AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24328

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24328.t1 MTR_1g021740 98.357 487 8 0 1 487 1 487 0.0 951
MS.gene24328.t1 MTR_8g069470 56.984 451 194 0 36 486 51 501 0.0 526
MS.gene24328.t1 MTR_5g033100 54.244 483 212 2 8 481 20 502 2.29e-178 510
MS.gene24328.t1 MTR_1g100180 49.798 496 239 4 1 487 1 495 2.30e-167 482
MS.gene24328.t1 MTR_5g032720 49.779 452 226 1 29 479 30 481 5.20e-157 455
MS.gene24328.t1 MTR_3g099700 50.862 464 227 1 20 482 31 494 1.13e-155 452
MS.gene24328.t1 MTR_2g088400 49.184 490 233 3 4 479 10 497 3.58e-155 451
MS.gene24328.t1 MTR_2g022980 48.354 486 242 3 3 479 8 493 6.51e-153 445
MS.gene24328.t1 MTR_4g048000 47.305 501 242 4 3 481 11 511 2.67e-150 439
MS.gene24328.t1 MTR_5g032750 49.160 476 232 3 6 480 16 482 1.56e-149 436
MS.gene24328.t1 MTR_7g087410 47.289 461 243 0 27 487 23 483 1.82e-148 433
MS.gene24328.t1 MTR_7g087400 46.957 460 241 2 21 480 18 474 1.32e-146 428
MS.gene24328.t1 MTR_3g099720 44.325 467 260 0 12 478 18 484 1.06e-141 416
MS.gene24328.t1 MTR_2g088400 48.667 450 215 3 4 439 10 457 3.77e-138 406
MS.gene24328.t1 MTR_6g027200 44.467 488 264 4 1 487 7 488 3.12e-137 405
MS.gene24328.t1 MTR_6g027190 48.261 460 234 3 22 480 13 469 1.20e-136 403
MS.gene24328.t1 MTR_7g087410 48.985 394 201 0 94 487 1 394 5.25e-132 388
MS.gene24328.t1 MTR_6g047610 41.929 477 273 3 3 479 1 473 3.08e-131 389
MS.gene24328.t1 MTR_7g087370 45.098 459 220 3 21 479 18 444 6.20e-130 385
MS.gene24328.t1 MTR_6g047640 42.348 477 272 2 3 479 1 474 6.80e-129 383
MS.gene24328.t1 MTR_6g047590 42.348 477 271 3 3 479 1 473 3.64e-125 373
MS.gene24328.t1 MTR_7g087430 46.891 386 205 0 94 479 1 386 1.67e-124 369
MS.gene24328.t1 MTR_5g090290 45.416 469 252 2 14 478 22 490 5.03e-123 371
MS.gene24328.t1 MTR_6g047640 40.252 477 263 3 3 479 1 455 1.24e-121 364
MS.gene24328.t1 MTR_8g063590 43.584 452 253 2 36 485 54 505 2.20e-113 344
MS.gene24328.t1 MTR_1g108810 39.186 467 274 5 12 470 6 470 2.19e-102 315
MS.gene24328.t1 MTR_6g081410 38.095 462 279 4 20 478 14 471 1.39e-99 308
MS.gene24328.t1 MTR_6g081780 39.224 464 267 6 20 476 14 469 4.25e-98 304
MS.gene24328.t1 MTR_5g087930 43.500 400 204 4 61 459 52 430 5.73e-96 298
MS.gene24328.t1 MTR_7g082810 38.235 442 272 1 36 476 21 462 4.07e-93 291
MS.gene24328.t1 MTR_6g066380 36.952 479 291 4 1 476 1 471 5.74e-93 291
MS.gene24328.t1 MTR_6g081300 37.862 449 272 3 36 480 11 456 1.29e-90 284
