Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24263.t1 | XP_013466122.1 | 91 | 591 | 40 | 1 | 1 | 591 | 1 | 578 | 3.40E-238 | 834.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24263.t1 | A0A072VEX8 | 91.0 | 591 | 40 | 1 | 1 | 591 | 1 | 578 | 2.5e-238 | 834.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049239 | MS.gene24263 | 0.802551 | 5.32E-49 | -1.69E-46 |
| MS.gene054429 | MS.gene24263 | 0.807765 | 4.31E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24263.t1 | MTR_1g022365 | 91.892 | 592 | 33 | 2 | 1 | 591 | 1 | 578 | 0.0 | 1072 |
| MS.gene24263.t1 | MTR_3g111950 | 39.759 | 249 | 76 | 12 | 371 | 585 | 55 | 263 | 3.22e-33 | 128 |
| MS.gene24263.t1 | MTR_1g023790 | 94.286 | 35 | 2 | 0 | 520 | 554 | 18 | 52 | 1.87e-17 | 77.0 |
| MS.gene24263.t1 | MTR_7g117980 | 36.283 | 113 | 64 | 4 | 437 | 543 | 246 | 356 | 3.79e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24263.t1 | AT1G75260 | 34.450 | 209 | 108 | 6 | 404 | 589 | 309 | 511 | 8.85e-24 | 105 |
Find 129 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCAGCAGAAGAATT+TGG | 0.192471 | 1.1:+1923389 | None:intergenic |
| AAAATCCCTTCTTGGCTATC+AGG | 0.245435 | 1.1:-1923785 | MS.gene24263:CDS |
| TCTACCTCGCAAGAAGAAAA+AGG | 0.256159 | 1.1:-1923059 | MS.gene24263:CDS |
| TTCAATGGGGACTTCATCTT+TGG | 0.269120 | 1.1:+1922996 | None:intergenic |
| GTCTTTATCGTCGTGGTTGA+TGG | 0.275216 | 1.1:+1922182 | None:intergenic |
| AATAATTCACTCATGTTTCA+TGG | 0.298043 | 1.1:-1922264 | MS.gene24263:CDS |
| TCTCTTTCTCTTTAGTTTGA+AGG | 0.302700 | 1.1:+1922856 | None:intergenic |
| GGACGACGAGACATTGATTC+AGG | 0.324415 | 1.1:+1923758 | None:intergenic |
| AAGGGTCAATCCACATTCAT+AGG | 0.332387 | 1.1:-1922422 | MS.gene24263:CDS |
| AGCTCTAGGGCCGAAGGATA+TGG | 0.364433 | 1.1:+1923182 | None:intergenic |
| ATTTGGCTTTGGCACCTTCA+TGG | 0.372180 | 1.1:+1923406 | None:intergenic |
| ATCTTTGGTTCTGCTTCACT+TGG | 0.374825 | 1.1:+1923011 | None:intergenic |
| CAGCCAACAGTTCGCCGTTA+TGG | 0.376958 | 1.1:-1922105 | MS.gene24263:CDS |
| GATAATGGTGTTGGCTTAGT+TGG | 0.377781 | 1.1:+1923578 | None:intergenic |
| TGTAGCGGCTTCTTGAGTTT+TGG | 0.384330 | 1.1:+1923631 | None:intergenic |
| ACAAACACTGACGATGATAA+TGG | 0.389981 | 1.1:+1923563 | None:intergenic |
| CTCTTCGGACTCAGTCTTGT+AGG | 0.397966 | 1.1:+1922398 | None:intergenic |
| TTTGTGTCTGAACGTGTAAT+TGG | 0.401935 | 1.1:+1923719 | None:intergenic |
| GGTTCTGCTTCACTTGGAAC+CGG | 0.405060 | 1.1:+1923017 | None:intergenic |
| ACATGGTTTGGCGATGTTGA+TGG | 0.413588 | 1.1:+1923512 | None:intergenic |
| GGAAAGGCACCAATGCAAAA+AGG | 0.413609 | 1.1:-1922597 | MS.gene24263:CDS |
| TCAGCAGAAGAATTTGGCTT+TGG | 0.419185 | 1.1:+1923395 | None:intergenic |
| ATCATCTCATGCAGCATCTC+AGG | 0.426612 | 1.1:-1923474 | MS.gene24263:CDS |
| CATGCCAAAGCATCTTCTTC+AGG | 0.430172 | 1.1:-1922762 | MS.gene24263:CDS |
| ATCTCCTTGGACCTGGACCC+CGG | 0.433688 | 1.1:-1923138 | MS.gene24263:CDS |
| GTGTGCTTAGAAAGATTCTC+TGG | 0.434313 | 1.1:+1922954 | None:intergenic |
| AAGGGAAAAGGAAAATGAAA+AGG | 0.436087 | 1.1:-1922619 | MS.gene24263:CDS |
| TGAGTTTCCAAAGGGGACTT+TGG | 0.437954 | 1.1:+1922888 | None:intergenic |
| GCATCATCTACCATCTCCTT+TGG | 0.454093 | 1.1:-1923276 | MS.gene24263:CDS |
| GTTATGAGAGAGGGCCTAGA+TGG | 0.455776 | 1.1:+1923680 | None:intergenic |
