Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24319.t1 | XP_013466047.1 | 88.8 | 322 | 34 | 2 | 1 | 321 | 1 | 321 | 2.00E-94 | 355.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24319.t1 | A0A072VEP7 | 88.8 | 322 | 34 | 2 | 1 | 321 | 1 | 321 | 1.4e-94 | 355.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene24319 | 0.806484 | 8.04E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene24319 | 0.804381 | 2.22E-49 | -1.69E-46 |
| MS.gene058792 | MS.gene24319 | 0.806569 | 7.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24319.t1 | MTR_1g021875 | 89.130 | 322 | 33 | 2 | 1 | 321 | 1 | 321 | 1.26e-161 | 454 |
| MS.gene24319.t1 | MTR_8g015620 | 59.459 | 296 | 75 | 7 | 65 | 320 | 398 | 688 | 2.76e-56 | 197 |
| MS.gene24319.t1 | MTR_8g015620 | 81.818 | 55 | 10 | 0 | 6 | 60 | 122 | 176 | 6.94e-23 | 99.8 |
| MS.gene24319.t1 | MTR_8g015610 | 60.811 | 74 | 26 | 1 | 247 | 320 | 407 | 477 | 9.96e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24319.t1 | AT3G21290 | 58.621 | 58 | 24 | 0 | 3 | 60 | 145 | 202 | 1.12e-14 | 75.5 |
Find 61 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGTTTGCCTGTTGAATC+TGG | 0.261134 | 1.1:+2567638 | MS.gene24319:CDS |
| TTGTATAATCTTTGCGCTCC+TGG | 0.276804 | 1.1:-2569897 | None:intergenic |
| CAGATTTCTGCTTTGTGCTC+TGG | 0.291560 | 1.1:-2569649 | None:intergenic |
| ATCTGAGGAACTCCCTAAAA+TGG | 0.323801 | 1.1:+2569792 | MS.gene24319:CDS |
| TGTATAATCTTTGCGCTCCT+GGG | 0.347101 | 1.1:-2569896 | None:intergenic |
| ACTCTTCATGGGCAGGTGTT+AGG | 0.364413 | 1.1:-2569333 | None:intergenic |
| CAGCATCAAAGTGGTGTAGA+TGG | 0.384070 | 1.1:+2567614 | MS.gene24319:CDS |
| AGAAATCTGAAGGAACAAAA+AGG | 0.400328 | 1.1:+2570043 | MS.gene24319:CDS |
| TATCTAAAGGTAAACATATG+AGG | 0.400818 | 1.1:+2569995 | MS.gene24319:CDS |
| CTCTTCCATCAGCGAGGGAT+TGG | 0.401499 | 1.1:+2569582 | MS.gene24319:CDS |
| CTGTTGAATCTGGGTGTGCC+TGG | 0.408185 | 1.1:+2567648 | MS.gene24319:CDS |
| TCTGATCATGAAACTCTTCA+TGG | 0.408689 | 1.1:-2569345 | None:intergenic |
| AGTGATCTTACAACGTATCT+TGG | 0.410668 | 1.1:+2567676 | MS.gene24319:CDS |
| ATTCCAGTAAAATCTCTTGA+TGG | 0.413383 | 1.1:+2569694 | MS.gene24319:CDS |
| GTGTGGCTTGAGATTGTGTT+CGG | 0.447874 | 1.1:-2567741 | None:intergenic |
| CAGGCACACCCAGATTCAAC+AGG | 0.452283 | 1.1:-2567647 | None:intergenic |
| CAAAGTGGTGTAGATGGAAA+TGG | 0.454103 | 1.1:+2567620 | MS.gene24319:CDS |
| GTTCAGATTTACATGGTTGA+GGG | 0.460325 | 1.1:+2567566 | None:intergenic |
| TGATCAGACATTTGCTCCAC+AGG | 0.463827 | 1.1:+2569390 | MS.gene24319:CDS |
| AGTTCAGATTTACATGGTTG+AGG | 0.468878 | 1.1:+2567565 | None:intergenic |