MS.gene24328.t1 MTR_6g081810 35.504 476 274 5 1 476 1 443 8.57e-87 274
MS.gene24328.t1 MTR_6g081390 38.031 447 268 5 37 478 15 457 1.46e-86 273
MS.gene24328.t1 MTR_1g108840 35.404 483 296 7 3 476 8 483 3.35e-85 271
MS.gene24328.t1 MTR_6g081240 37.220 446 274 5 27 468 1 444 1.29e-84 268
MS.gene24328.t1 MTR_8g106670 37.020 443 277 2 37 478 15 456 4.83e-84 268
MS.gene24328.t1 MTR_6g081400 35.938 448 276 5 37 478 18 460 2.76e-82 263
MS.gene24328.t1 MTR_6g081310 38.427 445 255 6 48 476 9 450 3.56e-81 259
MS.gene24328.t1 MTR_6g004220 34.802 454 292 3 36 487 24 475 8.08e-81 259
MS.gene24328.t1 MTR_1g108990 36.425 442 280 1 36 476 26 467 6.65e-80 257
MS.gene24328.t1 MTR_6g004220 34.943 435 281 2 36 468 31 465 1.34e-77 251
MS.gene24328.t1 MTR_2g078930 33.898 472 298 5 4 467 11 476 6.34e-76 247
MS.gene24328.t1 MTR_1g109060 34.842 442 287 1 36 476 25 466 1.20e-74 243
MS.gene24328.t1 MTR_2g078960 34.873 433 281 1 36 467 34 466 2.70e-73 239
MS.gene24328.t1 MTR_5g090280 37.530 413 223 4 94 478 1 406 6.04e-73 237
MS.gene24328.t1 MTR_2g078970 35.335 433 279 1 36 467 32 464 1.33e-72 238
MS.gene24328.t1 MTR_2g079020 33.641 434 285 2 36 467 38 470 1.35e-72 238
MS.gene24328.t1 MTR_1g109060 34.793 434 282 1 36 468 25 458 3.83e-72 237
MS.gene24328.t1 MTR_7g082800 34.197 386 253 1 94 478 1 386 9.70e-70 228
MS.gene24328.t1 MTR_5g010830 30.493 446 297 5 36 474 66 505 3.79e-61 209
MS.gene24328.t1 MTR_3g111020 28.814 472 327 4 12 477 26 494 2.23e-60 207
MS.gene24328.t1 MTR_1g101500 29.536 474 321 5 6 474 39 504 1.94e-59 204
MS.gene24328.t1 MTR_0039s0080 28.571 490 334 5 1 482 1 482 3.92e-59 203
MS.gene24328.t1 MTR_5g067460 28.125 448 311 4 36 477 56 498 4.65e-57 199
MS.gene24328.t1 MTR_6g004220 31.880 367 248 2 36 400 31 397 5.51e-50 177
MS.gene24328.t1 MTR_6g088805 26.237 465 334 4 10 473 7 463 4.80e-47 170
MS.gene24328.t1 MTR_2g078990 34.708 291 189 1 178 467 3 293 1.74e-46 164
MS.gene24328.t1 MTR_6g043810 27.494 451 313 5 36 474 24 472 2.93e-46 168
MS.gene24328.t1 MTR_6g043810 27.494 451 313 5 36 474 34 482 3.23e-46 168
MS.gene24328.t1 MTR_5g011540 27.880 434 311 1 42 473 50 483 1.13e-42 158
MS.gene24328.t1 MTR_8g102430 26.651 439 301 3 36 473 24 442 2.11e-42 156
MS.gene24328.t1 MTR_4g027920 25.652 460 319 5 26 472 147 596 1.54e-41 157
MS.gene24328.t1 MTR_6g004220 32.374 278 186 2 36 311 31 308 8.08e-38 141
MS.gene24328.t1 MTR_2g435930 23.109 476 349 3 18 476 2 477 2.21e-33 132
MS.gene24328.t1 MTR_2g079030 36.410 195 124 0 273 467 319 513 4.12e-32 129