| TAGTTGGGTGAGGCGGTGAA+TGG | 0.458825 | 1.1:+1923594 | None:intergenic |
| GGGGTCCAGGTCCAAGGAGA+TGG | 0.458939 | 1.1:+1923140 | None:intergenic |
| AATAACACCAAAGTCCCCTT+TGG | 0.463540 | 1.1:-1922895 | MS.gene24263:CDS |
| CATAACGGCGAACTGTTGGC+TGG | 0.467257 | 1.1:+1922106 | None:intergenic |
| GCATCATCCACCGTCGACTT+TGG | 0.467942 | 1.1:-1923318 | MS.gene24263:CDS |
| CTTTGGCATGTTGATTCGGT+TGG | 0.469572 | 1.1:+1922775 | None:intergenic |
| GGGCCTAGATGGTCTTTGAA+TGG | 0.471208 | 1.1:+1923691 | None:intergenic |
| GGTGGAGAGTTGACATGGTT+TGG | 0.472367 | 1.1:+1923500 | None:intergenic |
| ATAATGGTGTTGGCTTAGTT+GGG | 0.473846 | 1.1:+1923579 | None:intergenic |
| TCGTGGTTGATGGTTTCTAC+AGG | 0.474450 | 1.1:+1922192 | None:intergenic |
| TTTCCCTTTCCTCGCTCGAT+GGG | 0.476396 | 1.1:+1922634 | None:intergenic |
| CGCTCTAGGGCCGAAGGAGA+TGG | 0.477305 | 1.1:+1923224 | None:intergenic |
| TGTCACATCAATGCTCTCTT+CGG | 0.477554 | 1.1:+1922383 | None:intergenic |
| GATGCTTTGGCATGTTGATT+CGG | 0.479473 | 1.1:+1922771 | None:intergenic |
| CAATGGAACATGGTGAGGTC+GGG | 0.480101 | 1.1:-1922320 | MS.gene24263:CDS |
| AGCATCGTCCACCATCTCCT+TGG | 0.484267 | 1.1:-1923151 | MS.gene24263:CDS |
| TGCTCTGGGGCCAAAGTCGA+CGG | 0.489813 | 1.1:+1923308 | None:intergenic |
| GGTGGATGATGCTGAGAAGC+TGG | 0.491016 | 1.1:+1923329 | None:intergenic |
| TGTCCCATCGAGCGAGGAAA+GGG | 0.494803 | 1.1:-1922637 | MS.gene24263:CDS |
| TCTGAATCAGATAAGAAAGA+AGG | 0.496204 | 1.1:-1922441 | MS.gene24263:CDS |
| TGAGGTTGAGTTGAGACAAC+AGG | 0.500660 | 1.1:+1923449 | None:intergenic |
| ATCGAGCGAGGAAAGGGAAA+AGG | 0.501898 | 1.1:-1922631 | MS.gene24263:CDS |
| GGCCTAGATGGTCTTTGAAT+GGG | 0.503318 | 1.1:+1923692 | None:intergenic |
| AGTGCAACCAACACAACCTA+TGG | 0.506396 | 1.1:-1922529 | MS.gene24263:CDS |
| CGCTCTATATCCAAAGGAGA+TGG | 0.507278 | 1.1:+1923266 | None:intergenic |
| TGCTCCGGGGTCCAGGTCCA+AGG | 0.507731 | 1.1:+1923134 | None:intergenic |
| TTAGAAACTCGGGGTGATGT+AGG | 0.508330 | 1.1:+1923359 | None:intergenic |
| GGAAGTGTAACTTGAACTCC+AGG | 0.513147 | 1.1:+1922222 | None:intergenic |
| GGACTAGGAGAAAATTCTGC+AGG | 0.513377 | 1.1:+1923656 | None:intergenic |
| AGATTCTCTGGTTGTGACAC+GGG | 0.514523 | 1.1:+1922966 | None:intergenic |
| GAAGATGTCAATGTCTGATC+CGG | 0.516487 | 1.1:-1923036 | MS.gene24263:CDS |
| GGAACATGGTGAGGTCGGGC+AGG | 0.517884 | 1.1:-1922316 | MS.gene24263:CDS |
| AGGGAAAAGGAAAATGAAAA+GGG | 0.518930 | 1.1:-1922618 | MS.gene24263:CDS |
| TTGTCCTCCATAGGTTGTGT+TGG | 0.520819 | 1.1:+1922522 | None:intergenic |
| TGTGCCTGAAGAAGATGCTT+TGG | 0.521322 | 1.1:+1922758 | None:intergenic |
| ACTTCCTTTGAGTTTCCAAA+GGG | 0.524701 | 1.1:+1922880 | None:intergenic |
| GCATTATCCACCATCTCCTT+CGG | 0.525548 | 1.1:-1923234 | MS.gene24263:CDS |
| GCATCATCCACCATATCCTT+CGG | 0.526033 | 1.1:-1923192 | MS.gene24263:CDS |
| AGCATTGATGTGACAACAGA+TGG | 0.531129 | 1.1:-1922375 | MS.gene24263:CDS |
| GGTGTTGGCTTAGTTGGGTG+AGG | 0.539545 | 1.1:+1923584 | None:intergenic |
| GTCCACCATCTCCTTGGACC+TGG | 0.539700 | 1.1:-1923145 | MS.gene24263:CDS |
| TCAATGGAACATGGTGAGGT+CGG | 0.539979 | 1.1:-1922321 | MS.gene24263:CDS |
| TTCAGTGTCATAACACTGAC+TGG | 0.540460 | 1.1:-1922495 | MS.gene24263:CDS |
| GGCGATGTTGATGGAGAAGG+TGG | 0.541251 | 1.1:+1923521 | None:intergenic |
