Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24257.t1 | XP_013466128.1 | 98 | 404 | 8 | 0 | 1 | 404 | 1 | 404 | 1.50E-181 | 645.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24257.t1 | Q94B59 | 44.4 | 408 | 219 | 4 | 1 | 403 | 1 | 405 | 3.7e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24257.t1 | A0A072VEC1 | 98.0 | 404 | 8 | 0 | 1 | 404 | 1 | 404 | 1.1e-181 | 645.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96096 | MS.gene24257 | PPI |
| MS.gene27564 | MS.gene24257 | PPI |
| MS.gene016230 | MS.gene24257 | PPI |
| MS.gene24257 | MS.gene018156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24257.t1 | MTR_1g022400 | 98.020 | 404 | 8 | 0 | 1 | 404 | 1 | 404 | 0.0 | 823 |
| MS.gene24257.t1 | MTR_1g072300 | 33.989 | 356 | 228 | 5 | 48 | 399 | 30 | 382 | 2.77e-66 | 219 |
| MS.gene24257.t1 | MTR_3g099753 | 29.843 | 382 | 263 | 4 | 23 | 401 | 29 | 408 | 1.99e-54 | 188 |
| MS.gene24257.t1 | MTR_3g099753 | 30.372 | 349 | 239 | 3 | 55 | 401 | 38 | 384 | 2.29e-54 | 188 |
| MS.gene24257.t1 | MTR_8g069570 | 33.438 | 317 | 208 | 3 | 74 | 390 | 43 | 356 | 1.92e-51 | 179 |
| MS.gene24257.t1 | MTR_8g465890 | 31.016 | 374 | 237 | 8 | 18 | 387 | 4 | 360 | 1.27e-44 | 161 |
| MS.gene24257.t1 | MTR_2g090290 | 29.204 | 339 | 230 | 5 | 52 | 383 | 30 | 365 | 5.34e-44 | 159 |
| MS.gene24257.t1 | MTR_2g047855 | 30.959 | 365 | 234 | 7 | 24 | 387 | 14 | 361 | 1.98e-43 | 158 |
| MS.gene24257.t1 | MTR_1g086820 | 29.814 | 322 | 219 | 5 | 38 | 359 | 18 | 332 | 2.16e-43 | 158 |
| MS.gene24257.t1 | MTR_2g013450 | 30.405 | 296 | 204 | 2 | 74 | 368 | 48 | 342 | 1.03e-42 | 156 |
| MS.gene24257.t1 | MTR_8g059115 | 30.986 | 284 | 189 | 5 | 120 | 401 | 9 | 287 | 1.58e-34 | 132 |
| MS.gene24257.t1 | MTR_8g007375 | 27.600 | 250 | 180 | 1 | 116 | 365 | 6 | 254 | 1.48e-32 | 127 |
| MS.gene24257.t1 | MTR_8g031520 | 32.075 | 212 | 140 | 3 | 39 | 249 | 92 | 300 | 2.27e-31 | 121 |
| MS.gene24257.t1 | MTR_7g089770 | 28.041 | 296 | 199 | 7 | 73 | 362 | 175 | 462 | 2.13e-28 | 117 |
| MS.gene24257.t1 | MTR_2g096880 | 23.410 | 346 | 236 | 8 | 13 | 354 | 20 | 340 | 6.72e-23 | 100 |
| MS.gene24257.t1 | MTR_1g050750 | 27.365 | 296 | 203 | 7 | 69 | 359 | 105 | 393 | 1.14e-22 | 100 |
| MS.gene24257.t1 | MTR_2g036560 | 23.958 | 288 | 195 | 6 | 87 | 360 | 164 | 441 | 6.88e-15 | 77.0 |
| MS.gene24257.t1 | MTR_3g033040 | 23.077 | 338 | 251 | 7 | 62 | 395 | 144 | 476 | 1.05e-14 | 76.3 |
| MS.gene24257.t1 | MTR_3g033040 | 23.077 | 338 | 251 | 7 | 62 | 395 | 144 | 476 | 1.39e-14 | 75.5 |
| MS.gene24257.t1 | MTR_7g017530 | 24.898 | 245 | 181 | 3 | 157 | 401 | 286 | 527 | 6.24e-14 | 74.3 |
| MS.gene24257.t1 | MTR_5g008300 | 23.558 | 208 | 157 | 2 | 157 | 364 | 373 | 578 | 3.95e-12 | 68.9 |
| MS.gene24257.t1 | MTR_7g017570 | 31.061 | 132 | 85 | 2 | 125 | 252 | 357 | 486 | 7.28e-12 | 67.8 |
| MS.gene24257.t1 | MTR_7g017570 | 23.673 | 245 | 184 | 3 | 157 | 401 | 321 | 562 | 1.63e-11 | 66.6 |
| MS.gene24257.t1 | MTR_2g030540 | 28.395 | 162 | 111 | 3 | 156 | 317 | 396 | 552 | 6.71e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24257.t1 | AT5G09450 | 56.479 | 409 | 168 | 5 | 1 | 403 | 1 | 405 | 5.48e-169 | 479 |
| MS.gene24257.t1 | AT4G02820 | 33.058 | 363 | 231 | 7 | 45 | 401 | 48 | 404 | 7.34e-61 | 206 |
