Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23564.t1 | XP_024627777.1 | 94.7 | 628 | 33 | 0 | 1 | 628 | 1 | 628 | 0.00E+00 | 1203.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23564.t1 | A0A2Z6NM90 | 68.9 | 614 | 175 | 6 | 1 | 614 | 1 | 598 | 1.4e-234 | 822.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene23564 | 0.841524 | 4.51E-58 | -1.69E-46 |
| MS.gene051850 | MS.gene23564 | 0.806691 | 7.28E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene23564 | 0.802382 | 5.76E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23564.t1 | MTR_0010s0370 | 30.822 | 146 | 98 | 3 | 322 | 466 | 34 | 177 | 1.31e-18 | 84.7 |
| MS.gene23564.t1 | MTR_0010s0370 | 28.767 | 146 | 101 | 3 | 35 | 179 | 34 | 177 | 6.22e-17 | 79.7 |
| MS.gene23564.t1 | MTR_0010s0350 | 30.822 | 146 | 98 | 3 | 322 | 466 | 34 | 177 | 1.31e-18 | 84.7 |
| MS.gene23564.t1 | MTR_0010s0350 | 28.767 | 146 | 101 | 3 | 35 | 179 | 34 | 177 | 6.22e-17 | 79.7 |
| MS.gene23564.t1 | MTR_6g033215 | 28.788 | 132 | 91 | 3 | 70 | 199 | 163 | 293 | 2.01e-13 | 71.6 |
| MS.gene23564.t1 | MTR_6g033215 | 23.858 | 197 | 146 | 4 | 292 | 486 | 99 | 293 | 3.31e-13 | 71.2 |
| MS.gene23564.t1 | MTR_6g045237 | 25.292 | 257 | 186 | 4 | 252 | 503 | 9 | 264 | 1.38e-12 | 70.9 |
| MS.gene23564.t1 | MTR_6g045237 | 27.059 | 170 | 114 | 3 | 52 | 216 | 100 | 264 | 7.25e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23564.t1 | AT5G36228 | 29.353 | 201 | 124 | 8 | 319 | 511 | 36 | 226 | 1.65e-16 | 82.0 |
| MS.gene23564.t1 | AT5G36228 | 31.818 | 176 | 105 | 6 | 55 | 223 | 58 | 225 | 2.35e-14 | 75.5 |
| MS.gene23564.t1 | AT2G01050 | 26.042 | 192 | 127 | 5 | 59 | 249 | 103 | 280 | 6.78e-15 | 78.2 |
| MS.gene23564.t1 | AT3G42140 | 27.857 | 140 | 68 | 4 | 364 | 503 | 64 | 170 | 3.03e-11 | 65.1 |
Find 131 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATCACACTCAATTATT+TGG | 0.181645 | 8.4:+61241827 | None:intergenic |
| TACTGCTTGTGCAGGGAAAA+AGG | 0.221738 | 8.4:+61242493 | None:intergenic |
| ATATGCATAAAGTGTCATTT+TGG | 0.233698 | 8.4:-61242971 | MS.gene23564:CDS |
| TCTTCAACTTCCATGAATAT+TGG | 0.238807 | 8.4:+61242295 | None:intergenic |
| TCTTCAACCTCCATGAATAT+TGG | 0.255999 | 8.4:+61243156 | None:intergenic |
| CCGCTACCGAAAATTACTTA+TGG | 0.262387 | 8.4:-61241730 | MS.gene23564:CDS |
| AAAAGATTGGAGATGTTATT+GGG | 0.269872 | 8.4:-61242899 | MS.gene23564:CDS |
| GAATCCGAACGCAATTTAAA+TGG | 0.279209 | 8.4:+61242930 | None:intergenic |
| TGGGGAGGTTTCTTCGGATT+AGG | 0.296335 | 8.4:-61241978 | MS.gene23564:CDS |
| TCTTTGTTGAAAACCTAAAA+AGG | 0.297388 | 8.4:+61242235 | None:intergenic |
| CACATTTGGGCCGTGGTTGC+GGG | 0.303595 | 8.4:-61242583 | MS.gene23564:CDS |
| TCAAAGCAAGAGTTACAAAA+AGG | 0.310092 | 8.4:-61243293 | MS.gene23564:CDS |
| GAGGAAAAGGAATACTCATT+TGG | 0.324430 | 8.4:-61241772 | MS.gene23564:CDS |
| GGGGAGGTTTCTTCGGATTA+GGG | 0.327338 | 8.4:-61241977 | MS.gene23564:CDS |
| TTGTGAGGAGGTTGAGGAAA+AGG | 0.336117 | 8.4:-61241785 | MS.gene23564:CDS |
| GAGGAAAAGGAATACACATT+TGG | 0.343001 | 8.4:-61242597 | MS.gene23564:CDS |
| ACAGAATGGGGAGGTTTATT+CGG | 0.349411 | 8.4:-61242845 | MS.gene23564:CDS |
| TCTAGGTCTTCAACTTCAAC+TGG | 0.357979 | 8.4:+61242270 | None:intergenic |
| TCTAGGTCTTCAACTTCAAC+TGG | 0.357979 | 8.4:+61243131 | None:intergenic |
| TTAAATCACACTTATTCATT+TGG | 0.360245 | 8.4:+61242688 | None:intergenic |
