AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055555


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055555.t1 MTR_1g082650 94.692 584 11 9 1 571 1 577 0.0 1035
MS.gene055555.t1 MTR_2g022250 68.354 79 25 0 1 79 1 79 2.15e-29 122
MS.gene055555.t1 MTR_1g107565 66.667 78 23 1 1 75 1 78 5.17e-28 116
MS.gene055555.t1 MTR_4g117220 64.103 78 28 0 1 78 1 78 1.22e-26 114
MS.gene055555.t1 MTR_2g022240 63.158 76 28 0 1 76 1 76 3.55e-24 106
MS.gene055555.t1 MTR_7g108560 57.143 70 30 0 5 74 17 86 1.76e-19 89.7
MS.gene055555.t1 MTR_3g067750 52.113 71 34 0 3 73 5 75 1.54e-18 84.7
MS.gene055555.t1 MTR_4g119820 55.224 67 30 0 7 73 71 137 5.71e-18 86.3
MS.gene055555.t1 MTR_7g113110 54.545 66 30 0 9 74 32 97 3.76e-17 84.0
MS.gene055555.t1 MTR_1g083310 52.174 69 32 1 7 74 12 80 1.67e-16 82.0
MS.gene055555.t1 MTR_8g091420 60.656 61 24 0 14 74 33 93 5.71e-15 72.8
MS.gene055555.t1 MTR_2g436830 54.412 68 31 0 7 74 12 79 1.82e-14 74.7
MS.gene055555.t1 MTR_3g087770 54.545 66 30 0 9 74 29 94 5.92e-14 70.1
MS.gene055555.t1 MTR_6g026890 42.254 71 37 1 8 74 10 80 2.89e-13 67.8
MS.gene055555.t1 MTR_7g113750 43.373 83 41 3 1 81 6 84 9.90e-13 70.5
MS.gene055555.t1 MTR_2g018790 39.474 76 45 1 4 78 2 77 1.19e-12 69.3
MS.gene055555.t1 MTR_6g003990 41.791 67 38 1 9 74 29 95 1.54e-12 65.9
MS.gene055555.t1 MTR_5g025150 40.278 72 43 0 3 74 16 87 8.29e-12 63.5
MS.gene055555.t1 MTR_4g073040 41.096 73 42 1 3 74 21 93 1.04e-11 63.5
MS.gene055555.t1 MTR_1g078090 43.243 74 42 0 1 74 44 117 1.37e-11 63.9
MS.gene055555.t1 MTR_5g022620 42.647 68 38 1 8 74 27 94 2.08e-11 62.8
MS.gene055555.t1 MTR_7g083060 40.541 74 43 1 2 74 16 89 3.85e-11 61.6
MS.gene055555.t1 MTR_1g030630 39.394 66 40 0 9 74 24 89 4.38e-11 61.6
MS.gene055555.t1 MTR_3g073670 37.349 83 49 1 14 93 30 112 4.76e-11 61.6
MS.gene055555.t1 MTR_2g091235 41.026 78 45 1 14 91 6 82 5.99e-11 61.2
MS.gene055555.t1 MTR_1g092670 42.647 68 39 0 7 74 1 68 6.63e-11 58.9
MS.gene055555.t1 MTR_3g435930 47.761 67 34 1 9 74 115 181 7.78e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055555.t1 AT5G19090 63.366 101 36 1 1 101 1 100 1.65e-32 130
MS.gene055555.t1 AT5G19090 63.366 101 36 1 1 101 1 100 1.65e-32 130
MS.gene055555.t1 AT5G19090 63.366 101 36 1 1 101 1 100 5.38e-32 130
MS.gene055555.t1 AT5G19090 63.366 101 36 1 1 101 1 100 5.38e-32 130
MS.gene055555.t1 AT5G19090 63.366 101 36 1 1 101 1 100 5.38e-32 130
MS.gene055555.t1 AT3G05220 57.143 112 43 1 1 112 1 107 1.79e-29 123
MS.gene055555.t1 AT1G23000 47.656 128 54 4 6 132 9 124 6.88e-24 103
MS.gene055555.t1 AT1G23000 47.656 128 54 4 6 132 69 184 2.47e-23 103
MS.gene055555.t1 AT5G27690 47.059 85 45 0 7 91 27 111 2.75e-22 99.0
MS.gene055555.t1 AT5G37860 58.462 65 27 0 9 73 9 73 5.84e-19 87.4
MS.gene055555.t1 AT1G56210 58.730 63 26 0 10 72 40 102 2.19e-17 84.7
MS.gene055555.t1 AT1G06330 50.820 61 30 0 14 74 6 66 1.27e-13 68.9
MS.gene055555.t1 AT4G08570 47.059 68 35 1 8 74 24 91 5.29e-13 67.4
MS.gene055555.t1 AT1G22990 41.975 81 44 2 3 82 24 102 5.65e-12 64.3
MS.gene055555.t1 AT2G37390 47.692 65 33 1 10 74 181 244 7.23e-12 66.2
MS.gene055555.t1 AT2G37390 47.692 65 33 1 10 74 180 243 7.41e-12 66.2
MS.gene055555.t1 AT3G02960 41.892 74 42 1 3 75 119 192 1.44e-11 65.5
MS.gene055555.t1 AT5G02600 49.231 65 32 1 10 74 250 313 2.00e-11 65.9
MS.gene055555.t1 AT5G02600 49.231 65 32 1 10 74 250 313 2.00e-11 65.9
MS.gene055555.t1 AT1G22990 42.254 71 40 1 13 82 27 97 2.38e-11 62.4
MS.gene055555.t1 AT1G71050 40.909 66 39 0 9 74 27 92 3.23e-11 62.0
MS.gene055555.t1 AT4G23882 46.970 66 34 1 9 73 77 142 3.24e-11 64.7
MS.gene055555.t1 AT3G56891 45.902 61 33 0 14 74 20 80 4.51e-11 62.0
MS.gene055555.t1 AT5G17450 42.424 66 38 0 9 74 25 90 6.34e-11 61.2

Find 165 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTACCATGTCCATTAT+TGG 0.170658 1.2:+60247258 None:intergenic
GGGCCTCCAGGCAATGGATT+TGG 0.269551 1.2:-60247910 MS.gene055555:CDS
ACATCCATCAATGAACTATA+TGG 0.284194 1.2:-60246864 MS.gene055555:CDS
GCCAAGGGCAATGCCAATAA+TGG 0.314955 1.2:-60247271 MS.gene055555:CDS
GATGGAGGTAAGAAGAATAA+AGG 0.317363 1.2:-60247619 MS.gene055555:CDS
TGCTGTTGCTGTTGCTGATA+AGG 0.318669 1.2:+60247031 None:intergenic
CTAGTTAAGTTTCTAGGGCT+TGG 0.332945 1.2:-60247502 MS.gene055555:CDS
CAGGGAAACATGCTGAACTA+TGG 0.336084 1.2:-60248269 MS.gene055555:CDS
CTGCCGGCATGCTCCTCATT+TGG 0.337899 1.2:+60247131 None:intergenic
TGCTGTTGCTGATAAGGATT+TGG 0.339759 1.2:+60247037 None:intergenic
GCCGGCAGTGCAAGGGTTAC+CGG 0.341648 1.2:-60247116 MS.gene055555:CDS
ACAAGATATGATGAAAATTC+AGG 0.346135 1.2:-60248935 MS.gene055555:intron