| MS.gene24257.t1 | AT5G27460 | 30.423 | 378 | 254 | 4 | 31 | 401 | 12 | 387 | 6.22e-53 | 184 |
| MS.gene24257.t1 | AT2G20710 | 30.312 | 353 | 242 | 4 | 46 | 397 | 30 | 379 | 9.22e-52 | 181 |
| MS.gene24257.t1 | AT1G60770 | 34.098 | 305 | 194 | 4 | 88 | 390 | 57 | 356 | 2.05e-49 | 174 |
| MS.gene24257.t1 | AT4G21705 | 29.834 | 362 | 230 | 4 | 8 | 368 | 1 | 339 | 3.10e-47 | 168 |
| MS.gene24257.t1 | AT1G02150 | 29.118 | 340 | 238 | 3 | 66 | 404 | 79 | 416 | 4.22e-46 | 166 |
| MS.gene24257.t1 | AT1G02370 | 28.254 | 315 | 223 | 3 | 46 | 359 | 63 | 375 | 1.17e-41 | 154 |
| MS.gene24257.t1 | AT4G01990 | 30.405 | 296 | 203 | 3 | 73 | 368 | 59 | 351 | 1.53e-41 | 153 |
| MS.gene24257.t1 | AT1G28020 | 30.341 | 323 | 215 | 6 | 73 | 390 | 55 | 372 | 1.71e-35 | 136 |
| MS.gene24257.t1 | AT1G28020 | 36.036 | 111 | 68 | 1 | 56 | 166 | 373 | 480 | 2.55e-14 | 75.1 |
| MS.gene24257.t1 | AT2G20710 | 27.526 | 287 | 204 | 4 | 112 | 397 | 1 | 284 | 8.69e-34 | 130 |
| MS.gene24257.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 66 | 369 | 140 | 441 | 3.03e-28 | 117 |
| MS.gene24257.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 66 | 369 | 140 | 441 | 3.03e-28 | 117 |
| MS.gene24257.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 66 | 369 | 140 | 441 | 3.03e-28 | 117 |
| MS.gene24257.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 66 | 369 | 140 | 441 | 3.03e-28 | 117 |
| MS.gene24257.t1 | AT1G80270 | 26.299 | 308 | 217 | 5 | 66 | 369 | 140 | 441 | 3.03e-28 | 117 |
| MS.gene24257.t1 | AT1G15480 | 26.552 | 290 | 205 | 6 | 69 | 357 | 141 | 423 | 7.20e-24 | 104 |
| MS.gene24257.t1 | AT3G15590 | 25.547 | 274 | 195 | 6 | 47 | 319 | 138 | 403 | 3.34e-23 | 102 |
| MS.gene24257.t1 | AT3G15590 | 25.547 | 274 | 195 | 6 | 47 | 319 | 138 | 403 | 3.34e-23 | 102 |
| MS.gene24257.t1 | AT3G11380 | 31.633 | 196 | 132 | 2 | 54 | 247 | 346 | 541 | 1.26e-22 | 100 |
| MS.gene24257.t1 | AT3G11380 | 26.623 | 308 | 187 | 7 | 87 | 390 | 76 | 348 | 1.34e-20 | 94.4 |
| MS.gene24257.t1 | AT1G07590 | 25.532 | 329 | 237 | 6 | 1 | 324 | 8 | 333 | 1.78e-22 | 99.8 |
| MS.gene24257.t1 | AT1G28000 | 27.111 | 225 | 153 | 4 | 58 | 275 | 37 | 257 | 7.02e-19 | 88.2 |
| MS.gene24257.t1 | AT1G43010 | 23.774 | 265 | 174 | 7 | 27 | 280 | 9 | 256 | 2.12e-15 | 75.9 |
| MS.gene24257.t1 | AT5G02860 | 23.755 | 261 | 192 | 5 | 87 | 342 | 136 | 394 | 1.55e-13 | 72.8 |
| MS.gene24257.t1 | AT5G02860 | 23.755 | 261 | 192 | 5 | 87 | 342 | 136 | 394 | 1.55e-13 | 72.8 |
| MS.gene24257.t1 | AT5G02860 | 23.755 | 261 | 192 | 5 | 87 | 342 | 136 | 394 | 1.55e-13 | 72.8 |
| MS.gene24257.t1 | AT5G02860 | 23.755 | 261 | 192 | 5 | 87 | 342 | 136 | 394 | 1.55e-13 | 72.8 |
| MS.gene24257.t1 | AT5G02860 | 23.755 | 261 | 192 | 5 | 87 | 342 | 136 | 394 | 1.55e-13 | 72.8 |
| MS.gene24257.t1 | AT3G11350 | 30.000 | 140 | 75 | 3 | 99 | 215 | 53 | 192 | 2.77e-12 | 68.2 |
| MS.gene24257.t1 | AT2G18940 | 24.815 | 270 | 179 | 9 | 87 | 342 | 137 | 396 | 2.06e-11 | 66.2 |
| MS.gene24257.t1 | AT1G74850 | 20.538 | 409 | 300 | 10 | 14 | 402 | 18 | 421 | 6.68e-11 | 64.7 |
Find 75 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGCTGGGTTGGGAAATA+AGG | 0.236043 | 1.1:+1888198 | MS.gene24257:CDS |
| AACATTAGTAGCACTTCTTT+TGG | 0.246404 | 1.1:-1886074 | None:intergenic |