| GGTGTTCCTGATAGCCAAGA+AGG | 0.547165 | 1.1:+1923779 | None:intergenic |
| TCAATCAATGAAAGAGACCC+TGG | 0.549089 | 1.1:-1922240 | MS.gene24263:CDS |
| TGAGATGCTGCATGAGATGA+TGG | 0.549906 | 1.1:+1923476 | None:intergenic |
| CGACCATAACGGCGAACTGT+TGG | 0.551046 | 1.1:+1922102 | None:intergenic |
| CAATGAGGAAGAAGACTCAA+TGG | 0.551065 | 1.1:-1922337 | MS.gene24263:CDS |
| AACTTCCTTTGAGTTTCCAA+AGG | 0.552524 | 1.1:+1922879 | None:intergenic |
| GGACTGAGTTTAACATTAGT+CGG | 0.558841 | 1.1:-1922146 | MS.gene24263:CDS |
| GTCCAGGTCCAAGGAGATGG+TGG | 0.560062 | 1.1:+1923143 | None:intergenic |
| TTGTCCCATCGAGCGAGGAA+AGG | 0.563695 | 1.1:-1922638 | MS.gene24263:CDS |
| TTCCCATTCAAAGACCATCT+AGG | 0.566568 | 1.1:-1923694 | MS.gene24263:CDS |
| TATGGTCGCAAGTTCAGTTG+TGG | 0.571661 | 1.1:-1922087 | MS.gene24263:CDS |
| AAAGGAAAATGAAAAGGGAA+AGG | 0.572297 | 1.1:-1922613 | MS.gene24263:CDS |
| CTGAATCAGATAAGAAAGAA+GGG | 0.574236 | 1.1:-1922440 | MS.gene24263:CDS |
| TTTCCACATCAAACTCTAGT+GGG | 0.574624 | 1.1:-1922683 | MS.gene24263:CDS |
| AACTGAACTTGCGACCATAA+CGG | 0.579458 | 1.1:+1922091 | None:intergenic |
| AGGGTCAATCCACATTCATA+GGG | 0.580060 | 1.1:-1922421 | MS.gene24263:CDS |
| CTCTCATCATGACACCATGA+AGG | 0.582906 | 1.1:-1923420 | MS.gene24263:CDS |
| AAGATTCTCTGGTTGTGACA+CGG | 0.584236 | 1.1:+1922965 | None:intergenic |
| TCTTGTAGGCCCTATGAATG+TGG | 0.587297 | 1.1:+1922412 | None:intergenic |
| TTTCCCACTAGAGTTTGATG+TGG | 0.593804 | 1.1:+1922680 | None:intergenic |
| TTTGGCGATGTTGATGGAGA+AGG | 0.595989 | 1.1:+1923518 | None:intergenic |
| AAGAATTGTCCCATCGAGCG+AGG | 0.597091 | 1.1:-1922643 | MS.gene24263:CDS |
| TTCTGCAGGGGTTATGAGAG+AGG | 0.599326 | 1.1:+1923670 | None:intergenic |
| TTCATGGTGTCATGATGAGA+GGG | 0.599426 | 1.1:+1923422 | None:intergenic |
| CTTCATGGTGTCATGATGAG+AGG | 0.599937 | 1.1:+1923421 | None:intergenic |
| ATAAAGACACTCACAATCGC+AGG | 0.606983 | 1.1:-1922167 | MS.gene24263:CDS |
| ATGGTGGTGGAGAGTTGACA+TGG | 0.608320 | 1.1:+1923495 | None:intergenic |
| GACTAGGAGAAAATTCTGCA+GGG | 0.610417 | 1.1:+1923657 | None:intergenic |
| GTTGGCTTAGTTGGGTGAGG+CGG | 0.613775 | 1.1:+1923587 | None:intergenic |
| GATTCTCTGGTTGTGACACG+GGG | 0.616837 | 1.1:+1922967 | None:intergenic |
| AGTCCCCTTTGGAAACTCAA+AGG | 0.618613 | 1.1:-1922884 | MS.gene24263:CDS |
| ACAACGGATAAGAAGCATCA+TGG | 0.619596 | 1.1:-1922738 | MS.gene24263:CDS |
| ACACTGACTGGTGACAATAG+AGG | 0.621058 | 1.1:-1922483 | MS.gene24263:CDS |
| AGCATCTTCTTCAGGCACAA+CGG | 0.624746 | 1.1:-1922754 | MS.gene24263:CDS |
| GCTGCATGAGATGATGGTGG+TGG | 0.628158 | 1.1:+1923482 | None:intergenic |
| AGAGGAGCAACAATGCATGT+TGG | 0.629716 | 1.1:-1922465 | MS.gene24263:CDS |
| GCAACCAACACAACCTATGG+AGG | 0.633233 | 1.1:-1922526 | MS.gene24263:CDS |
| GTGTTCCTGATAGCCAAGAA+GGG | 0.637553 | 1.1:+1923780 | None:intergenic |
| ACTGACGATGATAATGGTGT+TGG | 0.638275 | 1.1:+1923569 | None:intergenic |
| TCTGCAGGGGTTATGAGAGA+GGG | 0.638447 | 1.1:+1923671 | None:intergenic |
| CTAACCATGAAGAAAACACT+CGG | 0.642497 | 1.1:-1923091 | MS.gene24263:CDS |
| AGACTCAATGGAACATGGTG+AGG | 0.644780 | 1.1:-1922325 | MS.gene24263:CDS |
| GAAGAAGACTCAATGGAACA+TGG | 0.649274 | 1.1:-1922330 | MS.gene24263:CDS |