AATGGACATGGTAATAATAA+TGG 0.358191 1.2:-60247253 MS.gene055555:CDS
GGCCTCCAGGCAATGGATTT+GGG 0.369230 1.2:-60247909 MS.gene055555:CDS
GGGGAAAAGCAAAAGGGTGG+TGG 0.371759 1.2:-60247598 MS.gene055555:CDS
CAGAATCAAAAGGGTCAAAA+AGG 0.373373 1.2:-60248135 MS.gene055555:CDS
GGGGCAGCTGCGGCGATGAA+TGG 0.373441 1.2:-60247091 MS.gene055555:CDS
ATGGTAATAATAATGGTAAT+GGG 0.379392 1.2:-60247246 MS.gene055555:CDS
ACCATTACCTGGGATGTTCA+TGG 0.380238 1.2:+60247783 None:intergenic
AACATGTTTCTGAGATTTGT+TGG 0.389321 1.2:+60248056 None:intergenic
CCTCCTCCTTTACCATTACC+TGG 0.392465 1.2:+60247772 None:intergenic
ATGGAGGTAAGAAGAATAAA+GGG 0.400340 1.2:-60247618 MS.gene055555:CDS
GAGGATGAAGAAGAGGAGTT+TGG 0.403036 1.2:-60247961 MS.gene055555:CDS
TCTGATTCATTGCACCCATC+TGG 0.405299 1.2:+60247203 None:intergenic
GAAAAGCAAAAGGGTGGTGG+GGG 0.405813 1.2:-60247595 MS.gene055555:CDS
AAAAGTGGTAAGGGTGGAAA+TGG 0.412152 1.2:-60247319 MS.gene055555:CDS
CAGTGCAAGGGTTACCGGCC+GGG 0.416864 1.2:-60247111 MS.gene055555:CDS
TCCATTATTGGCATTGCCCT+TGG 0.417589 1.2:+60247270 None:intergenic
GGAAAAGCAAAAGGGTGGTG+GGG 0.418059 1.2:-60247596 MS.gene055555:CDS
GCCGGTAACCCTTGCACTGC+CGG 0.421629 1.2:+60247115 None:intergenic
CATGGTAATAATAATGGTAA+TGG 0.423098 1.2:-60247247 MS.gene055555:CDS
GGTGGAAATGGAAATGGAAA+TGG 0.432449 1.2:-60247307 MS.gene055555:CDS
AATGGTCGTGGGCCACAGCT+AGG 0.432834 1.2:-60247841 MS.gene055555:CDS
AGTGCAAGGGTTACCGGCCG+GGG 0.435816 1.2:-60247110 MS.gene055555:CDS
GAATAAAGGGGAAAAGCAAA+AGG 0.443691 1.2:-60247605 MS.gene055555:CDS
GGTAATGGAGGTGGTAAGAA+AGG 0.449463 1.2:-60247649 MS.gene055555:CDS
TATCCACAACATATGATGTA+TGG 0.452805 1.2:-60246899 MS.gene055555:CDS
TGCAAATGGATAATAACAAA+GGG 0.454184 1.2:-60248176 MS.gene055555:CDS
TTATTGGCATTGCCCTTGGC+AGG 0.454606 1.2:+60247274 None:intergenic
AAACTGCTTCAGAAAATTGA+AGG 0.457319 1.2:-60248734 MS.gene055555:intron
ACCTATGCAAATGCAGATGA+AGG 0.459346 1.2:-60247704 MS.gene055555:CDS
TAACAAGCCTCAGAATCAAA+AGG 0.459361 1.2:-60248145 MS.gene055555:CDS
GTAATGGAGGTGGTAAGAAA+GGG 0.460661 1.2:-60247648 MS.gene055555:CDS
ACATGTTTCTGAGATTTGTT+GGG 0.462682 1.2:+60248057 None:intergenic
GGGAAAAGCAAAAGGGTGGT+GGG 0.463087 1.2:-60247597 MS.gene055555:CDS
TCTGGCCCATTGGACCCATA+TGG 0.464410 1.2:+60247221 None:intergenic
GGTAAGGGTGGAAATGGAAA+TGG 0.465972 1.2:-60247313 MS.gene055555:CDS
TCACTGAAAACATGAGTGAT+TGG 0.466485 1.2:+60246806 None:intergenic
TGCTGCCCAAATCCATTGCC+TGG 0.470924 1.2:+60247904 None:intergenic
GTGGAAATGGAAATGGAAAT+GGG 0.471325 1.2:-60247306 MS.gene055555:CDS
CAAGGGAAGGTGTTGGTGAC+AGG 0.475651 1.2:-60248333 MS.gene055555:CDS
TCCTCATGGTAAAAGTGGTA+AGG 0.478115 1.2:-60247329 MS.gene055555:CDS
TCAGTTTAAGAACATGCAAA+TGG 0.478310 1.2:-60248190 MS.gene055555:CDS
AATGGTAAAGGAGGAGGTGG+TGG 0.479249 1.2:-60247766 MS.gene055555:CDS
CCACAGCTAGGGCCTGGTGA+TGG 0.480756 1.2:-60247829 MS.gene055555:CDS
AGGGAAACATGCTGAACTAT+GGG 0.482972 1.2:-60248268 MS.gene055555:CDS
AATGGGTCAGATGGGTTCAA+TGG 0.483632 1.2:-60247155 MS.gene055555:CDS
ATTGCACCCATCTGGCCCAT+TGG 0.483802 1.2:+60247211 None:intergenic
AAGGGTAAAAGTGGAAATTA+CGG 0.485308 1.2:-60247685 MS.gene055555:CDS
ATCACTCCTCATGGTAAAAG+TGG 0.485671 1.2:-60247334 MS.gene055555:CDS
ATTCATCGCCGCAGCTGCCC+CGG 0.485684 1.2:+60247093 None:intergenic
ATGAATAAGATGGGTCCAAT+GGG 0.487266 1.2:-60247172 MS.gene055555:CDS
GCAGTGCAAGGGTTACCGGC+CGG 0.488422 1.2:-60247112 MS.gene055555:CDS
GGCCATGGTCAAGGGCCTCC+AGG 0.488629 1.2:-60247922 MS.gene055555:CDS
CATGGTCATGGCCATGGTCA+AGG 0.488816 1.2:-60247931 MS.gene055555:CDS
GAGGAGTGATATCAAAGTCT+TGG 0.489452 1.2:+60247347 None:intergenic
CGTGGGCCACAGCTAGGGCC+TGG 0.491267 1.2:-60247835 MS.gene055555:CDS
ATCGCCGCAGCTGCCCCGGC+CGG 0.491724 1.2:+60247097 None:intergenic
GATGGGTCCAATGGGTCAGA+TGG 0.493165 1.2:-60247164 MS.gene055555:CDS
AACAACAGCAAAGGGAAAGA+AGG 0.496636 1.2:-60247409 MS.gene055555:CDS
AGGAGCATGCCGGCAGTGCA+AGG 0.498242 1.2:-60247124 MS.gene055555:CDS
GTTACCGGCCGGGGCAGCTG+CGG 0.501977 1.2:-60247101 MS.gene055555:CDS
ACCAATGCCATCACACCCTA+TGG 0.502702 1.2:-60246834 MS.gene055555:CDS
GCCATGAACATCCCAGGTAA+TGG 0.503054 1.2:-60247784 MS.gene055555:CDS
CCTGGGATGTTCATGGCAGC+AGG 0.506128 1.2:+60247790 None:intergenic
TGCCTGGAGGCCCTTGACCA+TGG 0.506822 1.2:+60247920 None:intergenic
GGTGATGGTATGATGATGAA+TGG 0.512661 1.2:-60247814 MS.gene055555:CDS
GGTCAAGGGCCTCCAGGCAA+TGG 0.514555 1.2:-60247916 MS.gene055555:CDS
CATCCATCAATGAACTATAT+GGG 0.516767 1.2:-60246863 MS.gene055555:CDS
GCATAATAACAAAATGATGA+TGG 0.517505 1.2:-60247875 MS.gene055555:CDS