| TATCCTTTCCACTTCTTTGT+CGG | 0.365594 | 8.4:+61241528 | None:intergenic |
| CGCTACCGAAAATTACTTAT+GGG | 0.368978 | 8.4:-61241729 | MS.gene23564:CDS |
| ACACATTTGGGCCGTGGTTG+CGG | 0.377430 | 8.4:-61242584 | MS.gene23564:CDS |
| AGAGAGTTGTGAGGAGGTTG+AGG | 0.379621 | 8.4:-61241791 | MS.gene23564:CDS |
| GGTTCTGTTTGTCCAGAGTT+TGG | 0.386986 | 8.4:+61243211 | None:intergenic |
| AAACTTGAAGGTTCCTCTCT+TGG | 0.390061 | 8.4:+61241905 | None:intergenic |
| CATATTTAAAGAAAACTTGA+AGG | 0.401015 | 8.4:+61241893 | None:intergenic |
| CAACAAGATGTTTACAGAAT+GGG | 0.407468 | 8.4:-61242858 | MS.gene23564:CDS |
| ACTATCCTTCTTCTCATCAT+AGG | 0.416864 | 8.4:+61242539 | None:intergenic |
| AGGAAAAGGAATACTCATTT+GGG | 0.424201 | 8.4:-61241771 | MS.gene23564:CDS |
| AACTTTGCTACTGCTTGTGC+AGG | 0.426636 | 8.4:+61242485 | None:intergenic |
| GTACCCTAGCTGGCAAGCTC+TGG | 0.427975 | 8.4:-61242362 | MS.gene23564:CDS |
| ACAGAATGGGGAGGTTTCTT+CGG | 0.428006 | 8.4:-61241984 | MS.gene23564:CDS |
| ACTGATAAGAGACGAAGAAA+TGG | 0.429569 | 8.4:-61241626 | MS.gene23564:CDS |
| TTGTCCAGAGTTTGGCGGCT+AGG | 0.431520 | 8.4:+61243219 | None:intergenic |
| TGGTCCAGAGCTTGCCAGCT+AGG | 0.432510 | 8.4:+61242358 | None:intergenic |
| AGGAAAAGGAATACACATTT+GGG | 0.433225 | 8.4:-61242596 | MS.gene23564:CDS |
| AAGAATCAGAACCGAGAAAA+GGG | 0.433295 | 8.4:-61242461 | MS.gene23564:CDS |
| GGAAAGGATAGTTGAGTCCT+TGG | 0.438448 | 8.4:-61241515 | MS.gene23564:CDS |
| CTCATTTGGGCCATGGCTAA+AGG | 0.438771 | 8.4:-61241758 | MS.gene23564:CDS |
| TGAGGAAGTAGTTGAGGAAA+AGG | 0.443843 | 8.4:-61242610 | MS.gene23564:CDS |
| AAAAGGGGACGATGTGGAAA+TGG | 0.451764 | 8.4:-61242445 | MS.gene23564:CDS |
| GGACCGTGGTTTGTTATCAT+AGG | 0.455351 | 8.4:-61242782 | MS.gene23564:CDS |
| TGTCCAGAGTTTGGCGGCTA+GGG | 0.455969 | 8.4:+61243220 | None:intergenic |
| CACAGTCATGTTTATTGAGA+GGG | 0.458823 | 8.4:+61241483 | None:intergenic |
| CAGCGCGACGTTTACAGAAT+GGG | 0.462040 | 8.4:-61241997 | MS.gene23564:CDS |
| GAATCCGAACGCAATTTCAA+TGG | 0.466213 | 8.4:+61242069 | None:intergenic |
| GAAGAATCAGAACCGAGAAA+AGG | 0.468777 | 8.4:-61242462 | MS.gene23564:CDS |
| AAACTACAATCCAATATTCA+TGG | 0.470928 | 8.4:-61242305 | MS.gene23564:CDS |
| GTACCCTAGCCGCCAAACTC+TGG | 0.478530 | 8.4:-61243223 | MS.gene23564:CDS |
| GTTGCCATTTAAATTGCGTT+CGG | 0.480942 | 8.4:-61242934 | MS.gene23564:CDS |
| CAAAGAGCAGCCTGTAGAGT+TGG | 0.482753 | 8.4:-61242997 | MS.gene23564:CDS |
| ACTGCCATTGAAATTGCGTT+CGG | 0.485007 | 8.4:-61242073 | MS.gene23564:CDS |
| TGCATATTATCCAACTCTAC+AGG | 0.485104 | 8.4:+61242987 | None:intergenic |
| TTGAGCATATCCAACTCTGC+AGG | 0.486470 | 8.4:+61242126 | None:intergenic |
| TTATTCCGTCGTACCCTAGC+TGG | 0.487770 | 8.4:-61242372 | MS.gene23564:CDS |
| TGCTTTAAATGTGGAAGGAT+AGG | 0.488073 | 8.4:-61241853 | MS.gene23564:CDS |
| CGAAGAACAGCCTGCAGAGT+TGG | 0.488396 | 8.4:-61242136 | MS.gene23564:CDS |
| ATCATTCTTCAGAAAATCAC+AGG | 0.488578 | 8.4:-61243020 | MS.gene23564:CDS |
| GGTCCAGAGCTTGCCAGCTA+GGG | 0.489800 | 8.4:+61242359 | None:intergenic |
| CTTCAGATTCTTCAATAATG+AGG | 0.491916 | 8.4:+61243270 | None:intergenic |
| CCACATTTAAAGCAAAATGT+AGG | 0.495130 | 8.4:+61241862 | None:intergenic |
| TGTTTCAAATGTGGGAGGAT+AGG | 0.495538 | 8.4:-61242714 | MS.gene23564:CDS |
| AAACTACAATCCAATATTCA+TGG | 0.496622 | 8.4:-61243166 | MS.gene23564:CDS |
| CTTTCTTCAGAGTCCAGCCA+AGG | 0.498341 | 8.4:+61241565 | None:intergenic |
