AlfalfaGEDB | MS.gene96096

M. sativa cultivar XinJiangDaYe / MS.gene96096

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96096.t1	GAU13162.1	75.7	317	31	1	1	317	59	329	9.60E-62	247.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96096.t1	Q9LPC4	63.9	108	39	0	1	108	94	201	5.0e-35	149.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96096.t1	A0A2Z6M2Z5	75.7	317	31	1	1	317	59	329	6.9e-62	247.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049151	MS.gene96096	0.817206	3.72E-52	-1.69E-46
MS.gene049260	MS.gene96096	0.80205	6.74E-49	-1.69E-46
MS.gene049351	MS.gene96096	0.814505	1.49E-51	-1.69E-46
MS.gene049599	MS.gene96096	-0.834681	2.60E-56	-1.69E-46
MS.gene049662	MS.gene96096	0.80703	6.17E-50	-1.69E-46
MS.gene049758	MS.gene96096	0.911368	6.58E-83	-1.69E-46
MS.gene049915	MS.gene96096	0.805043	1.61E-49	-1.69E-46
MS.gene050076	MS.gene96096	0.801216	1.00E-48	-1.69E-46
MS.gene050099	MS.gene96096	0.818069	2.38E-52	-1.69E-46
MS.gene050128	MS.gene96096	0.821956	3.06E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene96096	MS.gene24257	PPI
MS.gene96096	MS.gene90696	PPI
MS.gene96096	MS.gene27293	PPI
MS.gene96096	MS.gene26983	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96096.t1	MTR_7g075010	97.476	317	8	0	1	317	110	426	0.0	638
MS.gene96096.t1	MTR_7g075000	83.333	150	17	1	176	317	350	499	2.26e-78	247
MS.gene96096.t1	MTR_1g022360	40.891	247	146	0	63	309	3	249	4.85e-58	190
MS.gene96096.t1	MTR_1g112240	26.937	271	163	2	70	305	170	440	1.68e-22	98.2
MS.gene96096.t1	MTR_1g112240	26.446	242	178	0	65	306	305	546	7.59e-18	84.3
MS.gene96096.t1	MTR_1g112240	22.150	307	216	3	21	316	93	387	1.26e-15	77.8
MS.gene96096.t1	MTR_5g090210	25.103	243	182	0	63	305	439	681	8.07e-22	96.3
MS.gene96096.t1	MTR_5g090210	24.889	225	169	0	70	294	411	635	5.65e-14	72.8
MS.gene96096.t1	MTR_5g090210	21.610	236	149	2	63	262	474	709	8.02e-11	63.2
MS.gene96096.t1	MTR_8g080940	27.004	237	173	0	64	300	759	995	6.14e-21	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96096.t1	AT1G01970	67.722	316	102	0	1	316	94	409	5.05e-157	445
MS.gene96096.t1	AT1G19520	40.594	303	178	2	4	305	317	618	1.17e-71	235
MS.gene96096.t1	AT1G09680	23.729	295	215	3	18	305	252	543	2.79e-21	94.7
MS.gene96096.t1	AT1G09680	22.222	198	154	0	63	260	371	568	1.91e-13	71.2
MS.gene96096.t1	AT1G09680	25.581	172	128	0	62	233	405	576	6.73e-11	63.5
MS.gene96096.t1	AT1G18900	26.437	261	157	3	63	288	390	650	6.94e-21	94.0
MS.gene96096.t1	AT1G18900	26.437	261	157	3	63	288	390	650	8.59e-21	93.6
MS.gene96096.t1	AT1G18900	26.437	261	157	3	63	288	390	650	8.59e-21	93.6
MS.gene96096.t1	AT1G18900	26.437	261	157	3	63	288	390	650	8.59e-21	93.6
MS.gene96096.t1	AT1G74750	24.904	261	161	2	63	288	385	645	1.56e-18	86.7