| TTCCATCAGCGAGGGATTGG+AGG | 0.477699 | 1.1:+2569585 | MS.gene24319:CDS |
| GCAGGCAGCTCCAGTGCTAG+TGG | 0.489009 | 1.1:+2569439 | MS.gene24319:CDS |
| CGAACAATCTAACAGCTTTG+AGG | 0.489350 | 1.1:+2569969 | MS.gene24319:CDS |
| ATGGTTTGCCTGTTGAATCT+GGG | 0.491828 | 1.1:+2567639 | MS.gene24319:CDS |
| CAATCCCTCGCTGATGGAAG+AGG | 0.507485 | 1.1:-2569581 | None:intergenic |
| TTGTAAGATCACTTTGCGCC+AGG | 0.512310 | 1.1:-2567666 | None:intergenic |
| GATTATAGTGACGGTAGGGC+AGG | 0.515021 | 1.1:+2569421 | MS.gene24319:CDS |
| GTAGAAGTTCCGATGGATCA+TGG | 0.515239 | 1.1:+2569527 | MS.gene24319:CDS |
| TTTATATGACTCACGGGTCA+AGG | 0.515592 | 1.1:-2570080 | None:intergenic |
| GTGAAGTCAAAGATAGCTCT+AGG | 0.521233 | 1.1:+2569944 | MS.gene24319:CDS |
| GAATGAGGTTGATGAGAAGC+AGG | 0.521334 | 1.1:+2569729 | MS.gene24319:CDS |
| TCATGAAACTCTTCATGGGC+AGG | 0.521376 | 1.1:-2569340 | None:intergenic |
| ACTATCACTTCCACTAGCAC+TGG | 0.522218 | 1.1:-2569449 | None:intergenic |
| ACCCTCCAATCCCTCGCTGA+TGG | 0.524742 | 1.1:-2569587 | None:intergenic |
| AACATTGATGAGAAATCTGA+AGG | 0.543296 | 1.1:+2570033 | MS.gene24319:CDS |
| AGCAGAAGTAGAAGTTCCGA+TGG | 0.544025 | 1.1:+2569520 | MS.gene24319:CDS |
| TCTTGTCAAAATGCGGTCAC+AGG | 0.545559 | 1.1:+2567715 | MS.gene24319:CDS |
| GAAAGTAACAGTAGCGACAG+TGG | 0.556540 | 1.1:+2569472 | MS.gene24319:CDS |
| ATCTAAAGGTAAACATATGA+GGG | 0.565450 | 1.1:+2569996 | MS.gene24319:CDS |
| AGCTTTGAGGAACTATCTAA+AGG | 0.566358 | 1.1:+2569982 | MS.gene24319:CDS |
| CTGATCATGAAACTCTTCAT+GGG | 0.568087 | 1.1:-2569344 | None:intergenic |
| TGGAAAATCTACGCAGAATG+AGG | 0.569803 | 1.1:+2569714 | MS.gene24319:CDS |
| AGCGACAGTGGAAGTGACAG+TGG | 0.584113 | 1.1:+2569484 | MS.gene24319:CDS |
| TCCATCAGCGAGGGATTGGA+GGG | 0.593348 | 1.1:+2569586 | MS.gene24319:CDS |
| ATATGATTATCAACAGCCCC+AGG | 0.594026 | 1.1:+2569879 | MS.gene24319:CDS |
| AAAATATGCAGAAGAGACAA+AGG | 0.596330 | 1.1:+2569849 | MS.gene24319:CDS |
| ACTCTCACTCCATGATCCAT+CGG | 0.596420 | 1.1:-2569536 | None:intergenic |
| GTATAATCTTTGCGCTCCTG+GGG | 0.596744 | 1.1:-2569895 | None:intergenic |
| AGGAGCGCAAAGATTATACA+AGG | 0.614784 | 1.1:+2569899 | MS.gene24319:CDS |
| CTAAGAATCTTGTCAAAATG+CGG | 0.624992 | 1.1:+2567708 | MS.gene24319:CDS |
| GGGATTGGAGGGTACTGATG+AGG | 0.640194 | 1.1:+2569597 | MS.gene24319:CDS |
| GATCAGACATTTGCTCCACA+TGG | 0.640613 | 1.1:+2569361 | MS.gene24319:CDS |
| AGCTTTGAACAGCATCAAAG+TGG | 0.644455 | 1.1:+2567605 | MS.gene24319:CDS |
| GATACCTCTTCCATCAGCGA+GGG | 0.647002 | 1.1:+2569577 | MS.gene24319:CDS |
| CAGACATTTGCTCCACAGGG+AGG | 0.660250 | 1.1:+2569394 | MS.gene24319:CDS |
| TGGAGTGAGAGTAGTAGTGA+CGG | 0.666612 | 1.1:+2569547 | MS.gene24319:CDS |