GATGGCAGCAATGAATAAGA+TGG 0.517515 1.2:-60247182 MS.gene055555:CDS
ATTGAACCCATCTGACCCAT+TGG 0.518800 1.2:+60247157 None:intergenic
TCTGTAGAATTGTCTTCTCA+AGG 0.518947 1.2:-60248795 MS.gene055555:intron
TATGGGTCCAATGGGCCAGA+TGG 0.519343 1.2:-60247218 MS.gene055555:CDS
ATTTGCATGTTCTTAAACTG+AGG 0.523768 1.2:+60248192 None:intergenic
ATGAATGGTGGCTATTATCA+AGG 0.526298 1.2:-60247076 MS.gene055555:CDS
ATGGTCGTGGGCCACAGCTA+GGG 0.529327 1.2:-60247840 MS.gene055555:CDS
ATGGGTCCAATGGGCCAGAT+GGG 0.532006 1.2:-60247217 MS.gene055555:CDS
ATATAGTTCATTGATGGATG+TGG 0.537347 1.2:+60246866 None:intergenic
TTGTGAAGGTTGTGAGCAGA+AGG 0.537353 1.2:-60248762 MS.gene055555:CDS
CTCCTCCTTTACCATTACCT+GGG 0.537413 1.2:+60247773 None:intergenic
AACATCCCAGGTAATGGTAA+AGG 0.537780 1.2:-60247778 MS.gene055555:CDS
ATAGCAACAACAACAGCAAA+GGG 0.537937 1.2:-60247417 MS.gene055555:CDS
GGGTGTGATGGCATTGGTGG+CGG 0.538638 1.2:+60246839 None:intergenic
GCTATGATGCAGAATGGTCG+TGG 0.539141 1.2:-60247853 MS.gene055555:CDS
AAAGGGAAAGAAGGTAAGAA+AGG 0.540026 1.2:-60247400 MS.gene055555:CDS
CACGGACATGGTCATGGCCA+TGG 0.540291 1.2:-60247937 MS.gene055555:CDS
GGTCCCATATAGTTCATTGA+TGG 0.543358 1.2:+60246860 None:intergenic
ATGCAGATGAAGGGTAAAAG+TGG 0.544101 1.2:-60247694 MS.gene055555:CDS
ATAGGGTGTGATGGCATTGG+TGG 0.545253 1.2:+60246836 None:intergenic
GCCATAGGGTGTGATGGCAT+TGG 0.546440 1.2:+60246833 None:intergenic
GAGGAGTTTGGTCACGGACA+TGG 0.551855 1.2:-60247949 MS.gene055555:CDS
TGGGTTCAATGGACCAAATG+AGG 0.553719 1.2:-60247144 MS.gene055555:CDS
AACAAGCCTCAGAATCAAAA+GGG 0.554574 1.2:-60248144 MS.gene055555:CDS
TAATGGAGGTGGTAAGAAAG+GGG 0.555785 1.2:-60247647 MS.gene055555:CDS
ATGGTCATGGCCATGGTCAA+GGG 0.556259 1.2:-60247930 MS.gene055555:CDS
CCCTTCATCTGCATTTGCAT+AGG 0.556545 1.2:+60247703 None:intergenic
AATGAATAAGATGGGTCCAA+TGG 0.557145 1.2:-60247173 MS.gene055555:CDS
CCAGGTAATGGTAAAGGAGG+AGG 0.560490 1.2:-60247772 MS.gene055555:CDS
TGGGAAAGGTGCTCCTGCCA+AGG 0.561931 1.2:-60247287 MS.gene055555:CDS
GCAGCTGCGGCGATGAATGG+TGG 0.562369 1.2:-60247088 MS.gene055555:CDS
GACTTTGATATCACTCCTCA+TGG 0.564860 1.2:-60247343 MS.gene055555:CDS
CCTCCATACATCATATGTTG+TGG 0.564896 1.2:+60246896 None:intergenic
ACAACAACAACAGCAATACA+TGG 0.565187 1.2:-60247008 MS.gene055555:CDS
GCACAGTTTCAAAATCCTAA+AGG 0.569465 1.2:-60248099 MS.gene055555:CDS
CCTCATGGTAAAAGTGGTAA+GGG 0.569715 1.2:-60247328 MS.gene055555:CDS
TTTGGTCACGGACATGGTCA+TGG 0.570828 1.2:-60247943 MS.gene055555:CDS
GGTAATAATAATGGTAATGG+GGG 0.572168 1.2:-60247244 MS.gene055555:CDS
ATGCAAATGGATAATAACAA+AGG 0.575532 1.2:-60248177 MS.gene055555:CDS
AAGGTTAATATCCATTGTGA+AGG 0.575780 1.2:-60248776 MS.gene055555:CDS
TGGTAATAATAATGGTAATG+GGG 0.579408 1.2:-60247245 MS.gene055555:CDS
ATGGGTCCAATGGGTCAGAT+GGG 0.580478 1.2:-60247163 MS.gene055555:CDS
GTGAATATAGATGCAGAACA+AGG 0.583193 1.2:-60248351 MS.gene055555:CDS
GTGATGGTATGATGATGAAT+GGG 0.583869 1.2:-60247813 MS.gene055555:CDS
GCAAATGGATAATAACAAAG+GGG 0.584331 1.2:-60248175 MS.gene055555:CDS
TGAGTGATTGGATCTGCCAT+AGG 0.585575 1.2:+60246818 None:intergenic
CCTGCTGCCATGAACATCCC+AGG 0.587642 1.2:-60247790 MS.gene055555:CDS
GGTAATGGTAAAGGAGGAGG+TGG 0.588777 1.2:-60247769 MS.gene055555:CDS
AATAAAGGGGAAAAGCAAAA+GGG 0.595467 1.2:-60247604 MS.gene055555:CDS
ATGGCAGCAATGAATAAGAT+GGG 0.598736 1.2:-60247181 MS.gene055555:CDS
TATAGATGCAGAACAAGGGA+AGG 0.601009 1.2:-60248346 MS.gene055555:CDS
GGATCTGCCATAGGGTGTGA+TGG 0.601407 1.2:+60246827 None:intergenic
CAACATATGATGTATGGAGG+AGG 0.605393 1.2:-60246893 MS.gene055555:CDS
CCTATGCAAATGCAGATGAA+GGG 0.607502 1.2:-60247703 MS.gene055555:CDS
TTCATCATCATACCATCACC+AGG 0.608129 1.2:+60247817 None:intergenic
AATAGCAACAACAACAGCAA+AGG 0.608297 1.2:-60247418 MS.gene055555:CDS
AATGGAAATGGAAATGGGAA+AGG 0.608664 1.2:-60247301 MS.gene055555:CDS
ATCCCAGGTAATGGTAAAGG+AGG 0.609225 1.2:-60247775 MS.gene055555:CDS
GGGAAAGGTGCTCCTGCCAA+GGG 0.613724 1.2:-60247286 MS.gene055555:CDS
GGACCAAATGAGGAGCATGC+CGG 0.615075 1.2:-60247134 MS.gene055555:CDS
CATGGTAAAAGTGGTAAGGG+TGG 0.615769 1.2:-60247325 MS.gene055555:CDS
TGCAGAACAAGGGAAGGTGT+TGG 0.615855 1.2:-60248340 MS.gene055555:CDS
GGAGCATGCCGGCAGTGCAA+GGG 0.616628 1.2:-60247123 MS.gene055555:CDS
GAAGAAGAGGAGTTTGGTCA+CGG 0.617819 1.2:-60247955 MS.gene055555:CDS
GATGGGTGCAATGAATCAGA+TGG 0.620881 1.2:-60247200 MS.gene055555:CDS
GGCAATGCCAATAATGGACA+TGG 0.622193 1.2:-60247265 MS.gene055555:CDS
AATGGAGGTGGTAAGAAAGG+GGG 0.629262 1.2:-60247646 MS.gene055555:CDS
CCATCACCAGGCCCTAGCTG+TGG 0.636272 1.2:+60247829 None:intergenic
AAAGGGGAAAAGCAAAAGGG+TGG 0.640635 1.2:-60247601 MS.gene055555:CDS
