Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24029.t1 | XP_013468383.1 | 94.3 | 843 | 42 | 2 | 1 | 839 | 1 | 841 | 0.00E+00 | 1533.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24029.t1 | A0A072VWH9 | 94.3 | 843 | 42 | 2 | 1 | 839 | 1 | 841 | 0.0e+00 | 1533.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056931 | MS.gene24029 | 0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene056935 | MS.gene24029 | 0.804112 | 2.53E-49 | -1.69E-46 |
| MS.gene059017 | MS.gene24029 | 0.84054 | 8.18E-58 | -1.69E-46 |
| MS.gene060559 | MS.gene24029 | 0.812632 | 3.85E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24029.t1 | MTR_1g069190 | 94.425 | 843 | 41 | 2 | 1 | 839 | 1 | 841 | 0.0 | 1528 |
| MS.gene24029.t1 | MTR_7g099410 | 56.999 | 893 | 316 | 23 | 1 | 839 | 22 | 900 | 0.0 | 824 |
| MS.gene24029.t1 | MTR_7g099410 | 56.999 | 893 | 316 | 23 | 1 | 839 | 103 | 981 | 0.0 | 824 |
| MS.gene24029.t1 | MTR_1g067570 | 28.438 | 429 | 227 | 18 | 1 | 382 | 73 | 468 | 8.19e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24029.t1 | AT4G28760 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 7.62e-117 | 377 |
| MS.gene24029.t1 | AT4G28760 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 7.62e-117 | 377 |
| MS.gene24029.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.04e-86 | 291 |
| MS.gene24029.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.04e-86 | 291 |
| MS.gene24029.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.04e-86 | 291 |
| MS.gene24029.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 9.04e-86 | 291 |
| MS.gene24029.t1 | AT2G20240 | 33.333 | 780 | 341 | 26 | 87 | 836 | 82 | 712 | 2.09e-83 | 282 |
| MS.gene24029.t1 | AT3G53540 | 34.884 | 172 | 88 | 5 | 1 | 162 | 72 | 229 | 5.11e-15 | 80.1 |
| MS.gene24029.t1 | AT3G53540 | 34.884 | 172 | 88 | 5 | 1 | 162 | 103 | 260 | 5.81e-15 | 80.1 |
Find 197 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGACATGTATGGTCATTT+AGG | 0.154963 | 1.3:-48483959 | MS.gene24029:CDS |
| CCTTATTCTACACAATCTTT+AGG | 0.208775 | 1.3:-48483113 | MS.gene24029:CDS |
| TCAAGAGGGTTCATGTTTAA+TGG | 0.218673 | 1.3:-48480895 | MS.gene24029:CDS |
| TAATGTAGTTGCTAAATTAA+TGG | 0.232485 | 1.3:-48484050 | MS.gene24029:CDS |
| TGGTGATTTGTCAATTAAAT+TGG | 0.255525 | 1.3:+48481346 | None:intergenic |
| TTGCTATTAATTCATTCATT+TGG | 0.255927 | 1.3:+48480859 | None:intergenic |
| AATGTAGTTGCTAAATTAAT+GGG | 0.258803 | 1.3:-48484049 | MS.gene24029:CDS |
| TTCCTTAGACACTAAGTTAG+AGG | 0.280175 | 1.3:-48481228 | MS.gene24029:CDS |
| CACCAATGCCAAGGCATTCT+TGG | 0.282646 | 1.3:-48483160 | MS.gene24029:CDS |
| CTTATTCTACACAATCTTTA+GGG | 0.283530 | 1.3:-48483112 | MS.gene24029:CDS |
| CAAATGGGATGAAGTTTGTT+TGG | 0.291147 | 1.3:-48480839 | MS.gene24029:CDS |
| AATTTAGCAACTACATTAGA+TGG | 0.294516 | 1.3:+48484055 | None:intergenic |
| GGAGATTCTAACACTGATAT+TGG | 0.294543 | 1.3:+48481735 | None:intergenic |
| TTCTCAGGCCTTCATGCATT+TGG | 0.296383 | 1.3:+48483285 | None:intergenic |
| CCTAAAGATTGTGTAGAATA+AGG | 0.296581 | 1.3:+48483113 | None:intergenic |
| TTCGGCAATGACAAATCTTC+TGG | 0.299484 | 1.3:-48483557 | MS.gene24029:CDS |
| TGCTATTAATTCATTCATTT+GGG | 0.311745 | 1.3:+48480860 | None:intergenic |
| AGTAAGAAATCATCATTTAA+AGG | 0.317903 | 1.3:-48482702 | MS.gene24029:CDS |
| GAATAAAACTTTACATTCTT+CGG | 0.320352 | 1.3:-48483252 | MS.gene24029:CDS |
| AACAAATGATCTTAAGGCTT+TGG | 0.324183 | 1.3:-48483402 | MS.gene24029:CDS |
| AATCTCTTTAGCCACTTCTA+TGG | 0.332582 | 1.3:+48483313 | None:intergenic |
| GTATGGGAGAACAGGAATTA+TGG | 0.340913 | 1.3:-48483476 | MS.gene24029:CDS |
| ATCCTCTAACTTAGTGTCTA+AGG | 0.342936 | 1.3:+48481226 | None:intergenic |
| CTTTGAGGCGATGGATTTGT+TGG | 0.343660 | 1.3:+48483374 | None:intergenic |
| AAGAATCTTCATCCCATGAT+AGG | 0.352056 | 1.3:+48481300 | None:intergenic |
| CTTCTCTTGGCCTCATTAAG+AGG | 0.356613 | 1.3:+48481047 | None:intergenic |
| TGACAAATCATATCATGATT+TGG | 0.357422 | 1.3:-48483192 | MS.gene24029:CDS |
| TAATCAACCTGTTCTGTGCT+TGG | 0.362030 | 1.3:+48483863 | None:intergenic |
| CTTCTAATCACCGATAAATT+CGG | 0.363877 | 1.3:+48484001 | None:intergenic |
| GTCATGACATCTAACGAAAA+AGG | 0.364074 | 1.3:-48483020 | MS.gene24029:CDS |
| ACTATCCATTAAAACCTCTA+AGG | 0.368536 | 1.3:-48481256 | MS.gene24029:CDS |
| GAGAATGGAGATTGATGCTT+TGG | 0.368829 | 1.3:-48480739 | MS.gene24029:CDS |
| ATGAATGAATTAATAGCAAA+TGG | 0.370571 | 1.3:-48480855 | MS.gene24029:CDS |
| AAGACATGTATGGTCATTTA+GGG | 0.374102 | 1.3:-48483958 | MS.gene24029:CDS |
| ATCAAACCTTTGAAGATGTT+CGG | 0.376387 | 1.3:-48483575 | MS.gene24029:CDS |
| TGTTTCGGTGGCAATAGTTT+CGG | 0.382934 | 1.3:+48482599 | None:intergenic |
| TCTAAGGAACAAGTCCTTAG+AGG | 0.385073 | 1.3:+48481242 | None:intergenic |
| AGAATGGAGATTGATGCTTT+GGG | 0.385840 | 1.3:-48480738 | MS.gene24029:CDS |
| CAAAGTTTCTATCAGAGAAA+TGG | 0.385972 | 1.3:-48483356 | MS.gene24029:CDS |
| AACATTGGAAAGTGGAAGAT+AGG | 0.388053 | 1.3:-48483925 | MS.gene24029:CDS |
| AAAAGGAGAGCCGAATTTAT+CGG | 0.390146 | 1.3:-48484011 | MS.gene24029:CDS |
| TTGGAAGTTGTTGGCTATGA+TGG | 0.400242 | 1.3:-48480972 | MS.gene24029:CDS |
| TTTCTCTGATAGAAACTTTG+AGG | 0.402390 | 1.3:+48483359 | None:intergenic |