| GATCAGACATTTGCTCCACA+GGG | 0.681606 | 1.1:+2569391 | MS.gene24319:CDS |
| GTCTGATCATGAAGTCCATG+TGG | 0.692214 | 1.1:-2569376 | None:intergenic |
| TGATACCTCTTCCATCAGCG+AGG | 0.704191 | 1.1:+2569576 | MS.gene24319:CDS |
| CTATAATCAAAACCTCCCTG+TGG | 0.708081 | 1.1:-2569406 | None:intergenic |
| AGTGTGTGACAATACTTGTG+TGG | 0.743585 | 1.1:-2567758 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTAATATATTTTTTAGA+TGG | + | chr1.1:2567959-2567978 | MS.gene24319:intron | 10.0% |
| !! | ACTTTATGTGAAAATAAAAT+CGG | - | chr1.1:2568974-2568993 | None:intergenic | 15.0% |
| !!! | TTTTTCTTGTTAATTTATCA+CGG | + | chr1.1:2567883-2567902 | MS.gene24319:intron | 15.0% |
| !! | AAATTAACAAGAAAAAGGAT+AGG | - | chr1.1:2567879-2567898 | None:intergenic | 20.0% |
| !! | AATGGCAGAATATAAATAAT+AGG | + | chr1.1:2568498-2568517 | MS.gene24319:intron | 20.0% |
| !! | AATTAACAAGAAAAAGGATA+GGG | - | chr1.1:2567878-2567897 | None:intergenic | 20.0% |
| !! | ACAATGGAAATTAATATTGA+TGG | - | chr1.1:2568693-2568712 | None:intergenic | 20.0% |
| !! | ATCAATATTAATTTCCATTG+TGG | + | chr1.1:2568692-2568711 | MS.gene24319:intron | 20.0% |
| !! | GTGATAAATTAACAAGAAAA+AGG | - | chr1.1:2567884-2567903 | None:intergenic | 20.0% |
| !!! | GTTAATTGTCTTATTGTTAT+TGG | - | chr1.1:2568784-2568803 | None:intergenic | 20.0% |
| !!! | TAATGATTTTTATTTTGCTC+AGG | + | chr1.1:2568175-2568194 | MS.gene24319:intron | 20.0% |
| !!! | TATATTTTTTAGATGGTAAG+TGG | + | chr1.1:2567966-2567985 | MS.gene24319:intron | 20.0% |
| !!! | TTTTTATTGTAACATTTCCT+AGG | + | chr1.1:2568620-2568639 | MS.gene24319:intron | 20.0% |
| ! | AGTGCACCTTAAATAAATTA+TGG | - | chr1.1:2569038-2569057 | None:intergenic | 25.0% |
| ! | ATCTAAAGGTAAACATATGA+GGG | + | chr1.1:2569996-2570015 | MS.gene24319:CDS | 25.0% |
| ! | CTAGTGTTAAAAGTCTAAAT+AGG | + | chr1.1:2568906-2568925 | MS.gene24319:intron | 25.0% |
| ! | CTTCTAAATGAATTGATTAG+TGG | + | chr1.1:2568441-2568460 | MS.gene24319:intron | 25.0% |
| ! | GTGCACCTTAAATAAATTAT+GGG | - | chr1.1:2569037-2569056 | None:intergenic | 25.0% |
| ! | TAAATAGTCTAATAGCTACA+TGG | + | chr1.1:2569190-2569209 | MS.gene24319:intron | 25.0% |
| ! | TAAATGAATTGATTAGTGGT+GGG | + | chr1.1:2568445-2568464 | MS.gene24319:intron | 25.0% |
| ! | TATCTAAAGGTAAACATATG+AGG | + | chr1.1:2569995-2570014 | MS.gene24319:CDS | 25.0% |
| ! | TTGAATTTAAAGAGAATGAG+AGG | - | chr1.1:2569279-2569298 | None:intergenic | 25.0% |
| !! | AGACAATATTTTCAAAGACA+TGG | - | chr1.1:2567834-2567853 | None:intergenic | 25.0% |
| !! | TTTTCTAACTCTATCAGAAA+TGG | - | chr1.1:2569833-2569852 | None:intergenic | 25.0% |