| TCTAGGGCCGAAGGAGATGG+TGG | 0.656152 | 1.1:+1923227 | None:intergenic |
| TCTGGGGCCAAAGTCGACGG+TGG | 0.660567 | 1.1:+1923311 | None:intergenic |
| TGTGAGTGTCTTTATCGTCG+TGG | 0.661271 | 1.1:+1922175 | None:intergenic |
| GATGTGACAACAGATGGAGA+AGG | 0.661909 | 1.1:-1922369 | MS.gene24263:CDS |
| TCTAGGGCCGAAGGATATGG+TGG | 0.664446 | 1.1:+1923185 | None:intergenic |
| ACTAGGAGAAAATTCTGCAG+GGG | 0.680257 | 1.1:+1923658 | None:intergenic |
| CTTCCTTTGAGTTTCCAAAG+GGG | 0.694307 | 1.1:+1922881 | None:intergenic |
| AGAAGGAAACACTAACAATG+AGG | 0.700109 | 1.1:-1922352 | MS.gene24263:CDS |
| TCATGATGAGAGGGAGACTG+AGG | 0.703551 | 1.1:+1923431 | None:intergenic |
| GATGCTGCATGAGATGATGG+TGG | 0.727541 | 1.1:+1923479 | None:intergenic |
| AGGTTGTGTTGGTTGCACTG+AGG | 0.746719 | 1.1:+1922533 | None:intergenic |
| GAAGTGTAACTTGAACTCCA+GGG | 0.753989 | 1.1:+1922223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTGTTTCTTACTTTTT+TGG | + | chr1.1:1923062-1923081 | None:intergenic | 20.0% |
| ! | AATAATTCACTCATGTTTCA+TGG | - | chr1.1:1923613-1923632 | MS.gene24263:CDS | 25.0% |
| ! | CACAAAAACAAAATTAGATG+AGG | - | chr1.1:1922943-1922962 | MS.gene24263:CDS | 25.0% |
| AAAGGAAAATGAAAAGGGAA+AGG | - | chr1.1:1923264-1923283 | MS.gene24263:CDS | 30.0% | |
| AAGGGAAAAGGAAAATGAAA+AGG | - | chr1.1:1923258-1923277 | MS.gene24263:CDS | 30.0% | |
| AGGGAAAAGGAAAATGAAAA+GGG | - | chr1.1:1923259-1923278 | MS.gene24263:CDS | 30.0% | |
| CTGAATCAGATAAGAAAGAA+GGG | - | chr1.1:1923437-1923456 | MS.gene24263:CDS | 30.0% | |
| TCTGAATCAGATAAGAAAGA+AGG | - | chr1.1:1923436-1923455 | MS.gene24263:CDS | 30.0% | |
| ! | GCAAAAAAATGAGGTGTTAA+AGG | - | chr1.1:1922763-1922782 | MS.gene24263:CDS | 30.0% |
| ! | TCTTTGATACCTTTTTGCAT+TGG | + | chr1.1:1923292-1923311 | None:intergenic | 30.0% |
| !! | TCTCTTTCTCTTTAGTTTGA+AGG | + | chr1.1:1923024-1923043 | None:intergenic | 30.0% |
| !!! | ATGCTCATTTTTTAGCTCTA+GGG | + | chr1.1:1922711-1922730 | None:intergenic | 30.0% |
| !!! | GGGATTTTAAAACGAAATGA+TGG | + | chr1.1:1922080-1922099 | None:intergenic | 30.0% |
| !!! | TTCGTTTTAAAATCCCTTCT+TGG | - | chr1.1:1922084-1922103 | MS.gene24263:CDS | 30.0% |
| !!! | TTTTTTCGCTCTATATCCAA+AGG | + | chr1.1:1922620-1922639 | None:intergenic | 30.0% |
| ACAAACACTGACGATGATAA+TGG | + | chr1.1:1922317-1922336 | None:intergenic | 35.0% | |
| AGAAGGAAACACTAACAATG+AGG | - | chr1.1:1923525-1923544 | MS.gene24263:CDS | 35.0% | |
| CTAACCATGAAGAAAACACT+CGG | - | chr1.1:1922786-1922805 | MS.gene24263:CDS | 35.0% | |
| CTTTCTTCAGCAGAAGAATT+TGG | + | chr1.1:1922491-1922510 | None:intergenic | 35.0% | |
| GGACTGAGTTTAACATTAGT+CGG | - | chr1.1:1923731-1923750 | MS.gene24263:CDS | 35.0% | |
| TTTCCACATCAAACTCTAGT+GGG | - | chr1.1:1923194-1923213 | MS.gene24263:CDS | 35.0% | |
| TTTGTGTCTGAACGTGTAAT+TGG | + | chr1.1:1922161-1922180 | None:intergenic | 35.0% | |
| ! | AACTTCCTTTGAGTTTCCAA+AGG | + | chr1.1:1923001-1923020 | None:intergenic | 35.0% |
| ! | ACTTCCTTTGAGTTTCCAAA+GGG | + | chr1.1:1923000-1923019 | None:intergenic | 35.0% |
| ! | TTTTCCACATCAAACTCTAG+TGG | - | chr1.1:1923193-1923212 | MS.gene24263:CDS | 35.0% |
| !! | ATAATGGTGTTGGCTTAGTT+GGG | + | chr1.1:1922301-1922320 | None:intergenic | 35.0% |
| !! | CTGGCTCAATTTTAGAAACT+CGG | + | chr1.1:1922532-1922551 | None:intergenic | 35.0% |