| TCAACAAGATGTTTACAGAA+TGG | 0.505537 | 8.4:-61242859 | MS.gene23564:CDS |
| TATTCGGATTAAAGTATCGT+TGG | 0.508780 | 8.4:-61242829 | MS.gene23564:CDS |
| TAGTAGCGAAGTTGAAGAAA+CGG | 0.512793 | 8.4:-61241650 | MS.gene23564:CDS |
| GTTGATAATGTGTTGAAGAA+TGG | 0.513861 | 8.4:-61242207 | MS.gene23564:CDS |
| AACTTCGCTACTACTTGTGC+AGG | 0.514498 | 8.4:+61241660 | None:intergenic |
| TTGGTAGTTGCCCGCAACCA+CGG | 0.516297 | 8.4:+61242573 | None:intergenic |
| ATCATTCTTCAGAAAATCAC+GGG | 0.525971 | 8.4:-61242159 | MS.gene23564:CDS |
| TTTAAATGTAGATGAAGAAA+CGG | 0.527050 | 8.4:-61242670 | MS.gene23564:CDS |
| TCAGCGCGACGTTTACAGAA+TGG | 0.527377 | 8.4:-61241998 | MS.gene23564:CDS |
| AAGAGACGAAGAAATGGAAG+TGG | 0.528971 | 8.4:-61241620 | MS.gene23564:CDS |
| AATTACCTATGATGAGAAGA+AGG | 0.529368 | 8.4:-61242544 | MS.gene23564:CDS |
| TTGGATTGTAGTTTGCATGA+AGG | 0.530735 | 8.4:+61242314 | None:intergenic |
| TGAGAGGGTTAATGTTTCCA+AGG | 0.531387 | 8.4:+61241498 | None:intergenic |
| AATTGGAGTACATGAAGAAA+CGG | 0.533321 | 8.4:-61242022 | MS.gene23564:CDS |
| TGAAGAAACGGAGGGTTGTG+AGG | 0.533324 | 8.4:-61242658 | MS.gene23564:CDS |
| CTCTCAATAAACATGACTGT+GGG | 0.534488 | 8.4:-61241481 | MS.gene23564:CDS |
| ACTACTTGTGCAGGCAAAGA+GGG | 0.537421 | 8.4:+61241669 | None:intergenic |
| AGGAATACACATTTGGGCCG+TGG | 0.537778 | 8.4:-61242590 | MS.gene23564:CDS |
| AGCGGAGATGCCTTTAGCCA+TGG | 0.537982 | 8.4:+61241748 | None:intergenic |
| CCACAGTCATGTTTATTGAG+AGG | 0.539678 | 8.4:+61241482 | None:intergenic |
| TATCATTCTTCAGAAAATCA+CGG | 0.544645 | 8.4:-61242160 | MS.gene23564:CDS |
| TCTGTTTGTCCAGAGTTTGG+CGG | 0.550636 | 8.4:+61243214 | None:intergenic |
| CAGAACAAAGGTGAGGCTAA+AGG | 0.551841 | 8.4:-61241595 | MS.gene23564:CDS |
| GCAGAGAATGTGTTGAAGAA+TGG | 0.552994 | 8.4:-61243068 | MS.gene23564:CDS |
| AATTACTTATGGGCAGAAGA+AGG | 0.554732 | 8.4:-61241719 | MS.gene23564:CDS |
| TAAAGGCAGAGAACCTTGGC+TGG | 0.558351 | 8.4:-61241578 | MS.gene23564:CDS |
| GGACTCTGAAGAAAGAGAGA+AGG | 0.560837 | 8.4:-61241557 | MS.gene23564:CDS |
| AGGAATACTCATTTGGGCCA+TGG | 0.569564 | 8.4:-61241765 | MS.gene23564:CDS |
| CCACATTTGAAACAAAATGC+AGG | 0.579290 | 8.4:+61242723 | None:intergenic |
| AGGCTAAAGGCAGAGAACCT+TGG | 0.580692 | 8.4:-61241582 | MS.gene23564:CDS |
| GTGGGGAAGGACAAAGACCT+TGG | 0.581218 | 8.4:-61241463 | MS.gene23564:CDS |
| AATAAACATGACTGTGGGGA+AGG | 0.582576 | 8.4:-61241476 | MS.gene23564:CDS |
| TAGGAAGATGGAGCAGTGGA+AGG | 0.588412 | 8.4:-61243327 | None:intergenic |
| AAAGATTGGAGATGTTATTG+GGG | 0.590097 | 8.4:-61242898 | MS.gene23564:CDS |
| AACAAGATGTTTACAGAATG+GGG | 0.590854 | 8.4:-61242857 | MS.gene23564:CDS |
| CTCTGAAGAAAGAGAGAAGG+AGG | 0.591851 | 8.4:-61241554 | MS.gene23564:CDS |
| GGAGGTAACCGACAAAGAAG+TGG | 0.595426 | 8.4:-61241536 | MS.gene23564:CDS |
| AAATGTAGATGAAGAAACGG+AGG | 0.596636 | 8.4:-61242667 | MS.gene23564:CDS |
| TAACCGACAAAGAAGTGGAA+AGG | 0.598501 | 8.4:-61241531 | MS.gene23564:CDS |
| TTGAATAGGCCGTTGATGAG+AGG | 0.600230 | 8.4:-61241943 | MS.gene23564:CDS |
| ACCGAGAAAAGGGGACGATG+TGG | 0.606656 | 8.4:-61242451 | MS.gene23564:CDS |
| ACTTTGCTACTGCTTGTGCA+GGG | 0.607554 | 8.4:+61242486 | None:intergenic |
| AATGTAGATGAAGAAACGGA+GGG | 0.608994 | 8.4:-61242666 | MS.gene23564:CDS |
| AGGTTGTGAGGAAGTAGTTG+AGG | 0.615181 | 8.4:-61242616 | MS.gene23564:CDS |
| TACTACTTGTGCAGGCAAAG+AGG | 0.616429 | 8.4:+61241668 | None:intergenic |