MS.gene24328.t1 MTR_4g131290 50.820 61 30 0 107 167 13 73 3.90e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24328.t1 AT1G47530 67.925 477 150 2 6 482 8 481 0.0 657
MS.gene24328.t1 AT1G47530 71.465 389 111 0 94 482 1 389 0.0 572
MS.gene24328.t1 AT3G26590 54.725 455 206 0 30 484 39 493 0.0 516
MS.gene24328.t1 AT5G38030 53.347 478 217 2 13 484 16 493 3.17e-178 509
MS.gene24328.t1 AT1G23300 56.098 451 198 0 30 480 38 488 3.82e-177 507
MS.gene24328.t1 AT1G12950 54.646 452 205 0 30 481 61 512 6.00e-176 504
MS.gene24328.t1 AT4G00350 55.157 446 199 1 35 480 87 531 9.59e-172 494
MS.gene24328.t1 AT4G25640 51.782 477 221 3 14 482 4 479 3.78e-158 458
MS.gene24328.t1 AT4G25640 51.782 477 221 3 14 482 4 479 1.32e-157 457
MS.gene24328.t1 AT3G21690 49.149 470 236 2 13 479 27 496 2.25e-150 439
MS.gene24328.t1 AT3G26590 53.708 391 181 0 94 484 1 391 6.13e-150 434
MS.gene24328.t1 AT5G65380 48.712 466 238 1 20 484 21 486 2.97e-149 435
MS.gene24328.t1 AT1G61890 45.963 483 255 3 3 479 9 491 6.61e-146 427
MS.gene24328.t1 AT1G11670 47.368 456 239 1 28 482 42 497 1.38e-143 421
MS.gene24328.t1 AT4G25640 51.852 432 199 3 14 437 4 434 7.33e-143 418
MS.gene24328.t1 AT1G61890 45.992 474 250 3 3 470 9 482 8.39e-142 416
MS.gene24328.t1 AT1G33100 46.405 459 246 0 21 479 18 476 5.20e-141 414
MS.gene24328.t1 AT1G33110 46.070 458 247 0 22 479 22 479 2.00e-140 413
MS.gene24328.t1 AT5G44050 47.379 477 238 5 6 479 18 484 2.54e-140 412
MS.gene24328.t1 AT1G33090 46.288 458 246 0 22 479 22 479 5.63e-137 404
MS.gene24328.t1 AT5G10420 47.761 469 238 5 15 479 17 482 8.61e-137 404
MS.gene24328.t1 AT1G33080 44.978 458 252 0 22 479 22 479 1.72e-135 400
MS.gene24328.t1 AT4G21910 45.254 453 246 2 28 479 47 498 6.58e-134 397
MS.gene24328.t1 AT4G21910 45.254 453 246 2 28 479 47 498 6.58e-134 397
MS.gene24328.t1 AT4G21910 44.828 464 252 3 19 479 38 500 1.48e-133 396
MS.gene24328.t1 AT4G21910 44.828 464 252 3 19 479 38 500 1.48e-133 396
MS.gene24328.t1 AT3G59030 47.404 443 232 1 36 477 51 493 8.49e-133 394
MS.gene24328.t1 AT1G33080 45.133 452 248 0 22 473 22 473 1.00e-132 393
MS.gene24328.t1 AT4G21903 42.683 492 274 4 3 487 14 504 4.95e-129 384
MS.gene24328.t1 AT1G61890 44.921 443 238 3 3 439 9 451 2.10e-126 376
MS.gene24328.t1 AT4G21903 43.064 483 267 4 3 478 14 495 7.25e-126 377
MS.gene24328.t1 AT4G21903 45.570 395 214 1 94 487 1 395 5.15e-123 365
MS.gene24328.t1 AT5G17700 39.651 459 277 0 21 479 19 477 4.72e-116 351
