Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23259.t1 | XP_003606906.2 | 99.6 | 488 | 2 | 0 | 1 | 488 | 1 | 488 | 1.60E-289 | 1004.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23259.t1 | Q9T034 | 80.7 | 488 | 90 | 3 | 1 | 487 | 1 | 485 | 2.1e-237 | 822.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23259.t1 | G7JG63 | 99.6 | 488 | 2 | 0 | 1 | 488 | 73 | 560 | 1.1e-289 | 1004.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056708 | MS.gene23259 | 0.909421 | 5.80E-82 | -1.69E-46 |
MS.gene059545 | MS.gene23259 | 0.821515 | 3.88E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23259.t1 | MTR_4g070040 | 99.590 | 488 | 2 | 0 | 1 | 488 | 73 | 560 | 0.0 | 1018 |
MS.gene23259.t1 | MTR_7g038870 | 53.763 | 93 | 30 | 4 | 13 | 105 | 54 | 133 | 4.53e-18 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23259.t1 | AT4G39280 | 80.738 | 488 | 90 | 3 | 1 | 487 | 1 | 485 | 0.0 | 832 |
MS.gene23259.t1 | AT4G39280 | 80.738 | 488 | 90 | 3 | 1 | 487 | 1 | 485 | 0.0 | 832 |
MS.gene23259.t1 | AT3G58140 | 22.939 | 279 | 151 | 8 | 203 | 465 | 82 | 312 | 9.09e-12 | 67.4 |
Find 113 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTGAATTTCAACTAATTT+TGG | 0.096630 | 4.2:-36835059 | MS.gene23259:CDS |
GCCAAAATTAGTTGAAATTC+AGG | 0.195550 | 4.2:+36835058 | None:intergenic |
CCCATCGGCCGCAACATTTC+AGG | 0.247616 | 4.2:+36828353 | None:intergenic |
CACAGGCTGCTAAGAATAAA+TGG | 0.253144 | 4.2:-36834144 | MS.gene23259:CDS |
GAAGGGTTACTCGGTGAAAA+AGG | 0.272456 | 4.2:-36832758 | MS.gene23259:CDS |
CAGTCTTCATCCACTGTTAA+AGG | 0.296408 | 4.2:-36832507 | MS.gene23259:intron |
TAAGAATAAATGGGTGGAAA+TGG | 0.321478 | 4.2:-36834134 | MS.gene23259:CDS |
GGCAGTTTCTTTGTTGTTGA+AGG | 0.347853 | 4.2:+36829905 | None:intergenic |
ATCCCATACATTATCATTGT+TGG | 0.352476 | 4.2:+36828097 | None:intergenic |
GCAATAACTTGGACATCTTC+AGG | 0.352913 | 4.2:+36828326 | None:intergenic |
ACACAACTGCTGTTTCTTCC+CGG | 0.353252 | 4.2:-36829653 | MS.gene23259:CDS |
GGAAACACTTATGCTACTTT+GGG | 0.368488 | 4.2:-36835085 | MS.gene23259:CDS |
AGGAAACACTTATGCTACTT+TGG | 0.372317 | 4.2:-36835086 | MS.gene23259:CDS |
TGACTCTATCTTCCACATCT+TGG | 0.374666 | 4.2:+36833880 | None:intergenic |
AATGTCATCAAGAGTCTTCA+TGG | 0.375800 | 4.2:-36835266 | MS.gene23259:CDS |
ATGGCAGAAGAAGCAGTTCT+TGG | 0.380478 | 4.2:-36835368 | MS.gene23259:CDS |
TACGGTCCACTGCTTCATTT+CGG | 0.381127 | 4.2:+36829271 | None:intergenic |
CTCACTCTCTGTGACTTAAT+AGG | 0.389562 | 4.2:-36828758 | MS.gene23259:CDS |
AGGCCAACAATGATAATGTA+TGG | 0.396670 | 4.2:-36828100 | MS.gene23259:CDS |
AAGAATAAATGGGTGGAAAT+GGG | 0.403506 | 4.2:-36834133 | MS.gene23259:CDS |
TCTGCTTCTTCAAATACAAC+AGG | 0.409658 | 4.2:-36833853 | MS.gene23259:CDS |
GTGAAGCAAATTCATGAATC+TGG | 0.409753 | 4.2:-36829863 | MS.gene23259:CDS |
AACGATGAGATTAAAGATTC+AGG | 0.411017 | 4.2:-36835332 | MS.gene23259:CDS |
CATGGGGACTTTCTCTTGAA+AGG | 0.415287 | 4.2:-36828304 | MS.gene23259:intron |
TATCTCCAGAGATGAACTTC+AGG | 0.416797 | 4.2:-36835020 | MS.gene23259:intron |
TTCATCTCTGGAGATACCTT+CGG | 0.418177 | 4.2:+36835027 | None:intergenic |
GCTGAGTTCCATCAGATAGA+AGG | 0.424934 | 4.2:-36829240 | MS.gene23259:intron |
TACTTTGTTGCAGTGGGGAG+TGG | 0.425940 | 4.2:-36832589 | MS.gene23259:intron |
ATCACGAGCAGGATGTTGTT+GGG | 0.429335 | 4.2:+36830032 | None:intergenic |