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Find 65 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCTAGAATACTTGCT+GGG	0.606719	7.4:+30142767	MS.gene96096:CDS
AAGTGATGGCATCATGGTCA+AGG	0.567360	7.4:+30142741	MS.gene96096:CDS
ACATATAATTTGTCTCATAA+CGG	0.478188	7.4:-30140783	None:intergenic
ACATTAGCTTATTTGGTGAC+TGG	0.502736	7.4:-30142854	None:intergenic
ACTTTGACCAGCCATACTGT+AGG	0.625951	7.4:-30142581	None:intergenic
AGAAATATATGCAGGAAGTG+AGG	0.629058	7.4:+30142432	MS.gene96096:CDS
AGAGCTGGAATGCCTGAAAA+AGG	0.349466	7.4:+30142379	MS.gene96096:CDS
AGGCATTCCAGCTCTGATGT+AGG	0.518331	7.4:-30142371	None:intergenic
ATAAATACCTCAAGATAAAG+AGG	0.490421	7.4:-30140920	None:intergenic
ATCACGAAGATTAGGTTCAA+AGG	0.536786	7.4:-30142119	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTTATATGTTTGCACTTA+TGG	+	chr7.4:30141002-30141021	MS.gene96096:intron	30.0%
ATCTTACGGATCAATGATTA+TGG	+	chr7.4:30142348-30142367	MS.gene96096:CDS	30.0%
CATTTATTATAGGCCATGTT+TGG	+	chr7.4:30141051-30141070	MS.gene96096:intron	30.0%
CCTTGAATCAAAATCTTTGT+AGG	-	chr7.4:30141891-30141910	None:intergenic	30.0%
GAAGATATGCATTTATCAGT+AGG	-	chr7.4:30142655-30142674	None:intergenic	30.0%
GATCTCTTCAAAATATTCCT+CGG	-	chr7.4:30142299-30142318	None:intergenic	30.0%
TTGTAGGACGATGTTTAATT+AGG	-	chr7.4:30141875-30141894	None:intergenic	30.0%
TTTCACGTTAATGAAGCAAA+GGG	+	chr7.4:30142201-30142220	MS.gene96096:CDS	30.0%
TTTGAAGAGATCAAATTGCT+TGG	+	chr7.4:30142307-30142326	MS.gene96096:CDS	30.0%
AAGCACTTGTGAGATTGTTT+GGG	-	chr7.4:30141278-30141297	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	30140764	30142873	30140764	ID=MS.gene96096
chr7.4	mRNA	30140764	30142873	30140764	ID=MS.gene96096.t1;Parent=MS.gene96096
chr7.4	exon	30140764	30140934	30140764	ID=MS.gene96096.t1.exon1;Parent=MS.gene96096.t1
chr7.4	CDS	30140764	30140934	30140764	ID=cds.MS.gene96096.t1;Parent=MS.gene96096.t1
chr7.4	exon	30142091	30142873	30142091	ID=MS.gene96096.t1.exon2;Parent=MS.gene96096.t1
chr7.4	CDS	30142091	30142873	30142091	ID=cds.MS.gene96096.t1;Parent=MS.gene96096.t1