CCACAACATATGATGTATGG+AGG 0.641920 1.2:-60246896 MS.gene055555:CDS
GAGTGATTGGATCTGCCATA+GGG 0.655708 1.2:+60246819 None:intergenic
ATATGATGTATGGAGGAGGA+AGG 0.656963 1.2:-60246889 MS.gene055555:CDS
AAACATGCTGAACTATGGGG+TGG 0.661564 1.2:-60248264 MS.gene055555:CDS
TGAATATAGATGCAGAACAA+GGG 0.662709 1.2:-60248350 MS.gene055555:CDS
TGGAGGTAAGAAGAATAAAG+GGG 0.662757 1.2:-60247617 MS.gene055555:CDS
CAAATGGATAATAACAAAGG+GGG 0.663697 1.2:-60248174 MS.gene055555:CDS
ATGATGGCTATGATGCAGAA+TGG 0.663851 1.2:-60247859 MS.gene055555:CDS
CAGTTTCAAAATCCTAAAGG+AGG 0.665835 1.2:-60248096 MS.gene055555:CDS
CAGCAACAACAAATGCAGCA+AGG 0.669858 1.2:-60246938 MS.gene055555:CDS
TCTGCTCACAACCTTCACAA+TGG 0.671031 1.2:+60248765 None:intergenic
GAGGAATTTGATGAGAGTGA+TGG 0.688249 1.2:-60248015 MS.gene055555:CDS
GGGAAACATGCTGAACTATG+GGG 0.688345 1.2:-60248267 MS.gene055555:CDS
TGCCCAAATCCATTGCCTGG+AGG 0.700160 1.2:+60247907 None:intergenic
CTATGATGCAGAATGGTCGT+GGG 0.701836 1.2:-60247852 MS.gene055555:CDS
TAAAAGTGGAAATTACGGTG+AGG 0.728158 1.2:-60247680 MS.gene055555:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAACTTTTTTATGTTTATA+AGG - chr1.2:60247227-60247246 MS.gene055555:CDS 15.0%
!! AAAAAAAAGTAAGAAGAACA+AGG + chr1.2:60246814-60246833 None:intergenic 20.0%
!! AAAAAAACATGAAATTAAGG+AGG + chr1.2:60247167-60247186 None:intergenic 20.0%
!! AAAAAACATGAAATTAAGGA+GGG + chr1.2:60247166-60247185 None:intergenic 20.0%
!! AAAAATGGTAAAGGTAAAAA+CGG - chr1.2:60248180-60248199 MS.gene055555:CDS 20.0%
!! AAACAAAAACTTTACTATGT+CGG - chr1.2:60247116-60247135 MS.gene055555:CDS 20.0%
!! AGGAAAAAAACATGAAATTA+AGG + chr1.2:60247170-60247189 None:intergenic 20.0%
!! ATGGTAATAATAATGGTAAT+GGG - chr1.2:60248472-60248491 MS.gene055555:intron 20.0%
!!! ATCATTTTGTTATTATGCAT+AGG + chr1.2:60247841-60247860 None:intergenic 20.0%
! AATAGTAGCAAGAAGAAAAA+TGG - chr1.2:60248165-60248184 MS.gene055555:CDS 25.0%
! AATCTGTACTTATGTTTAAC+TGG - chr1.2:60246880-60246899 MS.gene055555:CDS 25.0%
! AATGGACATGGTAATAATAA+TGG - chr1.2:60248465-60248484 MS.gene055555:intron 25.0%
! AATTATGCAAAAGCCAAAAA+AGG - chr1.2:60247976-60247995 MS.gene055555:CDS 25.0%
! ACAAGATATGATGAAAATTC+AGG - chr1.2:60246783-60246802 MS.gene055555:CDS 25.0%
! ACATGTTAACTTTACTATGT+CGG - chr1.2:60247075-60247094 MS.gene055555:CDS 25.0%
! ATGCAAATGGATAATAACAA+AGG - chr1.2:60247541-60247560 MS.gene055555:CDS 25.0%
! ATTATTACCATGTCCATTAT+TGG + chr1.2:60248463-60248482 None:intergenic 25.0%
! CATGGTAATAATAATGGTAA+TGG - chr1.2:60248471-60248490 MS.gene055555:intron 25.0%
! GCATAATAACAAAATGATGA+TGG - chr1.2:60247843-60247862 MS.gene055555:CDS 25.0%
! TCACAAAAACATCATAAAGT+TGG + chr1.2:60247210-60247229 None:intergenic 25.0%
! TGCAAATGGATAATAACAAA+GGG - chr1.2:60247542-60247561 MS.gene055555:CDS 25.0%
!! TGGTAATAATAATGGTAATG+GGG - chr1.2:60248473-60248492 MS.gene055555:intron 25.0%
!!! ACTTATGTTTAACTGGTTTT+TGG - chr1.2:60246887-60246906 MS.gene055555:CDS 25.0%
!!! ATCCATAATATCTCCTTTTT+TGG + chr1.2:60247992-60248011 None:intergenic 25.0%
!!! GTTTTCTAGTTAAGTTTCTA+GGG - chr1.2:60248211-60248230 MS.gene055555:CDS 25.0%
!!! TGTTAATTTTGATTTGTCTG+AGG - chr1.2:60247681-60247700 MS.gene055555:CDS 25.0%
AAACTGCTTCAGAAAATTGA+AGG - chr1.2:60246984-60247003 MS.gene055555:CDS 30.0%
AAGAAAAGAAGAAAGAGACA+TGG + chr1.2:60247020-60247039 None:intergenic 30.0%
AAGGGTAAAAGTGGAAATTA+CGG - chr1.2:60248033-60248052 MS.gene055555:CDS 30.0%
AAGGTTAATATCCATTGTGA+AGG - chr1.2:60246942-60246961 MS.gene055555:CDS 30.0%
AATAAAGGGGAAAAGCAAAA+GGG - chr1.2:60248114-60248133 MS.gene055555:CDS 30.0%
AATTACGGTGAGGTAAAAAA+TGG - chr1.2:60248048-60248067 MS.gene055555:CDS 30.0%
ACATCCATCAATGAACTATA+TGG - chr1.2:60248854-60248873 MS.gene055555:intron 30.0%
AGCAAGAAGAAAAATGGTAA+AGG - chr1.2:60248171-60248190 MS.gene055555:CDS 30.0%
AGCCAAAAAAGGAGATATTA+TGG - chr1.2:60247987-60248006 MS.gene055555:CDS 30.0%
AGGTAAGAAAGGTGAAAAAT+TGG - chr1.2:60248329-60248348 MS.gene055555:CDS 30.0%
ATGGAGGTAAGAAGAATAAA+GGG - chr1.2:60248100-60248119 MS.gene055555:CDS 30.0%
ATTTGCATGTTCTTAAACTG+AGG + chr1.2:60247529-60247548 None:intergenic 30.0%
CAAATGGATAATAACAAAGG+GGG - chr1.2:60247544-60247563 MS.gene055555:CDS 30.0%
CATCATAAAGTTGGAAACTT+TGG + chr1.2:60247201-60247220 None:intergenic 30.0%
CATCCATCAATGAACTATAT+GGG - chr1.2:60248855-60248874 MS.gene055555:intron 30.0%
CTTGGAAAAAAGAGCAAAAA+GGG - chr1.2:60248234-60248253 MS.gene055555:CDS 30.0%
GCAAATGGATAATAACAAAG+GGG - chr1.2:60247543-60247562 MS.gene055555:CDS 30.0%