MS.gene24328.t1 AT5G17700 39.651 459 277 0 21 479 19 477 4.72e-116 351
MS.gene24328.t1 AT3G03620 39.783 460 277 0 20 479 21 480 7.05e-115 348
MS.gene24328.t1 AT3G03620 39.783 460 277 0 20 479 21 480 7.05e-115 348
MS.gene24328.t1 AT1G33110 46.335 382 205 0 22 403 22 403 6.41e-111 334
MS.gene24328.t1 AT3G59030 46.175 366 196 1 36 400 51 416 5.63e-100 307
MS.gene24328.t1 AT1G73700 40.899 467 265 6 14 476 6 465 7.09e-98 303
MS.gene24328.t1 AT5G52450 41.084 443 259 2 37 478 28 469 1.13e-96 300
MS.gene24328.t1 AT2G34360 39.046 461 263 8 22 477 16 463 1.17e-88 280
MS.gene24328.t1 AT1G71140 36.771 446 273 3 36 476 26 467 4.04e-86 273
MS.gene24328.t1 AT5G17700 37.859 383 238 0 21 403 19 401 5.68e-85 268
MS.gene24328.t1 AT1G66760 32.359 479 307 5 2 476 4 469 4.42e-83 265
MS.gene24328.t1 AT3G23560 34.874 476 291 7 2 467 5 471 1.01e-81 261
MS.gene24328.t1 AT1G66760 32.272 471 302 5 2 468 4 461 9.58e-81 258
MS.gene24328.t1 AT1G66780 35.129 427 272 2 53 476 52 476 1.33e-79 256
MS.gene24328.t1 AT2G04080 32.823 457 300 2 32 487 23 473 2.40e-79 255
MS.gene24328.t1 AT1G15160 35.794 447 276 4 36 476 31 472 3.14e-79 255
MS.gene24328.t1 AT1G15150 35.281 445 281 4 36 476 31 472 4.20e-78 252
MS.gene24328.t1 AT2G04040 32.649 487 312 5 3 487 1 473 7.69e-78 251
MS.gene24328.t1 AT1G64820 33.781 447 281 5 38 476 31 470 9.77e-78 252
MS.gene24328.t1 AT2G34360 35.870 460 237 6 22 477 16 421 8.65e-77 247
MS.gene24328.t1 AT2G04070 33.403 476 307 3 16 487 4 473 1.13e-76 248
MS.gene24328.t1 AT2G04050 33.333 465 306 2 16 476 4 468 1.81e-75 245
MS.gene24328.t1 AT2G04080 32.648 438 294 1 32 468 23 460 2.33e-75 244
MS.gene24328.t1 AT1G15170 35.011 457 280 7 35 482 33 481 6.35e-75 244
MS.gene24328.t1 AT3G23550 33.623 461 299 4 14 467 3 463 1.30e-74 243
MS.gene24328.t1 AT2G04100 32.127 442 299 1 36 476 30 471 1.50e-70 233
MS.gene24328.t1 AT1G15180 35.088 456 279 7 36 482 35 482 1.33e-69 230
MS.gene24328.t1 AT2G04090 31.222 442 303 1 36 476 30 471 2.41e-69 229
MS.gene24328.t1 AT2G04100 31.881 436 296 1 36 470 30 465 4.25e-68 226
MS.gene24328.t1 AT1G15150 36.499 337 211 2 142 476 21 356 2.55e-65 215
MS.gene24328.t1 AT1G15170 36.311 347 210 4 142 482 21 362 1.02e-63 211
MS.gene24328.t1 AT1G58340 29.933 451 307 3 36 481 58 504 1.78e-60 207
MS.gene24328.t1 AT3G23560 33.252 409 254 7 2 400 5 404 1.45e-59 202
MS.gene24328.t1 AT1G66760 32.931 331 215 3 142 468 6 333 2.81e-58 196
MS.gene24328.t1 AT5G19700 26.907 472 332 3 16 474 4 475 2.04e-54 190
