTGGTTTCCATCACTTGCT+CGG | - | 51760:9914-9933 | None:intergenic | 45.0% |
| ! | TTTGTAGTGATGAGGGGTGT+GGG | + | 51760:8582-8601 | MS.gene23133:CDS | 45.0% |
| !! | AACTCGTGTTGTCGGCTTAT+TGG | - | 51760:9539-9558 | None:intergenic | 45.0% |
| !! | AGAAGGCTCCTCTGAGATTA+CGG | - | 51760:10094-10113 | None:intergenic | 45.0% |
| !! | CGGGTTAGTAGCTAGACTAA+TGG | + | 51760:8616-8635 | MS.gene23133:CDS | 45.0% |
| !! | GTCGACTAGCTTTCTAGACA+TGG | - | 51760:9113-9132 | None:intergenic | 45.0% |
| !! | TGAGCACTGGATATGGGAAA+TGG | + | 51760:11727-11746 | MS.gene23133:CDS | 45.0% |
| !!! | TTTTATTTGATTTATTTTTT+TGG | + | 51760:8475-8494 | MS.gene23133:intron | 5.0% |
| AAGAGGGGTCAGAGGTTGAA+GGG | + | 51760:11775-11794 | MS.gene23133:CDS | 50.0% | |
| ACATGAGCTGCATTCTTCGG+CGG | - | 51760:8953-8972 | None:intergenic | 50.0% | |
| AGCAGACAGCAAAAAGTGGG+GGG | - | 51760:8437-8456 | None:intergenic | 50.0% | |
| AGCATTTGAAGAGGGGTCAG+AGG | + | 51760:11767-11786 | MS.gene23133:CDS | 50.0% | |
| ATCTCAGAGGAGCCTTCTAC+TGG | + | 51760:10096-10115 | MS.gene23133:CDS | 50.0% | |
| CAGGAAGAAACTGATCGGCA+CGG | - | 51760:11142-11161 | None:intergenic | 50.0% | |
| CATGGATGACTATCGTCGTG+CGG | + | 51760:8742-8761 | MS.gene23133:CDS | 50.0% | |
| CTTGGGATGCCATGGAATCA+AGG | + | 51760:8801-8820 | MS.gene23133:CDS | 50.0% | |
| GAAGTCTTCTTGGGATGCCA+TGG | + | 51760:8793-8812 | MS.gene23133:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | 51760:7945-7964 | None:intergenic | 50.0% | |
| GGAGCTGAATAGTGAAGCAC+CGG | - | 51760:8681-8700 | None:intergenic | 50.0% | |
| GGTTGTCAGCATTCTGATGC+TGG | + | 51760:10610-10629 | MS.gene23133:CDS | 50.0% | |
| GTCTGCAATGACATGAGCAC+TGG | + | 51760:11714-11733 | MS.gene23133:CDS | 50.0% | |
| GTTTGTAGTGATGAGGGGTG+TGG | + | 51760:8581-8600 | MS.gene23133:CDS | 50.0% | |
| TCGGGCACACTTCTCTTCAA+GGG | - | 51760:9877-9896 | None:intergenic | 50.0% | |
| TCTTTGCCAACTTCGGACGT+CGG | + | 51760:8647-8666 | MS.gene23133:CDS | 50.0% | |
| TGATCAGGACTTCTTGCCTC+AGG | - | 51760:9733-9752 | None:intergenic | 50.0% | |
| TGGATGGGGGAAACTCCTTT+CGG | - | 51760:9663-9682 | None:intergenic | 50.0% | |
| ! | ACGTTTTCTGCGGCAATGCT+CGG | - | 51760:9426-9445 | None:intergenic | 50.0% |
| ! | ATGGGTTTAGCCGACTTTGG+AGG | - | 51760:8878-8897 | None:intergenic | 50.0% |
| ! | CGGTTTGCACACGTTTTCTG+CGG | - | 51760:9436-9455 | None:intergenic | 50.0% |
| ! | GCCCTAGAGCTTGACCTTTT+AGG | - | 51760:9631-9650 | None:intergenic | 50.0% |
| ! | GGAATGGGTTTAGCCGACTT+TGG | - | 51760:8881-8900 | None:intergenic | 50.0% |