GTACAGATTCAACTTTAACT+AGG + chr1.2:60246869-60246888 None:intergenic 30.0%
TATCCACAACATATGATGTA+TGG - chr1.2:60248819-60248838 MS.gene055555:intron 30.0%
TCAAAAAGCTGAAAAGTTCA+GGG - chr1.2:60247431-60247450 MS.gene055555:CDS 30.0%
TCAGTTTAAGAACATGCAAA+TGG - chr1.2:60247528-60247547 MS.gene055555:CDS 30.0%
TGAATATAGATGCAGAACAA+GGG - chr1.2:60247368-60247387 MS.gene055555:CDS 30.0%
! ATATAGTTCATTGATGGATG+TGG + chr1.2:60248855-60248874 None:intergenic 30.0%
! TTCATATCTTTTCCTCCTTT+AGG + chr1.2:60247637-60247656 None:intergenic 30.0%
!! AACATGTTTCTGAGATTTGT+TGG + chr1.2:60247665-60247684 None:intergenic 30.0%
!! ACATGTTTCTGAGATTTGTT+GGG + chr1.2:60247664-60247683 None:intergenic 30.0%
!! GGTAATAATAATGGTAATGG+GGG - chr1.2:60248474-60248493 MS.gene055555:intron 30.0%
!!! GGTTTTCTAGTTAAGTTTCT+AGG - chr1.2:60248210-60248229 MS.gene055555:CDS 30.0%
!!! TAATTTTGATTTGTCTGAGG+AGG - chr1.2:60247684-60247703 MS.gene055555:CDS 30.0%
!!! TCCATTGTTTTTGTTCTTGT+CGG + chr1.2:60248271-60248290 None:intergenic 30.0%
AAAGGGAAAGAAGGTAAGAA+AGG - chr1.2:60248318-60248337 MS.gene055555:CDS 35.0%
AACAAGCCTCAGAATCAAAA+GGG - chr1.2:60247574-60247593 MS.gene055555:CDS 35.0%
AAGAACAAAAACAATGGAGG+AGG - chr1.2:60248273-60248292 MS.gene055555:CDS 35.0%
AATAGCAACAACAACAGCAA+AGG - chr1.2:60248300-60248319 MS.gene055555:CDS 35.0%
AATCAAAAGGGTCAAAAAGG+TGG - chr1.2:60247586-60247605 MS.gene055555:CDS 35.0%
AATGAATAAGATGGGTCCAA+TGG - chr1.2:60248545-60248564 MS.gene055555:intron 35.0%
AATGGAAATGGAAATGGGAA+AGG - chr1.2:60248417-60248436 MS.gene055555:intron 35.0%
AATGGTAAAGGTAAAAACGG+TGG - chr1.2:60248183-60248202 MS.gene055555:CDS 35.0%
ACAACAACAACAGCAATACA+TGG - chr1.2:60248710-60248729 MS.gene055555:intron 35.0%
ATAGCAACAACAACAGCAAA+GGG - chr1.2:60248301-60248320 MS.gene055555:CDS 35.0%
ATGAATAAGATGGGTCCAAT+GGG - chr1.2:60248546-60248565 MS.gene055555:intron 35.0%
ATGAATGGTGGCTATTATCA+AGG - chr1.2:60248642-60248661 MS.gene055555:intron 35.0%
ATGGCAGCAATGAATAAGAT+GGG - chr1.2:60248537-60248556 MS.gene055555:intron 35.0%
CAGAATCAAAAGGGTCAAAA+AGG - chr1.2:60247583-60247602 MS.gene055555:CDS 35.0%
CAGTTTCAAAATCCTAAAGG+AGG - chr1.2:60247622-60247641 MS.gene055555:CDS 35.0%
CTCAAAAAGCTGAAAAGTTC+AGG - chr1.2:60247430-60247449 MS.gene055555:CDS 35.0%
GAATAAAGGGGAAAAGCAAA+AGG - chr1.2:60248113-60248132 MS.gene055555:CDS 35.0%
GACAAGAACAAAAACAATGG+AGG - chr1.2:60248270-60248289 MS.gene055555:CDS 35.0%
GATGGAGGTAAGAAGAATAA+AGG - chr1.2:60248099-60248118 MS.gene055555:CDS 35.0%
GCACAGTTTCAAAATCCTAA+AGG - chr1.2:60247619-60247638 MS.gene055555:CDS 35.0%
GCTTGGAAAAAAGAGCAAAA+AGG - chr1.2:60248233-60248252 MS.gene055555:CDS 35.0%
GGTGAGGTAAAAAATGGTAA+TGG - chr1.2:60248054-60248073 MS.gene055555:CDS 35.0%
GTGAATATAGATGCAGAACA+AGG - chr1.2:60247367-60247386 MS.gene055555:CDS 35.0%
GTGGAAATGGAAATGGAAAT+GGG - chr1.2:60248412-60248431 MS.gene055555:intron 35.0%
TAAAAGTGGAAATTACGGTG+AGG - chr1.2:60248038-60248057 MS.gene055555:CDS 35.0%
TAACAAGCCTCAGAATCAAA+AGG - chr1.2:60247573-60247592 MS.gene055555:CDS 35.0%
TAAGGAGGGTTTAGAAACAT+GGG + chr1.2:60247152-60247171 None:intergenic 35.0%
TCACTGAAAACATGAGTGAT+TGG + chr1.2:60248915-60248934 None:intergenic 35.0%
TCTGTAGAATTGTCTTCTCA+AGG - chr1.2:60246923-60246942 MS.gene055555:CDS 35.0%
TGGAAACTTTGGATGAATGA+AGG + chr1.2:60247190-60247209 None:intergenic 35.0%
TGGAGGTAAGAAGAATAAAG+GGG - chr1.2:60248101-60248120 MS.gene055555:CDS 35.0%
TTAAGGAGGGTTTAGAAACA+TGG + chr1.2:60247153-60247172 None:intergenic 35.0%
! CTGAACTTTTCAGCTTTTTG+AGG + chr1.2:60247432-60247451 None:intergenic 35.0%
! GTGATGGTATGATGATGAAT+GGG - chr1.2:60247905-60247924 MS.gene055555:CDS 35.0%
! TTTTGATGAGGATGAAGAAG+AGG - chr1.2:60247750-60247769 MS.gene055555:CDS 35.0%
!! CTATGACGATGATTTTGATG+AGG - chr1.2:60247738-60247757 MS.gene055555:CDS 35.0%
!! GAGGTAAAAAATGGTAATGG+AGG - chr1.2:60248057-60248076 MS.gene055555:CDS 35.0%
!! GTAAAAAATGGTAATGGAGG+TGG - chr1.2:60248060-60248079 MS.gene055555:CDS 35.0%
!! TTTTGACCCTTTTGATTCTG+AGG + chr1.2:60247583-60247602 None:intergenic 35.0%
AAAAAGAGCAAAAAGGGAGG+AGG - chr1.2:60248240-60248259 MS.gene055555:CDS 40.0%
AAAAGTGGTAAGGGTGGAAA+TGG - chr1.2:60248399-60248418 MS.gene055555:intron 40.0%
AACAAAAACAATGGAGGAGG+TGG - chr1.2:60248276-60248295 MS.gene055555:CDS 40.0%
AACAACAGCAAAGGGAAAGA+AGG - chr1.2:60248309-60248328 MS.gene055555:CDS 40.0%
ACCTATGCAAATGCAGATGA+AGG - chr1.2:60248014-60248033 MS.gene055555:CDS 40.0%
AGGGAAACATGCTGAACTAT+GGG - chr1.2:60247450-60247469 MS.gene055555:CDS 40.0%
ATATGATGTATGGAGGAGGA+AGG - chr1.2:60248829-60248848 MS.gene055555:intron 40.0%