| GCCGTTGATGAGAGGGACCG+TGG | 0.622509 | 8.4:-61242796 | MS.gene23564:CDS |
| AGCGCGACGTTTACAGAATG+GGG | 0.630401 | 8.4:-61241996 | MS.gene23564:CDS |
| CCTCTCAATAAACATGACTG+TGG | 0.631069 | 8.4:-61241482 | MS.gene23564:CDS |
| GTTTGGCGGCTAGGGTACGA+TGG | 0.637712 | 8.4:+61243228 | None:intergenic |
| ACCACGGTCCCTCTCATCAA+CGG | 0.638150 | 8.4:+61242795 | None:intergenic |
| CGACTAGGAAGATGGAGCAG+TGG | 0.639736 | 8.4:-61243331 | None:intergenic |
| ATCACAGTACCTCTCATCAA+CGG | 0.640551 | 8.4:+61241934 | None:intergenic |
| GCGACGTTTACAGAATGGGG+AGG | 0.647022 | 8.4:-61241993 | MS.gene23564:CDS |
| AGAATCAGAACCGAGAAAAG+GGG | 0.655629 | 8.4:-61242460 | MS.gene23564:CDS |
| GTGGAAATGGAACAAAACAA+AGG | 0.658215 | 8.4:-61242432 | MS.gene23564:CDS |
| CTGTGATTCGATACCAAGAG+AGG | 0.663101 | 8.4:-61241918 | MS.gene23564:CDS |
| ATGTGTTGAAGAATGGACCA+TGG | 0.663778 | 8.4:-61243061 | MS.gene23564:CDS |
| GCTTGCCAGCTAGGGTACGA+CGG | 0.671336 | 8.4:+61242367 | None:intergenic |
| ATGGAAGTGGAACAGAACAA+AGG | 0.682083 | 8.4:-61241607 | MS.gene23564:CDS |
| CTTCTGCTTCATCAACAATG+AGG | 0.691358 | 8.4:+61242409 | None:intergenic |
| AAGATGTTTACAGAATGGGG+AGG | 0.692009 | 8.4:-61242854 | MS.gene23564:CDS |
| CTTCCTATGATAACAAACCA+CGG | 0.700585 | 8.4:+61242779 | None:intergenic |
| TCTCAATAAACATGACTGTG+GGG | 0.719284 | 8.4:-61241480 | MS.gene23564:CDS |
| AGTGGAACAGAACAAAGGTG+AGG | 0.720736 | 8.4:-61241602 | MS.gene23564:CDS |
| CTACAATCCAATATTCATGG+AGG | 0.721303 | 8.4:-61243163 | MS.gene23564:CDS |
| ATGTGTTGAAGAATGGACCG+TGG | 0.731032 | 8.4:-61242200 | MS.gene23564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATCTTTATCTCTTT+AGG | - | chr8.4:61241667-61241686 | MS.gene23564:CDS | 20.0% |
| !! | CATATTTAAAGAAAACTTGA+AGG | + | chr8.4:61242886-61242905 | None:intergenic | 20.0% |
| !! | TTAAATCACACTTATTCATT+TGG | + | chr8.4:61242091-61242110 | None:intergenic | 20.0% |
| !! | TTTAAATGTAGATGAAGAAA+CGG | - | chr8.4:61242106-61242125 | MS.gene23564:CDS | 20.0% |
| ! | AAAAAGATTGGAGACTTAAT+TGG | - | chr8.4:61242737-61242756 | MS.gene23564:CDS | 25.0% |
| ! | AAAAAGATTGGAGATGTTAT+TGG | - | chr8.4:61241876-61241895 | MS.gene23564:CDS | 25.0% |
| ! | AAAAGATTGGAGATGTTATT+GGG | - | chr8.4:61241877-61241896 | MS.gene23564:CDS | 25.0% |
| ! | AAACTACAATCCAATATTCA+TGG | - | chr8.4:61241610-61241629 | MS.gene23564:CDS | 25.0% |
| ! | TATCATTCTTCAGAAAATCA+CGG | - | chr8.4:61241755-61241774 | MS.gene23564:CDS | 25.0% |
| ! | TCTTTGTTGAAAACCTAAAA+AGG | + | chr8.4:61242544-61242563 | None:intergenic | 25.0% |
| ! | TTTCATCACACTCAATTATT+TGG | + | chr8.4:61242952-61242971 | None:intergenic | 25.0% |
| !! | AGAGATAAAGATTTTTGTCT+AGG | + | chr8.4:61241665-61241684 | None:intergenic | 25.0% |
| !! | TTCTCATCATAGGTAATTTT+CGG | + | chr8.4:61242230-61242249 | None:intergenic | 25.0% |
| !!! | ATATGCATAAAGTGTCATTT+TGG | - | chr8.4:61241805-61241824 | MS.gene23564:CDS | 25.0% |
| !!! | GAAGTATTTTTTTTGACTCA+AGG | - | chr8.4:61242140-61242159 | MS.gene23564:CDS | 25.0% |
| !!! | TATGCATAAAGTGTCATTTT+GGG | - | chr8.4:61241806-61241825 | MS.gene23564:CDS | 25.0% |
| !!! | TTTTACATTATAGGTGTTGT+TGG | + | chr8.4:61242441-61242460 | None:intergenic | 25.0% |
| AAAGATTGGAGATGTTATTG+GGG | - | chr8.4:61241878-61241897 | MS.gene23564:CDS | 30.0% | |
| AACAAGATGTTTACAGAATG+GGG | - | chr8.4:61241919-61241938 | MS.gene23564:CDS | 30.0% | |