| AAATGGGATGAAGTTTGTTT+GGG | 0.403555 | 1.3:-48480838 | MS.gene24029:CDS |
| TCATTTATGTCCCTCAATGA+TGG | 0.404068 | 1.3:+48481089 | None:intergenic |
| CATCTTCAAATTGCTTCGAT+TGG | 0.408190 | 1.3:+48483708 | None:intergenic |
| ACCAATGCCAAGGCATTCTT+GGG | 0.408772 | 1.3:-48483159 | MS.gene24029:CDS |
| TCCACTTTCCAATGTTTCAA+TGG | 0.409462 | 1.3:+48483932 | None:intergenic |
| TTGTGTTAATGCTGCACTAT+TGG | 0.418432 | 1.3:-48480991 | MS.gene24029:CDS |
| AAGCTCAAACAATGAACTCT+TGG | 0.423027 | 1.3:-48483672 | MS.gene24029:CDS |
| AGGAAAGAGGTTGTGCAGAG+TGG | 0.423258 | 1.3:-48480777 | MS.gene24029:CDS |
| TACTGATGGAACTGATGTTT+CGG | 0.425769 | 1.3:+48482584 | None:intergenic |
| GTAAGAAATCATCATTTAAA+GGG | 0.426376 | 1.3:-48482701 | MS.gene24029:CDS |
| ATGGGTCCAATGGGCTTTCA+AGG | 0.426820 | 1.3:+48481108 | None:intergenic |
| GGGTGGGGACAGTCACAGCC+TGG | 0.428898 | 1.3:-48480817 | MS.gene24029:CDS |
| ATTATGATCAAGCAGCTGTA+TGG | 0.429931 | 1.3:-48483493 | MS.gene24029:CDS |
| CCCTCAATGATGGGTCCAAT+GGG | 0.432400 | 1.3:+48481099 | None:intergenic |
| GTTCCATCAGTAAATTCATC+TGG | 0.434878 | 1.3:-48482573 | MS.gene24029:CDS |
| AGATAGGTTTATGATGGATA+AGG | 0.434947 | 1.3:-48483909 | MS.gene24029:CDS |
| GTAAATTCATCTGGAGTCCT+TGG | 0.441528 | 1.3:-48482564 | MS.gene24029:CDS |
| AAGCAGCTGTATGGGAGAAC+AGG | 0.444633 | 1.3:-48483484 | MS.gene24029:CDS |
| TCATCATCCAAGCACAGAAC+AGG | 0.447661 | 1.3:-48483870 | MS.gene24029:CDS |
| GATGAAGTTTGTTTGGGGTG+GGG | 0.447920 | 1.3:-48480832 | MS.gene24029:CDS |
| TGGGAGAACAAATGATCTTA+AGG | 0.453216 | 1.3:-48483408 | MS.gene24029:CDS |
| TCATTTGTTCTCCCAGGACT+AGG | 0.456729 | 1.3:+48483416 | None:intergenic |
| GGATGAAGTTTGTTTGGGGT+GGG | 0.457347 | 1.3:-48480833 | MS.gene24029:CDS |
| TCCTTGGAATGCACGAAAGA+TGG | 0.457734 | 1.3:-48481684 | MS.gene24029:CDS |
| AGAAAATGTTGTTAGGAAAG+AGG | 0.458595 | 1.3:-48480790 | MS.gene24029:CDS |
| TGGTTGTAGAAAATGTTGTT+AGG | 0.459275 | 1.3:-48480797 | MS.gene24029:CDS |
| TGTGCAGAGTGGGTTGGTTG+AGG | 0.460054 | 1.3:-48480766 | MS.gene24029:CDS |
| GTCAAATGAGTTCTCATCAC+TGG | 0.460647 | 1.3:+48483211 | None:intergenic |
| CAATACAGCTCATGAATCCT+TGG | 0.464219 | 1.3:-48481700 | MS.gene24029:CDS |
| GGCTTTGACTCATTCAGTCC+AGG | 0.465246 | 1.3:+48481801 | None:intergenic |
| ACCACTATTCGAGTAGATTC+CGG | 0.465298 | 1.3:+48483446 | None:intergenic |
| CAGTGGCTAGGACCCTATCA+TGG | 0.471424 | 1.3:-48481313 | MS.gene24029:CDS |
| TCATAGACTGTTGAAGATGC+AGG | 0.472164 | 1.3:+48482789 | None:intergenic |
| AACGTGTTCTCCTGAGTCCT+CGG | 0.472642 | 1.3:-48483084 | MS.gene24029:CDS |
| GATAGGTTTATGATGGATAA+GGG | 0.474776 | 1.3:-48483908 | MS.gene24029:CDS |
| GGGCTTGAAACCCTTTCAAA+AGG | 0.477681 | 1.3:-48484028 | MS.gene24029:CDS |
| GGAAAGAGGTTGTGCAGAGT+GGG | 0.478282 | 1.3:-48480776 | MS.gene24029:CDS |
| TACATTAGATGGACTGTGCT+TGG | 0.482853 | 1.3:+48484066 | None:intergenic |
| GTGTCGAGAAACTCTACTTT+GGG | 0.485906 | 1.3:-48482978 | MS.gene24029:CDS |
| TCAATTAAATTGGACTTCAT+CGG | 0.485939 | 1.3:+48481356 | None:intergenic |
| TCCGGAATCTACTCGAATAG+TGG | 0.486429 | 1.3:-48483447 | MS.gene24029:CDS |
| CAAACAATGAACTCTTGGTC+AGG | 0.487112 | 1.3:-48483667 | MS.gene24029:CDS |
| GAACAGGTTGATTACAAAGA+TGG | 0.487334 | 1.3:-48483854 | MS.gene24029:CDS |
| GAAGCAATTTGAAGATGCAT+TGG | 0.489886 | 1.3:-48483702 | MS.gene24029:CDS |
| TGTGTCGAGAAACTCTACTT+TGG | 0.491632 | 1.3:-48482979 | MS.gene24029:CDS |
| ACTGTTGAAGATGCAGGGTC+AGG | 0.493191 | 1.3:+48482795 | None:intergenic |
| TGATAGAAACTTTGAGGCGA+TGG | 0.494215 | 1.3:+48483365 | None:intergenic |
| CATTTATGTCCCTCAATGAT+GGG | 0.494789 | 1.3:+48481090 | None:intergenic |
| TTTGGAATCTCTGGCACCAA+GGG | 0.495428 | 1.3:+48481780 | None:intergenic |
| GAAAGAGTAAGAAGAAGGAT+AGG | 0.496544 | 1.3:-48483535 | MS.gene24029:CDS |
| CCCATTGGACCCATCATTGA+GGG | 0.497319 | 1.3:-48481099 | MS.gene24029:CDS |
| GGGATGAAGTTTGTTTGGGG+TGG | 0.498767 | 1.3:-48480834 | MS.gene24029:CDS |
| AGAAACGACTTTCTGAAAGA+TGG | 0.500107 | 1.3:-48483046 | MS.gene24029:CDS |
| GATTCTCCTCAAAACAATTG+TGG | 0.500159 | 1.3:-48482825 | MS.gene24029:CDS |
| TCCCAAGAATGCCTTGGCAT+TGG | 0.500183 | 1.3:+48483158 | None:intergenic |
| GTGGTATTGAAGCCTAGTCC+TGG | 0.500707 | 1.3:-48483428 | MS.gene24029:CDS |
| TTAAGATCATTTGTTCTCCC+AGG | 0.502592 | 1.3:+48483410 | None:intergenic |
| AGATGTTGATGAGGGGAAGA+TGG | 0.504294 | 1.3:-48483789 | MS.gene24029:CDS |
| TTCTACACAATCTTTAGGGC+GGG | 0.506332 | 1.3:-48483108 | MS.gene24029:CDS |
| TCCCTCAATGATGGGTCCAA+TGG | 0.507615 | 1.3:+48481098 | None:intergenic |
| GCTGTATTGTAATCTTCAAA+TGG | 0.510016 | 1.3:+48481714 | None:intergenic |
| GTTGGTTGAGGTTATGAGAA+TGG | 0.510683 | 1.3:-48480754 | MS.gene24029:CDS |
| TCAAATTCCCTCTACTCCAC+AGG | 0.512881 | 1.3:-48483621 | MS.gene24029:CDS |
| ATTCTCCTCAAAACAATTGT+GGG | 0.513750 | 1.3:-48482824 | MS.gene24029:CDS |
| ACCATCTTTCGTGCATTCCA+AGG | 0.518813 | 1.3:+48481683 | None:intergenic |
| AATAAGGACTGCCACATACA+TGG | 0.520139 | 1.3:+48483129 | None:intergenic |
| TAGGGTGGCCATTGAAACAT+TGG | 0.520221 | 1.3:-48483940 | MS.gene24029:CDS |
| GCTGCACTATTGGAAGTTGT+TGG | 0.521163 | 1.3:-48480981 | MS.gene24029:CDS |