| !!! | AAGGAGTTTGTTTTATGAAA+GGG | + | chr1.1:2569918-2569937 | MS.gene24319:CDS | 25.0% |
| !!! | ATAATAGGATTAGCTATTCT+TGG | + | chr1.1:2568513-2568532 | MS.gene24319:intron | 25.0% |
| !!! | TAATAGGATTAGCTATTCTT+GGG | + | chr1.1:2568514-2568533 | MS.gene24319:intron | 25.0% |
| AAAATATGCAGAAGAGACAA+AGG | + | chr1.1:2569849-2569868 | MS.gene24319:CDS | 30.0% | |
| AACATTGATGAGAAATCTGA+AGG | + | chr1.1:2570033-2570052 | MS.gene24319:CDS | 30.0% | |
| AGAAATCTGAAGGAACAAAA+AGG | + | chr1.1:2570043-2570062 | MS.gene24319:CDS | 30.0% | |
| ATTATTGTGGAATATGGTAG+GGG | + | chr1.1:2568349-2568368 | MS.gene24319:intron | 30.0% | |
| ATTCCAGTAAAATCTCTTGA+TGG | + | chr1.1:2569694-2569713 | MS.gene24319:CDS | 30.0% | |
| CTAAATGAATTGATTAGTGG+TGG | + | chr1.1:2568444-2568463 | MS.gene24319:intron | 30.0% | |
| CTAAGAATCTTGTCAAAATG+CGG | + | chr1.1:2567708-2567727 | MS.gene24319:CDS | 30.0% | |
| GATTATTGTGGAATATGGTA+GGG | + | chr1.1:2568348-2568367 | MS.gene24319:intron | 30.0% | |
| TATTGAAAAAGACTCATCTG+AGG | + | chr1.1:2569777-2569796 | MS.gene24319:CDS | 30.0% | |
| TGATTATTGTGGAATATGGT+AGG | + | chr1.1:2568347-2568366 | MS.gene24319:intron | 30.0% | |
| TGTGTTAATGAGAACATACA+TGG | + | chr1.1:2567919-2567938 | MS.gene24319:intron | 30.0% | |
| TTGGGCCCATAATTTATTTA+AGG | + | chr1.1:2569029-2569048 | MS.gene24319:intron | 30.0% | |
| ! | AAAGTCTTTTACAGGTCAAA+TGG | - | chr1.1:2568863-2568882 | None:intergenic | 30.0% |
| ! | ACTCGCATTTATAACTTTTG+AGG | + | chr1.1:2568018-2568037 | MS.gene24319:intron | 30.0% |
| ! | ATCAAGAGATTTTACTGGAA+TGG | - | chr1.1:2569695-2569714 | None:intergenic | 30.0% |
| ! | CTCGCATTTATAACTTTTGA+GGG | + | chr1.1:2568019-2568038 | MS.gene24319:intron | 30.0% |
| ! | GTTAGGTTATGATTTTCTTC+AGG | - | chr1.1:2569319-2569338 | None:intergenic | 30.0% |
| ! | TAAGAGTGTGATAACAAGTA+AGG | - | chr1.1:2567802-2567821 | None:intergenic | 30.0% |
| ! | TAAGGAGTGTATAACAAGTA+AGG | - | chr1.1:2567784-2567803 | None:intergenic | 30.0% |
| ! | TCAAGAGATTTTACTGGAAT+GGG | - | chr1.1:2569694-2569713 | None:intergenic | 30.0% |
| ! | TTTCCATCAAGAGATTTTAC+TGG | - | chr1.1:2569700-2569719 | None:intergenic | 30.0% |
| ! | TTTTCACATAAAGTTAACCG+TGG | + | chr1.1:2568980-2568999 | MS.gene24319:intron | 30.0% |
| !! | TTTTGATTATAGTGACGGTA+GGG | + | chr1.1:2569417-2569436 | MS.gene24319:CDS | 30.0% |
| !!! | AGGAGTTTGTTTTATGAAAG+GGG | + | chr1.1:2569919-2569938 | MS.gene24319:CDS | 30.0% |
| !!! | CAAGGAGTTTGTTTTATGAA+AGG | + | chr1.1:2569917-2569936 | MS.gene24319:CDS | 30.0% |
| !!! | GCTTAGTTTTAAAGTCTTGA+CGG | + | chr1.1:2568118-2568137 | MS.gene24319:intron | 30.0% |