| !! | TGGCTCAATTTTAGAAACTC+GGG | + | chr1.1:1922531-1922550 | None:intergenic | 35.0% |
| !!! | AACACCTCATTTTTTTGCTC+CGG | + | chr1.1:1922761-1922780 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTCGCTCTA+GGG | + | chr1.1:1922627-1922646 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTTGCTCTG+GGG | + | chr1.1:1922585-1922604 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGATGCGTCTTT+CGG | + | chr1.1:1922143-1922162 | None:intergenic | 35.0% |
| !!! | CTGAATTTTTTGTCCTCCAT+AGG | + | chr1.1:1923367-1923386 | None:intergenic | 35.0% |
| !!! | GATGCTCATTTTTTAGCTCT+AGG | + | chr1.1:1922712-1922731 | None:intergenic | 35.0% |
| !!! | GATGCTCATTTTTTTGCTCT+GGG | + | chr1.1:1922586-1922605 | None:intergenic | 35.0% |
| !!! | GTTTTGAGGTTCAATTGTAG+CGG | + | chr1.1:1922264-1922283 | None:intergenic | 35.0% |
| !!! | TGATGCTCATTTTTTTGCTC+TGG | + | chr1.1:1922587-1922606 | None:intergenic | 35.0% |
| AAAATCCCTTCTTGGCTATC+AGG | - | chr1.1:1922092-1922111 | MS.gene24263:CDS | 40.0% | |
| AACTGAACTTGCGACCATAA+CGG | + | chr1.1:1923789-1923808 | None:intergenic | 40.0% | |
| AAGATTCTCTGGTTGTGACA+CGG | + | chr1.1:1922915-1922934 | None:intergenic | 40.0% | |
| AAGGGTCAATCCACATTCAT+AGG | - | chr1.1:1923455-1923474 | MS.gene24263:CDS | 40.0% | |
| AATAACACCAAAGTCCCCTT+TGG | - | chr1.1:1922982-1923001 | MS.gene24263:CDS | 40.0% | |
| ACTAGGAGAAAATTCTGCAG+GGG | + | chr1.1:1922222-1922241 | None:intergenic | 40.0% | |
| AGGGTCAATCCACATTCATA+GGG | - | chr1.1:1923456-1923475 | MS.gene24263:CDS | 40.0% | |
| ATAAAGACACTCACAATCGC+AGG | - | chr1.1:1923710-1923729 | MS.gene24263:CDS | 40.0% | |
| CAATGAGGAAGAAGACTCAA+TGG | - | chr1.1:1923540-1923559 | MS.gene24263:CDS | 40.0% | |
| CTACCTCGCAAGAAGAAAAA+GGG | - | chr1.1:1922819-1922838 | MS.gene24263:CDS | 40.0% | |
| GAAGAAGACTCAATGGAACA+TGG | - | chr1.1:1923547-1923566 | MS.gene24263:CDS | 40.0% | |
| GAAGATGTCAATGTCTGATC+CGG | - | chr1.1:1922841-1922860 | MS.gene24263:CDS | 40.0% | |
| GAAGTGTAACTTGAACTCCA+GGG | + | chr1.1:1923657-1923676 | None:intergenic | 40.0% | |
| GACTAGGAGAAAATTCTGCA+GGG | + | chr1.1:1922223-1922242 | None:intergenic | 40.0% | |
| GTGTGCTTAGAAAGATTCTC+TGG | + | chr1.1:1922926-1922945 | None:intergenic | 40.0% | |
| TCAATCAATGAAAGAGACCC+TGG | - | chr1.1:1923637-1923656 | MS.gene24263:CDS | 40.0% | |
| TCTACCTCGCAAGAAGAAAA+AGG | - | chr1.1:1922818-1922837 | MS.gene24263:CDS | 40.0% | |
| TGTCACATCAATGCTCTCTT+CGG | + | chr1.1:1923497-1923516 | None:intergenic | 40.0% | |
| TTCAATGGGGACTTCATCTT+TGG | + | chr1.1:1922884-1922903 | None:intergenic | 40.0% | |
| TTCAGTGTCATAACACTGAC+TGG | - | chr1.1:1923382-1923401 | MS.gene24263:CDS | 40.0% | |
| TTCCCATTCAAAGACCATCT+AGG | - | chr1.1:1922183-1922202 | MS.gene24263:CDS | 40.0% | |
| TTTCCCACTAGAGTTTGATG+TGG | + | chr1.1:1923200-1923219 | None:intergenic | 40.0% | |
| ! | ACACGGGGATGATTTTCAAT+GGG | + | chr1.1:1922898-1922917 | None:intergenic | 40.0% |
| ! | ATGGTTTCTACAGGCTTTTG+TGG | + | chr1.1:1923679-1923698 | None:intergenic | 40.0% |
| ! | CTTCCTTTGAGTTTCCAAAG+GGG | + | chr1.1:1922999-1923018 | None:intergenic | 40.0% |
| ! | GATGCTTTGGCATGTTGATT+CGG | + | chr1.1:1923109-1923128 | None:intergenic | 40.0% |