| GCTTGATTGTAAAAGGATTA+TGG | 0.252184 | 1.1:+1888384 | MS.gene24257:CDS |
| AGGATAAACTTGATCAAATA+TGG | 0.253390 | 1.1:+1888218 | MS.gene24257:CDS |
| TTGATGTGCTTGATTGTAAA+AGG | 0.262901 | 1.1:+1888377 | MS.gene24257:CDS |
| ATGGATAACATATGACTTAC+TGG | 0.307051 | 1.1:+1888168 | MS.gene24257:CDS |
| AGATTAAAAGTAAAGATATC+AGG | 0.320239 | 1.1:-1887947 | None:intergenic |
| TTACTGGTCATTCTTTATGC+TGG | 0.340583 | 1.1:+1888184 | MS.gene24257:CDS |
| TTAATATTGATGAAGTTAGA+AGG | 0.362686 | 1.1:+1887996 | MS.gene24257:CDS |
| GTCATTCTTTATGCTGGGTT+GGG | 0.371727 | 1.1:+1888190 | MS.gene24257:CDS |
| TACTGGTCATTCTTTATGCT+GGG | 0.385252 | 1.1:+1888185 | MS.gene24257:CDS |
| GGTCATTCTTTATGCTGGGT+TGG | 0.385582 | 1.1:+1888189 | MS.gene24257:CDS |
| TCATGAAGAATATGAGTTAT+CGG | 0.398822 | 1.1:+1887622 | MS.gene24257:CDS |
| GAGAATCATATTCAAGTTGT+TGG | 0.401757 | 1.1:-1888440 | None:intergenic |
| CAGAGGGTGATGATGATCTA+AGG | 0.409395 | 1.1:+1886026 | MS.gene24257:CDS |
| GTAATTATTGCTGATTAAAC+TGG | 0.412423 | 1.1:-1885924 | None:intergenic |
| TCAGCGTTATAAACACGCTT+TGG | 0.414368 | 1.1:+1886174 | MS.gene24257:CDS |
| GTGATATTTCTAAAGAGCTT+AGG | 0.447878 | 1.1:+1886146 | MS.gene24257:CDS |
| TATCCTTTCATATAGTTCCT+CGG | 0.457583 | 1.1:-1887801 | None:intergenic |
| TCATCACCCTCTGCAGAGTT+CGG | 0.464784 | 1.1:-1886016 | None:intergenic |
| TGAAGACCTCAAACAACAAA+AGG | 0.466712 | 1.1:+1887919 | MS.gene24257:CDS |
| ATATCACGGAGCTCAGAAAC+AGG | 0.468593 | 1.1:-1886130 | None:intergenic |
| TCTTTACATGTCAGTTGGGC+AGG | 0.472806 | 1.1:+1887874 | MS.gene24257:CDS |
| TTGTACGTAACGGCATCAAA+GGG | 0.473448 | 1.1:-1887839 | None:intergenic |
| GCGTTATAAACACGCTTTGG+AGG | 0.476273 | 1.1:+1886177 | MS.gene24257:CDS |
| CTAAACAGAAAATGATTAGC+AGG | 0.484955 | 1.1:+1888257 | MS.gene24257:CDS |
| CAGGTGAAGTTATTGATCAA+TGG | 0.491061 | 1.1:+1888332 | MS.gene24257:CDS |
| ATGACTCTTTACATGTCAGT+TGG | 0.492710 | 1.1:+1887869 | MS.gene24257:CDS |
| ATTGTACGTAACGGCATCAA+AGG | 0.498103 | 1.1:-1887840 | None:intergenic |
| GCCCTCCTCCATTCTTATGC+AGG | 0.500197 | 1.1:+1887758 | MS.gene24257:CDS |
| CTCAGTCTCGACGAGTGAGT+TGG | 0.502370 | 1.1:-1888125 | None:intergenic |
| AAGGGATCACACAAAGTCAA+TGG | 0.508969 | 1.1:+1888149 | MS.gene24257:CDS |
| CTTGATCATGCAAAAGAAGC+AGG | 0.509186 | 1.1:+1888313 | MS.gene24257:CDS |
| TGACTCTTTACATGTCAGTT+GGG | 0.520810 | 1.1:+1887870 | MS.gene24257:CDS |
| CCGCATAGATTTGATGAACA+AGG | 0.522273 | 1.1:+1887661 | MS.gene24257:CDS |
| GTGCTGGTTCTGATGAAAGT+TGG | 0.524579 | 1.1:+1888041 | MS.gene24257:CDS |
| TCACTCGTCGAGACTGAGAA+AGG | 0.530019 | 1.1:+1888130 | MS.gene24257:CDS |
| CATTGAGAAGAACCTCAATC+CGG | 0.538432 | 1.1:+1888462 | MS.gene24257:CDS |
| CAGTGAAATATACGTTGGCC+AGG | 0.538859 | 1.1:-1888078 | None:intergenic |
| CTCCTGCATAAGAATGGAGG+AGG | 0.542649 | 1.1:-1887760 | None:intergenic |
| TTGAGGTCTTCAACAACCGA+TGG | 0.554094 | 1.1:-1887908 | None:intergenic |
| TGCTGTGACCAGTGATTATG+TGG | 0.559146 | 1.1:+1885985 | MS.gene24257:CDS |
| GAAGAAATGCGTAATGGTGC+TGG | 0.559211 | 1.1:+1888025 | MS.gene24257:CDS |
| ATTTCAGATATCAGAATGGA+TGG | 0.560128 | 1.1:+1887595 | MS.gene24257:intron |
| GATTAAAAGTAAAGATATCA+GGG | 0.567372 | 1.1:-1887946 | None:intergenic |
