Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23966.t1 | KEH42495.1 | 99.5 | 216 | 1 | 0 | 1 | 216 | 462 | 677 | 1.70E-81 | 312.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23966.t1 | Q0WTY4 | 75.9 | 220 | 43 | 1 | 5 | 214 | 1 | 220 | 1.7e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23966.t1 | A0A072VWM9 | 99.5 | 216 | 1 | 0 | 1 | 216 | 462 | 677 | 1.2e-81 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055555 | MS.gene23966 | 0.800958 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23966.t1 | MTR_1g069715 | 99.537 | 216 | 1 | 0 | 1 | 216 | 462 | 677 | 6.06e-151 | 435 |
| MS.gene23966.t1 | MTR_7g097170 | 81.132 | 212 | 40 | 0 | 5 | 216 | 1 | 212 | 1.87e-113 | 323 |
| MS.gene23966.t1 | MTR_2g047875 | 73.832 | 214 | 52 | 1 | 5 | 214 | 1 | 214 | 2.30e-109 | 313 |
| MS.gene23966.t1 | MTR_2g041190 | 42.202 | 218 | 116 | 2 | 7 | 214 | 4 | 221 | 2.11e-41 | 140 |
| MS.gene23966.t1 | MTR_8g019700 | 46.023 | 176 | 95 | 0 | 7 | 182 | 4 | 179 | 4.39e-40 | 137 |
| MS.gene23966.t1 | MTR_4g057565 | 31.892 | 185 | 126 | 0 | 1 | 185 | 1 | 185 | 2.58e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23966.t1 | AT1G03950 | 78.571 | 210 | 45 | 0 | 5 | 214 | 1 | 210 | 1.41e-121 | 343 |
| MS.gene23966.t1 | AT5G44560 | 75.000 | 220 | 45 | 1 | 5 | 214 | 1 | 220 | 1.25e-115 | 329 |
| MS.gene23966.t1 | AT5G44560 | 76.000 | 200 | 38 | 1 | 25 | 214 | 1 | 200 | 3.77e-105 | 301 |
| MS.gene23966.t1 | AT5G44560 | 80.899 | 178 | 34 | 0 | 5 | 182 | 1 | 178 | 4.50e-103 | 296 |
| MS.gene23966.t1 | AT5G44560 | 76.000 | 150 | 36 | 0 | 5 | 154 | 1 | 150 | 7.21e-79 | 233 |
| MS.gene23966.t1 | AT2G06530 | 42.727 | 220 | 115 | 2 | 6 | 214 | 4 | 223 | 4.08e-43 | 145 |
| MS.gene23966.t1 | AT2G06530 | 42.424 | 198 | 103 | 2 | 28 | 214 | 5 | 202 | 2.70e-35 | 124 |
| MS.gene23966.t1 | AT5G22950 | 28.384 | 229 | 150 | 2 | 1 | 215 | 1 | 229 | 3.73e-19 | 82.8 |
Find 38 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1.3:-49235573 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1.3:-49235592 | None:intergenic |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1.3:-49237627 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1.3:+49235014 | MS.gene23966:CDS |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1.3:-49234815 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1.3:+49234801 | MS.gene23966:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1.3:+49237074 | MS.gene23966:CDS |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1.3:+49234778 | MS.gene23966:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1.3:+49237634 | MS.gene23966:CDS |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1.3:+49234064 | MS.gene23966:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1.3:+49235592 | MS.gene23966:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1.3:+49234993 | MS.gene23966:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1.3:-49234087 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1.3:+49234982 | MS.gene23966:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1.3:+49237054 | MS.gene23966:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | 1.3:+49233890 | MS.gene23966:CDS |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1.3:+49235768 | MS.gene23966:CDS |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1.3:+49234772 | MS.gene23966:CDS |
| GATAAAGAAAACTGCTAAGA+CGG | 0.504385 | 1.3:+49234369 | MS.gene23966:CDS |
| GCTCAGTCTTCTATTTCTGC+CGG | 0.508543 | 1.3:+49234973 | MS.gene23966:CDS |
| GAAAATTACATTACCTCTAG+TGG | 0.527579 | 1.3:-49234093 | None:intergenic |
| AACTGCTAAGACGGGAAATG+AGG | 0.530892 | 1.3:+49234378 | MS.gene23966:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1.3:+49237203 | MS.gene23966:intron |