| AGTGGAAGATAGGTTTATGA+TGG | 0.522613 | 1.3:-48483915 | MS.gene24029:CDS |
| GATTATTATCAAGACATGTA+TGG | 0.523774 | 1.3:-48483968 | MS.gene24029:CDS |
| TGAATGAATTAATAGCAAAT+GGG | 0.524504 | 1.3:-48480854 | MS.gene24029:CDS |
| TTATGATCAAGCAGCTGTAT+GGG | 0.524672 | 1.3:-48483492 | MS.gene24029:CDS |
| TGGAGGGAAGATGTTGATGA+GGG | 0.531365 | 1.3:-48483797 | MS.gene24029:CDS |
| CTCATCACTGGAATAGCCAC+TGG | 0.537890 | 1.3:+48483223 | None:intergenic |
| TGAACCCTCTTGAACAAAGA+AGG | 0.540265 | 1.3:+48480905 | None:intergenic |
| CTAGCCACTGATTCTATATG+TGG | 0.540349 | 1.3:+48481326 | None:intergenic |
| TTCTGGAAAGAGTAAGAAGA+AGG | 0.543740 | 1.3:-48483540 | MS.gene24029:CDS |
| TCTCAAAGCTTCAATGTTGG+TGG | 0.547700 | 1.3:-48482531 | MS.gene24029:CDS |
| CATTCTTCGGTATTCTCCAG+TGG | 0.549767 | 1.3:-48483239 | MS.gene24029:CDS |
| GCTTTGGGGAGGGAAATAGA+AGG | 0.550557 | 1.3:-48480723 | MS.gene24029:CDS |
| AAGGTCCTTCTTTGTTCAAG+AGG | 0.550595 | 1.3:-48480910 | MS.gene24029:CDS |
| GGAGATTGATGCTTTGGGGA+GGG | 0.550626 | 1.3:-48480733 | MS.gene24029:CDS |
| CTGTACTCAGCCTCTTAATG+AGG | 0.553577 | 1.3:-48481057 | MS.gene24029:CDS |
| GTATTCCCTTGAAAGCCCAT+TGG | 0.555850 | 1.3:-48481114 | MS.gene24029:CDS |
| TGCATCATCCTGTGGAGTAG+AGG | 0.559463 | 1.3:+48483613 | None:intergenic |
| GCATCATCCTGTGGAGTAGA+GGG | 0.559621 | 1.3:+48483614 | None:intergenic |
| ATGTTGCAGATTTCTTTACA+AGG | 0.559791 | 1.3:+48482937 | None:intergenic |
| TGGGATTGCATCCATGTATG+TGG | 0.563606 | 1.3:-48483140 | MS.gene24029:CDS |
| AGGTCCTTCTTTGTTCAAGA+GGG | 0.565387 | 1.3:-48480909 | MS.gene24029:CDS |
| GTGGAGGGAAGATGTTGATG+AGG | 0.565512 | 1.3:-48483798 | MS.gene24029:CDS |
| GAACAAAGAAGGACCTTCTG+TGG | 0.566033 | 1.3:+48480916 | None:intergenic |
| TCATTGCCGAACATCTTCAA+AGG | 0.569896 | 1.3:+48483569 | None:intergenic |
| ATGTTTAATGGACCACATTG+TGG | 0.570896 | 1.3:-48480883 | MS.gene24029:CDS |
| GCCCATTGGACCCATCATTG+AGG | 0.570908 | 1.3:-48481100 | MS.gene24029:CDS |
| TGGAGATTGATGCTTTGGGG+AGG | 0.573132 | 1.3:-48480734 | MS.gene24029:CDS |
| AGAATCTTCATCCCATGATA+GGG | 0.573830 | 1.3:+48481301 | None:intergenic |
| CTCTTAATGAGGCCAAGAGA+AGG | 0.573920 | 1.3:-48481046 | MS.gene24029:CDS |
| ATGACTCATTTCACACAAGA+TGG | 0.574580 | 1.3:-48481136 | MS.gene24029:CDS |
| GCCATTGAAACATTGGAAAG+TGG | 0.577706 | 1.3:-48483933 | MS.gene24029:CDS |
| AGAGGTTGTGCAGAGTGGGT+TGG | 0.578519 | 1.3:-48480772 | MS.gene24029:CDS |
| GGATGCAATCTCAGAGAGGA+AGG | 0.583915 | 1.3:-48483820 | MS.gene24029:CDS |
| TCTATGCACACCGAGGACTC+AGG | 0.584334 | 1.3:+48483074 | None:intergenic |
| ACTCCAGATGAATTTACTGA+TGG | 0.584574 | 1.3:+48482570 | None:intergenic |
| AGTCTCTAGTGAACCACAAG+AGG | 0.584725 | 1.3:-48482475 | MS.gene24029:CDS |
| CAGGAATTATGGATACTCTC+CGG | 0.585899 | 1.3:-48483465 | MS.gene24029:CDS |
| ATGCAATCCCAAGAATGCCT+TGG | 0.586761 | 1.3:+48483152 | None:intergenic |
| ATCTCAGAGAGGAAGGTGGA+GGG | 0.587948 | 1.3:-48483813 | MS.gene24029:CDS |
| AGTGGCTAGGACCCTATCAT+GGG | 0.590425 | 1.3:-48481312 | MS.gene24029:CDS |
| AATCTCAGAGAGGAAGGTGG+AGG | 0.592424 | 1.3:-48483814 | MS.gene24029:CDS |
| ATTTGGAATCTCTGGCACCA+AGG | 0.593391 | 1.3:+48481779 | None:intergenic |
| TGTACTTGAATCCATAGAAG+TGG | 0.594058 | 1.3:-48483324 | MS.gene24029:CDS |
| TGGTATTGAAGCCTAGTCCT+GGG | 0.594500 | 1.3:-48483427 | MS.gene24029:CDS |
| TCATGGGATGAAGATTCTTG+TGG | 0.595361 | 1.3:-48481296 | MS.gene24029:CDS |
| ACTGAATGAGTCAAAGCCCT+TGG | 0.595715 | 1.3:-48481796 | MS.gene24029:CDS |
| AGGCCAAGAGAAGGAAAATG+AGG | 0.596909 | 1.3:-48481037 | MS.gene24029:CDS |
| GCATCATCAACACCGAGGCT+AGG | 0.600474 | 1.3:+48482765 | None:intergenic |
| TTTGAGACACATTATCTCCA+AGG | 0.601654 | 1.3:+48482547 | None:intergenic |
| AACAAAGAAGGACCTTCTGT+GGG | 0.601670 | 1.3:+48480917 | None:intergenic |
| CATTCATTTGGGCCACAATG+TGG | 0.603105 | 1.3:+48480871 | None:intergenic |
| TGAGTCCTCGGTGTGCATAG+AGG | 0.603550 | 1.3:-48483072 | MS.gene24029:CDS |
| TGCACGAAAGATGGTCACAT+TGG | 0.606409 | 1.3:-48481675 | MS.gene24029:intron |
| ATGTAGTTGCTAAATTAATG+GGG | 0.607079 | 1.3:-48484048 | MS.gene24029:CDS |
| TGTGCAGTGGGACCCACAGA+AGG | 0.607104 | 1.3:-48480929 | MS.gene24029:CDS |
| TCACAAAGAACATGGCTCCA+AGG | 0.608900 | 1.3:-48482742 | MS.gene24029:CDS |
| TGTTGCAGATTTCTTTACAA+GGG | 0.609571 | 1.3:+48482938 | None:intergenic |
| TGGGTCCAATGGGCTTTCAA+GGG | 0.610068 | 1.3:+48481109 | None:intergenic |
| ATTACACTCCAAATGCATGA+AGG | 0.610756 | 1.3:-48483293 | MS.gene24029:CDS |
| ACAGTCTATGAACCTAGCCT+CGG | 0.617926 | 1.3:-48482777 | MS.gene24029:CDS |
| CATAGACTGTTGAAGATGCA+GGG | 0.622353 | 1.3:+48482790 | None:intergenic |
| TCTAACACTGATATTGGACT+AGG | 0.624156 | 1.3:+48481741 | None:intergenic |
| ATCACCACATATAGAATCAG+TGG | 0.630942 | 1.3:-48481330 | MS.gene24029:CDS |
| CACATATAGAATCAGTGGCT+AGG | 0.630949 | 1.3:-48481325 | MS.gene24029:CDS |
| AATTACTTCAAGATGTGCAG+TGG | 0.633827 | 1.3:-48480942 | MS.gene24029:CDS |
| GGAGGGAAGATGTTGATGAG+GGG | 0.637253 | 1.3:-48483796 | MS.gene24029:CDS |
| ATTACTTCAAGATGTGCAGT+GGG | 0.638167 | 1.3:-48480941 | MS.gene24029:CDS |
| ATTCTACACAATCTTTAGGG+CGG | 0.643315 | 1.3:-48483109 | MS.gene24029:CDS |
| AAGCTATGTCACCAATGCCA+AGG | 0.643366 | 1.3:-48483169 | MS.gene24029:CDS |