| ! | TGCAGCTCATGTAATGGAGG+CGG | + | 51760:8961-8980 | MS.gene23133:CDS | 50.0% |
| !! | AAACGGTGCTGCCTGAAAAC+AGG | - | 51760:11161-11180 | None:intergenic | 50.0% |
| AGAGGGGTCAGAGGTTGAAG+GGG | + | 51760:11776-11795 | MS.gene23133:CDS | 55.0% | |
| ATCCTCTGCCGAGCAAGTGA+TGG | + | 51760:9903-9922 | MS.gene23133:CDS | 55.0% | |
| CGCACGACGATAGTCATCCA+TGG | - | 51760:8744-8763 | None:intergenic | 55.0% | |
| CTCGGCAGAGGATAGTGACT+CGG | - | 51760:9896-9915 | None:intergenic | 55.0% | |
| CTCGGGCACACTTCTCTTCA+AGG | - | 51760:9878-9897 | None:intergenic | 55.0% | |
| GAAGAGGGGTCAGAGGTTGA+AGG | + | 51760:11774-11793 | MS.gene23133:CDS | 55.0% | |
| GAAGCCCTCAGCCATATACG+AGG | + | 51760:9002-9021 | MS.gene23133:CDS | 55.0% | |
| TCGGCAGAGGATAGTGACTC+GGG | - | 51760:9895-9914 | None:intergenic | 55.0% | |
| TTCCATCACTTGCTCGGCAG+AGG | - | 51760:9908-9927 | None:intergenic | 55.0% | |
| !! | GTTTCTGGCTCCTTGTGAGC+TGG | - | 51760:9393-9412 | None:intergenic | 55.0% |
| !! | TGACAGCAGAGGTGTTCCTG+AGG | + | 51760:9714-9733 | MS.gene23133:CDS | 55.0% |
| !! | TGAGGGTGCTCTTCGTTCCA+TGG | + | 51760:8724-8743 | MS.gene23133:CDS | 55.0% |
| AGCTCACCGACGTCCGAAGT+TGG | - | 51760:8656-8675 | None:intergenic | 60.0% | |
| GGGTGTGGGAGTAAAGCTCC+CGG | + | 51760:8596-8615 | MS.gene23133:CDS | 60.0% | |
| GGTGTGGGAGTAAAGCTCCC+GGG | + | 51760:8597-8616 | MS.gene23133:CDS | 60.0% | |
| TCGGACGTCGGTGAGCTCTC+CGG | + | 51760:8659-8678 | MS.gene23133:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51760 | gene | 7811 | 11851 | 7811 | ID=MS.gene23133 |
| 51760 | mRNA | 7811 | 11851 | 7811 | ID=MS.gene23133.t1;Parent=MS.gene23133 |
| 51760 | exon | 7811 | 7926 | 7811 | ID=MS.gene23133.t1.exon1;Parent=MS.gene23133.t1 |
| 51760 | CDS | 7811 | 7926 | 7811 | ID=cds.MS.gene23133.t1;Parent=MS.gene23133.t1 |
| 51760 | exon | 8364 | 8422 | 8364 | ID=MS.gene23133.t1.exon2;Parent=MS.gene23133.t1 |
| 51760 | CDS | 8364 | 8422 | 8364 | ID=cds.MS.gene23133.t1;Parent=MS.gene23133.t1 |
| 51760 | exon | 8521 | 10272 | 8521 | ID=MS.gene23133.t1.exon3;Parent=MS.gene23133.t1 |
| 51760 | CDS | 8521 | 10272 | 8521 | ID=cds.MS.gene23133.t1;Parent=MS.gene23133.t1 |
| 51760 | exon | 10550 | 10694 | 10550 | ID=MS.gene23133.t1.exon4;Parent=MS.gene23133.t1 |
| 51760 | CDS | 10550 | 10694 | 10550 | ID=cds.MS.gene23133.t1;Parent=MS.gene23133.t1 |
| 51760 | exon | 11169 | 11851 | 11169 | ID=MS.gene23133.t1.exon5;Parent=MS.gene23133.t1 |
| 51760 | CDS | 11169 | 11851 | 11169 | ID=cds.MS.gene23133.t1;Parent=MS.gene23133.t1 |
| Gene Sequence |
| Protein sequence |