Gene Sequence

>MS.gene96096

ATGGTTAAGCGATGTAAAGCCGTTATGAGACAAATTATATGTTTTTCGGAAGAAAAAGGAAGATTATGTGATGTTTTGAGGGCTTGGGTGGAGATTATGAAGCCTACGAGAGCTGATTGGCTTTCGGTTTTGAAAGAGTTGAAGAATATGGATCATCCTCTTTATCTTGAGGTATTTATTTCACATCTTTTACTTTTTTGGTACAATGGTGATAATGAGATTGTAATTTGTATCTATCAGCTTATATGTTTGCACTTATGGCAATTGTACTTTGCGTCTTTTAATTTCATTTATTATAGGCCATGTTTGGATAAAAAACCTAATTTGCAGCTTATCGCATACGCGCTTATATGTAAGCACTTATCAATAACATATTTCTATTACACAAGATAAAAAAAAAAAGTCAAATTATTTTCATGGAAGCTATCAGCTGTTTTATTAAGCTATCTTGGAGAACTTATGGAAATAAGCTGAAAAAAACTTATGCACATAATTTGTTTTCACAAGTTCTCCCAAACAATCTCACAAGTGCTTATGCTAGTAGACACTCAAATAAGGCAATTAAAACAGGCCCACAATACTTTTTGTTTCTGTATATTGTTTTGCATATGACATATTTACTGCTCTATCTAACATAGTAACATAGAATAGGACCTAATTTTTTAGTTAATGTATTGGAGTTTCTAGATTTTATTCTGGAGGAGTTTCTGACATCTTGTCGGCATGTAGTTGCTTTAGAAATCTGTATATTTTTGTGTCTTAACTGATTTATTAAGTGCTTTAGTCACCCAAATTTCTGCTGTCAGATGAGAAATGAATAAAGTGAGATGTTTCCTGAAATTGGCCATTCTGGGGTTTCTTTGACTGAAAAGAATGCAGTTATTAAATATCATTCTGTGTTCTGTCATATGGTTTTCACATCTTATCTACATCAACTAGATGCAAGTTTGTGGTTTAGGTATATAGTATACCACAAAGTAGCGATTGCTTAATTAAAAGAAGTTTAATGAATATGTATTATGAATATTGTTATGTCCATCATATGGCTGTTATTGGTAATGGGAAGTGCGGTGCAATTTACTGATCTCGTATTCTAAACATCTGGCAACCTAATTAAACATCGTCCTACAAAGATTTTGATTCAAGGAACCAATTTACCTTTATAAAAAAAGGAATGGAAACAATTTACTTTATTCAAATACTTTTCTTGGTGGGTGGTCATTTTCTTACCTGAATATATGCAACTTGATTTGGCTGCATGAGTGAAACATTTATTTACTTTATTCTCTACAATCTGAAACAAAATTTGATTTATATACTTTCATAGGTGGCAGAGCATGCTCTTGTTGAAGAATCCTTTGAACCTAATCTTCGTGATTATACAAAGTTAATTCATTATTATAGCAAGGAGAATCAACTCGAAGCTGCTGAGAATATTTTCACGTTAATGAAGCAAAGGGGCTTCATCTGTGATCAAGTAATTCTGACTACCATGGTTCACATGTACAGCAAGGCTGGCCATCTTGACCGGGCCGAGGAATATTTTGAAGAGATCAAATTGCTTGGTGAACCTTTGGACAAAAGATCTTACGGATCAATGATTATGGCCTACATCAGAGCTGGAATGCCTGAAAAAGGAGAGAGTTTTCTTGAAGAAATGGATGCTCAAGAAATATATGCAGGAAGTGAGGTTTACAAAGCATTACTTAGAGCTTACTCCGGAATCGGTAACGCAGAAGGCGCAGAAAGGGTCTTTGATGCAATTCAGCTGGCCGGTATCATCCCAGATGATAAAATGTGCGGTCTTCTTATTTATGCCTACAGTATGGCTGGTCAAAGTCAAAAGGCTCGAATTGCATTTGAAAATATGAAAAAAGCAGGTATCGAACCTACTGATAAATGCATATCTTCCGTACTTGTTGCTTATGAAAAGGAAAACATGCTAAATACAGCATTAGAGTTTCTAATAGAGTTGGAAAGTGATGGCATCATGGTCAAGGAAGAAACTTCTAGAATACTTGCTGGGTGGTTCCGGAAACTCGGGGTGGTAGAAGAGGTAGAGCTTGTTTTAAGAGACTTTGCCACCACTACCAGTCACCAAATAAGCTAA

Protein sequence

>MS.gene96096.t1

MVKRCKAVMRQIICFSEEKGRLCDVLRAWVEIMKPTRADWLSVLKELKNMDHPLYLEVAEHALVEESFEPNLRDYTKLIHYYSKENQLEAAENIFTLMKQRGFICDQVILTTMVHMYSKAGHLDRAEEYFEEIKLLGEPLDKRSYGSMIMAYIRAGMPEKGESFLEEMDAQEIYAGSEVYKALLRAYSGIGNAEGAERVFDAIQLAGIIPDDKMCGLLIYAYSMAGQSQKARIAFENMKKAGIEPTDKCISSVLVAYEKENMLNTALEFLIELESDGIMVKEETSRILAGWFRKLGVVEEVELVLRDFATTTSHQIS