| TGCAATCTCAGAGAGGAAGG+TGG | 0.652012 | 1.3:-48483817 | MS.gene24029:CDS |
| GAATGGAGATTGATGCTTTG+GGG | 0.655462 | 1.3:-48480737 | MS.gene24029:CDS |
| ACATGTATGGTCATTTAGGG+TGG | 0.658765 | 1.3:-48483955 | MS.gene24029:CDS |
| ACAAAGATGGATATGAAACA+TGG | 0.662592 | 1.3:-48483841 | MS.gene24029:CDS |
| AATGGGATGAAGTTTGTTTG+GGG | 0.665298 | 1.3:-48480837 | MS.gene24029:CDS |
| GTGTCTCAAAGCTTCAATGT+TGG | 0.674820 | 1.3:-48482534 | MS.gene24029:CDS |
| ATGTGATTTGCATCATCCTG+TGG | 0.677544 | 1.3:+48483605 | None:intergenic |
| TGATGGAACTGATGTTTCGG+TGG | 0.677793 | 1.3:+48482587 | None:intergenic |
| AGTGTGATCATGTCCTCTTG+TGG | 0.683426 | 1.3:+48482462 | None:intergenic |
| GAGGGACATAAATGACAACA+AGG | 0.687568 | 1.3:-48481081 | MS.gene24029:CDS |
| AGAGGACATGATCACACTAG+AGG | 0.690396 | 1.3:-48482457 | MS.gene24029:intron |
| AAAGAAATCTGCAACATCTG+TGG | 0.695639 | 1.3:-48482931 | MS.gene24029:CDS |
| GATGATGCTCACAAAGAACA+TGG | 0.702506 | 1.3:-48482750 | MS.gene24029:CDS |
| CAAAGAACATGGCTCCAAGG+TGG | 0.704136 | 1.3:-48482739 | MS.gene24029:CDS |
| CTTTGCCTCTATGCACACCG+AGG | 0.706128 | 1.3:+48483067 | None:intergenic |
| ACATGGATGCAATCTCAGAG+AGG | 0.725851 | 1.3:-48483824 | MS.gene24029:CDS |
| TGTGAGCATCATCAACACCG+AGG | 0.796608 | 1.3:+48482760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATTCCATTAATT+AGG | + | chr1.3:48482512-48482531 | None:intergenic | 10.0% |
| !!! | ATAAAACAAGTTTTTATCAA+GGG | + | chr1.3:48482701-48482720 | None:intergenic | 15.0% |
| !!! | TATAAAACAAGTTTTTATCA+AGG | + | chr1.3:48482702-48482721 | None:intergenic | 15.0% |
| !! | AAACAAATCAAAGATTTCAT+TGG | + | chr1.3:48482922-48482941 | None:intergenic | 20.0% |
| !! | AATGTAGTTGCTAAATTAAT+GGG | - | chr1.3:48480704-48480723 | MS.gene24029:CDS | 20.0% |
| !! | AGATAAAAGATCCTAAATAA+TGG | + | chr1.3:48482432-48482451 | None:intergenic | 20.0% |
| !! | AGTAAGAAATCATCATTTAA+AGG | - | chr1.3:48482051-48482070 | MS.gene24029:intron | 20.0% |
| !! | ATGAATGAATTAATAGCAAA+TGG | - | chr1.3:48483898-48483917 | MS.gene24029:CDS | 20.0% |
| !! | GAATAAAACTTTACATTCTT+CGG | - | chr1.3:48481501-48481520 | MS.gene24029:intron | 20.0% |
| !! | GTAAGAAATCATCATTTAAA+GGG | - | chr1.3:48482052-48482071 | MS.gene24029:intron | 20.0% |
| !! | TAATGTAGTTGCTAAATTAA+TGG | - | chr1.3:48480703-48480722 | MS.gene24029:CDS | 20.0% |
| !! | TCTTCTAGTGATATTTATTT+AGG | - | chr1.3:48482389-48482408 | MS.gene24029:intron | 20.0% |
| !! | TGAATGAATTAATAGCAAAT+GGG | - | chr1.3:48483899-48483918 | MS.gene24029:CDS | 20.0% |
| !! | TGCTATTAATTCATTCATTT+GGG | + | chr1.3:48483896-48483915 | None:intergenic | 20.0% |
| !! | TTCAAACTTAACCATTATTT+AGG | - | chr1.3:48482418-48482437 | MS.gene24029:intron | 20.0% |
| !!! | ATAATGGTTAAGTTTGAAAT+AGG | + | chr1.3:48482416-48482435 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTGCTTATATTT+TGG | - | chr1.3:48482806-48482825 | MS.gene24029:CDS | 20.0% |
| !!! | CTTGATAATAATCTTTTGTT+TGG | + | chr1.3:48480778-48480797 | None:intergenic | 20.0% |
| !!! | TTGCTATTAATTCATTCATT+TGG | + | chr1.3:48483897-48483916 | None:intergenic | 20.0% |
| ! | AACTCAAGATTTCACAATTA+TGG | + | chr1.3:48482468-48482487 | None:intergenic | 25.0% |
| ! | AATTTAGCAACTACATTAGA+TGG | + | chr1.3:48480701-48480720 | None:intergenic | 25.0% |
| ! | ATGTAGTTGCTAAATTAATG+GGG | - | chr1.3:48480705-48480724 | MS.gene24029:CDS | 25.0% |
| ! | CTTATTCTACACAATCTTTA+GGG | - | chr1.3:48481641-48481660 | MS.gene24029:intron | 25.0% |
| ! | GATTATTATCAAGACATGTA+TGG | - | chr1.3:48480785-48480804 | MS.gene24029:CDS | 25.0% |
| ! | TAAAAATGTCTGACTTCTAT+CGG | - | chr1.3:48483255-48483274 | MS.gene24029:CDS | 25.0% |
| ! | TAGAAAGTAGCAAATAGTTA+AGG | + | chr1.3:48483174-48483193 | None:intergenic | 25.0% |
| ! | TATTACACCAAAAAAACTAG+AGG | + | chr1.3:48482655-48482674 | None:intergenic | 25.0% |
| ! | TCAAAGATTTCATTGGTATA+TGG | + | chr1.3:48482915-48482934 | None:intergenic | 25.0% |
| ! | TCAATTAAATTGGACTTCAT+CGG | + | chr1.3:48483400-48483419 | None:intergenic | 25.0% |
| ! | TGACAAATCATATCATGATT+TGG | - | chr1.3:48481561-48481580 | MS.gene24029:intron | 25.0% |
| ! | TTCCAAATGAAAAACAAGAT+CGG | - | chr1.3:48482989-48483008 | MS.gene24029:CDS | 25.0% |
| ! | TTTATCAAATAAGAGCTTCT+TGG | + | chr1.3:48483148-48483167 | None:intergenic | 25.0% |
| !! | GTCAGACATTTTTAATGATT+TGG | + | chr1.3:48483249-48483268 | None:intergenic | 25.0% |
| !! | TGGTGATTTGTCAATTAAAT+TGG | + | chr1.3:48483410-48483429 | None:intergenic | 25.0% |
| !!! | AGATGAACTAGATTTTTTCT+TGG | + | chr1.3:48482118-48482137 | None:intergenic | 25.0% |
| !!! | ATGCTCATTTTTTCTTTGAA+AGG | + | chr1.3:48481904-48481923 | None:intergenic | 25.0% |
| AAAAAGGTCATCAAGAACAA+AGG | - | chr1.3:48481749-48481768 | MS.gene24029:CDS | 30.0% | |
| AAAGACACTGATAAAGAAAG+AGG | + | chr1.3:48483120-48483139 | None:intergenic | 30.0% | |
| AACAAATGATCTTAAGGCTT+TGG | - | chr1.3:48481351-48481370 | MS.gene24029:CDS | 30.0% | |
| AAGACATGTATGGTCATTTA+GGG | - | chr1.3:48480795-48480814 | MS.gene24029:CDS | 30.0% | |
| ACAAAGATGGATATGAAACA+TGG | - | chr1.3:48480912-48480931 | MS.gene24029:CDS | 30.0% | |
| ACTAAAAAACCCTATGTTTG+TGG | + | chr1.3:48482878-48482897 | None:intergenic | 30.0% | |