| AATTTATCACGGCTTGCATT+TGG | + | chr1.1:2567894-2567913 | MS.gene24319:intron | 35.0% | |
| AGTGATCTTACAACGTATCT+TGG | + | chr1.1:2567676-2567695 | MS.gene24319:CDS | 35.0% | |
| CAGATCTTCTCTAAATTCCA+AGG | - | chr1.1:2568591-2568610 | None:intergenic | 35.0% | |
| CTGATCATGAAACTCTTCAT+GGG | - | chr1.1:2569347-2569366 | None:intergenic | 35.0% | |
| GAAGGAACAAAAAGGTTGAA+AGG | + | chr1.1:2570051-2570070 | MS.gene24319:CDS | 35.0% | |
| GTAACGAAAAAAAGGGTTCT+AGG | - | chr1.1:2569115-2569134 | None:intergenic | 35.0% | |
| GTGCACTGTAACGAAAAAAA+GGG | - | chr1.1:2569122-2569141 | None:intergenic | 35.0% | |
| GTGTTAAATTACTCGTGTCT+AGG | + | chr1.1:2568238-2568257 | MS.gene24319:intron | 35.0% | |
| TAAATTACTCGTGTCTAGGT+TGG | + | chr1.1:2568242-2568261 | MS.gene24319:intron | 35.0% | |
| TATAGAACAGTACAGTAGAG+CGG | - | chr1.1:2568727-2568746 | None:intergenic | 35.0% | |
| TCTGATCATGAAACTCTTCA+TGG | - | chr1.1:2569348-2569367 | None:intergenic | 35.0% | |
| TGAAATTGGGGTGATTATTG+TGG | + | chr1.1:2568336-2568355 | MS.gene24319:intron | 35.0% | |
| TGACCTGTAAAAGACTTTCT+TGG | + | chr1.1:2568865-2568884 | MS.gene24319:intron | 35.0% | |
| TGTGCACTGTAACGAAAAAA+AGG | - | chr1.1:2569123-2569142 | None:intergenic | 35.0% | |
| TTATTGTGGAATATGGTAGG+GGG | + | chr1.1:2568350-2568369 | MS.gene24319:intron | 35.0% | |
| ! | AGATTTTACTGGAATGGGTA+AGG | - | chr1.1:2569689-2569708 | None:intergenic | 35.0% |
| ! | CACATAAGGTTTTCTGTGAA+TGG | + | chr1.1:2569139-2569158 | MS.gene24319:intron | 35.0% |
| ! | CTAGTATGCACGTTTTTGAA+GGG | - | chr1.1:2568315-2568334 | None:intergenic | 35.0% |
| ! | GAACCAAGAAAGTCTTTTAC+AGG | - | chr1.1:2568871-2568890 | None:intergenic | 35.0% |
| ! | TTTTCGTTACAGTGCACATA+AGG | + | chr1.1:2569125-2569144 | MS.gene24319:intron | 35.0% |
| !! | AGCTTTGAGGAACTATCTAA+AGG | + | chr1.1:2569982-2570001 | MS.gene24319:CDS | 35.0% |
| !! | CTTGGGTGTAGATTGATTTT+AGG | + | chr1.1:2568531-2568550 | MS.gene24319:intron | 35.0% |
| !! | TAGTATGCACGTTTTTGAAG+GGG | - | chr1.1:2568314-2568333 | None:intergenic | 35.0% |
| !!! | ACTGCAAGTGTGTCTTTTTT+GGG | + | chr1.1:2569011-2569030 | MS.gene24319:intron | 35.0% |
| !!! | GGAGGTTTTGATTATAGTGA+CGG | + | chr1.1:2569412-2569431 | MS.gene24319:CDS | 35.0% |
| !!! | GTGTAGATTGATTTTAGGAC+TGG | + | chr1.1:2568536-2568555 | MS.gene24319:intron | 35.0% |
| !!! | GTTTTGATTATAGTGACGGT+AGG | + | chr1.1:2569416-2569435 | MS.gene24319:CDS | 35.0% |
| !!! | TACTGCAAGTGTGTCTTTTT+TGG | + | chr1.1:2569010-2569029 | MS.gene24319:intron | 35.0% |
| !!! | TTTTGAAGGGGGTTTGTTAA+CGG | - | chr1.1:2568302-2568321 | None:intergenic | 35.0% |
| AATAGAATCAGGGACAAGCA+AGG | + | chr1.1:2568473-2568492 | MS.gene24319:intron | 40.0% | |