| AATTACCTATGATGAGAAGA+AGG | - | chr8.4:61242232-61242251 | MS.gene23564:CDS | 30.0% | |
| AATTGGAGTACATGAAGAAA+CGG | - | chr8.4:61242754-61242773 | MS.gene23564:CDS | 30.0% | |
| AGGAAAAGGAATACACATTT+GGG | - | chr8.4:61242180-61242199 | MS.gene23564:CDS | 30.0% | |
| AGGAAAAGGAATACTCATTT+GGG | - | chr8.4:61243005-61243024 | MS.gene23564:CDS | 30.0% | |
| ATCATTCTTCAGAAAATCAC+AGG | - | chr8.4:61241756-61241775 | MS.gene23564:CDS | 30.0% | |
| ATCATTCTTCAGAAAATCAC+GGG | - | chr8.4:61241756-61241775 | MS.gene23564:CDS | 30.0% | |
| CAACAAGATGTTTACAGAAT+GGG | - | chr8.4:61241918-61241937 | MS.gene23564:CDS | 30.0% | |
| CTTCAGATTCTTCAATAATG+AGG | + | chr8.4:61241509-61241528 | None:intergenic | 30.0% | |
| GATTCAATTGCGAAAAAGAT+TGG | - | chr8.4:61242725-61242744 | MS.gene23564:CDS | 30.0% | |
| TCAAAGCAAGAGTTACAAAA+AGG | - | chr8.4:61241483-61241502 | MS.gene23564:CDS | 30.0% | |
| TCAACAAGATGTTTACAGAA+TGG | - | chr8.4:61241917-61241936 | MS.gene23564:CDS | 30.0% | |
| TCTTCAACTTCCATGAATAT+TGG | + | chr8.4:61242484-61242503 | None:intergenic | 30.0% | |
| TTGAAAACCTAAAAAGGTAG+AGG | + | chr8.4:61242538-61242557 | None:intergenic | 30.0% | |
| ! | ACAAAAACCTCTACCTTTTT+AGG | - | chr8.4:61242528-61242547 | MS.gene23564:CDS | 30.0% |
| ! | ACATTATTTTCGAAACTCCA+TGG | + | chr8.4:61241735-61241754 | None:intergenic | 30.0% |
| ! | ATCATAGGTAATTTTCGGTT+TGG | + | chr8.4:61242225-61242244 | None:intergenic | 30.0% |
| ! | CATGAAGGCTTTTACATTAT+AGG | + | chr8.4:61242450-61242469 | None:intergenic | 30.0% |
| ! | CCACATTTAAAGCAAAATGT+AGG | + | chr8.4:61242917-61242936 | None:intergenic | 30.0% |
| ! | TTCTGCCCATAAGTAATTTT+CGG | + | chr8.4:61243055-61243074 | None:intergenic | 30.0% |
| !! | CATTTTGCTTTAAATGTGGA+AGG | - | chr8.4:61242918-61242937 | MS.gene23564:CDS | 30.0% |
| !! | CCTACATTTTGCTTTAAATG+TGG | - | chr8.4:61242914-61242933 | MS.gene23564:CDS | 30.0% |
| !! | CTGCATTTTGTTTCAAATGT+GGG | - | chr8.4:61242054-61242073 | MS.gene23564:CDS | 30.0% |
| !! | GTTGATAATGTGTTGAAGAA+TGG | - | chr8.4:61242569-61242588 | MS.gene23564:CDS | 30.0% |
| !! | TATTCGGATTAAAGTATCGT+TGG | - | chr8.4:61241947-61241966 | MS.gene23564:CDS | 30.0% |
| !!! | ACTTTATTTTTGAAGCTCCA+CGG | + | chr8.4:61242596-61242615 | None:intergenic | 30.0% |
| !!! | ATAAAGTGTCATTTTGGGTT+AGG | - | chr8.4:61241811-61241830 | MS.gene23564:CDS | 30.0% |
| AAATGTAGATGAAGAAACGG+AGG | - | chr8.4:61242109-61242128 | MS.gene23564:CDS | 35.0% | |
| AAGAATCAGAACCGAGAAAA+GGG | - | chr8.4:61242315-61242334 | MS.gene23564:CDS | 35.0% | |
| AATGTAGATGAAGAAACGGA+GGG | - | chr8.4:61242110-61242129 | MS.gene23564:CDS | 35.0% | |
| AATTACTTATGGGCAGAAGA+AGG | - | chr8.4:61243057-61243076 | MS.gene23564:CDS | 35.0% | |
| ACTATCCTTCTTCTCATCAT+AGG | + | chr8.4:61242240-61242259 | None:intergenic | 35.0% | |
| ACTGATAAGAGACGAAGAAA+TGG | - | chr8.4:61243150-61243169 | MS.gene23564:CDS | 35.0% | |
| AGAAGAAAAAGAGAGTTGTG+AGG | - | chr8.4:61242976-61242995 | MS.gene23564:CDS | 35.0% | |
| CACAGTCATGTTTATTGAGA+GGG | + | chr8.4:61243296-61243315 | None:intergenic | 35.0% | |
| CGCTACCGAAAATTACTTAT+GGG | - | chr8.4:61243047-61243066 | MS.gene23564:CDS | 35.0% | |
| CTACAATCCAATATTCATGG+AGG | - | chr8.4:61241613-61241632 | MS.gene23564:CDS | 35.0% | |
| CTCTCAATAAACATGACTGT+GGG | - | chr8.4:61243295-61243314 | MS.gene23564:CDS | 35.0% | |
| CTTCCTATGATAACAAACCA+CGG | + | chr8.4:61242000-61242019 | None:intergenic | 35.0% | |