| CACTCGTCGAGACTGAGAAA+GGG | 0.570011 | 1.1:+1888131 | MS.gene24257:CDS |
| AGTCTCTTCCACATAATCAC+TGG | 0.571573 | 1.1:-1885993 | None:intergenic |
| CATCATTTCATTGTACGTAA+CGG | 0.576928 | 1.1:-1887849 | None:intergenic |
| GCCAACGTATATTTCACTGC+GGG | 0.584073 | 1.1:+1888082 | MS.gene24257:CDS |
| ATTCTTGAAGAAATGCGTAA+TGG | 0.587763 | 1.1:+1888019 | MS.gene24257:CDS |
| TTGCTCCTGCATAAGAATGG+AGG | 0.600601 | 1.1:-1887763 | None:intergenic |
| TAAGCTCTTTAGAAATATCA+CGG | 0.600859 | 1.1:-1886144 | None:intergenic |
| AGGCCGAGGAACTATATGAA+AGG | 0.606287 | 1.1:+1887798 | MS.gene24257:CDS |
| TGGAACTTGCACTATCAAGA+TGG | 0.610177 | 1.1:-1888105 | None:intergenic |
| TGAGGTCTTCAACAACCGAT+GGG | 0.611229 | 1.1:-1887907 | None:intergenic |
| TCGCAAGTCTTTGCAGAGGG+TGG | 0.611538 | 1.1:-1887725 | None:intergenic |
| GTCTCGCAAGTCTTTGCAGA+GGG | 0.613659 | 1.1:-1887728 | None:intergenic |
| AGAGACTCCGAACTCTGCAG+AGG | 0.614041 | 1.1:+1886009 | MS.gene24257:CDS |
| TTGGATTAGATATTTGAACC+TGG | 0.618204 | 1.1:+1888060 | MS.gene24257:CDS |
| GATGATTTCAGATATCAGAA+TGG | 0.621758 | 1.1:+1887591 | MS.gene24257:intron |
| GAGACTCCGAACTCTGCAGA+GGG | 0.624222 | 1.1:+1886010 | MS.gene24257:CDS |
| TTCTCTCTCTCATCAAACGA+AGG | 0.627248 | 1.1:+1885802 | MS.gene24257:CDS |
| AAAGACTTGCGAGACTTACA+CGG | 0.633932 | 1.1:+1887736 | MS.gene24257:CDS |
| ATCAAGCACATCAAAATCTG+TGG | 0.635067 | 1.1:-1888368 | None:intergenic |
| ATCTAAGGAGTAGAATCTTG+AGG | 0.636582 | 1.1:+1886041 | MS.gene24257:CDS |
| GCCCGCAGTGAAATATACGT+TGG | 0.643301 | 1.1:-1888083 | None:intergenic |
| ACGTAACGGCATCAAAGGGG+AGG | 0.670188 | 1.1:-1887835 | None:intergenic |
| GCAGGTAGAAAAGATCCCAT+CGG | 0.682540 | 1.1:+1887892 | MS.gene24257:CDS |
| TCCTGCATAAGAATGGAGGA+GGG | 0.685369 | 1.1:-1887759 | None:intergenic |
| AGTCTCGCAAGTCTTTGCAG+AGG | 0.690456 | 1.1:-1887729 | None:intergenic |
| GGCCAACGTATATTTCACTG+CGG | 0.706091 | 1.1:+1888081 | MS.gene24257:CDS |
| TGAGAGAGAGAAATAGAGAG+CGG | 0.708192 | 1.1:-1885791 | None:intergenic |
| CCTTGTTCATCAAATCTATG+CGG | 0.713202 | 1.1:-1887661 | None:intergenic |
| TGTACGTAACGGCATCAAAG+GGG | 0.718003 | 1.1:-1887838 | None:intergenic |
| TTGCTGAACGATGATTGTGA+TGG | 0.744152 | 1.1:-1885946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAATTAATATTGTT+CGG | + | chr1.1:1887485-1887504 | MS.gene24257:intron | 10.0% |
| !! | ATCAAAATTATCAAATATGT+CGG | - | chr1.1:1886557-1886576 | None:intergenic | 15.0% |
| !!! | ATATCTTTACTTTTAATCTA+TGG | + | chr1.1:1887951-1887970 | MS.gene24257:CDS | 15.0% |
| !!! | TCATTTTCTCAAATAATATT+TGG | - | chr1.1:1887235-1887254 | None:intergenic | 15.0% |
| !! | AGATTAAAAGTAAAGATATC+AGG | - | chr1.1:1887950-1887969 | None:intergenic | 20.0% |
| !! | ATGATTATTAATAGCTAATG+AGG | + | chr1.1:1887169-1887188 | MS.gene24257:intron | 20.0% |
| !! | GATTAAAAGTAAAGATATCA+GGG | - | chr1.1:1887949-1887968 | None:intergenic | 20.0% |
| !! | TACTAATGTTCTTCAAAAAT+GGG | + | chr1.1:1886087-1886106 | MS.gene24257:CDS | 20.0% |
| !! | TTAATATTGATGAAGTTAGA+AGG | + | chr1.1:1887996-1888015 | MS.gene24257:CDS | 20.0% |
| !! | TTCAAAATAATATTCACTTC+TGG | - | chr1.1:1887474-1887493 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTGCTCTATAAAA+CGG | + | chr1.1:1887548-1887567 | MS.gene24257:intron | 20.0% |