GTGCCAGCTGGTAAAGCATC+CGG | 0.436309 | 4.2:+36829634 | None:intergenic |
ACCTGAAATGTTGCGGCCGA+TGG | 0.441480 | 4.2:-36828354 | MS.gene23259:CDS |
GCTTTCAACATAATTATTTG+TGG | 0.443741 | 4.2:+36831699 | None:intergenic |
TTCCCGGATGCTTTACCAGC+TGG | 0.449839 | 4.2:-36829637 | MS.gene23259:CDS |
CATGATTTCTTCTCACGCTT+AGG | 0.453055 | 4.2:-36828728 | MS.gene23259:intron |
CTTTCAACATAATTATTTGT+GGG | 0.453083 | 4.2:+36831700 | None:intergenic |
AACTACCTGAAGTTCATCTC+TGG | 0.454281 | 4.2:+36835015 | None:intergenic |
CCAAAATTAGTTGAAATTCA+GGG | 0.454614 | 4.2:+36835059 | None:intergenic |
TCCATGCTAGGTTCTGTGTA+TGG | 0.455200 | 4.2:+36828532 | None:intergenic |
CGTGGATATAGGATATTAAG+AGG | 0.457838 | 4.2:-36835132 | MS.gene23259:intron |
TGGGAAAGCAACTCATATCT+AGG | 0.457897 | 4.2:-36834114 | MS.gene23259:CDS |
TATCTAATGCTGCAGGTTTG+AGG | 0.459179 | 4.2:-36831728 | MS.gene23259:intron |
GCTAAAGGTCAGCCTCTTGA+AGG | 0.483989 | 4.2:-36832533 | MS.gene23259:CDS |
AAAGTCCCCATGCAATAACT+TGG | 0.488007 | 4.2:+36828315 | None:intergenic |
ACCCGCTGAACATAATCTTC+AGG | 0.489399 | 4.2:+36829884 | None:intergenic |
TCTGTGTATGGATTGTAAGC+AGG | 0.492584 | 4.2:+36828544 | None:intergenic |
GAGTACAACTACACTGCTAA+AGG | 0.503823 | 4.2:-36832548 | MS.gene23259:CDS |
CTCACGTACCTTCTATCTGA+TGG | 0.507401 | 4.2:+36829232 | None:intergenic |
TATCTTCTTGCCTTTAACAG+TGG | 0.508276 | 4.2:+36832497 | None:intergenic |
TCATCTCTGGAGATACCTTC+GGG | 0.514328 | 4.2:+36835028 | None:intergenic |
TGGGTAGAAGTAGGAAACTC+TGG | 0.514681 | 4.2:-36828386 | MS.gene23259:CDS |
CCTGAAATGTTGCGGCCGAT+GGG | 0.514857 | 4.2:-36828353 | MS.gene23259:CDS |
ATCTGGTGGATATGAGTCTA+GGG | 0.518465 | 4.2:-36829846 | MS.gene23259:CDS |
TTGGTAGATATGCATATGAC+TGG | 0.519858 | 4.2:-36829713 | MS.gene23259:intron |
GAGCAGGATGTTGTTGGGGC+TGG | 0.519969 | 4.2:+36830037 | None:intergenic |
GCCTGAAGATTATGTTCAGC+GGG | 0.522388 | 4.2:-36829885 | MS.gene23259:CDS |
AATCTGGTGGATATGAGTCT+AGG | 0.523310 | 4.2:-36829847 | MS.gene23259:CDS |
ACATGGGTGTTAACTGATGA+AGG | 0.528044 | 4.2:-36835106 | MS.gene23259:CDS |
CAAATAATTATGTTGAAAGC+AGG | 0.529786 | 4.2:-36831696 | MS.gene23259:intron |
TTTATAATCTAGGACATGGA+AGG | 0.529872 | 4.2:-36832776 | MS.gene23259:intron |
AGCAGGTTTGAATTTCAGCT+TGG | 0.531031 | 4.2:+36828561 | None:intergenic |
ATATTGCAAATGCAGGGCAT+TGG | 0.535921 | 4.2:-36832949 | MS.gene23259:intron |
CAGTTGTGTGGGTCCGCAGA+AGG | 0.541428 | 4.2:+36829667 | None:intergenic |
AATCACGAGCAGGATGTTGT+TGG | 0.550429 | 4.2:+36830031 | None:intergenic |
TTATAATCTAGGACATGGAA+GGG | 0.551939 | 4.2:-36832775 | MS.gene23259:intron |
AAGATGTCCAAGTTATTGCA+TGG | 0.554823 | 4.2:-36828322 | MS.gene23259:CDS |
GATGCTTTACCAGCTGGCAC+AGG | 0.556280 | 4.2:-36829631 | MS.gene23259:intron |
TCTTCAAATACAACAGGGAC+AGG | 0.557365 | 4.2:-36833847 | MS.gene23259:intron |
AGGATATTAAGAGGGAGACA+TGG | 0.561811 | 4.2:-36835123 | MS.gene23259:CDS |
ACAGGCTGCTAAGAATAAAT+GGG | 0.564845 | 4.2:-36834143 | MS.gene23259:CDS |
CAAAATTAGTTGAAATTCAG+GGG | 0.565317 | 4.2:+36835060 | None:intergenic |
CTTCAAGATAGCTTGTGCAC+AGG | 0.567618 | 4.2:-36834161 | MS.gene23259:CDS |
ATGTTGTTGGGGCTGGAACA+AGG | 0.568157 | 4.2:+36830044 | None:intergenic |
TGCCAGCTGGTAAAGCATCC+GGG | 0.570368 | 4.2:+36829635 | None:intergenic |
GGCCAACAATGATAATGTAT+GGG | 0.574828 | 4.2:-36828099 | MS.gene23259:CDS |