| ACGTGCATACTAGGTGAAAT+TGG | + | chr1.1:2568322-2568341 | MS.gene24319:intron | 40.0% | |
| ACTTGCAGTACTAGTATCCA+CGG | - | chr1.1:2569000-2569019 | None:intergenic | 40.0% | |
| AGATGGTAAGTGGTAACTAG+TGG | + | chr1.1:2567976-2567995 | MS.gene24319:intron | 40.0% | |
| AGTGTGTGACAATACTTGTG+TGG | - | chr1.1:2567761-2567780 | None:intergenic | 40.0% | |
| ATAAATGCCAAGCAACTGCT+AGG | + | chr1.1:2568081-2568100 | MS.gene24319:intron | 40.0% | |
| ATAGAATCAGGGACAAGCAA+GGG | + | chr1.1:2568474-2568493 | MS.gene24319:intron | 40.0% | |
| ATATGATTATCAACAGCCCC+AGG | + | chr1.1:2569879-2569898 | MS.gene24319:CDS | 40.0% | |
| ATCTGAGGAACTCCCTAAAA+TGG | + | chr1.1:2569792-2569811 | MS.gene24319:CDS | 40.0% | |
| CAAAGTGGTGTAGATGGAAA+TGG | + | chr1.1:2567620-2567639 | MS.gene24319:CDS | 40.0% | |
| CCTTCAAAAACGTGCATACT+AGG | + | chr1.1:2568313-2568332 | MS.gene24319:intron | 40.0% | |
| CGAACAATCTAACAGCTTTG+AGG | + | chr1.1:2569969-2569988 | MS.gene24319:CDS | 40.0% | |
| CGTGCATACTAGGTGAAATT+GGG | + | chr1.1:2568323-2568342 | MS.gene24319:intron | 40.0% | |
| CTATAATCAAAACCTCCCTG+TGG | - | chr1.1:2569409-2569428 | None:intergenic | 40.0% | |
| GGAACAAAAAGGTTGAAAGG+AGG | + | chr1.1:2570054-2570073 | MS.gene24319:CDS | 40.0% | |
| GGGGTGATTATTGTGGAATA+TGG | + | chr1.1:2568343-2568362 | MS.gene24319:intron | 40.0% | |
| GTGAAGTCAAAGATAGCTCT+AGG | + | chr1.1:2569944-2569963 | MS.gene24319:CDS | 40.0% | |
| GTGCATACTAGGTGAAATTG+GGG | + | chr1.1:2568324-2568343 | MS.gene24319:intron | 40.0% | |
| TAAATGCCAAGCAACTGCTA+GGG | + | chr1.1:2568082-2568101 | MS.gene24319:intron | 40.0% | |
| TAGGACAACTGTCAATTGCT+GGG | - | chr1.1:2568403-2568422 | None:intergenic | 40.0% | |
| TCAAGAAGATTGCAGAACCT+AGG | - | chr1.1:2568640-2568659 | None:intergenic | 40.0% | |
| TGATTCAGAGTTCAGACTGA+AGG | + | chr1.1:2568657-2568676 | MS.gene24319:intron | 40.0% | |
| TGGAAAATCTACGCAGAATG+AGG | + | chr1.1:2569714-2569733 | MS.gene24319:CDS | 40.0% | |
| TGTATAATCTTTGCGCTCCT+GGG | - | chr1.1:2569899-2569918 | None:intergenic | 40.0% | |
| TGTCCTAGCACTTAGTTAGT+TGG | + | chr1.1:2568416-2568435 | MS.gene24319:intron | 40.0% | |
| TTGTATAATCTTTGCGCTCC+TGG | - | chr1.1:2569900-2569919 | None:intergenic | 40.0% | |
| ! | AATGGTTTGCCTGTTGAATC+TGG | + | chr1.1:2567638-2567657 | MS.gene24319:CDS | 40.0% |
| ! | AGGAGCGCAAAGATTATACA+AGG | + | chr1.1:2569899-2569918 | MS.gene24319:CDS | 40.0% |
| ! | ATGGTTTGCCTGTTGAATCT+GGG | + | chr1.1:2567639-2567658 | MS.gene24319:CDS | 40.0% |
| ! | CCTAGTATGCACGTTTTTGA+AGG | - | chr1.1:2568316-2568335 | None:intergenic | 40.0% |