MS.gene24328.t1 AT1G66760 29.529 403 267 5 2 400 4 393 2.79e-53 184
MS.gene24328.t1 AT4G29140 26.609 466 341 1 10 474 30 495 6.37e-51 181
MS.gene24328.t1 AT2G38510 26.222 450 320 5 32 474 2 446 8.78e-47 169
MS.gene24328.t1 AT1G71870 25.103 486 336 6 8 472 1 479 1.41e-45 166
MS.gene24328.t1 AT4G23030 29.122 467 318 6 20 478 15 476 1.22e-44 164
MS.gene24328.t1 AT5G52050 25.942 451 315 2 36 473 35 479 1.56e-41 155
MS.gene24328.t1 AT5G49130 24.330 485 341 5 18 478 1 483 2.16e-39 149
MS.gene24328.t1 AT1G15180 35.094 265 161 4 142 400 21 280 1.51e-38 145
MS.gene24328.t1 AT4G22790 26.106 452 319 7 29 473 27 470 2.87e-35 137
MS.gene24328.t1 AT2G04066 38.843 121 74 0 356 476 43 163 2.56e-23 97.1

Find 116 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAATATTGAAACTTAAT+TGG 0.102187 1.1:+2693887 MS.gene24328:CDS
GAACTTGGAGCAGGTGATTT+TGG 0.171137 1.1:+2694714 MS.gene24328:CDS
TGATTTGTTATCAGGGTATT+TGG 0.215741 1.1:+2695337 MS.gene24328:intron
TGGTTTCGCCTTTGGTTTCT+TGG 0.217826 1.1:+2692171 MS.gene24328:CDS
TTGGGCTTCACATTTGGTTT+TGG 0.259862 1.1:+2695127 MS.gene24328:CDS
TCTAATATTGAAACTTAATT+GGG 0.293407 1.1:+2693888 MS.gene24328:CDS
TTAATGAAGTAACAATTATA+AGG 0.295058 1.1:-2695398 None:intergenic
GTTGAAAATTCTGTTATTGC+TGG 0.307891 1.1:+2692151 MS.gene24328:CDS
GTTATTGCTGGTTTCGCCTT+TGG 0.310201 1.1:+2692163 MS.gene24328:CDS
CATTGGATGCTGTATCTATT+TGG 0.321661 1.1:+2694244 MS.gene24328:CDS
CAGCAAGTTTAGTTGTTTCC+TGG 0.333817 1.1:-2694863 None:intergenic
CTTGTAGCTTACATAAATCT+TGG 0.340357 1.1:+2695067 MS.gene24328:CDS
TAGCTTCAGCTGTTATGTTA+TGG 0.343938 1.1:+2694064 MS.gene24328:CDS
GTGATGGCAGCTTGGAGTTT+TGG 0.345028 1.1:+2694169 MS.gene24328:intron
CAGAAAGCCGTGTGAGGAAG+TGG 0.348907 1.1:+2695530 MS.gene24328:CDS
ATGATATTGGTGGTGATAAC+AGG 0.354451 1.1:+2694198 MS.gene24328:CDS
ATATTGTTGGGCTTCACATT+TGG 0.357452 1.1:+2695121 MS.gene24328:CDS
GATAAAGAAGTTAAGATTGT+TGG 0.357514 1.1:-2692055 None:intergenic
CTTGGATCCTACTATGTTGT+TGG 0.361711 1.1:+2695085 MS.gene24328:CDS
TTACCAGCTGGGATATTGTT+GGG 0.365810 1.1:+2695109 MS.gene24328:CDS
AGTAACAATTATAAGGATTA+TGG 0.368933 1.1:-2695391 None:intergenic
GATTGCAGTATGAACATAAA+TGG 0.371621 1.1:+2694504 MS.gene24328:intron
GGAGTTGCCCAAATATAAAA+AGG 0.371768 1.1:-2692569 None:intergenic
TTGTTACTTCATTAACCAAC+TGG 0.380634 1.1:+2695406 MS.gene24328:CDS
AAACTTAATTGGGGCTTAGT+TGG 0.382505 1.1:+2693898 MS.gene24328:CDS
GGAAAGTCCTGGTGATGTTA+TGG 0.383348 1.1:+2693821 MS.gene24328:CDS