| ! | AATTAAGCACTTATGGAATA+TGG | - | chr1.1:1886890-1886909 | None:intergenic | 25.0% |
| ! | AGGATAAACTTGATCAAATA+TGG | + | chr1.1:1888218-1888237 | MS.gene24257:CDS | 25.0% |
| ! | ATATGAAACTAAGCTGAAAA+TGG | + | chr1.1:1886767-1886786 | MS.gene24257:intron | 25.0% |
| ! | CTACTAATGTTCTTCAAAAA+TGG | + | chr1.1:1886086-1886105 | MS.gene24257:CDS | 25.0% |
| ! | TCATGAAGAATATGAGTTAT+CGG | + | chr1.1:1887622-1887641 | MS.gene24257:CDS | 25.0% |
| ! | TGAAATAAGCTAATGAGTAA+TGG | - | chr1.1:1886311-1886330 | None:intergenic | 25.0% |
| ! | TTGTCTTGATTACTAATACA+AGG | - | chr1.1:1887132-1887151 | None:intergenic | 25.0% |
| !! | AAGGATTATGGATTCTTTTA+CGG | + | chr1.1:1888396-1888415 | MS.gene24257:CDS | 25.0% |
| !! | GTAATTATTGCTGATTAAAC+TGG | - | chr1.1:1885927-1885946 | None:intergenic | 25.0% |
| !! | TAAGCTCTTTAGAAATATCA+CGG | - | chr1.1:1886147-1886166 | None:intergenic | 25.0% |
| AGTTCTCTGATTGTGAATTA+GGG | + | chr1.1:1886990-1887009 | MS.gene24257:intron | 30.0% | |
| ATGGATAACATATGACTTAC+TGG | + | chr1.1:1888168-1888187 | MS.gene24257:CDS | 30.0% | |
| ATTCTTGAAGAAATGCGTAA+TGG | + | chr1.1:1888019-1888038 | MS.gene24257:CDS | 30.0% | |
| ATTTCAGATATCAGAATGGA+TGG | + | chr1.1:1887595-1887614 | MS.gene24257:intron | 30.0% | |
| CATCATTTCATTGTACGTAA+CGG | - | chr1.1:1887852-1887871 | None:intergenic | 30.0% | |
| CCAATCAGATTCAAATCATT+GGG | + | chr1.1:1885870-1885889 | MS.gene24257:intron | 30.0% | |
| CCAATGATTTGAATCTGATT+GGG | - | chr1.1:1885872-1885891 | None:intergenic | 30.0% | |
| CTAAACAGAAAATGATTAGC+AGG | + | chr1.1:1888257-1888276 | MS.gene24257:CDS | 30.0% | |
| CTTGTAACTGTTGCAATAAA+AGG | + | chr1.1:1887366-1887385 | MS.gene24257:intron | 30.0% | |
| GATGATTTCAGATATCAGAA+TGG | + | chr1.1:1887591-1887610 | MS.gene24257:intron | 30.0% | |
| GCTTGATTGTAAAAGGATTA+TGG | + | chr1.1:1888384-1888403 | MS.gene24257:CDS | 30.0% | |
| TAGTTCTCTGATTGTGAATT+AGG | + | chr1.1:1886989-1887008 | MS.gene24257:intron | 30.0% | |
| TATCCTTTCATATAGTTCCT+CGG | - | chr1.1:1887804-1887823 | None:intergenic | 30.0% | |
| TATTAATAGCTAATGAGGCA+CGG | + | chr1.1:1887174-1887193 | MS.gene24257:intron | 30.0% | |
| TGAGAAAATTGGAGAAAGTT+GGG | - | chr1.1:1885846-1885865 | None:intergenic | 30.0% | |
| TGTGAATTAGGGATAATTTC+TGG | + | chr1.1:1887001-1887020 | MS.gene24257:intron | 30.0% | |
| TTGAGAAAATTGGAGAAAGT+TGG | - | chr1.1:1885847-1885866 | None:intergenic | 30.0% | |
| TTGATGTGCTTGATTGTAAA+AGG | + | chr1.1:1888377-1888396 | MS.gene24257:CDS | 30.0% | |
| ! | AACATTAGTAGCACTTCTTT+TGG | - | chr1.1:1886077-1886096 | None:intergenic | 30.0% |
| ! | ACATTAGTAGCACTTCTTTT+GGG | - | chr1.1:1886076-1886095 | None:intergenic | 30.0% |
| ! | ATGGATTCTTTTACGGAAAT+TGG | + | chr1.1:1888403-1888422 | MS.gene24257:CDS | 30.0% |
| ! | CAGAGATTAATAGTTCTGTA+AGG | + | chr1.1:1887309-1887328 | MS.gene24257:intron | 30.0% |
| ! | GATTTGATGAACAAGGTTTT+TGG | + | chr1.1:1887668-1887687 | MS.gene24257:CDS | 30.0% |
| ! | GTGATATTTCTAAAGAGCTT+AGG | + | chr1.1:1886146-1886165 | MS.gene24257:CDS | 30.0% |
| ! | TTAGGGATAATTTCTGGAAA+TGG | + | chr1.1:1887007-1887026 | MS.gene24257:intron | 30.0% |
| ! | TTCAAAAATGGGTTCTTCAA+GGG | + | chr1.1:1886098-1886117 | MS.gene24257:CDS | 30.0% |
| ! | TTCTTTTACGGAAATTGGAT+TGG | + | chr1.1:1888408-1888427 | MS.gene24257:CDS | 30.0% |