| GAATCCGAACGCAATTTAAA+TGG | + | chr8.4:61241849-61241868 | None:intergenic | 35.0% | |
| GAGGAAAAGGAATACACATT+TGG | - | chr8.4:61242179-61242198 | MS.gene23564:CDS | 35.0% | |
| GAGGAAAAGGAATACTCATT+TGG | - | chr8.4:61243004-61243023 | MS.gene23564:CDS | 35.0% | |
| GTGGAAATGGAACAAAACAA+AGG | - | chr8.4:61242344-61242363 | MS.gene23564:CDS | 35.0% | |
| TAGTAGCGAAGTTGAAGAAA+CGG | - | chr8.4:61243126-61243145 | MS.gene23564:CDS | 35.0% | |
| TATCCTTTCCACTTCTTTGT+CGG | + | chr8.4:61243251-61243270 | None:intergenic | 35.0% | |
| TCTCAATAAACATGACTGTG+GGG | - | chr8.4:61243296-61243315 | MS.gene23564:CDS | 35.0% | |
| TCTTCAACCTCCATGAATAT+TGG | + | chr8.4:61241623-61241642 | None:intergenic | 35.0% | |
| TGCATATTATCCAACTCTAC+AGG | + | chr8.4:61241792-61241811 | None:intergenic | 35.0% | |
| ! | AAAGGTAGAGGTTTTTGTCT+AGG | + | chr8.4:61242526-61242545 | None:intergenic | 35.0% |
| ! | CCACATTTGAAACAAAATGC+AGG | + | chr8.4:61242056-61242075 | None:intergenic | 35.0% |
| ! | CCATAAGTAATTTTCGGTAG+CGG | + | chr8.4:61243049-61243068 | None:intergenic | 35.0% |
| ! | CTTGAACGCTTTTGCATTAT+AGG | + | chr8.4:61241589-61241608 | None:intergenic | 35.0% |
| ! | GCTCAAAAAAGTCTCGTTTT+GGG | - | chr8.4:61242667-61242686 | MS.gene23564:CDS | 35.0% |
| ! | GGGTTTTACTGGATTTGAAT+AGG | - | chr8.4:61242819-61242838 | MS.gene23564:CDS | 35.0% |
| ! | GTTGCCATTTAAATTGCGTT+CGG | - | chr8.4:61241842-61241861 | MS.gene23564:CDS | 35.0% |
| ! | TGCTCAAAAAAGTCTCGTTT+TGG | - | chr8.4:61242666-61242685 | MS.gene23564:CDS | 35.0% |
| ! | TGCTTTAAATGTGGAAGGAT+AGG | - | chr8.4:61242923-61242942 | MS.gene23564:CDS | 35.0% |
| ! | TTGGATTGTAGTTTGCATGA+AGG | + | chr8.4:61242465-61242484 | None:intergenic | 35.0% |
| !! | AAAAAGTCTCGTTTTGGGTA+AGG | - | chr8.4:61242672-61242691 | MS.gene23564:CDS | 35.0% |
| !! | CATTTTGTTTCAAATGTGGG+AGG | - | chr8.4:61242057-61242076 | MS.gene23564:CDS | 35.0% |
| !! | CCTGCATTTTGTTTCAAATG+TGG | - | chr8.4:61242053-61242072 | MS.gene23564:CDS | 35.0% |
| !!! | TTTTTTGACTCAAGGTTGTG+AGG | - | chr8.4:61242148-61242167 | MS.gene23564:CDS | 35.0% |
| AAACTTGAAGGTTCCTCTCT+TGG | + | chr8.4:61242874-61242893 | None:intergenic | 40.0% | |
| AAGAGACGAAGAAATGGAAG+TGG | - | chr8.4:61243156-61243175 | MS.gene23564:CDS | 40.0% | |
| AAGATGTTTACAGAATGGGG+AGG | - | chr8.4:61241922-61241941 | MS.gene23564:CDS | 40.0% | |
| AATAAACATGACTGTGGGGA+AGG | - | chr8.4:61243300-61243319 | MS.gene23564:CDS | 40.0% | |
| ACAGAATGGGGAGGTTTATT+CGG | - | chr8.4:61241931-61241950 | MS.gene23564:CDS | 40.0% | |
| ACTGCCATTGAAATTGCGTT+CGG | - | chr8.4:61242703-61242722 | MS.gene23564:CDS | 40.0% | |
| AGAAAAAGAGAGTTGTGAGG+AGG | - | chr8.4:61242979-61242998 | MS.gene23564:CDS | 40.0% | |
| AGAATCAGAACCGAGAAAAG+GGG | - | chr8.4:61242316-61242335 | MS.gene23564:CDS | 40.0% | |
| ATCACAGTACCTCTCATCAA+CGG | + | chr8.4:61242845-61242864 | None:intergenic | 40.0% | |
| ATGGAAGTGGAACAGAACAA+AGG | - | chr8.4:61243169-61243188 | MS.gene23564:CDS | 40.0% | |
| ATGTGTTGAAGAATGGACCA+TGG | - | chr8.4:61241715-61241734 | MS.gene23564:CDS | 40.0% | |
| CCACAGTCATGTTTATTGAG+AGG | + | chr8.4:61243297-61243316 | None:intergenic | 40.0% | |
| CCGCTACCGAAAATTACTTA+TGG | - | chr8.4:61243046-61243065 | MS.gene23564:CDS | 40.0% | |
| CCTCTCAATAAACATGACTG+TGG | - | chr8.4:61243294-61243313 | MS.gene23564:CDS | 40.0% | |