GGTGGTGATAACAGGGCATT+TGG 0.388031 1.1:+2694206 MS.gene24328:CDS
ACTCCAAGCACCATCTGATT+TGG 0.390160 1.1:-2693989 None:intergenic
TGTTATCAGGGTATTTGGTC+AGG 0.396483 1.1:+2695342 MS.gene24328:intron
GGTATTTGGTCAGGTCTGAT+TGG 0.397825 1.1:+2695351 MS.gene24328:CDS
ATTACCAGCTGGGATATTGT+TGG 0.407188 1.1:+2695108 MS.gene24328:CDS
GCATTCACTTCTACGTTTGT+TGG 0.412634 1.1:+2692094 MS.gene24328:CDS
TGGTAGGCACATTTGCTTTG+TGG 0.414802 1.1:+2693734 MS.gene24328:intron
AGGGCATTTGGCAAACCCTT+TGG 0.415152 1.1:+2694218 MS.gene24328:CDS
AAAGCATATGCAAATATTTG+TGG 0.422937 1.1:-2693763 None:intergenic
CTGAGAATTGTTCACAAAGT+TGG 0.426264 1.1:+2691998 MS.gene24328:CDS
TGGTTGGCAACAGTTGGGTA+TGG 0.428241 1.1:+2692430 MS.gene24328:intron
ACACTATGTGGGCAAGCATT+TGG 0.433648 1.1:+2692467 MS.gene24328:CDS
TGGATTATCTTGGTGGCTAC+AGG 0.437574 1.1:+2692533 MS.gene24328:CDS
TTAGGTGTTGCTATTGGAGC+TGG 0.443556 1.1:+2695034 MS.gene24328:intron
GGCAAACCCTTTGGTGCCAT+TGG 0.443751 1.1:+2694227 MS.gene24328:CDS
TAGGGTTTAACGTTGCAATA+AGG 0.443944 1.1:+2694547 MS.gene24328:CDS
TGTTACATGTACCTCTTAGT+TGG 0.444285 1.1:+2693863 MS.gene24328:CDS
GAATTTACATGCAAAGATCA+TGG 0.447765 1.1:+2692513 MS.gene24328:CDS
AGCAAGTTTAGTTGTTTCCT+GGG 0.447936 1.1:-2694862 None:intergenic
TATGTTGTTGGATTACCAGC+TGG 0.453772 1.1:+2695097 MS.gene24328:CDS
TGCAAAGTTCTCAGTGATAG+TGG 0.455040 1.1:+2694740 MS.gene24328:CDS
GCAGTATGAACATAAATGGT+TGG 0.464973 1.1:+2694508 MS.gene24328:intron
CAGTATGAACATAAATGGTT+GGG 0.468025 1.1:+2694509 MS.gene24328:intron
TCATGGTGGTTGATTGTCAT+TGG 0.473305 1.1:+2693943 MS.gene24328:CDS
GCAAAGATCATGGATTATCT+TGG 0.476538 1.1:+2692523 MS.gene24328:CDS
AGCCTACAACCAGTCTTGTC+TGG 0.477429 1.1:+2694915 MS.gene24328:CDS
TGGGATATGATGATCGCGCT+AGG 0.486272 1.1:+2694528 MS.gene24328:CDS
TGGTAATCCAACAACATAGT+AGG 0.486946 1.1:-2695092 None:intergenic
AGAAGTTAAGATTGTTGGAC+CGG 0.486994 1.1:-2692050 None:intergenic
AATATTAGAAGCCAACTAAG+AGG 0.488197 1.1:-2693874 None:intergenic
CAATTATTCTCAACACATCA+TGG 0.498659 1.1:+2693926 MS.gene24328:CDS
ATTTGGTCAGGTCTGATTGG+AGG 0.508178 1.1:+2695354 MS.gene24328:CDS
TCACCAAATCAGATGGTGCT+TGG 0.510768 1.1:+2693986 MS.gene24328:CDS
TCTTTATCTCAGTACTCGCT+TGG 0.519020 1.1:+2692070 MS.gene24328:CDS
GTGATGTTATGGATATCATT+AGG 0.521877 1.1:+2693832 MS.gene24328:CDS
GGTTGGCAACAGTTGGGTAT+GGG 0.521926 1.1:+2692431 MS.gene24328:intron
GTTGGGTATGGGAAGTGCAT+TGG 0.523324 1.1:+2692442 MS.gene24328:intron
AGTTGTTAGTACTATGATCA+TGG 0.530879 1.1:-2694796 None:intergenic