| ATAAAGAAAACTGCTAAGAC+GGG | 0.538319 | 1.3:+49234370 | MS.gene23966:CDS |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1.3:+49235723 | MS.gene23966:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1.3:+49234767 | MS.gene23966:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1.3:+49237637 | MS.gene23966:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1.3:+49237240 | MS.gene23966:CDS |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1.3:+49234760 | MS.gene23966:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1.3:+49234999 | MS.gene23966:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1.3:-49234992 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1.3:-49234778 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1.3:+49234822 | MS.gene23966:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1.3:-49235728 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1.3:+49234080 | MS.gene23966:CDS |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1.3:+49235735 | MS.gene23966:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1.3:+49234842 | MS.gene23966:CDS |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1.3:+49237059 | MS.gene23966:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATTAATACAGTAA+GGG | - | chr1.3:49234194-49234213 | None:intergenic | 10.0% |
| !! | TATAATTAATTAATACAGTA+AGG | - | chr1.3:49234195-49234214 | None:intergenic | 10.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | + | chr1.3:49237014-49237033 | MS.gene23966:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | - | chr1.3:49236013-49236032 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | + | chr1.3:49235225-49235244 | MS.gene23966:intron | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | + | chr1.3:49236878-49236897 | MS.gene23966:intron | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | - | chr1.3:49236633-49236652 | None:intergenic | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | + | chr1.3:49237034-49237053 | MS.gene23966:intron | 15.0% |
| !! | ACATGAGAAATTTAAACAAT+AGG | - | chr1.3:49234316-49234335 | None:intergenic | 20.0% |
| !! | ATTAATTATATGTATTCCAC+AGG | + | chr1.3:49234205-49234224 | MS.gene23966:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | + | chr1.3:49236111-49236130 | MS.gene23966:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | - | chr1.3:49236806-49236825 | None:intergenic | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | + | chr1.3:49235375-49235394 | MS.gene23966:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | + | chr1.3:49235905-49235924 | MS.gene23966:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | + | chr1.3:49236649-49236668 | MS.gene23966:intron | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | + | chr1.3:49237038-49237057 | MS.gene23966:intron | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | - | chr1.3:49236849-49236868 | None:intergenic | 20.0% |
| !!! | AGTTGGTTTTATTTTAGTAT+TGG | + | chr1.3:49235104-49235123 | MS.gene23966:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | + | chr1.3:49236650-49236669 | MS.gene23966:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | - | chr1.3:49237311-49237330 | None:intergenic | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | + | chr1.3:49235283-49235302 | MS.gene23966:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | + | chr1.3:49236244-49236263 | MS.gene23966:intron | 20.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | + | chr1.3:49234327-49234346 | MS.gene23966:intron | 20.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | + | chr1.3:49235535-49235554 | MS.gene23966:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | - | chr1.3:49236137-49236156 | None:intergenic | 25.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | - | chr1.3:49233986-49234005 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr1.3:49234583-49234602 | MS.gene23966:intron | 25.0% |