| ! | TATGCCGAGTGTTTTCTTCA+TGG | + | chr1.1:1922793-1922812 | None:intergenic | 40.0% |
| ! | TCAGCAGAAGAATTTGGCTT+TGG | + | chr1.1:1922485-1922504 | None:intergenic | 40.0% |
| !! | ACAACGGATAAGAAGCATCA+TGG | - | chr1.1:1923139-1923158 | MS.gene24263:CDS | 40.0% |
| !! | ACTGACGATGATAATGGTGT+TGG | + | chr1.1:1922311-1922330 | None:intergenic | 40.0% |
| !! | AGCATTGATGTGACAACAGA+TGG | - | chr1.1:1923502-1923521 | MS.gene24263:CDS | 40.0% |
| !! | ATCTTTGGTTCTGCTTCACT+TGG | + | chr1.1:1922869-1922888 | None:intergenic | 40.0% |
| !! | GATAATGGTGTTGGCTTAGT+TGG | + | chr1.1:1922302-1922321 | None:intergenic | 40.0% |
| !! | GGCTCAATTTTAGAAACTCG+GGG | + | chr1.1:1922530-1922549 | None:intergenic | 40.0% |
| !! | TCTTGAGTTTTGGTAGGACT+AGG | + | chr1.1:1922239-1922258 | None:intergenic | 40.0% |
| !! | TTCATGGTGTCATGATGAGA+GGG | + | chr1.1:1922458-1922477 | None:intergenic | 40.0% |
| !!! | ACACCTCATTTTTTTGCTCC+GGG | + | chr1.1:1922760-1922779 | None:intergenic | 40.0% |
| !!! | GATGCTCATTTTTTCGCTCT+AGG | + | chr1.1:1922670-1922689 | None:intergenic | 40.0% |
| AGACTCAATGGAACATGGTG+AGG | - | chr1.1:1923552-1923571 | MS.gene24263:CDS | 45.0% | |
| AGAGGAGCAACAATGCATGT+TGG | - | chr1.1:1923412-1923431 | MS.gene24263:CDS | 45.0% | |
| AGATTCTCTGGTTGTGACAC+GGG | + | chr1.1:1922914-1922933 | None:intergenic | 45.0% | |
| AGCATCTTCTTCAGGCACAA+CGG | - | chr1.1:1923123-1923142 | MS.gene24263:CDS | 45.0% | |
| AGTGCAACCAACACAACCTA+TGG | - | chr1.1:1923348-1923367 | MS.gene24263:CDS | 45.0% | |
| ATCATCTCATGCAGCATCTC+AGG | - | chr1.1:1922403-1922422 | MS.gene24263:CDS | 45.0% | |
| CGCTCTATATCCAAAGGAGA+TGG | + | chr1.1:1922614-1922633 | None:intergenic | 45.0% | |
| CTCTCATCATGACACCATGA+AGG | - | chr1.1:1922457-1922476 | MS.gene24263:CDS | 45.0% | |
| GATGTGACAACAGATGGAGA+AGG | - | chr1.1:1923508-1923527 | MS.gene24263:CDS | 45.0% | |
| GCATCATCCACCATATCCTT+CGG | - | chr1.1:1922685-1922704 | MS.gene24263:CDS | 45.0% | |
| GCATCATCTACCATCTCCTT+TGG | - | chr1.1:1922601-1922620 | MS.gene24263:CDS | 45.0% | |
| GCATTATCCACCATCTCCTT+CGG | - | chr1.1:1922643-1922662 | MS.gene24263:CDS | 45.0% | |
| GGACTAGGAGAAAATTCTGC+AGG | + | chr1.1:1922224-1922243 | None:intergenic | 45.0% | |
| GGCCTAGATGGTCTTTGAAT+GGG | + | chr1.1:1922188-1922207 | None:intergenic | 45.0% | |
| GTCTTTATCGTCGTGGTTGA+TGG | + | chr1.1:1923698-1923717 | None:intergenic | 45.0% | |
| GTGTTCCTGATAGCCAAGAA+GGG | + | chr1.1:1922100-1922119 | None:intergenic | 45.0% | |
| TATGGTCGCAAGTTCAGTTG+TGG | - | chr1.1:1923790-1923809 | MS.gene24263:CDS | 45.0% | |
| TCAATGGAACATGGTGAGGT+CGG | - | chr1.1:1923556-1923575 | MS.gene24263:CDS | 45.0% | |
| TCTTGTAGGCCCTATGAATG+TGG | + | chr1.1:1923468-1923487 | None:intergenic | 45.0% | |
| TGAGATGCTGCATGAGATGA+TGG | + | chr1.1:1922404-1922423 | None:intergenic | 45.0% | |
| TGAGTTTCCAAAGGGGACTT+TGG | + | chr1.1:1922992-1923011 | None:intergenic | 45.0% | |
| TGTGAGTGTCTTTATCGTCG+TGG | + | chr1.1:1923705-1923724 | None:intergenic | 45.0% | |
| TGTGCCTGAAGAAGATGCTT+TGG | + | chr1.1:1923122-1923141 | None:intergenic | 45.0% | |
| TTAGAAACTCGGGGTGATGT+AGG | + | chr1.1:1922521-1922540 | None:intergenic | 45.0% | |
| TTGTCCTCCATAGGTTGTGT+TGG | + | chr1.1:1923358-1923377 | None:intergenic | 45.0% | |