GATGAGATCGCAGAAGCTGC+TGG 0.531826 1.1:+2692617 MS.gene24328:CDS
TTCCTCCCCACTTCCTCACA+CGG 0.534562 1.1:-2695537 None:intergenic
TGCTGGTCATATAAGAATGA+TGG 0.538828 1.1:+2692490 MS.gene24328:CDS
TAGCTTGAAGTGAACAATTG+AGG 0.540499 1.1:-2694831 None:intergenic
GAGTGGAGTCGAAGAAGCTA+TGG 0.541517 1.1:+2692020 MS.gene24328:CDS
TTCAAGCTATGAGGTTGCCC+AGG 0.542260 1.1:+2694845 MS.gene24328:CDS
ACAGCATCCAATGGCACCAA+AGG 0.544225 1.1:-2694234 None:intergenic
AACCAGACAAGACTGGTTGT+AGG 0.545104 1.1:-2694917 None:intergenic
ATTGTTCACTTCAAGCTATG+AGG 0.547129 1.1:+2694836 MS.gene24328:CDS
CAAGATCGAGCTCGTTAACA+TGG 0.548496 1.1:-2692117 None:intergenic
TCTCTCACATCAATATCCAT+TGG 0.549511 1.1:+2694765 MS.gene24328:CDS
TGTGACTAACCAGACAAGAC+TGG 0.551439 1.1:-2694924 None:intergenic
GAAAGCCGTGTGAGGAAGTG+GGG 0.552917 1.1:+2695532 MS.gene24328:CDS
ACTCCCCTCTTGAAGCTCGT+TGG 0.555491 1.1:+2692587 MS.gene24328:CDS
AGAAAGCCGTGTGAGGAAGT+GGG 0.557799 1.1:+2695531 MS.gene24328:CDS
AAGATCATGGATTATCTTGG+TGG 0.557828 1.1:+2692526 MS.gene24328:CDS
GTATCAAATGAACTTGGAGC+AGG 0.561306 1.1:+2694705 MS.gene24328:CDS
AAGCCCAACAATATCCCAGC+TGG 0.562621 1.1:-2695112 None:intergenic
GTGCTTGGAGTGGATTCTCA+TGG 0.564381 1.1:+2694001 MS.gene24328:CDS
ATGTTGTTGGATTACCAGCT+GGG 0.564636 1.1:+2695098 MS.gene24328:CDS
GTGAGAGTATCAAATGAACT+TGG 0.567071 1.1:+2694699 MS.gene24328:CDS
TTGACATTGTTATCTAGTAG+AGG 0.570811 1.1:-2691935 None:intergenic
CTAATATTGAAACTTAATTG+GGG 0.574308 1.1:+2693889 MS.gene24328:CDS
ACAAGCACAAAGGAAAGTCC+TGG 0.574888 1.1:+2693810 MS.gene24328:CDS
AAATCAGATGGTGCTTGGAG+TGG 0.576701 1.1:+2693991 MS.gene24328:CDS
GGGATATGATGATCGCGCTA+GGG 0.580089 1.1:+2694529 MS.gene24328:CDS
TGTGGGCAAGCATTTGGTGC+TGG 0.581549 1.1:+2692473 MS.gene24328:CDS
CAGCATCCAATGGCACCAAA+GGG 0.581611 1.1:-2694233 None:intergenic
TTGGTACTTGATGATATTGG+TGG 0.583882 1.1:+2694188 MS.gene24328:CDS
GATCATGGCAACAACACCAA+TGG 0.586370 1.1:-2694781 None:intergenic
AGTGCATTGGAGACACTATG+TGG 0.586848 1.1:+2692455 MS.gene24328:CDS
TCCTAGTGTTGTTCATCATG+AGG 0.592021 1.1:+2691964 MS.gene24328:CDS
AATTGTTCACAAAGTTGGAG+TGG 0.593504 1.1:+2692003 MS.gene24328:CDS
AAGAAGCTATGGAAAATAGC+CGG 0.605436 1.1:+2692031 MS.gene24328:CDS
CTGTCCAACGAGCTTCAAGA+GGG 0.606132 1.1:-2692591 None:intergenic
GCTGGTCATATAAGAATGAT+GGG 0.606977 1.1:+2692491 MS.gene24328:CDS
TCCTCATGATGAACAACACT+AGG 0.609928 1.1:-2691965 None:intergenic
TAGAGGACTGTCGATAGCCA+TGG 0.613803 1.1:-2691918 None:intergenic
ATGATATCCATAACATCACC+AGG 0.617590 1.1:-2693828 None:intergenic