ATCACTCCTCATGGTAAAAG+TGG - chr1.2:60248384-60248403 MS.gene055555:intron 40.0%
ATGATGGCTATGATGCAGAA+TGG - chr1.2:60247859-60247878 MS.gene055555:CDS 40.0%
ATGCAGATGAAGGGTAAAAG+TGG - chr1.2:60248024-60248043 MS.gene055555:CDS 40.0%
CAACATATGATGTATGGAGG+AGG - chr1.2:60248825-60248844 MS.gene055555:intron 40.0%
CCACAACATATGATGTATGG+AGG - chr1.2:60248822-60248841 MS.gene055555:intron 40.0%
CCTATGCAAATGCAGATGAA+GGG - chr1.2:60248015-60248034 MS.gene055555:CDS 40.0%
CCTCATGGTAAAAGTGGTAA+GGG - chr1.2:60248390-60248409 MS.gene055555:intron 40.0%
CCTCCATACATCATATGTTG+TGG + chr1.2:60248825-60248844 None:intergenic 40.0%
GACTTTGATATCACTCCTCA+TGG - chr1.2:60248375-60248394 MS.gene055555:intron 40.0%
GAGGAATTTGATGAGAGTGA+TGG - chr1.2:60247703-60247722 MS.gene055555:CDS 40.0%
GAGGAGTGATATCAAAGTCT+TGG + chr1.2:60248374-60248393 None:intergenic 40.0%
GATGGCAGCAATGAATAAGA+TGG - chr1.2:60248536-60248555 MS.gene055555:intron 40.0%
GCCGACAAGAACAAAAACAA+TGG - chr1.2:60248267-60248286 MS.gene055555:CDS 40.0%
GGAAAAAAGAGCAAAAAGGG+AGG - chr1.2:60248237-60248256 MS.gene055555:CDS 40.0%
GGTCCCATATAGTTCATTGA+TGG + chr1.2:60248861-60248880 None:intergenic 40.0%
GGTGGAAATGGAAATGGAAA+TGG - chr1.2:60248411-60248430 MS.gene055555:intron 40.0%
TAATGGAGGTGGTAAGAAAG+GGG - chr1.2:60248071-60248090 MS.gene055555:CDS 40.0%
TATAGATGCAGAACAAGGGA+AGG - chr1.2:60247372-60247391 MS.gene055555:CDS 40.0%
TCCTCATGGTAAAAGTGGTA+AGG - chr1.2:60248389-60248408 MS.gene055555:intron 40.0%
TGCTGTTGCTGATAAGGATT+TGG + chr1.2:60248684-60248703 None:intergenic 40.0%
TTCATCATCATACCATCACC+AGG + chr1.2:60247904-60247923 None:intergenic 40.0%
! AACATCCCAGGTAATGGTAA+AGG - chr1.2:60247940-60247959 MS.gene055555:CDS 40.0%
! GGTGATGGTATGATGATGAA+TGG - chr1.2:60247904-60247923 MS.gene055555:CDS 40.0%
! GTAATGGAGGTGGTAAGAAA+GGG - chr1.2:60248070-60248089 MS.gene055555:CDS 40.0%
! GTTGTTGTTGTTGTGATGCA+GGG - chr1.2:60247335-60247354 MS.gene055555:CDS 40.0%
! TGTTGTTGTTGTTGTGATGC+AGG - chr1.2:60247334-60247353 MS.gene055555:CDS 40.0%
! TTGTTGTTGTTGTGATGCAG+GGG - chr1.2:60247336-60247355 MS.gene055555:CDS 40.0%
!! CTAGTTAAGTTTCTAGGGCT+TGG - chr1.2:60248216-60248235 MS.gene055555:CDS 40.0%
AAACATGCTGAACTATGGGG+TGG - chr1.2:60247454-60247473 MS.gene055555:CDS 45.0%
AAAGGGGAAAAGCAAAAGGG+TGG - chr1.2:60248117-60248136 MS.gene055555:CDS 45.0%
AATGGAGGTGGTAAGAAAGG+GGG - chr1.2:60248072-60248091 MS.gene055555:CDS 45.0%
ACCATTACCTGGGATGTTCA+TGG + chr1.2:60247938-60247957 None:intergenic 45.0%
ATTGAACCCATCTGACCCAT+TGG + chr1.2:60248564-60248583 None:intergenic 45.0%
CAGCAACAACAAATGCAGCA+AGG - chr1.2:60248780-60248799 MS.gene055555:CDS 45.0%
CAGGGAAACATGCTGAACTA+TGG - chr1.2:60247449-60247468 MS.gene055555:CDS 45.0%
CATGGTAAAAGTGGTAAGGG+TGG - chr1.2:60248393-60248412 MS.gene055555:intron 45.0%
CCCTTCATCTGCATTTGCAT+AGG + chr1.2:60248018-60248037 None:intergenic 45.0%
CTATGATGCAGAATGGTCGT+GGG - chr1.2:60247866-60247885 MS.gene055555:CDS 45.0%
CTCCTCCTTTACCATTACCT+GGG + chr1.2:60247948-60247967 None:intergenic 45.0%
GAAGAAGAGGAGTTTGGTCA+CGG - chr1.2:60247763-60247782 MS.gene055555:CDS 45.0%
GAGGATGAAGAAGAGGAGTT+TGG - chr1.2:60247757-60247776 MS.gene055555:CDS 45.0%
GAGTGATTGGATCTGCCATA+GGG + chr1.2:60248902-60248921 None:intergenic 45.0%
GATGGGTGCAATGAATCAGA+TGG - chr1.2:60248518-60248537 MS.gene055555:intron 45.0%
GGGAAACATGCTGAACTATG+GGG - chr1.2:60247451-60247470 MS.gene055555:CDS 45.0%
GGTAAAGGTAAAAACGGTGG+TGG - chr1.2:60248186-60248205 MS.gene055555:CDS 45.0%
GGTAAGGGTGGAAATGGAAA+TGG - chr1.2:60248405-60248424 MS.gene055555:intron 45.0%
TCCATTATTGGCATTGCCCT+TGG + chr1.2:60248451-60248470 None:intergenic 45.0%
TCTGATTCATTGCACCCATC+TGG + chr1.2:60248518-60248537 None:intergenic 45.0%
TCTGCTCACAACCTTCACAA+TGG + chr1.2:60246956-60246975 None:intergenic 45.0%
TGAGTGATTGGATCTGCCAT+AGG + chr1.2:60248903-60248922 None:intergenic 45.0%
TGGGTTCAATGGACCAAATG+AGG - chr1.2:60248574-60248593 MS.gene055555:intron 45.0%
TTGTGAAGGTTGTGAGCAGA+AGG - chr1.2:60246956-60246975 MS.gene055555:CDS 45.0%
! AAAGGTAAAAACGGTGGTGG+TGG - chr1.2:60248189-60248208 MS.gene055555:CDS 45.0%
! AATGGGTCAGATGGGTTCAA+TGG - chr1.2:60248563-60248582 MS.gene055555:intron 45.0%
! ATCCCAGGTAATGGTAAAGG+AGG - chr1.2:60247943-60247962 MS.gene055555:CDS 45.0%
! TGCTGTTGCTGTTGCTGATA+AGG + chr1.2:60248690-60248709 None:intergenic 45.0%
!! AATGGTAATGGGGGCCATAT+GGG - chr1.2:60248483-60248502 MS.gene055555:intron 45.0%
!! AGCTTTTTGAGGAGCTTTGC+TGG + chr1.2:60247421-60247440 None:intergenic 45.0%