| ! | AGTCTGTTTAGAAAAGTTTA+CGG | - | chr1.3:49234627-49234646 | None:intergenic | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | + | chr1.3:49235374-49235393 | MS.gene23966:intron | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | + | chr1.3:49237474-49237493 | MS.gene23966:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | + | chr1.3:49235135-49235154 | MS.gene23966:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | + | chr1.3:49235293-49235312 | MS.gene23966:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | + | chr1.3:49235917-49235936 | MS.gene23966:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | + | chr1.3:49235058-49235077 | MS.gene23966:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | + | chr1.3:49235230-49235249 | MS.gene23966:intron | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | + | chr1.3:49236150-49236169 | MS.gene23966:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | - | chr1.3:49235521-49235540 | None:intergenic | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | - | chr1.3:49236379-49236398 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | - | chr1.3:49237307-49237326 | None:intergenic | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | + | chr1.3:49236946-49236965 | MS.gene23966:intron | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | - | chr1.3:49236380-49236399 | None:intergenic | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | + | chr1.3:49236947-49236966 | MS.gene23966:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | + | chr1.3:49235180-49235199 | MS.gene23966:intron | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | - | chr1.3:49237399-49237418 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTTTC+AGG | + | chr1.3:49234897-49234916 | MS.gene23966:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | + | chr1.3:49235211-49235230 | MS.gene23966:intron | 25.0% |
| !!! | ATTTTGGTACTTTGTTTTCA+GGG | + | chr1.3:49234898-49234917 | MS.gene23966:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | + | chr1.3:49236517-49236536 | MS.gene23966:intron | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | + | chr1.3:49236516-49236535 | MS.gene23966:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | - | chr1.3:49237221-49237240 | None:intergenic | 25.0% |
| AAGTTGCACATATGATTCTA+CGG | + | chr1.3:49236973-49236992 | MS.gene23966:intron | 30.0% | |
| AATGAATGATAAGGAAAGGA+AGG | - | chr1.3:49233918-49233937 | None:intergenic | 30.0% | |
| ACAGGCATAGAAAAAGAAAT+TGG | + | chr1.3:49234223-49234242 | MS.gene23966:intron | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | - | chr1.3:49235974-49235993 | None:intergenic | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | + | chr1.3:49234370-49234389 | MS.gene23966:CDS | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | - | chr1.3:49234183-49234202 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | - | chr1.3:49233922-49233941 | None:intergenic | 30.0% | |
| ATGTATGGTAAACATAGATG+TGG | - | chr1.3:49237524-49237543 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | - | chr1.3:49236156-49236175 | None:intergenic | 30.0% | |
| CATCACTACAGAGTAATTTA+TGG | - | chr1.3:49235477-49235496 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | - | chr1.3:49235979-49235998 | None:intergenic | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | - | chr1.3:49236145-49236164 | None:intergenic | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | + | chr1.3:49235880-49235899 | MS.gene23966:intron | 30.0% | |
| GAAAATTACATTACCTCTAG+TGG | - | chr1.3:49234096-49234115 | None:intergenic | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | + | chr1.3:49234369-49234388 | MS.gene23966:CDS | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | + | chr1.3:49236900-49236919 | MS.gene23966:intron | 30.0% | |
| GGAAACTTTGCAATCTTAAA+AGG | - | chr1.3:49235319-49235338 | None:intergenic | 30.0% | |
| GTACATTAGCAAATGTATCT+AGG | + | chr1.3:49236674-49236693 | MS.gene23966:intron | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | + | chr1.3:49236299-49236318 | MS.gene23966:intron | 30.0% | |
| TAAGTTGTTTATCCAAACAG+AGG | - | chr1.3:49234464-49234483 | None:intergenic | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | + | chr1.3:49236352-49236371 | MS.gene23966:intron | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | + | chr1.3:49236041-49236060 | MS.gene23966:intron | 30.0% | |
| TATTAGCAAGTTACACCTTT+AGG | - | chr1.3:49236496-49236515 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | - | chr1.3:49237539-49237558 | None:intergenic | 30.0% | |