| ! | TTGGATTAGATATTTGAACC+TGG | + | chr1.1:1888060-1888079 | MS.gene24257:CDS | 30.0% |
| !! | AACGAGTTCTGAAGTTTATT+TGG | + | chr1.1:1886959-1886978 | MS.gene24257:intron | 30.0% |
| !! | AAGTTGTTTTCATATCCTAG+AGG | + | chr1.1:1886742-1886761 | MS.gene24257:intron | 30.0% |
| !! | ACGAGTTCTGAAGTTTATTT+GGG | + | chr1.1:1886960-1886979 | MS.gene24257:intron | 30.0% |
| !! | AGTTGTTTTCATATCCTAGA+GGG | + | chr1.1:1886743-1886762 | MS.gene24257:intron | 30.0% |
| !! | GAGAATCATATTCAAGTTGT+TGG | - | chr1.1:1888443-1888462 | None:intergenic | 30.0% |
| !! | TGAGTAATGGACATTTCATA+AGG | - | chr1.1:1886298-1886317 | None:intergenic | 30.0% |
| AACTAAGCTGAAAATGGCTT+AGG | + | chr1.1:1886773-1886792 | MS.gene24257:intron | 35.0% | |
| ACAGCTCAATTAAGCACTTA+TGG | - | chr1.1:1886897-1886916 | None:intergenic | 35.0% | |
| ATCAAGCACATCAAAATCTG+TGG | - | chr1.1:1888371-1888390 | None:intergenic | 35.0% | |
| ATCCAAACAGAGAAAAGACA+GGG | - | chr1.1:1886208-1886227 | None:intergenic | 35.0% | |
| ATCTAAGGAGTAGAATCTTG+AGG | + | chr1.1:1886041-1886060 | MS.gene24257:CDS | 35.0% | |
| ATGACTCTTTACATGTCAGT+TGG | + | chr1.1:1887869-1887888 | MS.gene24257:CDS | 35.0% | |
| CAGGTGAAGTTATTGATCAA+TGG | + | chr1.1:1888332-1888351 | MS.gene24257:CDS | 35.0% | |
| CCCAATCAGATTCAAATCAT+TGG | + | chr1.1:1885869-1885888 | MS.gene24257:intron | 35.0% | |
| CCCAATGATTTGAATCTGAT+TGG | - | chr1.1:1885873-1885892 | None:intergenic | 35.0% | |
| CCTTGTTCATCAAATCTATG+CGG | - | chr1.1:1887664-1887683 | None:intergenic | 35.0% | |
| GAATATGGACATGTCTGTAT+TGG | - | chr1.1:1886875-1886894 | None:intergenic | 35.0% | |
| GGCTTATTTGAGCTTAACTA+CGG | - | chr1.1:1886854-1886873 | None:intergenic | 35.0% | |
| GTTAAATCTGAGTGCATGTT+AGG | + | chr1.1:1887425-1887444 | MS.gene24257:intron | 35.0% | |
| TACTGGTCATTCTTTATGCT+GGG | + | chr1.1:1888185-1888204 | MS.gene24257:CDS | 35.0% | |
| TGAAGACCTCAAACAACAAA+AGG | + | chr1.1:1887919-1887938 | MS.gene24257:CDS | 35.0% | |
| TGACTCTTTACATGTCAGTT+GGG | + | chr1.1:1887870-1887889 | MS.gene24257:CDS | 35.0% | |
| TGTTGTTCAGTGCTAACTAA+GGG | + | chr1.1:1887397-1887416 | MS.gene24257:intron | 35.0% | |
| TTACTGGTCATTCTTTATGC+TGG | + | chr1.1:1888184-1888203 | MS.gene24257:CDS | 35.0% | |
| ! | AAACTGGTGTTTCTGCAAAA+TGG | - | chr1.1:1885911-1885930 | None:intergenic | 35.0% |
| ! | CATTAGTAGCACTTCTTTTG+GGG | - | chr1.1:1886075-1886094 | None:intergenic | 35.0% |
| ! | CTTATTTCAGTTAGCTCTCT+AGG | + | chr1.1:1886322-1886341 | MS.gene24257:intron | 35.0% |
| ! | CTTCAAAAATGGGTTCTTCA+AGG | + | chr1.1:1886097-1886116 | MS.gene24257:CDS | 35.0% |
| ! | TTCACTTCTGGAAACTTCTT+TGG | - | chr1.1:1887462-1887481 | None:intergenic | 35.0% |
| ! | TTTTTGCTCCTGCATAAGAA+TGG | - | chr1.1:1887769-1887788 | None:intergenic | 35.0% |
| !! | CGAGTTCTGAAGTTTATTTG+GGG | + | chr1.1:1886961-1886980 | MS.gene24257:intron | 35.0% |
| !! | TGATTGGGTGTTGAGAAAAT+TGG | - | chr1.1:1885857-1885876 | None:intergenic | 35.0% |
| AAACTTCTTTGGCGTTGCAA+TGG | - | chr1.1:1887451-1887470 | None:intergenic | 40.0% | |
| AAAGACTTGCGAGACTTACA+CGG | + | chr1.1:1887736-1887755 | MS.gene24257:CDS | 40.0% | |
| AAGGGATCACACAAAGTCAA+TGG | + | chr1.1:1888149-1888168 | MS.gene24257:CDS | 40.0% | |