!! CCCTTACCACTTTTACCATG+AGG + chr1.2:60248393-60248412 None:intergenic 45.0%
!! GGCAATGCCAATAATGGACA+TGG - chr1.2:60248453-60248472 MS.gene055555:intron 45.0%
!! GGTAATGGAGGTGGTAAGAA+AGG - chr1.2:60248069-60248088 MS.gene055555:CDS 45.0%
!! TAATGGTAATGGGGGCCATA+TGG - chr1.2:60248482-60248501 MS.gene055555:intron 45.0%
AATGGTAAAGGAGGAGGTGG+TGG - chr1.2:60247952-60247971 MS.gene055555:CDS 50.0%
ACCAATGCCATCACACCCTA+TGG - chr1.2:60248884-60248903 MS.gene055555:intron 50.0%
ATGGGTCCAATGGGTCAGAT+GGG - chr1.2:60248555-60248574 MS.gene055555:intron 50.0%
ATGGTCATGGCCATGGTCAA+GGG - chr1.2:60247788-60247807 MS.gene055555:CDS 50.0%
CCTCCTCCTTTACCATTACC+TGG + chr1.2:60247949-60247968 None:intergenic 50.0%
GCCAAGGGCAATGCCAATAA+TGG - chr1.2:60248447-60248466 MS.gene055555:intron 50.0%
GCCATGAACATCCCAGGTAA+TGG - chr1.2:60247934-60247953 MS.gene055555:CDS 50.0%
GCTATGATGCAGAATGGTCG+TGG - chr1.2:60247865-60247884 MS.gene055555:CDS 50.0%
GGAAAAGCAAAAGGGTGGTG+GGG - chr1.2:60248122-60248141 MS.gene055555:CDS 50.0%
GGGAAAAGCAAAAGGGTGGT+GGG - chr1.2:60248121-60248140 MS.gene055555:CDS 50.0%
GGTAAGAAAGGGGGTGATGA+TGG - chr1.2:60248081-60248100 MS.gene055555:CDS 50.0%
TTATTGGCATTGCCCTTGGC+AGG + chr1.2:60248447-60248466 None:intergenic 50.0%
TTTGGTCACGGACATGGTCA+TGG - chr1.2:60247775-60247794 MS.gene055555:CDS 50.0%
! ATAGGGTGTGATGGCATTGG+TGG + chr1.2:60248885-60248904 None:intergenic 50.0%
! CCAGGTAATGGTAAAGGAGG+AGG - chr1.2:60247946-60247965 MS.gene055555:CDS 50.0%
! GAAAAGCAAAAGGGTGGTGG+GGG - chr1.2:60248123-60248142 MS.gene055555:CDS 50.0%
! GGTAATGGTAAAGGAGGAGG+TGG - chr1.2:60247949-60247968 MS.gene055555:CDS 50.0%
! TGCAGAACAAGGGAAGGTGT+TGG - chr1.2:60247378-60247397 MS.gene055555:CDS 50.0%
!! AAGAAAGGGGGTGATGATGG+AGG - chr1.2:60248084-60248103 MS.gene055555:CDS 50.0%
ATGGGTCCAATGGGCCAGAT+GGG - chr1.2:60248501-60248520 MS.gene055555:intron 55.0%
ATTGCACCCATCTGGCCCAT+TGG + chr1.2:60248510-60248529 None:intergenic 55.0%
CATGGTCATGGCCATGGTCA+AGG - chr1.2:60247787-60247806 MS.gene055555:CDS 55.0%
GAGGAGTTTGGTCACGGACA+TGG - chr1.2:60247769-60247788 MS.gene055555:CDS 55.0%
GATGGGTCCAATGGGTCAGA+TGG - chr1.2:60248554-60248573 MS.gene055555:intron 55.0%
GCCATAGGGTGTGATGGCAT+TGG + chr1.2:60248888-60248907 None:intergenic 55.0%
GGATCTGCCATAGGGTGTGA+TGG + chr1.2:60248894-60248913 None:intergenic 55.0%
GGGGAAAAGCAAAAGGGTGG+TGG - chr1.2:60248120-60248139 MS.gene055555:CDS 55.0%
TATGGGTCCAATGGGCCAGA+TGG - chr1.2:60248500-60248519 MS.gene055555:intron 55.0%
TCTGGCCCATTGGACCCATA+TGG + chr1.2:60248500-60248519 None:intergenic 55.0%
TGCCCAAATCCATTGCCTGG+AGG + chr1.2:60247814-60247833 None:intergenic 55.0%
TGCTGCCCAAATCCATTGCC+TGG + chr1.2:60247817-60247836 None:intergenic 55.0%
! GGACCAAATGAGGAGCATGC+CGG - chr1.2:60248584-60248603 MS.gene055555:intron 55.0%
! GGCCTCCAGGCAATGGATTT+GGG - chr1.2:60247809-60247828 MS.gene055555:CDS 55.0%
!! AAAAGGGTGGTGGGGGAGAT+TGG - chr1.2:60248130-60248149 MS.gene055555:CDS 55.0%
!! AAAGGGTGGTGGGGGAGATT+GGG - chr1.2:60248131-60248150 MS.gene055555:CDS 55.0%
!! CAAGGGAAGGTGTTGGTGAC+AGG - chr1.2:60247385-60247404 MS.gene055555:CDS 55.0%
AATGGTCGTGGGCCACAGCT+AGG - chr1.2:60247877-60247896 MS.gene055555:CDS 60.0%
ATGGTCGTGGGCCACAGCTA+GGG - chr1.2:60247878-60247897 MS.gene055555:CDS 60.0%
CACGGACATGGTCATGGCCA+TGG - chr1.2:60247781-60247800 MS.gene055555:CDS 60.0%
CCTGCTGCCATGAACATCCC+AGG - chr1.2:60247928-60247947 MS.gene055555:CDS 60.0%
CCTGGGATGTTCATGGCAGC+AGG + chr1.2:60247931-60247950 None:intergenic 60.0%
CTGCCGGCATGCTCCTCATT+TGG + chr1.2:60248590-60248609 None:intergenic 60.0%
GGGGGCCATATGGGTCCAAT+GGG - chr1.2:60248492-60248511 MS.gene055555:intron 60.0%
TGGGGGCCATATGGGTCCAA+TGG - chr1.2:60248491-60248510 MS.gene055555:intron 60.0%
! GGGCCTCCAGGCAATGGATT+TGG - chr1.2:60247808-60247827 MS.gene055555:CDS 60.0%
!! AAGGGTGGTGGGGGAGATTG+GGG - chr1.2:60248132-60248151 MS.gene055555:CDS 60.0%
!! GGGAAAGGTGCTCCTGCCAA+GGG - chr1.2:60248432-60248451 MS.gene055555:intron 60.0%
!! GGGTGTGATGGCATTGGTGG+CGG + chr1.2:60248882-60248901 None:intergenic 60.0%
!! TGGGAAAGGTGCTCCTGCCA+AGG - chr1.2:60248431-60248450 MS.gene055555:intron 60.0%
AGTGCAAGGGTTACCGGCCG+GGG - chr1.2:60248608-60248627 MS.gene055555:intron 65.0%
ATTCATCGCCGCAGCTGCCC+CGG + chr1.2:60248628-60248647 None:intergenic 65.0%
CAGTGCAAGGGTTACCGGCC+GGG - chr1.2:60248607-60248626 MS.gene055555:intron 65.0%
CCACAGCTAGGGCCTGGTGA+TGG - chr1.2:60247889-60247908 MS.gene055555:CDS 65.0%
CCATCACCAGGCCCTAGCTG+TGG + chr1.2:60247892-60247911 None:intergenic 65.0%