| ! | ACACTGACTGGTGACAATAG+AGG | - | chr1.1:1923394-1923413 | MS.gene24263:CDS | 45.0% |
| ! | ACATGGTTTGGCGATGTTGA+TGG | + | chr1.1:1922368-1922387 | None:intergenic | 45.0% |
| ! | AGTCCCCTTTGGAAACTCAA+AGG | - | chr1.1:1922993-1923012 | MS.gene24263:CDS | 45.0% |
| ! | CACGGGGATGATTTTCAATG+GGG | + | chr1.1:1922897-1922916 | None:intergenic | 45.0% |
| ! | CATGCCAAAGCATCTTCTTC+AGG | - | chr1.1:1923115-1923134 | MS.gene24263:CDS | 45.0% |
| ! | CTTCCCTTTTTCTTCTTGCG+AGG | + | chr1.1:1922825-1922844 | None:intergenic | 45.0% |
| ! | GACACGGGGATGATTTTCAA+TGG | + | chr1.1:1922899-1922918 | None:intergenic | 45.0% |
| ! | GGAAGTGTAACTTGAACTCC+AGG | + | chr1.1:1923658-1923677 | None:intergenic | 45.0% |
| ! | TGTAGCGGCTTCTTGAGTTT+TGG | + | chr1.1:1922249-1922268 | None:intergenic | 45.0% |
| ! | TTTGGCGATGTTGATGGAGA+AGG | + | chr1.1:1922362-1922381 | None:intergenic | 45.0% |
| !! | ATTTGGCTTTGGCACCTTCA+TGG | + | chr1.1:1922474-1922493 | None:intergenic | 45.0% |
| !! | CTTCATGGTGTCATGATGAG+AGG | + | chr1.1:1922459-1922478 | None:intergenic | 45.0% |
| !! | CTTTGGCATGTTGATTCGGT+TGG | + | chr1.1:1923105-1923124 | None:intergenic | 45.0% |
| !! | GGAAAGGCACCAATGCAAAA+AGG | - | chr1.1:1923280-1923299 | MS.gene24263:CDS | 45.0% |
| !! | TCGTGGTTGATGGTTTCTAC+AGG | + | chr1.1:1923688-1923707 | None:intergenic | 45.0% |
| !! | TGAGGTTGAGTTGAGACAAC+AGG | + | chr1.1:1922431-1922450 | None:intergenic | 45.0% |
| !!! | AGAAGGTGGTTTTGAGTGAG+TGG | + | chr1.1:1922345-1922364 | None:intergenic | 45.0% |
| !!! | CACCTCATTTTTTTGCTCCG+GGG | + | chr1.1:1922759-1922778 | None:intergenic | 45.0% |
| !!! | TTTTTTAGCTCTAGGGCCGA+AGG | + | chr1.1:1922704-1922723 | None:intergenic | 45.0% |
| AAGAATTGTCCCATCGAGCG+AGG | - | chr1.1:1923234-1923253 | MS.gene24263:CDS | 50.0% | |
| ATCGAGCGAGGAAAGGGAAA+AGG | - | chr1.1:1923246-1923265 | MS.gene24263:CDS | 50.0% | |
| CAATGGAACATGGTGAGGTC+GGG | - | chr1.1:1923557-1923576 | MS.gene24263:CDS | 50.0% | |
| GACCCCGGAGCAAAAAAATG+AGG | - | chr1.1:1922754-1922773 | MS.gene24263:CDS | 50.0% | |
| GATTCTCTGGTTGTGACACG+GGG | + | chr1.1:1922913-1922932 | None:intergenic | 50.0% | |
| GCAACCAACACAACCTATGG+AGG | - | chr1.1:1923351-1923370 | MS.gene24263:CDS | 50.0% | |
| GGGCCTAGATGGTCTTTGAA+TGG | + | chr1.1:1922189-1922208 | None:intergenic | 50.0% | |
| GGTGGAGAGTTGACATGGTT+TGG | + | chr1.1:1922380-1922399 | None:intergenic | 50.0% | |
| GGTGTTCCTGATAGCCAAGA+AGG | + | chr1.1:1922101-1922120 | None:intergenic | 50.0% | |
| GGTTCTGCTTCACTTGGAAC+CGG | + | chr1.1:1922863-1922882 | None:intergenic | 50.0% | |
| GTTATGAGAGAGGGCCTAGA+TGG | + | chr1.1:1922200-1922219 | None:intergenic | 50.0% | |
| TCATGATGAGAGGGAGACTG+AGG | + | chr1.1:1922449-1922468 | None:intergenic | 50.0% | |
| TCTGCAGGGGTTATGAGAGA+GGG | + | chr1.1:1922209-1922228 | None:intergenic | 50.0% | |
| TTCTGCAGGGGTTATGAGAG+AGG | + | chr1.1:1922210-1922229 | None:intergenic | 50.0% | |
| TTTCCCTTTCCTCGCTCGAT+GGG | + | chr1.1:1923246-1923265 | None:intergenic | 50.0% | |
| ! | CTCTTCGGACTCAGTCTTGT+AGG | + | chr1.1:1923482-1923501 | None:intergenic | 50.0% |
| ! | GATGCTGCATGAGATGATGG+TGG | + | chr1.1:1922401-1922420 | None:intergenic | 50.0% |
| ! | TTTTCCCTTTCCTCGCTCGA+TGG | + | chr1.1:1923247-1923266 | None:intergenic | 50.0% |