| ACTATCCATTAAAACCTCTA+AGG | - | chr1.3:48483497-48483516 | MS.gene24029:CDS | 30.0% | |
| AGAAAATGTTGTTAGGAAAG+AGG | - | chr1.3:48483963-48483982 | MS.gene24029:CDS | 30.0% | |
| ATGTTGCAGATTTCTTTACA+AGG | + | chr1.3:48481819-48481838 | None:intergenic | 30.0% | |
| ATTCTCCTCAAAACAATTGT+GGG | - | chr1.3:48481929-48481948 | MS.gene24029:intron | 30.0% | |
| CAAAGTTTCTATCAGAGAAA+TGG | - | chr1.3:48481397-48481416 | MS.gene24029:intron | 30.0% | |
| CCTAAAGATTGTGTAGAATA+AGG | + | chr1.3:48481643-48481662 | None:intergenic | 30.0% | |
| CCTTATTCTACACAATCTTT+AGG | - | chr1.3:48481640-48481659 | MS.gene24029:intron | 30.0% | |
| CTTCTAATCACCGATAAATT+CGG | + | chr1.3:48480755-48480774 | None:intergenic | 30.0% | |
| GCTGTATTGTAATCTTCAAA+TGG | + | chr1.3:48483042-48483061 | None:intergenic | 30.0% | |
| GTCACTCGGATAATAATAAT+AGG | + | chr1.3:48483347-48483366 | None:intergenic | 30.0% | |
| TAATATATCCTTCTGTGTGT+TGG | - | chr1.3:48482524-48482543 | MS.gene24029:CDS | 30.0% | |
| TCTCTTCTCTTCCTAATTAA+TGG | - | chr1.3:48482498-48482517 | MS.gene24029:CDS | 30.0% | |
| TGGTTGTAGAAAATGTTGTT+AGG | - | chr1.3:48483956-48483975 | MS.gene24029:CDS | 30.0% | |
| TGTTGCAGATTTCTTTACAA+GGG | + | chr1.3:48481818-48481837 | None:intergenic | 30.0% | |
| TTTCTCTGATAGAAACTTTG+AGG | + | chr1.3:48481397-48481416 | None:intergenic | 30.0% | |
| ! | AAATGGGATGAAGTTTGTTT+GGG | - | chr1.3:48483915-48483934 | MS.gene24029:CDS | 30.0% |
| ! | ACAAAATGTTTGGAGTTTGA+TGG | + | chr1.3:48482833-48482852 | None:intergenic | 30.0% |
| ! | ATCAAACCTTTGAAGATGTT+CGG | - | chr1.3:48481178-48481197 | MS.gene24029:CDS | 30.0% |
| ! | CAGATTTTCTTTGTTCTTCT+TGG | + | chr1.3:48481867-48481886 | None:intergenic | 30.0% |
| ! | TAACAACATTTTCTACAACC+AGG | + | chr1.3:48483957-48483976 | None:intergenic | 30.0% |
| ! | TTTTGTATGTATAGGATCAC+TGG | - | chr1.3:48483372-48483391 | MS.gene24029:CDS | 30.0% |
| !! | AGAGGTTTTAATGGATAGTA+AGG | + | chr1.3:48483496-48483515 | None:intergenic | 30.0% |
| !! | AGATAGGTTTATGATGGATA+AGG | - | chr1.3:48480844-48480863 | MS.gene24029:CDS | 30.0% |
| !! | GATAGGTTTATGATGGATAA+GGG | - | chr1.3:48480845-48480864 | MS.gene24029:CDS | 30.0% |
| !! | TATTCTTTTGATAGCTTCTC+AGG | + | chr1.3:48481486-48481505 | None:intergenic | 30.0% |
| !! | TGTTTTTCATTTGGAATCTC+TGG | + | chr1.3:48482985-48483004 | None:intergenic | 30.0% |
| !!! | ACAATCTCCTCTAGTTTTTT+TGG | - | chr1.3:48482645-48482664 | MS.gene24029:CDS | 30.0% |
| !!! | AGTTTTTATCAAGGGCATTT+TGG | + | chr1.3:48482693-48482712 | None:intergenic | 30.0% |
| !!! | GACACTTGTTTTGTATGTAT+AGG | - | chr1.3:48483364-48483383 | MS.gene24029:CDS | 30.0% |
| AAAAGGAGAGCCGAATTTAT+CGG | - | chr1.3:48480742-48480761 | MS.gene24029:CDS | 35.0% | |
| AAAGAAATCTGCAACATCTG+TGG | - | chr1.3:48481822-48481841 | MS.gene24029:intron | 35.0% | |
| AACATTGGAAAGTGGAAGAT+AGG | - | chr1.3:48480828-48480847 | MS.gene24029:CDS | 35.0% | |
| AAGAATCTTCATCCCATGAT+AGG | + | chr1.3:48483456-48483475 | None:intergenic | 35.0% | |
| AAGCTCAAACAATGAACTCT+TGG | - | chr1.3:48481081-48481100 | MS.gene24029:CDS | 35.0% | |
| AATCTCTTTAGCCACTTCTA+TGG | + | chr1.3:48481443-48481462 | None:intergenic | 35.0% | |
| AATTACTTCAAGATGTGCAG+TGG | - | chr1.3:48483811-48483830 | MS.gene24029:CDS | 35.0% | |
| ACCAATCATACATGTGACTT+TGG | + | chr1.3:48483289-48483308 | None:intergenic | 35.0% | |
| ACTCCAGATGAATTTACTGA+TGG | + | chr1.3:48482186-48482205 | None:intergenic | 35.0% | |
| AGAATCTTCATCCCATGATA+GGG | + | chr1.3:48483455-48483474 | None:intergenic | 35.0% | |
| AGAATGGAGATTGATGCTTT+GGG | - | chr1.3:48484015-48484034 | MS.gene24029:CDS | 35.0% | |
| AGTGGAAGATAGGTTTATGA+TGG | - | chr1.3:48480838-48480857 | MS.gene24029:CDS | 35.0% | |
| ATCACCACATATAGAATCAG+TGG | - | chr1.3:48483423-48483442 | MS.gene24029:CDS | 35.0% | |
| ATCCTCTAACTTAGTGTCTA+AGG | + | chr1.3:48483530-48483549 | None:intergenic | 35.0% | |
| ATGACTCATTTCACACAAGA+TGG | - | chr1.3:48483617-48483636 | MS.gene24029:CDS | 35.0% | |
| ATTACACTCCAAATGCATGA+AGG | - | chr1.3:48481460-48481479 | MS.gene24029:intron | 35.0% | |
| ATTACTTCAAGATGTGCAGT+GGG | - | chr1.3:48483812-48483831 | MS.gene24029:CDS | 35.0% | |
| ATTATGATCAAGCAGCTGTA+TGG | - | chr1.3:48481260-48481279 | MS.gene24029:CDS | 35.0% | |
| CAAAAACTACTATCAGCATC+TGG | - | chr1.3:48483571-48483590 | MS.gene24029:CDS | 35.0% | |
| CAAATAAGAGCTTCTTGGAA+TGG | + | chr1.3:48483143-48483162 | None:intergenic | 35.0% | |
| CAAGACATGTATGGTCATTT+AGG | - | chr1.3:48480794-48480813 | MS.gene24029:CDS | 35.0% | |
| CACTGATAAAGAAAGAGGTA+AGG | + | chr1.3:48483115-48483134 | None:intergenic | 35.0% | |
| CATCTTCAAATTGCTTCGAT+TGG | + | chr1.3:48481048-48481067 | None:intergenic | 35.0% | |
| CATTTATGTCCCTCAATGAT+GGG | + | chr1.3:48483666-48483685 | None:intergenic | 35.0% | |
| GAAAGAGTAAGAAGAAGGAT+AGG | - | chr1.3:48481218-48481237 | MS.gene24029:CDS | 35.0% | |
| GAAGCAATTTGAAGATGCAT+TGG | - | chr1.3:48481051-48481070 | MS.gene24029:CDS | 35.0% | |
| GATTCTCCTCAAAACAATTG+TGG | - | chr1.3:48481928-48481947 | MS.gene24029:intron | 35.0% | |
| GGAGATTCTAACACTGATAT+TGG | + | chr1.3:48483021-48483040 | None:intergenic | 35.0% | |