CTGGTTGAAGGTCCAAGATG+TGG | 0.575608 | 4.2:-36833892 | MS.gene23259:intron |
CAGAGATCTCTTCGGCCACA+AGG | 0.576224 | 4.2:-36828065 | MS.gene23259:intron |
GATAACATCAGAGATCTCTT+CGG | 0.577235 | 4.2:-36828073 | MS.gene23259:CDS |
TGAGTCCTCGATCACATACA+AGG | 0.577373 | 4.2:+36828777 | None:intergenic |
ACATACAAACCTGTGCCAGC+TGG | 0.581794 | 4.2:+36829622 | None:intergenic |
AAGCAAATTCATGAATCTGG+TGG | 0.584637 | 4.2:-36829860 | MS.gene23259:CDS |
GGGAAGAAACAGCAGTTGTG+TGG | 0.585320 | 4.2:+36829655 | None:intergenic |
AGATGTCCAAGTTATTGCAT+GGG | 0.585697 | 4.2:-36828321 | MS.gene23259:CDS |
GGATATTAAGAGGGAGACAT+GGG | 0.586886 | 4.2:-36835122 | MS.gene23259:CDS |
TCCATACACAGAACCTAGCA+TGG | 0.588226 | 4.2:-36828533 | MS.gene23259:CDS |
TAGGACATGGAAGGGTTACT+CGG | 0.591543 | 4.2:-36832767 | MS.gene23259:CDS |
AAAGCAACTCATATCTAGGA+AGG | 0.600368 | 4.2:-36834110 | MS.gene23259:intron |
GGAACTCAGCAAGATGTGTA+CGG | 0.600616 | 4.2:+36829253 | None:intergenic |
CAAGCTATCTTGAAGACTGA+AGG | 0.601060 | 4.2:+36834169 | None:intergenic |
TGAAGACTGCCACCTTCAAG+AGG | 0.603906 | 4.2:+36832521 | None:intergenic |
TCGTATAACAGTTATCATGA+AGG | 0.610125 | 4.2:-36828419 | MS.gene23259:intron |
CACCTGAAAATCTCCATGCT+AGG | 0.612290 | 4.2:+36828520 | None:intergenic |
TAACTCGAGATAACTTTCAG+AGG | 0.616702 | 4.2:-36832693 | MS.gene23259:intron |
TCAGGCCTTGTATGTGATCG+AGG | 0.620832 | 4.2:-36828782 | MS.gene23259:intron |
TGTTCAGACCTGAAATGTTG+CGG | 0.621149 | 4.2:-36828361 | MS.gene23259:CDS |
GGAAGAAACAGCAGTTGTGT+GGG | 0.622693 | 4.2:+36829656 | None:intergenic |
GTGTCATGTGAATCACGAGC+AGG | 0.626400 | 4.2:+36830021 | None:intergenic |
GGTGAATTTGCAGCTGAACG+TGG | 0.628430 | 4.2:-36835311 | MS.gene23259:CDS |
AAAGGTCAGCCTCTTGAAGG+TGG | 0.635059 | 4.2:-36832530 | MS.gene23259:CDS |
TGCATATGACTGGAAAAGAG+AGG | 0.636420 | 4.2:-36829703 | MS.gene23259:CDS |
GGCTGCTAAGAATAAATGGG+TGG | 0.644736 | 4.2:-36834140 | MS.gene23259:CDS |
ACATCTTCAGGAAGTCCCAT+CGG | 0.645307 | 4.2:+36828338 | None:intergenic |
TCACGAGCAGGATGTTGTTG+GGG | 0.645590 | 4.2:+36830033 | None:intergenic |
CTGCTTCTTCAAATACAACA+GGG | 0.647717 | 4.2:-36833852 | MS.gene23259:CDS |
GATGTCCAAGTTATTGCATG+GGG | 0.652254 | 4.2:-36828320 | MS.gene23259:CDS |
TGCCTGAAGATTATGTTCAG+CGG | 0.652900 | 4.2:-36829886 | MS.gene23259:CDS |
GTGGATATAGGATATTAAGA+GGG | 0.659435 | 4.2:-36835131 | MS.gene23259:intron |
CTGGTGGATATGAGTCTAGG+GGG | 0.660548 | 4.2:-36829844 | MS.gene23259:intron |
TTTCAGATACGTCGATGCTG+TGG | 0.662586 | 4.2:-36835243 | MS.gene23259:intron |
ATAAGACTCACCCCATACAG+TGG | 0.664162 | 4.2:+36831827 | None:intergenic |
TGACATTGACGATTTCGTTG+TGG | 0.667924 | 4.2:+36835282 | None:intergenic |
TGTATTCCGAAATGAAGCAG+TGG | 0.678250 | 4.2:-36829277 | MS.gene23259:CDS |
TCTGGTGGATATGAGTCTAG+GGG | 0.691706 | 4.2:-36829845 | MS.gene23259:CDS |
TCTCTGGAGATACCTTCGGG+CGG | 0.738824 | 4.2:+36835031 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 36827848 | 36835390 | 36827848 | ID=MS.gene23259 |
chr4.2 | mRNA | 36827848 | 36835390 | 36827848 | ID=MS.gene23259.t1;Parent=MS.gene23259 |