| !! | AGGTTGTGTTGGTTGCACTG+AGG | + | chr1.1:1923347-1923366 | None:intergenic | 50.0% |
| !! | ATGGTGGTGGAGAGTTGACA+TGG | + | chr1.1:1922385-1922404 | None:intergenic | 50.0% |
| !! | GCGGCTTCTTGAGTTTTGGT+AGG | + | chr1.1:1922245-1922264 | None:intergenic | 50.0% |
| !! | GGACGACGAGACATTGATTC+AGG | + | chr1.1:1922122-1922141 | None:intergenic | 50.0% |
| !! | TGAGGCGGTGAATGGTTTTG+AGG | + | chr1.1:1922278-1922297 | None:intergenic | 50.0% |
| !!! | ATTTTTTTGCTCCGGGGTCC+AGG | + | chr1.1:1922753-1922772 | None:intergenic | 50.0% |
| !!! | TTTTTTCGCTCTAGGGCCGA+AGG | + | chr1.1:1922662-1922681 | None:intergenic | 50.0% |
| AGCATCGTCCACCATCTCCT+TGG | - | chr1.1:1922726-1922745 | MS.gene24263:CDS | 55.0% | |
| CAGCCAACAGTTCGCCGTTA+TGG | - | chr1.1:1923772-1923791 | MS.gene24263:CDS | 55.0% | |
| CATAACGGCGAACTGTTGGC+TGG | + | chr1.1:1923774-1923793 | None:intergenic | 55.0% | |
| CGACCATAACGGCGAACTGT+TGG | + | chr1.1:1923778-1923797 | None:intergenic | 55.0% | |
| GGTGGATGATGCTGAGAAGC+TGG | + | chr1.1:1922551-1922570 | None:intergenic | 55.0% | |
| TAGTTGGGTGAGGCGGTGAA+TGG | + | chr1.1:1922286-1922305 | None:intergenic | 55.0% | |
| TGTCCCATCGAGCGAGGAAA+GGG | - | chr1.1:1923240-1923259 | MS.gene24263:CDS | 55.0% | |
| TTGTCCCATCGAGCGAGGAA+AGG | - | chr1.1:1923239-1923258 | MS.gene24263:CDS | 55.0% | |
| ! | GGCGATGTTGATGGAGAAGG+TGG | + | chr1.1:1922359-1922378 | None:intergenic | 55.0% |
| ! | GTTGGCTTAGTTGGGTGAGG+CGG | + | chr1.1:1922293-1922312 | None:intergenic | 55.0% |
| ! | TCTAGGGCCGAAGGATATGG+TGG | + | chr1.1:1922695-1922714 | None:intergenic | 55.0% |
| !! | AGCTCTAGGGCCGAAGGATA+TGG | + | chr1.1:1922698-1922717 | None:intergenic | 55.0% |
| !! | GCATCATCCACCGTCGACTT+TGG | - | chr1.1:1922559-1922578 | MS.gene24263:CDS | 55.0% |
| !! | GCTGCATGAGATGATGGTGG+TGG | + | chr1.1:1922398-1922417 | None:intergenic | 55.0% |
| !! | GGTGTTGGCTTAGTTGGGTG+AGG | + | chr1.1:1922296-1922315 | None:intergenic | 55.0% |
| ATCTCCTTGGACCTGGACCC+CGG | - | chr1.1:1922739-1922758 | MS.gene24263:CDS | 60.0% | |
| GTCCACCATCTCCTTGGACC+TGG | - | chr1.1:1922732-1922751 | MS.gene24263:CDS | 60.0% | |
| GTCCAGGTCCAAGGAGATGG+TGG | + | chr1.1:1922737-1922756 | None:intergenic | 60.0% | |
| ! | TCTAGGGCCGAAGGAGATGG+TGG | + | chr1.1:1922653-1922672 | None:intergenic | 60.0% |
| !! | TGCTCTGGGGCCAAAGTCGA+CGG | + | chr1.1:1922572-1922591 | None:intergenic | 60.0% |
| GGAACATGGTGAGGTCGGGC+AGG | - | chr1.1:1923561-1923580 | MS.gene24263:CDS | 65.0% | |
| GGGGTCCAGGTCCAAGGAGA+TGG | + | chr1.1:1922740-1922759 | None:intergenic | 65.0% | |
| ! | TCTGGGGCCAAAGTCGACGG+TGG | + | chr1.1:1922569-1922588 | None:intergenic | 65.0% |
| !! | CGCTCTAGGGCCGAAGGAGA+TGG | + | chr1.1:1922656-1922675 | None:intergenic | 65.0% |
| TGCTCCGGGGTCCAGGTCCA+AGG | + | chr1.1:1922746-1922765 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1922062 | 1923837 | 1922062 | ID=MS.gene24263 |
| chr1.1 | mRNA | 1922062 | 1923837 | 1922062 | ID=MS.gene24263.t1;Parent=MS.gene24263 |
| chr1.1 | exon | 1922062 | 1923837 | 1922062 | ID=MS.gene24263.t1.exon1;Parent=MS.gene24263.t1 |
| chr1.1 | CDS | 1922062 | 1923837 | 1922062 | ID=cds.MS.gene24263.t1;Parent=MS.gene24263.t1 |
| Gene Sequence |
| Protein sequence |