| GTCATGACATCTAACGAAAA+AGG | - | chr1.3:48481733-48481752 | MS.gene24029:CDS | 35.0% | |
| GTTCCATCAGTAAATTCATC+TGG | - | chr1.3:48482180-48482199 | MS.gene24029:intron | 35.0% | |
| TACAGACTTCCACAAACATA+GGG | - | chr1.3:48482866-48482885 | MS.gene24029:CDS | 35.0% | |
| TACTGATGGAACTGATGTTT+CGG | + | chr1.3:48482172-48482191 | None:intergenic | 35.0% | |
| TCAAGAGGGTTCATGTTTAA+TGG | - | chr1.3:48483858-48483877 | MS.gene24029:CDS | 35.0% | |
| TCATTTATGTCCCTCAATGA+TGG | + | chr1.3:48483667-48483686 | None:intergenic | 35.0% | |
| TCCAAAGTCACATGTATGAT+TGG | - | chr1.3:48483285-48483304 | MS.gene24029:CDS | 35.0% | |
| TCCACTTTCCAATGTTTCAA+TGG | + | chr1.3:48480824-48480843 | None:intergenic | 35.0% | |
| TCTAACACTGATATTGGACT+AGG | + | chr1.3:48483015-48483034 | None:intergenic | 35.0% | |
| TGGGAGAACAAATGATCTTA+AGG | - | chr1.3:48481345-48481364 | MS.gene24029:CDS | 35.0% | |
| TGTACTTGAATCCATAGAAG+TGG | - | chr1.3:48481429-48481448 | MS.gene24029:intron | 35.0% | |
| TTAAGATCATTTGTTCTCCC+AGG | + | chr1.3:48481346-48481365 | None:intergenic | 35.0% | |
| TTATGATCAAGCAGCTGTAT+GGG | - | chr1.3:48481261-48481280 | MS.gene24029:CDS | 35.0% | |
| TTCAGACCACACAAAATGTT+TGG | + | chr1.3:48482843-48482862 | None:intergenic | 35.0% | |
| TTCCTTAGACACTAAGTTAG+AGG | - | chr1.3:48483525-48483544 | MS.gene24029:CDS | 35.0% | |
| TTGTGTTAATGCTGCACTAT+TGG | - | chr1.3:48483762-48483781 | MS.gene24029:CDS | 35.0% | |
| ! | AATCTTGTGCTCGATTTTAC+AGG | - | chr1.3:48484078-48484097 | MS.gene24029:CDS | 35.0% |
| ! | AATGGGATGAAGTTTGTTTG+GGG | - | chr1.3:48483916-48483935 | MS.gene24029:CDS | 35.0% |
| ! | ACTTTTCTTAGTCAGCACAT+TGG | - | chr1.3:48482614-48482633 | MS.gene24029:CDS | 35.0% |
| ! | AGAAACGACTTTCTGAAAGA+TGG | - | chr1.3:48481707-48481726 | MS.gene24029:CDS | 35.0% |
| ! | ATGTTTAATGGACCACATTG+TGG | - | chr1.3:48483870-48483889 | MS.gene24029:CDS | 35.0% |
| ! | ATTCTACACAATCTTTAGGG+CGG | - | chr1.3:48481644-48481663 | MS.gene24029:intron | 35.0% |
| ! | CAAACTCCAAACATTTTGTG+TGG | - | chr1.3:48482834-48482853 | MS.gene24029:CDS | 35.0% |
| ! | CAAATGGGATGAAGTTTGTT+TGG | - | chr1.3:48483914-48483933 | MS.gene24029:CDS | 35.0% |
| ! | CAGATGCTGATAGTAGTTTT+TGG | + | chr1.3:48483573-48483592 | None:intergenic | 35.0% |
| ! | CATACAAAACAAGTGTCACT+CGG | + | chr1.3:48483361-48483380 | None:intergenic | 35.0% |
| ! | GCTGCTTGATCATAATTTTC+TGG | + | chr1.3:48481256-48481275 | None:intergenic | 35.0% |
| ! | TGGTCACATTGGTAATACTT+AGG | - | chr1.3:48483089-48483108 | MS.gene24029:CDS | 35.0% |
| ! | TTCTGGAAAGAGTAAGAAGA+AGG | - | chr1.3:48481213-48481232 | MS.gene24029:CDS | 35.0% |
| ! | TTTGAGACACATTATCTCCA+AGG | + | chr1.3:48482209-48482228 | None:intergenic | 35.0% |
| !! | ATTTGTTTGTTTTCACAGCC+TGG | - | chr1.3:48482934-48482953 | MS.gene24029:CDS | 35.0% |
| !! | CAAGTCCTTAGAGGTTTTAA+TGG | + | chr1.3:48483505-48483524 | None:intergenic | 35.0% |
| !! | GAACAGGTTGATTACAAAGA+TGG | - | chr1.3:48480899-48480918 | MS.gene24029:CDS | 35.0% |
| !!! | GTGCTTGGAGTTTTTTTCTT+TGG | + | chr1.3:48480675-48480694 | None:intergenic | 35.0% |
| AACAAAGAAGGACCTTCTGT+GGG | + | chr1.3:48483839-48483858 | None:intergenic | 40.0% | |
| AAGGTCCTTCTTTGTTCAAG+AGG | - | chr1.3:48483843-48483862 | MS.gene24029:CDS | 40.0% | |
| AATAAGGACTGCCACATACA+TGG | + | chr1.3:48481627-48481646 | None:intergenic | 40.0% | |
| ACATGTATGGTCATTTAGGG+TGG | - | chr1.3:48480798-48480817 | MS.gene24029:CDS | 40.0% | |
| ACCACTATTCGAGTAGATTC+CGG | + | chr1.3:48481310-48481329 | None:intergenic | 40.0% | |
| ACTAGAGGAGATTGTCTACT+AGG | + | chr1.3:48482640-48482659 | None:intergenic | 40.0% | |
| AGGTCCTTCTTTGTTCAAGA+GGG | - | chr1.3:48483844-48483863 | MS.gene24029:CDS | 40.0% | |
| CAAACAATGAACTCTTGGTC+AGG | - | chr1.3:48481086-48481105 | MS.gene24029:CDS | 40.0% | |
| CAATACAGCTCATGAATCCT+TGG | - | chr1.3:48483053-48483072 | MS.gene24029:CDS | 40.0% | |
| CACATATAGAATCAGTGGCT+AGG | - | chr1.3:48483428-48483447 | MS.gene24029:CDS | 40.0% | |
| CAGGAATTATGGATACTCTC+CGG | - | chr1.3:48481288-48481307 | MS.gene24029:CDS | 40.0% | |
| CATAGACTGTTGAAGATGCA+GGG | + | chr1.3:48481966-48481985 | None:intergenic | 40.0% | |
| CTACAGACTTCCACAAACAT+AGG | - | chr1.3:48482865-48482884 | MS.gene24029:CDS | 40.0% | |
| GAATGGAGATTGATGCTTTG+GGG | - | chr1.3:48484016-48484035 | MS.gene24029:CDS | 40.0% | |
| GAGAATGGAGATTGATGCTT+TGG | - | chr1.3:48484014-48484033 | MS.gene24029:CDS | 40.0% | |
| GAGGGACATAAATGACAACA+AGG | - | chr1.3:48483672-48483691 | MS.gene24029:CDS | 40.0% | |
| GATGATGCTCACAAAGAACA+TGG | - | chr1.3:48482003-48482022 | MS.gene24029:intron | 40.0% | |
| GCCATTGAAACATTGGAAAG+TGG | - | chr1.3:48480820-48480839 | MS.gene24029:CDS | 40.0% | |
| GTATGGGAGAACAGGAATTA+TGG | - | chr1.3:48481277-48481296 | MS.gene24029:CDS | 40.0% | |
| GTCAAATGAGTTCTCATCAC+TGG | + | chr1.3:48481545-48481564 | None:intergenic | 40.0% | |
| GTGTCGAGAAACTCTACTTT+GGG | - | chr1.3:48481775-48481794 | MS.gene24029:CDS | 40.0% | |
| GTGTCTCAAAGCTTCAATGT+TGG | - | chr1.3:48482219-48482238 | MS.gene24029:intron | 40.0% | |
| GTTGGTTGAGGTTATGAGAA+TGG | - | chr1.3:48483999-48484018 | MS.gene24029:CDS | 40.0% | |