| CTTCTGCTTCATCAACAATG+AGG | + | chr8.4:61242370-61242389 | None:intergenic | 40.0% | |
| GAAGAATCAGAACCGAGAAA+AGG | - | chr8.4:61242314-61242333 | MS.gene23564:CDS | 40.0% | |
| GAATCCGAACGCAATTTCAA+TGG | + | chr8.4:61242710-61242729 | None:intergenic | 40.0% | |
| GATTCGATCGCGAAAAAGAT+TGG | - | chr8.4:61241864-61241883 | MS.gene23564:CDS | 40.0% | |
| GCAGAGAATGTGTTGAAGAA+TGG | - | chr8.4:61241708-61241727 | MS.gene23564:CDS | 40.0% | |
| TAACCGACAAAGAAGTGGAA+AGG | - | chr8.4:61243245-61243264 | MS.gene23564:CDS | 40.0% | |
| TCTAGGTCTTCAACTTCAAC+TGG | + | chr8.4:61241648-61241667 | None:intergenic | 40.0% | |
| TGAGAGGGTTAATGTTTCCA+AGG | + | chr8.4:61243281-61243300 | None:intergenic | 40.0% | |
| TGAGGAAGTAGTTGAGGAAA+AGG | - | chr8.4:61242166-61242185 | MS.gene23564:CDS | 40.0% | |
| TGTTTCAAATGTGGGAGGAT+AGG | - | chr8.4:61242062-61242081 | MS.gene23564:CDS | 40.0% | |
| ! | TGAAAAAGCCGTTGATGAGA+GGG | - | chr8.4:61241973-61241992 | MS.gene23564:CDS | 40.0% |
| ! | TTGAAAAAGCCGTTGATGAG+AGG | - | chr8.4:61241972-61241991 | MS.gene23564:CDS | 40.0% |
| !! | TCTTCGGATTAGGGTTTTAC+TGG | - | chr8.4:61242808-61242827 | MS.gene23564:CDS | 40.0% |
| AAAAGGGGACGATGTGGAAA+TGG | - | chr8.4:61242331-61242350 | MS.gene23564:CDS | 45.0% | |
| AACTTCGCTACTACTTGTGC+AGG | + | chr8.4:61243119-61243138 | None:intergenic | 45.0% | |
| AACTTTGCTACTGCTTGTGC+AGG | + | chr8.4:61242294-61242313 | None:intergenic | 45.0% | |
| ACAGAATGGGGAGGTTTCTT+CGG | - | chr8.4:61242792-61242811 | MS.gene23564:CDS | 45.0% | |
| ACTACTTGTGCAGGCAAAGA+GGG | + | chr8.4:61243110-61243129 | None:intergenic | 45.0% | |
| ACTGCTTGTGCAGGGAAAAA+GGG | + | chr8.4:61242285-61242304 | None:intergenic | 45.0% | |
| ACTTTGCTACTGCTTGTGCA+GGG | + | chr8.4:61242293-61242312 | None:intergenic | 45.0% | |
| AGGAATACTCATTTGGGCCA+TGG | - | chr8.4:61243011-61243030 | MS.gene23564:CDS | 45.0% | |
| AGGTTGTGAGGAAGTAGTTG+AGG | - | chr8.4:61242160-61242179 | MS.gene23564:CDS | 45.0% | |
| AGTGGAACAGAACAAAGGTG+AGG | - | chr8.4:61243174-61243193 | MS.gene23564:CDS | 45.0% | |
| ATGTGTTGAAGAATGGACCG+TGG | - | chr8.4:61242576-61242595 | MS.gene23564:CDS | 45.0% | |
| CAGAACAAAGGTGAGGCTAA+AGG | - | chr8.4:61243181-61243200 | MS.gene23564:CDS | 45.0% | |
| CTGTGATTCGATACCAAGAG+AGG | - | chr8.4:61242858-61242877 | MS.gene23564:CDS | 45.0% | |
| GGAAAGGATAGTTGAGTCCT+TGG | - | chr8.4:61243261-61243280 | MS.gene23564:CDS | 45.0% | |
| GGTTCTGTTTGTCCAGAGTT+TGG | + | chr8.4:61241568-61241587 | None:intergenic | 45.0% | |
| TACTACTTGTGCAGGCAAAG+AGG | + | chr8.4:61243111-61243130 | None:intergenic | 45.0% | |
| TACTGCTTGTGCAGGGAAAA+AGG | + | chr8.4:61242286-61242305 | None:intergenic | 45.0% | |
| TCTGTTTGTCCAGAGTTTGG+CGG | + | chr8.4:61241565-61241584 | None:intergenic | 45.0% | |
| TTGAGCATATCCAACTCTGC+AGG | + | chr8.4:61242653-61242672 | None:intergenic | 45.0% | |
| TTGTGAGGAGGTTGAGGAAA+AGG | - | chr8.4:61242991-61243010 | MS.gene23564:CDS | 45.0% | |
| ! | CTCTGAAGAAAGAGAGAAGG+AGG | - | chr8.4:61243222-61243241 | MS.gene23564:CDS | 45.0% |
| ! | GGACTCTGAAGAAAGAGAGA+AGG | - | chr8.4:61243219-61243238 | MS.gene23564:CDS | 45.0% |
| ! | TTGAATAGGCCGTTGATGAG+AGG | - | chr8.4:61242833-61242852 | MS.gene23564:CDS | 45.0% |
| !! | GGACCGTGGTTTGTTATCAT+AGG | - | chr8.4:61241994-61242013 | MS.gene23564:CDS | 45.0% |
| AGAGAGTTGTGAGGAGGTTG+AGG | - | chr8.4:61242985-61243004 | MS.gene23564:CDS | 50.0% | |