| AATCGTTGTCTTGTCAGTGT+TGG | + | chr1.1:1887277-1887296 | MS.gene24257:intron | 40.0% | |
| ACACTGACACATCTAATCGA+AGG | + | chr1.1:1886502-1886521 | MS.gene24257:intron | 40.0% | |
| AGGAGCAAAAATGACCGAAA+AGG | + | chr1.1:1887778-1887797 | MS.gene24257:CDS | 40.0% | |
| AGTCTCTTCCACATAATCAC+TGG | - | chr1.1:1885996-1886015 | None:intergenic | 40.0% | |
| AGTTTAGTGAGACTGTTTGC+AGG | - | chr1.1:1886827-1886846 | None:intergenic | 40.0% | |
| ATTGTACGTAACGGCATCAA+AGG | - | chr1.1:1887843-1887862 | None:intergenic | 40.0% | |
| CATAAGCACTTATGCTCGTT+TGG | + | chr1.1:1886434-1886453 | MS.gene24257:intron | 40.0% | |
| CATCCAAACAGAGAAAAGAC+AGG | - | chr1.1:1886209-1886228 | None:intergenic | 40.0% | |
| CATTGAGAAGAACCTCAATC+CGG | + | chr1.1:1888462-1888481 | MS.gene24257:CDS | 40.0% | |
| CCGCATAGATTTGATGAACA+AGG | + | chr1.1:1887661-1887680 | MS.gene24257:CDS | 40.0% | |
| CTTAGTTTCATATGCCCTCT+AGG | - | chr1.1:1886760-1886779 | None:intergenic | 40.0% | |
| CTTGATCATGCAAAAGAAGC+AGG | + | chr1.1:1888313-1888332 | MS.gene24257:CDS | 40.0% | |
| GAATGTTTGAGAGAGCTTGT+AGG | + | chr1.1:1886267-1886286 | MS.gene24257:intron | 40.0% | |
| GCTTCATAGTATATAAGCGC+TGG | + | chr1.1:1886659-1886678 | MS.gene24257:intron | 40.0% | |
| GTCATTCTTTATGCTGGGTT+GGG | + | chr1.1:1888190-1888209 | MS.gene24257:CDS | 40.0% | |
| TCAGCGTTATAAACACGCTT+TGG | + | chr1.1:1886174-1886193 | MS.gene24257:CDS | 40.0% | |
| TGAGAGAGAGAAATAGAGAG+CGG | - | chr1.1:1885794-1885813 | None:intergenic | 40.0% | |
| TGGAACTTGCACTATCAAGA+TGG | - | chr1.1:1888108-1888127 | None:intergenic | 40.0% | |
| TGTTGCAATAAAAGGTCCTC+TGG | + | chr1.1:1887374-1887393 | MS.gene24257:intron | 40.0% | |
| TTCTCTCTCTCATCAAACGA+AGG | + | chr1.1:1885802-1885821 | MS.gene24257:CDS | 40.0% | |
| TTGCTGAACGATGATTGTGA+TGG | - | chr1.1:1885949-1885968 | None:intergenic | 40.0% | |
| TTGTACGTAACGGCATCAAA+GGG | - | chr1.1:1887842-1887861 | None:intergenic | 40.0% | |
| ! | ATATAGTTCCTCGGCCTTTT+CGG | - | chr1.1:1887795-1887814 | None:intergenic | 40.0% |
| ! | GTGTTGTTCAGTGCTAACTA+AGG | + | chr1.1:1887396-1887415 | MS.gene24257:intron | 40.0% |
| ! | TTATGCTGGGTTGGGAAATA+AGG | + | chr1.1:1888198-1888217 | MS.gene24257:CDS | 40.0% |
| ! | TTCCCTGTCTTTTCTCTGTT+TGG | + | chr1.1:1886203-1886222 | MS.gene24257:intron | 40.0% |
| !!! | GGACAACCTTTTGTTGTTTG+AGG | - | chr1.1:1887928-1887947 | None:intergenic | 40.0% |
| AAAAATGACCGAAAAGGCCG+AGG | + | chr1.1:1887784-1887803 | MS.gene24257:CDS | 45.0% | |
| AGGCCGAGGAACTATATGAA+AGG | + | chr1.1:1887798-1887817 | MS.gene24257:CDS | 45.0% | |
| ATATCACGGAGCTCAGAAAC+AGG | - | chr1.1:1886133-1886152 | None:intergenic | 45.0% | |
| CAGTGAAATATACGTTGGCC+AGG | - | chr1.1:1888081-1888100 | None:intergenic | 45.0% | |
| GAAGAAATGCGTAATGGTGC+TGG | + | chr1.1:1888025-1888044 | MS.gene24257:CDS | 45.0% | |
| GCAGGTAGAAAAGATCCCAT+CGG | + | chr1.1:1887892-1887911 | MS.gene24257:CDS | 45.0% | |
| GCCAACGTATATTTCACTGC+GGG | + | chr1.1:1888082-1888101 | MS.gene24257:CDS | 45.0% | |
| GCGTTATAAACACGCTTTGG+AGG | + | chr1.1:1886177-1886196 | MS.gene24257:CDS | 45.0% | |
| GGCCAACGTATATTTCACTG+CGG | + | chr1.1:1888081-1888100 | MS.gene24257:CDS | 45.0% | |
| GGTCATTCTTTATGCTGGGT+TGG | + | chr1.1:1888189-1888208 | MS.gene24257:CDS | 45.0% | |