| TAATCAACCTGTTCTGTGCT+TGG | + | chr1.3:48480893-48480912 | None:intergenic | 40.0% | |
| TAGGAAGAGAAGAGACAGAT+AGG | + | chr1.3:48482493-48482512 | None:intergenic | 40.0% | |
| TATCCTTCTGTGTGTTGGAA+TGG | - | chr1.3:48482529-48482548 | MS.gene24029:CDS | 40.0% | |
| TCATAGACTGTTGAAGATGC+AGG | + | chr1.3:48481967-48481986 | None:intergenic | 40.0% | |
| TCATGGGATGAAGATTCTTG+TGG | - | chr1.3:48483457-48483476 | MS.gene24029:CDS | 40.0% | |
| TCATTGCCGAACATCTTCAA+AGG | + | chr1.3:48481187-48481206 | None:intergenic | 40.0% | |
| TCTAAGGAACAAGTCCTTAG+AGG | + | chr1.3:48483514-48483533 | None:intergenic | 40.0% | |
| TCTCAAAGCTTCAATGTTGG+TGG | - | chr1.3:48482222-48482241 | MS.gene24029:intron | 40.0% | |
| TGAACCCTCTTGAACAAAGA+AGG | + | chr1.3:48483851-48483870 | None:intergenic | 40.0% | |
| TGTGTCGAGAAACTCTACTT+TGG | - | chr1.3:48481774-48481793 | MS.gene24029:CDS | 40.0% | |
| TGTTTCGGTGGCAATAGTTT+CGG | + | chr1.3:48482157-48482176 | None:intergenic | 40.0% | |
| TTCGGCAATGACAAATCTTC+TGG | - | chr1.3:48481196-48481215 | MS.gene24029:CDS | 40.0% | |
| ! | AATTCGGCTCTCCTTTTGAA+AGG | + | chr1.3:48480739-48480758 | None:intergenic | 40.0% |
| ! | ATGTGATTTGCATCATCCTG+TGG | + | chr1.3:48481151-48481170 | None:intergenic | 40.0% |
| ! | GTAAATTCATCTGGAGTCCT+TGG | - | chr1.3:48482189-48482208 | MS.gene24029:intron | 40.0% |
| ! | TGACCTCATTTTCCTTCTCT+TGG | + | chr1.3:48483722-48483741 | None:intergenic | 40.0% |
| ! | TTGGAAGTTGTTGGCTATGA+TGG | - | chr1.3:48483781-48483800 | MS.gene24029:CDS | 40.0% |
| !! | ATTCGGCTCTCCTTTTGAAA+GGG | + | chr1.3:48480738-48480757 | None:intergenic | 40.0% |
| !! | CTAGCCACTGATTCTATATG+TGG | + | chr1.3:48483430-48483449 | None:intergenic | 40.0% |
| !! | TACATTAGATGGACTGTGCT+TGG | + | chr1.3:48480690-48480709 | None:intergenic | 40.0% |
| !! | TGATAGAAACTTTGAGGCGA+TGG | + | chr1.3:48481391-48481410 | None:intergenic | 40.0% |
| !! | TTCGACCCACAATTGTTTTG+AGG | + | chr1.3:48481937-48481956 | None:intergenic | 40.0% |
| !! | TTCTACACAATCTTTAGGGC+GGG | - | chr1.3:48481645-48481664 | MS.gene24029:intron | 40.0% |
| !!! | CTTTGACTTTTTCACCACCT+TGG | + | chr1.3:48482031-48482050 | None:intergenic | 40.0% |
| !!! | GGCCGATCTTGTTTTTCATT+TGG | + | chr1.3:48482994-48483013 | None:intergenic | 40.0% |
| AAGCTATGTCACCAATGCCA+AGG | - | chr1.3:48481584-48481603 | MS.gene24029:intron | 45.0% | |
| ACAGTCTATGAACCTAGCCT+CGG | - | chr1.3:48481976-48481995 | MS.gene24029:intron | 45.0% | |
| ACATGGATGCAATCTCAGAG+AGG | - | chr1.3:48480929-48480948 | MS.gene24029:CDS | 45.0% | |
| ACCATCTTTCGTGCATTCCA+AGG | + | chr1.3:48483073-48483092 | None:intergenic | 45.0% | |
| ACTGAATGAGTCAAAGCCCT+TGG | - | chr1.3:48482957-48482976 | MS.gene24029:CDS | 45.0% | |
| AGAGGACATGATCACACTAG+AGG | - | chr1.3:48482296-48482315 | MS.gene24029:intron | 45.0% | |
| AGGCCAAGAGAAGGAAAATG+AGG | - | chr1.3:48483716-48483735 | MS.gene24029:CDS | 45.0% | |
| AGTCTCTAGTGAACCACAAG+AGG | - | chr1.3:48482278-48482297 | MS.gene24029:intron | 45.0% | |
| AGTGTGATCATGTCCTCTTG+TGG | + | chr1.3:48482294-48482313 | None:intergenic | 45.0% | |
| ATGCAATCCCAAGAATGCCT+TGG | + | chr1.3:48481604-48481623 | None:intergenic | 45.0% | |
| CATTCATTTGGGCCACAATG+TGG | + | chr1.3:48483885-48483904 | None:intergenic | 45.0% | |
| CATTCTTCGGTATTCTCCAG+TGG | - | chr1.3:48481514-48481533 | MS.gene24029:intron | 45.0% | |
| CTCTTAATGAGGCCAAGAGA+AGG | - | chr1.3:48483707-48483726 | MS.gene24029:CDS | 45.0% | |
| CTGTACTCAGCCTCTTAATG+AGG | - | chr1.3:48483696-48483715 | MS.gene24029:CDS | 45.0% | |
| CTTCTCTTGGCCTCATTAAG+AGG | + | chr1.3:48483709-48483728 | None:intergenic | 45.0% | |
| GAACAAAGAAGGACCTTCTG+TGG | + | chr1.3:48483840-48483859 | None:intergenic | 45.0% | |
| GCTGCACTATTGGAAGTTGT+TGG | - | chr1.3:48483772-48483791 | MS.gene24029:CDS | 45.0% | |
| GGGCTTGAAACCCTTTCAAA+AGG | - | chr1.3:48480725-48480744 | MS.gene24029:CDS | 45.0% | |
| GTATTCCCTTGAAAGCCCAT+TGG | - | chr1.3:48483639-48483658 | MS.gene24029:CDS | 45.0% | |
| TAGGGTGGCCATTGAAACAT+TGG | - | chr1.3:48480813-48480832 | MS.gene24029:CDS | 45.0% | |
| TCAAATTCCCTCTACTCCAC+AGG | - | chr1.3:48481132-48481151 | MS.gene24029:CDS | 45.0% | |
| TCACAAAGAACATGGCTCCA+AGG | - | chr1.3:48482011-48482030 | MS.gene24029:intron | 45.0% | |
| TCACCATTCCAACACACAGA+AGG | + | chr1.3:48482535-48482554 | None:intergenic | 45.0% | |
| TCATCATCCAAGCACAGAAC+AGG | - | chr1.3:48480883-48480902 | MS.gene24029:CDS | 45.0% | |
| TCATTTGTTCTCCCAGGACT+AGG | + | chr1.3:48481340-48481359 | None:intergenic | 45.0% | |
| TCCGGAATCTACTCGAATAG+TGG | - | chr1.3:48481306-48481325 | MS.gene24029:CDS | 45.0% | |
| TCCTTGGAATGCACGAAAGA+TGG | - | chr1.3:48483069-48483088 | MS.gene24029:CDS | 45.0% | |
| TGATGGAACTGATGTTTCGG+TGG | + | chr1.3:48482169-48482188 | None:intergenic | 45.0% | |
| TGCACGAAAGATGGTCACAT+TGG | - | chr1.3:48483078-48483097 | MS.gene24029:CDS | 45.0% | |
| TGGGATTGCATCCATGTATG+TGG | - | chr1.3:48481613-48481632 | MS.gene24029:intron | 45.0% | |
| TTCTCAGGCCTTCATGCATT+TGG | + | chr1.3:48481471-48481490 | None:intergenic | 45.0% | |
| ! | ACCAATGCCAAGGCATTCTT+GGG | - | chr1.3:48481594-48481613 | MS.gene24029:intron | 45.0% |