chr4.2 | exon | 36835244 | 36835390 | 36835244 | ID=MS.gene23259.t1.exon1;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36835244 | 36835390 | 36835244 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36835021 | 36835143 | 36835021 | ID=MS.gene23259.t1.exon2;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36835021 | 36835143 | 36835021 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36834111 | 36834203 | 36834111 | ID=MS.gene23259.t1.exon3;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36834111 | 36834203 | 36834111 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36833848 | 36833904 | 36833848 | ID=MS.gene23259.t1.exon4;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36833848 | 36833904 | 36833848 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36832901 | 36832956 | 36832901 | ID=MS.gene23259.t1.exon5;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36832901 | 36832956 | 36832901 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36832694 | 36832786 | 36832694 | ID=MS.gene23259.t1.exon6;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36832694 | 36832786 | 36832694 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36832508 | 36832598 | 36832508 | ID=MS.gene23259.t1.exon7;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36832508 | 36832598 | 36832508 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36831838 | 36831875 | 36831838 | ID=MS.gene23259.t1.exon8;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36831838 | 36831875 | 36831838 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36831697 | 36831735 | 36831697 | ID=MS.gene23259.t1.exon9;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36831697 | 36831735 | 36831697 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36830007 | 36830083 | 36830007 | ID=MS.gene23259.t1.exon10;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36830007 | 36830083 | 36830007 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36829845 | 36829929 | 36829845 | ID=MS.gene23259.t1.exon11;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36829845 | 36829929 | 36829845 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36829632 | 36829728 | 36829632 | ID=MS.gene23259.t1.exon12;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36829632 | 36829728 | 36829632 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36829241 | 36829337 | 36829241 | ID=MS.gene23259.t1.exon13;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36829241 | 36829337 | 36829241 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36828729 | 36828800 | 36828729 | ID=MS.gene23259.t1.exon14;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36828729 | 36828800 | 36828729 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36828523 | 36828589 | 36828523 | ID=MS.gene23259.t1.exon15;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36828523 | 36828589 | 36828523 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36828305 | 36828430 | 36828305 | ID=MS.gene23259.t1.exon16;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36828305 | 36828430 | 36828305 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36828066 | 36828120 | 36828066 | ID=MS.gene23259.t1.exon17;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36828066 | 36828120 | 36828066 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
chr4.2 | exon | 36827848 | 36827901 | 36827848 | ID=MS.gene23259.t1.exon18;Parent=MS.gene23259.t1 |
chr4.2 | CDS | 36827848 | 36827901 | 36827848 | ID=cds.MS.gene23259.t1;Parent=MS.gene23259.t1 |
Gene Sequence |
Protein sequence |