| TGAAAATCTCAGCTATACAT+TGG | + | chr1.3:49235879-49235898 | MS.gene23966:intron | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | - | chr1.3:49234224-49234243 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | - | chr1.3:49235859-49235878 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | + | chr1.3:49236478-49236497 | MS.gene23966:intron | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | - | chr1.3:49235871-49235890 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | - | chr1.3:49235576-49235595 | None:intergenic | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | - | chr1.3:49235169-49235188 | None:intergenic | 30.0% |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | + | chr1.3:49235359-49235378 | MS.gene23966:intron | 30.0% |
| ! | TCTTTAAAAACTAAGGATGG+AGG | - | chr1.3:49237304-49237323 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | - | chr1.3:49237398-49237417 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | - | chr1.3:49237400-49237419 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGTCATCT+TGG | + | chr1.3:49234548-49234567 | MS.gene23966:intron | 30.0% |
| !!! | ACACGATTTTTGTTTTATCG+AGG | + | chr1.3:49236756-49236775 | MS.gene23966:intron | 30.0% |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | - | chr1.3:49235563-49235582 | None:intergenic | 30.0% |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | - | chr1.3:49236420-49236439 | None:intergenic | 30.0% |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | + | chr1.3:49236565-49236584 | MS.gene23966:intron | 30.0% |
| !!! | TTCTGTTTTATTTACACTCC+TGG | + | chr1.3:49237180-49237199 | MS.gene23966:intron | 30.0% |
| !!! | TTTTGGTACTTTGTTTTCAG+GGG | + | chr1.3:49234899-49234918 | MS.gene23966:intron | 30.0% |
| AACTAAGGATGGAGGAAAAA+TGG | - | chr1.3:49237296-49237315 | None:intergenic | 35.0% | |
| AATGTGATTTAGCCTCTGTT+TGG | + | chr1.3:49234449-49234468 | MS.gene23966:intron | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | + | chr1.3:49235449-49235468 | MS.gene23966:intron | 35.0% | |
| ACTTTGCAATCTTAAAAGGC+CGG | - | chr1.3:49235315-49235334 | None:intergenic | 35.0% | |
| AGAATACTGAAAATGTCAGC+AGG | + | chr1.3:49237240-49237259 | MS.gene23966:CDS | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | + | chr1.3:49235379-49235398 | MS.gene23966:intron | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | + | chr1.3:49235776-49235795 | MS.gene23966:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | - | chr1.3:49235448-49235467 | None:intergenic | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | - | chr1.3:49235731-49235750 | None:intergenic | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | + | chr1.3:49234801-49234820 | MS.gene23966:CDS | 35.0% | |
| CCTAGCACTATTAATTCCTA+AGG | - | chr1.3:49235980-49235999 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | + | chr1.3:49234942-49234961 | MS.gene23966:intron | 35.0% | |
| CCTGCATGAATAATAAGCAT+AGG | - | chr1.3:49234945-49234964 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | + | chr1.3:49235977-49235996 | MS.gene23966:intron | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | - | chr1.3:49237630-49237649 | None:intergenic | 35.0% | |
| GACAGTAAGAAAATGCAGTA+TGG | - | chr1.3:49237272-49237291 | None:intergenic | 35.0% | |
| GAGTGATCGAATGAATGATA+AGG | - | chr1.3:49233927-49233946 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | - | chr1.3:49237603-49237622 | None:intergenic | 35.0% | |
| GGCTAATAGCTAAATTGACA+AGG | + | chr1.3:49236899-49236918 | MS.gene23966:intron | 35.0% | |
| GGTAAACATAGATGTGGATT+CGG | - | chr1.3:49237518-49237537 | None:intergenic | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | - | chr1.3:49234888-49234907 | None:intergenic | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | - | chr1.3:49236357-49236376 | None:intergenic | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | + | chr1.3:49234767-49234786 | MS.gene23966:CDS | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | - | chr1.3:49236405-49236424 | None:intergenic | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | - | chr1.3:49235515-49235534 | None:intergenic | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | + | chr1.3:49236196-49236215 | MS.gene23966:intron | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | + | chr1.3:49235735-49235754 | MS.gene23966:CDS | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | - | chr1.3:49235085-49235104 | None:intergenic | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | + | chr1.3:49235986-49236005 | MS.gene23966:intron | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | + | chr1.3:49235334-49235353 | MS.gene23966:intron | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | + | chr1.3:49236466-49236485 | MS.gene23966:intron | 35.0% |