| ! | AGATGTTGATGAGGGGAAGA+TGG | - | chr1.3:48480964-48480983 | MS.gene24029:CDS | 45.0% |
| ! | ATTTGGAATCTCTGGCACCA+AGG | + | chr1.3:48482977-48482996 | None:intergenic | 45.0% |
| ! | GATGAAGTTTGTTTGGGGTG+GGG | - | chr1.3:48483921-48483940 | MS.gene24029:CDS | 45.0% |
| ! | GGATGAAGTTTGTTTGGGGT+GGG | - | chr1.3:48483920-48483939 | MS.gene24029:CDS | 45.0% |
| ! | TGGAGGGAAGATGTTGATGA+GGG | - | chr1.3:48480956-48480975 | MS.gene24029:CDS | 45.0% |
| ! | TGGTATTGAAGCCTAGTCCT+GGG | - | chr1.3:48481326-48481345 | MS.gene24029:CDS | 45.0% |
| ! | TTTGGAATCTCTGGCACCAA+GGG | + | chr1.3:48482976-48482995 | None:intergenic | 45.0% |
| !! | CTTTGAGGCGATGGATTTGT+TGG | + | chr1.3:48481382-48481401 | None:intergenic | 45.0% |
| AACGTGTTCTCCTGAGTCCT+CGG | - | chr1.3:48481669-48481688 | MS.gene24029:intron | 50.0% | |
| AAGCAGCTGTATGGGAGAAC+AGG | - | chr1.3:48481269-48481288 | MS.gene24029:CDS | 50.0% | |
| AATCTCAGAGAGGAAGGTGG+AGG | - | chr1.3:48480939-48480958 | MS.gene24029:CDS | 50.0% | |
| ACTGTTGAAGATGCAGGGTC+AGG | + | chr1.3:48481961-48481980 | None:intergenic | 50.0% | |
| AGGAAAGAGGTTGTGCAGAG+TGG | - | chr1.3:48483976-48483995 | MS.gene24029:CDS | 50.0% | |
| AGTGGCTAGGACCCTATCAT+GGG | - | chr1.3:48483441-48483460 | MS.gene24029:CDS | 50.0% | |
| ATCTCAGAGAGGAAGGTGGA+GGG | - | chr1.3:48480940-48480959 | MS.gene24029:CDS | 50.0% | |
| CAAAGAACATGGCTCCAAGG+TGG | - | chr1.3:48482014-48482033 | MS.gene24029:intron | 50.0% | |
| CCCATTGGACCCATCATTGA+GGG | - | chr1.3:48483654-48483673 | MS.gene24029:CDS | 50.0% | |
| CTCATCACTGGAATAGCCAC+TGG | + | chr1.3:48481533-48481552 | None:intergenic | 50.0% | |
| GCATCATCCTGTGGAGTAGA+GGG | + | chr1.3:48481142-48481161 | None:intergenic | 50.0% | |
| GGAAAGAGGTTGTGCAGAGT+GGG | - | chr1.3:48483977-48483996 | MS.gene24029:CDS | 50.0% | |
| GGATGCAATCTCAGAGAGGA+AGG | - | chr1.3:48480933-48480952 | MS.gene24029:CDS | 50.0% | |
| GTGGAGGGAAGATGTTGATG+AGG | - | chr1.3:48480955-48480974 | MS.gene24029:CDS | 50.0% | |
| TCCCAAGAATGCCTTGGCAT+TGG | + | chr1.3:48481598-48481617 | None:intergenic | 50.0% | |
| TGCAATCTCAGAGAGGAAGG+TGG | - | chr1.3:48480936-48480955 | MS.gene24029:CDS | 50.0% | |
| TGCATCATCCTGTGGAGTAG+AGG | + | chr1.3:48481143-48481162 | None:intergenic | 50.0% | |
| TGTGAGCATCATCAACACCG+AGG | + | chr1.3:48481996-48482015 | None:intergenic | 50.0% | |
| ! | ATGGGTCCAATGGGCTTTCA+AGG | + | chr1.3:48483648-48483667 | None:intergenic | 50.0% |
| ! | CACCAATGCCAAGGCATTCT+TGG | - | chr1.3:48481593-48481612 | MS.gene24029:intron | 50.0% |
| ! | GGAGGGAAGATGTTGATGAG+GGG | - | chr1.3:48480957-48480976 | MS.gene24029:CDS | 50.0% |
| ! | GGCTTTGACTCATTCAGTCC+AGG | + | chr1.3:48482955-48482974 | None:intergenic | 50.0% |
| ! | GGGATGAAGTTTGTTTGGGG+TGG | - | chr1.3:48483919-48483938 | MS.gene24029:CDS | 50.0% |
| ! | GTGGTATTGAAGCCTAGTCC+TGG | - | chr1.3:48481325-48481344 | MS.gene24029:CDS | 50.0% |
| ! | TGGGTCCAATGGGCTTTCAA+GGG | + | chr1.3:48483647-48483666 | None:intergenic | 50.0% |
| !! | CCCTCAATGATGGGTCCAAT+GGG | + | chr1.3:48483657-48483676 | None:intergenic | 50.0% |
| !! | GCTTTGGGGAGGGAAATAGA+AGG | - | chr1.3:48484030-48484049 | MS.gene24029:CDS | 50.0% |
| !! | GGAGATTGATGCTTTGGGGA+GGG | - | chr1.3:48484020-48484039 | MS.gene24029:CDS | 50.0% |
| !! | TCCCTCAATGATGGGTCCAA+TGG | + | chr1.3:48483658-48483677 | None:intergenic | 50.0% |
| !! | TGGAGATTGATGCTTTGGGG+AGG | - | chr1.3:48484019-48484038 | MS.gene24029:CDS | 50.0% |
| AGAGGTTGTGCAGAGTGGGT+TGG | - | chr1.3:48483981-48484000 | MS.gene24029:CDS | 55.0% | |
| CAGTGGCTAGGACCCTATCA+TGG | - | chr1.3:48483440-48483459 | MS.gene24029:CDS | 55.0% | |
| CTTTGCCTCTATGCACACCG+AGG | + | chr1.3:48481689-48481708 | None:intergenic | 55.0% | |
| GCATCATCAACACCGAGGCT+AGG | + | chr1.3:48481991-48482010 | None:intergenic | 55.0% | |
| GCCCATTGGACCCATCATTG+AGG | - | chr1.3:48483653-48483672 | MS.gene24029:CDS | 55.0% | |
| TCTATGCACACCGAGGACTC+AGG | + | chr1.3:48481682-48481701 | None:intergenic | 55.0% | |
| ! | TGAGTCCTCGGTGTGCATAG+AGG | - | chr1.3:48481681-48481700 | MS.gene24029:CDS | 55.0% |
| !! | TGTGCAGAGTGGGTTGGTTG+AGG | - | chr1.3:48483987-48484006 | MS.gene24029:CDS | 55.0% |
| TGTGCAGTGGGACCCACAGA+AGG | - | chr1.3:48483824-48483843 | MS.gene24029:CDS | 60.0% | |
| GGGTGGGGACAGTCACAGCC+TGG | - | chr1.3:48483936-48483955 | MS.gene24029:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48480668 | 48484107 | 48480668 | ID=MS.gene24029 |
| chr1.3 | mRNA | 48480668 | 48484107 | 48480668 | ID=MS.gene24029.t1;Parent=MS.gene24029 |
| chr1.3 | exon | 48482458 | 48484107 | 48482458 | ID=MS.gene24029.t1.exon1;Parent=MS.gene24029.t1 |
| chr1.3 | CDS | 48482458 | 48484107 | 48482458 | ID=cds.MS.gene24029.t1;Parent=MS.gene24029.t1 |
| chr1.3 | exon | 48481676 | 48481823 | 48481676 | ID=MS.gene24029.t1.exon2;Parent=MS.gene24029.t1 |
| chr1.3 | CDS | 48481676 | 48481823 | 48481676 | ID=cds.MS.gene24029.t1;Parent=MS.gene24029.t1 |
| chr1.3 | exon | 48480668 | 48481389 | 48480668 | ID=MS.gene24029.t1.exon3;Parent=MS.gene24029.t1 |
| chr1.3 | CDS | 48480668 | 48481389 | 48480668 | ID=cds.MS.gene24029.t1;Parent=MS.gene24029.t1 |
| Gene Sequence |
| Protein sequence |