| !! | AGCTTTGAACAGCATCAAAG+TGG | + | chr1.1:2567605-2567624 | MS.gene24319:CDS | 40.0% |
| !! | AGTATGCACGTTTTTGAAGG+GGG | - | chr1.1:2568313-2568332 | None:intergenic | 40.0% |
| !! | TTGTAGTCAGCGCCATTTTA+GGG | - | chr1.1:2569807-2569826 | None:intergenic | 40.0% |
| !! | TTTGTAGTCAGCGCCATTTT+AGG | - | chr1.1:2569808-2569827 | None:intergenic | 40.0% |
| !!! | GATTTTAGGACTGGAGTAAG+TGG | + | chr1.1:2568545-2568564 | MS.gene24319:intron | 40.0% |
| ACTATCACTTCCACTAGCAC+TGG | - | chr1.1:2569452-2569471 | None:intergenic | 45.0% | |
| ACTCTCACTCCATGATCCAT+CGG | - | chr1.1:2569539-2569558 | None:intergenic | 45.0% | |
| AGCAGAAGTAGAAGTTCCGA+TGG | + | chr1.1:2569520-2569539 | MS.gene24319:CDS | 45.0% | |
| CAGATTTCTGCTTTGTGCTC+TGG | - | chr1.1:2569652-2569671 | None:intergenic | 45.0% | |
| CAGCATCAAAGTGGTGTAGA+TGG | + | chr1.1:2567614-2567633 | MS.gene24319:CDS | 45.0% | |
| CTAGGACAACTGTCAATTGC+TGG | - | chr1.1:2568404-2568423 | None:intergenic | 45.0% | |
| GAAAGTAACAGTAGCGACAG+TGG | + | chr1.1:2569472-2569491 | MS.gene24319:CDS | 45.0% | |
| GATCAGACATTTGCTCCACA+GGG | + | chr1.1:2569361-2569380 | MS.gene24319:CDS | 45.0% | |
| GATCAGACATTTGCTCCACA+TGG | + | chr1.1:2569361-2569380 | MS.gene24319:CDS | 45.0% | |
| GCTCCAACTAACTAAGTGCT+AGG | - | chr1.1:2568422-2568441 | None:intergenic | 45.0% | |
| GTAGAAGTTCCGATGGATCA+TGG | + | chr1.1:2569527-2569546 | MS.gene24319:CDS | 45.0% | |
| GTATAATCTTTGCGCTCCTG+GGG | - | chr1.1:2569898-2569917 | None:intergenic | 45.0% | |
| GTCAATTGCTGGGTTGTTAC+TGG | - | chr1.1:2568393-2568412 | None:intergenic | 45.0% | |
| GTCTGATCATGAAGTCCATG+TGG | - | chr1.1:2569379-2569398 | None:intergenic | 45.0% | |
| GTGGGAGCTCAATAGAATCA+GGG | + | chr1.1:2568463-2568482 | MS.gene24319:intron | 45.0% | |
| GTGTGGCTTGAGATTGTGTT+CGG | - | chr1.1:2567744-2567763 | None:intergenic | 45.0% | |
| TAGGACTGGAGTAAGTGGAA+GGG | + | chr1.1:2568550-2568569 | MS.gene24319:intron | 45.0% | |
| TCATGAAACTCTTCATGGGC+AGG | - | chr1.1:2569343-2569362 | None:intergenic | 45.0% | |
| TCTTGTCAAAATGCGGTCAC+AGG | + | chr1.1:2567715-2567734 | MS.gene24319:CDS | 45.0% | |
| TGATCAGACATTTGCTCCAC+AGG | + | chr1.1:2569360-2569379 | MS.gene24319:CDS | 45.0% | |
| TGGAGTGAGAGTAGTAGTGA+CGG | + | chr1.1:2569547-2569566 | MS.gene24319:CDS | 45.0% | |
| TTAGGACTGGAGTAAGTGGA+AGG | + | chr1.1:2568549-2568568 | MS.gene24319:intron | 45.0% | |
| TTGTAAGATCACTTTGCGCC+AGG | - | chr1.1:2567669-2567688 | None:intergenic | 45.0% | |
| !! | GAATGAGGTTGATGAGAAGC+AGG | + | chr1.1:2569729-2569748 | MS.gene24319:CDS | 45.0% |
| !! | TTCCAAGGACTCTAGAATCC+AGG | - | chr1.1:2568576-2568595 | None:intergenic | 45.0% |