| ! | GCTGAGATTTTCAACAATTC+TGG | - | chr1.3:49235872-49235891 | None:intergenic | 35.0% |
| ! | TTTAAAAGAGTACAGACGAC+TGG | - | chr1.3:49237134-49237153 | None:intergenic | 35.0% |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | - | chr1.3:49235164-49235183 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | - | chr1.3:49237397-49237416 | None:intergenic | 35.0% |
| !! | TTTCTTTAAGACATAGAGGG+GGG | - | chr1.3:49237396-49237415 | None:intergenic | 35.0% |
| !!! | TTTGGTACTTTGTTTTCAGG+GGG | + | chr1.3:49234900-49234919 | MS.gene23966:intron | 35.0% |
| AAAGCGAAATTGAATGACGG+TGG | - | chr1.3:49233983-49234002 | None:intergenic | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | - | chr1.3:49235676-49235695 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | + | chr1.3:49235087-49235106 | MS.gene23966:intron | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | - | chr1.3:49236575-49236594 | None:intergenic | 40.0% | |
| CAGAGAGAGTAAACGTGAAA+TGG | + | chr1.3:49234064-49234083 | MS.gene23966:CDS | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | - | chr1.3:49235340-49235359 | None:intergenic | 40.0% | |
| CCAGAAACAATCAGCACAAA+TGG | + | chr1.3:49235592-49235611 | MS.gene23966:CDS | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | - | chr1.3:49236574-49236593 | None:intergenic | 40.0% | |
| CTGCGACTAAAATATTAGCC+AGG | + | chr1.3:49234760-49234779 | MS.gene23966:CDS | 40.0% | |
| CTTGTTCAAGGTTAAGGGTT+AGG | + | chr1.3:49235261-49235280 | MS.gene23966:intron | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | + | chr1.3:49235768-49235787 | MS.gene23966:CDS | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | - | chr1.3:49235084-49235103 | None:intergenic | 40.0% | |
| GGCAATGGAAGCTATGAATA+AGG | + | chr1.3:49235014-49235033 | MS.gene23966:CDS | 40.0% | |
| GTTCGTGTTTCCACATCTAA+TGG | + | chr1.3:49235663-49235682 | MS.gene23966:intron | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | - | chr1.3:49234090-49234109 | None:intergenic | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | + | chr1.3:49233890-49233909 | MS.gene23966:CDS | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | - | chr1.3:49236051-49236070 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | + | chr1.3:49236976-49236995 | MS.gene23966:intron | 40.0% | |
| TTGCGGAAGGTCTTACAAAT+TGG | + | chr1.3:49235197-49235216 | MS.gene23966:intron | 40.0% | |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | - | chr1.3:49233908-49233927 | None:intergenic | 40.0% |
| ! | CCAAGCTTGTTCAAGGTTAA+GGG | + | chr1.3:49235256-49235275 | MS.gene23966:intron | 40.0% |
| ! | GGTCCATCTGATGCTAATTT+TGG | + | chr1.3:49234882-49234901 | MS.gene23966:intron | 40.0% |
| ! | TATCATCATGCACCTTTTGC+AGG | + | chr1.3:49234737-49234756 | MS.gene23966:intron | 40.0% |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | + | chr1.3:49235255-49235274 | MS.gene23966:intron | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | - | chr1.3:49234022-49234041 | None:intergenic | 40.0% |
| !! | CCATTTGTGCTGATTGTTTC+TGG | - | chr1.3:49235595-49235614 | None:intergenic | 40.0% |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | - | chr1.3:49234021-49234040 | None:intergenic | 40.0% |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | - | chr1.3:49233894-49233913 | None:intergenic | 40.0% |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | + | chr1.3:49235184-49235203 | MS.gene23966:intron | 40.0% |