| TCCTGCATAAGAATGGAGGA+GGG | - | chr1.1:1887762-1887781 | None:intergenic | 45.0% | |
| TCTTTACATGTCAGTTGGGC+AGG | + | chr1.1:1887874-1887893 | MS.gene24257:CDS | 45.0% | |
| TGAGGTCTTCAACAACCGAT+GGG | - | chr1.1:1887910-1887929 | None:intergenic | 45.0% | |
| TGCTGTGACCAGTGATTATG+TGG | + | chr1.1:1885985-1886004 | MS.gene24257:CDS | 45.0% | |
| TGTACGTAACGGCATCAAAG+GGG | - | chr1.1:1887841-1887860 | None:intergenic | 45.0% | |
| TTGAGGTCTTCAACAACCGA+TGG | - | chr1.1:1887911-1887930 | None:intergenic | 45.0% | |
| TTGCTCCTGCATAAGAATGG+AGG | - | chr1.1:1887766-1887785 | None:intergenic | 45.0% | |
| ! | CAGAGGGTGATGATGATCTA+AGG | + | chr1.1:1886026-1886045 | MS.gene24257:CDS | 45.0% |
| ! | TTAGCACTGAACAACACCAG+AGG | - | chr1.1:1887393-1887412 | None:intergenic | 45.0% |
| !! | GTGCTGGTTCTGATGAAAGT+TGG | + | chr1.1:1888041-1888060 | MS.gene24257:CDS | 45.0% |
| AGTCTCGCAAGTCTTTGCAG+AGG | - | chr1.1:1887732-1887751 | None:intergenic | 50.0% | |
| CAACGTTTCAGTGTCGTGTC+TGG | - | chr1.1:1887209-1887228 | None:intergenic | 50.0% | |
| CACTCGTCGAGACTGAGAAA+GGG | + | chr1.1:1888131-1888150 | MS.gene24257:CDS | 50.0% | |
| CTCCTGCATAAGAATGGAGG+AGG | - | chr1.1:1887763-1887782 | None:intergenic | 50.0% | |
| GCACAGACAGTCAGACACAT+TGG | - | chr1.1:1886641-1886660 | None:intergenic | 50.0% | |
| GCCCGCAGTGAAATATACGT+TGG | - | chr1.1:1888086-1888105 | None:intergenic | 50.0% | |
| GTCTCGCAAGTCTTTGCAGA+GGG | - | chr1.1:1887731-1887750 | None:intergenic | 50.0% | |
| TCACTCGTCGAGACTGAGAA+AGG | + | chr1.1:1888130-1888149 | MS.gene24257:CDS | 50.0% | |
| TCATCACCCTCTGCAGAGTT+CGG | - | chr1.1:1886019-1886038 | None:intergenic | 50.0% | |
| TCGTGACGATGTCAGACACT+GGG | - | chr1.1:1886532-1886551 | None:intergenic | 50.0% | |
| TTCGTGACGATGTCAGACAC+TGG | - | chr1.1:1886533-1886552 | None:intergenic | 50.0% | |
| ACGTAACGGCATCAAAGGGG+AGG | - | chr1.1:1887838-1887857 | None:intergenic | 55.0% | |
| AGAGACTCCGAACTCTGCAG+AGG | + | chr1.1:1886009-1886028 | MS.gene24257:CDS | 55.0% | |
| CTCAGTCTCGACGAGTGAGT+TGG | - | chr1.1:1888128-1888147 | None:intergenic | 55.0% | |
| GAGACTCCGAACTCTGCAGA+GGG | + | chr1.1:1886010-1886029 | MS.gene24257:CDS | 55.0% | |
| GCCCTCCTCCATTCTTATGC+AGG | + | chr1.1:1887758-1887777 | MS.gene24257:CDS | 55.0% | |
| TCGCAAGTCTTTGCAGAGGG+TGG | - | chr1.1:1887728-1887747 | None:intergenic | 55.0% | |
| TGGACACACGACACGAACGT+TGG | - | chr1.1:1886621-1886640 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1885783 | 1888495 | 1885783 | ID=MS.gene24257 |
| chr1.1 | mRNA | 1885783 | 1888495 | 1885783 | ID=MS.gene24257.t1;Parent=MS.gene24257 |
| chr1.1 | exon | 1885783 | 1885823 | 1885783 | ID=MS.gene24257.t1.exon1;Parent=MS.gene24257.t1 |
| chr1.1 | CDS | 1885783 | 1885823 | 1885783 | ID=cds.MS.gene24257.t1;Parent=MS.gene24257.t1 |
| chr1.1 | exon | 1885919 | 1886198 | 1885919 | ID=MS.gene24257.t1.exon2;Parent=MS.gene24257.t1 |
| chr1.1 | CDS | 1885919 | 1886198 | 1885919 | ID=cds.MS.gene24257.t1;Parent=MS.gene24257.t1 |
| chr1.1 | exon | 1887602 | 1888495 | 1887602 | ID=MS.gene24257.t1.exon3;Parent=MS.gene24257.t1 |
| chr1.1 | CDS | 1887602 | 1888495 | 1887602 | ID=cds.MS.gene24257.t1;Parent=MS.gene24257.t1 |
| Gene Sequence |
| Protein sequence |