| AGCGCGACGTTTACAGAATG+GGG | - | chr8.4:61242780-61242799 | MS.gene23564:CDS | 50.0% | |
| AGGAATACACATTTGGGCCG+TGG | - | chr8.4:61242186-61242205 | MS.gene23564:CDS | 50.0% | |
| AGGCTAAAGGCAGAGAACCT+TGG | - | chr8.4:61243194-61243213 | MS.gene23564:CDS | 50.0% | |
| CAAAGAGCAGCCTGTAGAGT+TGG | - | chr8.4:61241779-61241798 | MS.gene23564:CDS | 50.0% | |
| CAGCGCGACGTTTACAGAAT+GGG | - | chr8.4:61242779-61242798 | MS.gene23564:CDS | 50.0% | |
| CTCATTTGGGCCATGGCTAA+AGG | - | chr8.4:61243018-61243037 | MS.gene23564:CDS | 50.0% | |
| CTTTCTTCAGAGTCCAGCCA+AGG | + | chr8.4:61243214-61243233 | None:intergenic | 50.0% | |
| GGAGGTAACCGACAAAGAAG+TGG | - | chr8.4:61243240-61243259 | MS.gene23564:CDS | 50.0% | |
| GGGGAGGTTTCTTCGGATTA+GGG | - | chr8.4:61242799-61242818 | MS.gene23564:CDS | 50.0% | |
| TAAAGGCAGAGAACCTTGGC+TGG | - | chr8.4:61243198-61243217 | MS.gene23564:CDS | 50.0% | |
| TCAGCGCGACGTTTACAGAA+TGG | - | chr8.4:61242778-61242797 | MS.gene23564:CDS | 50.0% | |
| TGAAGAAACGGAGGGTTGTG+AGG | - | chr8.4:61242118-61242137 | MS.gene23564:CDS | 50.0% | |
| TGGGGAGGTTTCTTCGGATT+AGG | - | chr8.4:61242798-61242817 | MS.gene23564:CDS | 50.0% | |
| TTATTCCGTCGTACCCTAGC+TGG | - | chr8.4:61242404-61242423 | MS.gene23564:CDS | 50.0% | |
| ! | TCCACATCGTCCCCTTTTCT+CGG | + | chr8.4:61242329-61242348 | None:intergenic | 50.0% |
| ACACATTTGGGCCGTGGTTG+CGG | - | chr8.4:61242192-61242211 | MS.gene23564:CDS | 55.0% | |
| ACCACGGTCCCTCTCATCAA+CGG | + | chr8.4:61241984-61242003 | None:intergenic | 55.0% | |
| ACCGAGAAAAGGGGACGATG+TGG | - | chr8.4:61242325-61242344 | MS.gene23564:CDS | 55.0% | |
| AGCGGAGATGCCTTTAGCCA+TGG | + | chr8.4:61243031-61243050 | None:intergenic | 55.0% | |
| CGAAGAACAGCCTGCAGAGT+TGG | - | chr8.4:61242640-61242659 | MS.gene23564:CDS | 55.0% | |
| GCGACGTTTACAGAATGGGG+AGG | - | chr8.4:61242783-61242802 | MS.gene23564:CDS | 55.0% | |
| GTGGGGAAGGACAAAGACCT+TGG | - | chr8.4:61243313-61243332 | MS.gene23564:CDS | 55.0% | |
| TGTCCAGAGTTTGGCGGCTA+GGG | + | chr8.4:61241559-61241578 | None:intergenic | 55.0% | |
| TTGTCCAGAGTTTGGCGGCT+AGG | + | chr8.4:61241560-61241579 | None:intergenic | 55.0% | |
| ! | TTGGTAGTTGCCCGCAACCA+CGG | + | chr8.4:61242206-61242225 | None:intergenic | 55.0% |
| CACATTTGGGCCGTGGTTGC+GGG | - | chr8.4:61242193-61242212 | MS.gene23564:CDS | 60.0% | |
| GCTTGCCAGCTAGGGTACGA+CGG | + | chr8.4:61242412-61242431 | None:intergenic | 60.0% | |
| GGTCCAGAGCTTGCCAGCTA+GGG | + | chr8.4:61242420-61242439 | None:intergenic | 60.0% | |
| GTACCCTAGCCGCCAAACTC+TGG | - | chr8.4:61241553-61241572 | MS.gene23564:CDS | 60.0% | |
| GTACCCTAGCTGGCAAGCTC+TGG | - | chr8.4:61242414-61242433 | MS.gene23564:CDS | 60.0% | |
| GTTTGGCGGCTAGGGTACGA+TGG | + | chr8.4:61241551-61241570 | None:intergenic | 60.0% | |
| TGGTCCAGAGCTTGCCAGCT+AGG | + | chr8.4:61242421-61242440 | None:intergenic | 60.0% | |
| ! | GCCGTTGATGAGAGGGACCG+TGG | - | chr8.4:61241980-61241999 | MS.gene23564:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 61241456 | 61243342 | 61241456 | ID=MS.gene23564 |
| chr8.4 | mRNA | 61241456 | 61243342 | 61241456 | ID=MS.gene23564.t1;Parent=MS.gene23564 |
| chr8.4 | exon | 61241456 | 61243342 | 61241456 | ID=MS.gene23564.t1.exon1;Parent=MS.gene23564.t1 |
| chr8.4 | CDS | 61241456 | 61243342 | 61241456 | ID=cds.MS.gene23564.t1;Parent=MS.gene23564.t1 |
| Gene Sequence |
| Protein sequence |