| AACCTCTGCATGGATAGAGA+AGG | - | chr1.3:49234042-49234061 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | + | chr1.3:49234378-49234397 | MS.gene23966:CDS | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | + | chr1.3:49234858-49234877 | MS.gene23966:intron | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | - | chr1.3:49234041-49234060 | None:intergenic | 45.0% | |
| AGATGCCATCGATGATGTCT+TGG | + | chr1.3:49235723-49235742 | MS.gene23966:CDS | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | - | chr1.3:49235956-49235975 | None:intergenic | 45.0% | |
| ATGTATCATGTATCGGGCCA+TGG | - | chr1.3:49235078-49235097 | None:intergenic | 45.0% | |
| CAGTTATCAGCAGCTCCAAA+AGG | + | chr1.3:49237203-49237222 | MS.gene23966:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | - | chr1.3:49237619-49237638 | None:intergenic | 45.0% | |
| CCCTTAACCTTGAACAAGCT+TGG | - | chr1.3:49235259-49235278 | None:intergenic | 45.0% | |
| CGAAATTGAATGACGGTGGA+AGG | - | chr1.3:49233979-49233998 | None:intergenic | 45.0% | |
| CTTACTAGCACCTTTCATGC+CGG | - | chr1.3:49234995-49235014 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | - | chr1.3:49236191-49236210 | None:intergenic | 45.0% | |
| TATTAGCCAGGCAGTTGGTT+AGG | + | chr1.3:49234772-49234791 | MS.gene23966:CDS | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | + | chr1.3:49235885-49235904 | MS.gene23966:intron | 45.0% | |
| TGGCAGGTACTCGATGAAAT+CGG | + | chr1.3:49237054-49237073 | MS.gene23966:intron | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | - | chr1.3:49236192-49236211 | None:intergenic | 45.0% | |
| TTCTACGTGTGTTATCCCTG+GGG | - | chr1.3:49236190-49236209 | None:intergenic | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | - | chr1.3:49234818-49234837 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | + | chr1.3:49235249-49235268 | MS.gene23966:intron | 45.0% |
| ! | GTTGCATTTTATGCACCCCA+GGG | + | chr1.3:49236172-49236191 | MS.gene23966:intron | 45.0% |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | - | chr1.3:49234752-49234771 | None:intergenic | 45.0% |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | + | chr1.3:49237082-49237101 | MS.gene23966:intron | 45.0% |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | + | chr1.3:49234999-49235018 | MS.gene23966:CDS | 45.0% |
| !! | GCTCAGTCTTCTATTTCTGC+CGG | + | chr1.3:49234973-49234992 | MS.gene23966:CDS | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | + | chr1.3:49234982-49235001 | MS.gene23966:CDS | 45.0% |
| !! | TGATGACATCGAGAAGCGTT+TGG | + | chr1.3:49237634-49237653 | MS.gene23966:CDS | 45.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | - | chr1.3:49233902-49233921 | None:intergenic | 45.0% |
| !!! | GTACTTTGTTTTCAGGGGGT+GGG | + | chr1.3:49234904-49234923 | MS.gene23966:intron | 45.0% |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | + | chr1.3:49236535-49236554 | MS.gene23966:intron | 45.0% |
| !! | TTAAAAAAAAAAAAAAAACT+AGG | - | chr1.3:49234431-49234450 | None:intergenic | 5.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | - | chr1.3:49236875-49236894 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | + | chr1.3:49236874-49236893 | MS.gene23966:intron | 5.0% |
| !!! | TTACATTTTTTTTTTTTTTT+TGG | + | chr1.3:49234147-49234166 | MS.gene23966:intron | 5.0% |
| AGGCATAGCAACTCACACAC+AGG | + | chr1.3:49234842-49234861 | MS.gene23966:CDS | 50.0% | |
| ATCCTGTGTTCCGATCCCTT+AGG | + | chr1.3:49235961-49235980 | MS.gene23966:intron | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | + | chr1.3:49234861-49234880 | MS.gene23966:intron | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | - | chr1.3:49234040-49234059 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | - | chr1.3:49234039-49234058 | None:intergenic | 50.0% | |
| GAAATGGCCAATGCCACTAG+AGG | + | chr1.3:49234080-49234099 | MS.gene23966:CDS | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | + | chr1.3:49234822-49234841 | MS.gene23966:CDS | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | - | chr1.3:49236058-49236077 | None:intergenic | 50.0% | |