| ACTCTTCATGGGCAGGTGTT+AGG | - | chr1.1:2569336-2569355 | None:intergenic | 50.0% | |
| AGTACAGTAGAGCGGAGCAA+AGG | - | chr1.1:2568719-2568738 | None:intergenic | 50.0% | |
| GATACCTCTTCCATCAGCGA+GGG | + | chr1.1:2569577-2569596 | MS.gene24319:CDS | 50.0% | |
| GATTATAGTGACGGTAGGGC+AGG | + | chr1.1:2569421-2569440 | MS.gene24319:CDS | 50.0% | |
| GGTGGGAGCTCAATAGAATC+AGG | + | chr1.1:2568462-2568481 | MS.gene24319:intron | 50.0% | |
| GTACAGTAGAGCGGAGCAAA+GGG | - | chr1.1:2568718-2568737 | None:intergenic | 50.0% | |
| TCAGGGACAAGCAAGGGAAA+TGG | + | chr1.1:2568480-2568499 | MS.gene24319:intron | 50.0% | |
| TCATTGCCCTAGCAGTTGCT+TGG | - | chr1.1:2568091-2568110 | None:intergenic | 50.0% | |
| TGATACCTCTTCCATCAGCG+AGG | + | chr1.1:2569576-2569595 | MS.gene24319:CDS | 50.0% | |
| AGCGACAGTGGAAGTGACAG+TGG | + | chr1.1:2569484-2569503 | MS.gene24319:CDS | 55.0% | |
| CAATCCCTCGCTGATGGAAG+AGG | - | chr1.1:2569584-2569603 | None:intergenic | 55.0% | |
| CAGACATTTGCTCCACAGGG+AGG | + | chr1.1:2569394-2569413 | MS.gene24319:CDS | 55.0% | |
| CAGGCACACCCAGATTCAAC+AGG | - | chr1.1:2567650-2567669 | None:intergenic | 55.0% | |
| CTCTTCCATCAGCGAGGGAT+TGG | + | chr1.1:2569582-2569601 | MS.gene24319:CDS | 55.0% | |
| CTGTTGAATCTGGGTGTGCC+TGG | + | chr1.1:2567648-2567667 | MS.gene24319:CDS | 55.0% | |
| TCCATCAGCGAGGGATTGGA+GGG | + | chr1.1:2569586-2569605 | MS.gene24319:CDS | 55.0% | |
| TTCCATCAGCGAGGGATTGG+AGG | + | chr1.1:2569585-2569604 | MS.gene24319:CDS | 55.0% | |
| !! | GGCCTGGATTCTAGAGTCCT+TGG | + | chr1.1:2568571-2568590 | MS.gene24319:intron | 55.0% |
| !! | GGGATTGGAGGGTACTGATG+AGG | + | chr1.1:2569597-2569616 | MS.gene24319:CDS | 55.0% |
| ACCCTCCAATCCCTCGCTGA+TGG | - | chr1.1:2569590-2569609 | None:intergenic | 60.0% | |
| AGCGGAGCAAAGGGCCACAA+TGG | - | chr1.1:2568709-2568728 | None:intergenic | 60.0% | |
| CTGGAGTAAGTGGAAGGGCC+TGG | + | chr1.1:2568555-2568574 | MS.gene24319:intron | 60.0% | |
| GCAGGCAGCTCCAGTGCTAG+TGG | + | chr1.1:2569439-2569458 | MS.gene24319:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 2567578 | 2570092 | 2567578 | ID=MS.gene24319 |
| chr1.1 | mRNA | 2567578 | 2570092 | 2567578 | ID=MS.gene24319.t1;Parent=MS.gene24319 |
| chr1.1 | exon | 2567578 | 2567765 | 2567578 | ID=MS.gene24319.t1.exon1;Parent=MS.gene24319.t1 |
| chr1.1 | CDS | 2567578 | 2567765 | 2567578 | ID=cds.MS.gene24319.t1;Parent=MS.gene24319.t1 |
| chr1.1 | exon | 2569312 | 2570092 | 2569312 | ID=MS.gene24319.t1.exon2;Parent=MS.gene24319.t1 |
| chr1.1 | CDS | 2569312 | 2570092 | 2569312 | ID=cds.MS.gene24319.t1;Parent=MS.gene24319.t1 |
| Gene Sequence |
| Protein sequence |