GCAGCTGCGGCGATGAATGG+TGG - chr1.2:60248630-60248649 MS.gene055555:intron 65.0%
GCAGTGCAAGGGTTACCGGC+CGG - chr1.2:60248606-60248625 MS.gene055555:intron 65.0%
GCCGGCAGTGCAAGGGTTAC+CGG - chr1.2:60248602-60248621 MS.gene055555:intron 65.0%
GCCGGTAACCCTTGCACTGC+CGG + chr1.2:60248606-60248625 None:intergenic 65.0%
GGAGCATGCCGGCAGTGCAA+GGG - chr1.2:60248595-60248614 MS.gene055555:intron 65.0%
GGTCAAGGGCCTCCAGGCAA+TGG - chr1.2:60247802-60247821 MS.gene055555:CDS 65.0%
TGCCTGGAGGCCCTTGACCA+TGG + chr1.2:60247801-60247820 None:intergenic 65.0%
! AGGAGCATGCCGGCAGTGCA+AGG - chr1.2:60248594-60248613 MS.gene055555:intron 65.0%
GGCCATGGTCAAGGGCCTCC+AGG - chr1.2:60247796-60247815 MS.gene055555:CDS 70.0%
GGGGCAGCTGCGGCGATGAA+TGG - chr1.2:60248627-60248646 MS.gene055555:intron 70.0%
CGTGGGCCACAGCTAGGGCC+TGG - chr1.2:60247883-60247902 MS.gene055555:CDS 75.0%
GTTACCGGCCGGGGCAGCTG+CGG - chr1.2:60248617-60248636 MS.gene055555:intron 75.0%
! ATCGCCGCAGCTGCCCCGGC+CGG + chr1.2:60248624-60248643 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 60246775 60248965 60246775 ID=MS.gene055555
chr1.2 mRNA 60246775 60248965 60246775 ID=MS.gene055555.t1;Parent=MS.gene055555
chr1.2 exon 60248936 60248965 60248936 ID=MS.gene055555.t1.exon1;Parent=MS.gene055555.t1
chr1.2 CDS 60248936 60248965 60248936 ID=cds.MS.gene055555.t1;Parent=MS.gene055555.t1
chr1.2 exon 60248735 60248810 60248735 ID=MS.gene055555.t1.exon2;Parent=MS.gene055555.t1
chr1.2 CDS 60248735 60248810 60248735 ID=cds.MS.gene055555.t1;Parent=MS.gene055555.t1
chr1.2 exon 60246775 60248384 60246775 ID=MS.gene055555.t1.exon3;Parent=MS.gene055555.t1
chr1.2 CDS 60246775 60248384 60246775 ID=cds.MS.gene055555.t1;Parent=MS.gene055555.t1
Gene Sequence

>MS.gene055555

ATGAGTAAACAAGATATGATGAAAATTCAGGTATAACCTTGTTCTTCTTACTTTTTTTTTTTAGTCTTGTGTTCACAAGTTAATTAAAGTACCTAGTTAAAGTTGAATCTGTACTTATGTTTAACTGGTTTTTGGTTTGTTTGTTTCTTCTGTAGAATTGTCTTCTCAAGGTTAATATCCATTGTGAAGGTTGTGAGCAGAAGGTTAAGAAACTGCTTCAGAAAATTGAAGGTACATTTATACCATGTCTCTTTCTTCTTTTCTTGTTTTTCTTCTTTTCAAATTGTTAGAATTTAGTTCACATGTTAACTTTACTATGTCGGTTTCTGTCAAAAAAACAAAAACAAAAACTTTACTATGTCGGTTAACATTTTCCCATGTTTCTAAACCCTCCTTAATTTCATGTTTTTTTCCTTCATTCATCCAAAGTTTCCAACTTTATGATGTTTTTGTGAACTTTTTTATGTTTATAAGGTTTTGTGTTGTGTGCTAGTTTAGTTTTGAAGTTGATTATGTCTTAAGTTATGAAGTTAAAGATTGTTTTTTTACACGTTTATGTTGTTGTTGTTGTTGTGATGCAGGGGTGTATTCTGTGAATATAGATGCAGAACAAGGGAAGGTGTTGGTGACAGGTGATGTAGATCCAGCAAAGCTCCTCAAAAAGCTGAAAAGTTCAGGGAAACATGCTGAACTATGGGGTGGACAGAAAGCTATGATGATTAATCAAAATCAAAACTTTCAACAACAACAACCTCAGTTTAAGAACATGCAAATGGATAATAACAAAGGGGGTAAGAATAACAAGCCTCAGAATCAAAAGGGTCAAAAAGGTGGTGTTCAAGTAGCACAGTTTCAAAATCCTAAAGGAGGAAAAGATATGAAAGTGCCCAACAAATCTCAGAAACATGTTAATTTTGATTTGTCTGAGGAGGAATTTGATGAGAGTGATGGTGATTTTGATGACTATGACGATGATTTTGATGAGGATGAAGAAGAGGAGTTTGGTCACGGACATGGTCATGGCCATGGTCAAGGGCCTCCAGGCAATGGATTTGGGCAGCATCCTATGCATAATAACAAAATGATGATGGCTATGATGCAGAATGGTCGTGGGCCACAGCTAGGGCCTGGTGATGGTATGATGATGAATGGGCCTGCTGCCATGAACATCCCAGGTAATGGTAAAGGAGGAGGTGGTGGTAATTATGCAAAAGCCAAAAAAGGAGATATTATGGATCTACCTATGCAAATGCAGATGAAGGGTAAAAGTGGAAATTACGGTGAGGTAAAAAATGGTAATGGAGGTGGTAAGAAAGGGGGTGATGATGGAGGTAAGAAGAATAAAGGGGAAAAGCAAAAGGGTGGTGGGGGAGATTGGGGAGATGAAAAAAATAGTAGCAAGAAGAAAAATGGTAAAGGTAAAAACGGTGGTGGTGGTTTTCTAGTTAAGTTTCTAGGGCTTGGAAAAAAGAGCAAAAAGGGAGGAGGTGCAGCCGACAAGAACAAAAACAATGGAGGAGGTGGAAATAGCAACAACAACAGCAAAGGGAAAGAAGGTAAGAAAGGTGAAAAATTGGATAAAGTTGAATTTGATTTCCAAGACTTTGATATCACTCCTCATGGTAAAAGTGGTAAGGGTGGAAATGGAAATGGAAATGGGAAAGGTGCTCCTGCCAAGGGCAATGCCAATAATGGACATGGTAATAATAATGGTAATGGGGGCCATATGGGTCCAATGGGCCAGATGGGTGCAATGAATCAGATGGCAGCAATGAATAAGATGGGTCCAATGGGTCAGATGGGTTCAATGGACCAAATGAGGAGCATGCCGGCAGTGCAAGGGTTACCGGCCGGGGCAGCTGCGGCGATGAATGGTGGCTATTATCAAGGAATGCAGCAGATGCAACCAAATCCTTATCAGCAACAGCAACAGCAACAACAACAACAGCAATACATGGCTATGATGATGCAGCAGCAACAGCAGCAACAAATGCAGCAGCAACTGCAGCAACAACAAATGCAGCAAGGAAATATGAACAGCATGTATCCACAACATATGATGTATGGAGGAGGAAGGCCACATCCATCAATGAACTATATGGGACCGCCACCAATGCCATCACACCCTATGGCAGATCCAATCACTCATGTTTTCAGTGATGAGAACACTGAGAGCTGTAGCATCATGTAA

Protein sequence

>MS.gene055555.t1

MSKQDMMKIQNCLLKVNIHCEGCEQKVKKLLQKIEGVYSVNIDAEQGKVLVTGDVDPAKLLKKLKSSGKHAELWGGQKAMMINQNQNFQQQQPQFKNMQMDNNKGGKNNKPQNQKGQKGGVQVAQFQNPKGGKDMKVPNKSQKHVNFDLSEEEFDESDGDFDDYDDDFDEDEEEEFGHGHGHGHGQGPPGNGFGQHPMHNNKMMMAMMQNGRGPQLGPGDGMMMNGPAAMNIPGNGKGGGGGNYAKAKKGDIMDLPMQMQMKGKSGNYGEVKNGNGGGKKGGDDGGKKNKGEKQKGGGGDWGDEKNSSKKKNGKGKNGGGGFLVKFLGLGKKSKKGGGAADKNKNNGGGGNSNNNSKGKEGKKGEKLDKVEFDFQDFDITPHGKSGKGGNGNGNGKGAPAKGNANNGHGNNNGNGGHMGPMGQMGAMNQMAAMNKMGPMGQMGSMDQMRSMPAVQGLPAGAAAAMNGGYYQGMQQMQPNPYQQQQQQQQQQQYMAMMMQQQQQQQMQQQLQQQQMQQGNMNSMYPQHMMYGGGRPHPSMNYMGPPPMPSHPMADPITHVFSDENTESCSIM