| TCTGCATGGATAGAGAAGGG+GGG | - | chr1.3:49234038-49234057 | None:intergenic | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | - | chr1.3:49235966-49235985 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | + | chr1.3:49236171-49236190 | MS.gene23966:intron | 50.0% |
| ! | GTGGATGTTGCTTCACAGGT+TGG | + | chr1.3:49237078-49237097 | MS.gene23966:intron | 50.0% |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | - | chr1.3:49234052-49234071 | None:intergenic | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | + | chr1.3:49234993-49235012 | MS.gene23966:CDS | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | + | chr1.3:49237637-49237656 | MS.gene23966:CDS | 50.0% |
| !!! | GGTACTTTGTTTTCAGGGGG+TGG | + | chr1.3:49234903-49234922 | MS.gene23966:intron | 50.0% |
| AGACATAGAGGGGGGACTGT+TGG | - | chr1.3:49237388-49237407 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | + | chr1.3:49234778-49234797 | MS.gene23966:CDS | 55.0% | |
| CCCCTTCTCTATCCATGCAG+AGG | + | chr1.3:49234037-49234056 | MS.gene23966:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | - | chr1.3:49234781-49234800 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | - | chr1.3:49237378-49237397 | None:intergenic | 55.0% | |
| GGTACTCGATGAAATCGGCG+TGG | + | chr1.3:49237059-49237078 | MS.gene23966:intron | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | - | chr1.3:49237383-49237402 | None:intergenic | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | - | chr1.3:49237201-49237220 | None:intergenic | 55.0% | |
| GGGGGGACTGTTGGAATGGA+TGG | - | chr1.3:49237379-49237398 | None:intergenic | 60.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | + | chr1.3:49237074-49237093 | MS.gene23966:CDS | 60.0% |
| CGCGCGCGCACACACACACT+TGG | + | chr1.3:49236722-49236741 | MS.gene23966:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 49233866 | 49237676 | 49233866 | ID=MS.gene23966 |
| chr1.3 | mRNA | 49233866 | 49237676 | 49233866 | ID=MS.gene23966.t1;Parent=MS.gene23966 |
| chr1.3 | exon | 49233866 | 49233911 | 49233866 | ID=MS.gene23966.t1.exon1;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49233866 | 49233911 | 49233866 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49234057 | 49234101 | 49234057 | ID=MS.gene23966.t1.exon2;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49234057 | 49234101 | 49234057 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49234227 | 49234261 | 49234227 | ID=MS.gene23966.t1.exon3;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49234227 | 49234261 | 49234227 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49234349 | 49234399 | 49234349 | ID=MS.gene23966.t1.exon4;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49234349 | 49234399 | 49234349 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49234759 | 49234863 | 49234759 | ID=MS.gene23966.t1.exon5;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49234759 | 49234863 | 49234759 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49234964 | 49235035 | 49234964 | ID=MS.gene23966.t1.exon6;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49234964 | 49235035 | 49234964 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49235551 | 49235622 | 49235551 | ID=MS.gene23966.t1.exon7;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49235551 | 49235622 | 49235551 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49235709 | 49235789 | 49235709 | ID=MS.gene23966.t1.exon8;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49235709 | 49235789 | 49235709 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49237060 | 49237095 | 49237060 | ID=MS.gene23966.t1.exon9;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49237060 | 49237095 | 49237060 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49237206 | 49237261 | 49237206 | ID=MS.gene23966.t1.exon10;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49237206 | 49237261 | 49237206 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| chr1.3 | exon | 49237625 | 49237676 | 49237625 | ID=MS.gene23966.t1.exon11;Parent=MS.gene23966.t1 |
| chr1.3 | CDS | 49237625 | 49237676 | 49237625 | ID=cds.MS.gene23966.t1;Parent=MS.gene23966.t1 |
| Gene Sequence |
| Protein sequence |