CAAATAGATACAGCATCCAA+TGG 0.632386 1.1:-2694243 None:intergenic
TCTGTCCAACGAGCTTCAAG+AGG 0.635922 1.1:-2692592 None:intergenic
AAAAGTTCTTACAAGCACAA+AGG 0.640238 1.1:+2693800 MS.gene24328:CDS
TTTACATACCAAGAAACCAA+AGG 0.654334 1.1:-2692179 None:intergenic
ATGAAGCAGAAAGCCGTGTG+AGG 0.654673 1.1:+2695524 MS.gene24328:CDS
TCATGATGAACAACACTAGG+AGG 0.658187 1.1:-2691962 None:intergenic
GTGTTGCTATTGGAGCTGGT+TGG 0.658329 1.1:+2695038 MS.gene24328:CDS
GTGCATTGGAGACACTATGT+GGG 0.665609 1.1:+2692456 MS.gene24328:CDS
ACTTTGTGAACAATTCTCAG+TGG 0.666761 1.1:-2691995 None:intergenic
TGATATTGGTGGTGATAACA+GGG 0.675304 1.1:+2694199 MS.gene24328:CDS
AGCCGTGTGAGGAAGTGGGG+AGG 0.676849 1.1:+2695535 MS.gene24328:CDS
TGTCCAACGAGCTTCAAGAG+GGG 0.697789 1.1:-2692590 None:intergenic
TTATTCTCAACACATCATGG+TGG 0.744685 1.1:+2693929 MS.gene24328:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATACATTTTTTTTTTTTTT+TGG - chr1.1:2692375-2692394 None:intergenic 10.0%
!!! TATAAAATTGTTTTTGTTTT+TGG + chr1.1:2692410-2692429 MS.gene24328:intron 10.0%
!!! TATATAGTATAATTTTTAGA+AGG + chr1.1:2695208-2695227 MS.gene24328:intron 10.0%
!! AAAAAGTTAATTTAAGTAGT+TGG + chr1.1:2693046-2693065 MS.gene24328:intron 15.0%
!! ATATTCCTATCATTTAAATT+TGG + chr1.1:2692659-2692678 MS.gene24328:intron 15.0%
!! ATTAAATTCAAGAGAAATAA+GGG - chr1.1:2695172-2695191 None:intergenic 15.0%
!! ATTTACAAGAGAAATATTTA+CGG - chr1.1:2692713-2692732 None:intergenic 15.0%
!! GAAAATTAATTTCATATCTT+TGG + chr1.1:2695488-2695507 MS.gene24328:intron 15.0%
!! TATTAAATTCAAGAGAAATA+AGG - chr1.1:2695173-2695192 None:intergenic 15.0%
!! TCAACTTAATTAATATTTGA+TGG + chr1.1:2694116-2694135 MS.gene24328:intron 15.0%
!! TCTAATATTGAAACTTAATT+GGG + chr1.1:2693888-2693907 MS.gene24328:CDS 15.0%
!! TTAATGAAGTAACAATTATA+AGG - chr1.1:2695401-2695420 None:intergenic 15.0%
!! TTCTAATATTGAAACTTAAT+TGG + chr1.1:2693887-2693906 MS.gene24328:CDS 15.0%
!!! ATATTTATTGTTTGTTAATG+AGG + chr1.1:2695248-2695267 MS.gene24328:intron 15.0%
!!! ATTAATTTTCAACAAACAAT+AGG - chr1.1:2695478-2695497 None:intergenic 15.0%
!!! TATTTTATCAATTTTCCTTT+TGG + chr1.1:2693714-2693733 MS.gene24328:intron 15.0%
!!! TTTTATAAATCATAAACTTG+AGG - chr1.1:2692397-2692416 None:intergenic 15.0%
!! AGTAACAATTATAAGGATTA+TGG - chr1.1:2695394-2695413 None:intergenic 20.0%
!! AGTGTTATGTAATAATAAAG+CGG - chr1.1:2692217-2692236 None:intergenic 20.0%
!! CTAATATTGAAACTTAATTG+GGG + chr1.1:2693889-2693908 MS.gene24328:CDS 20.0%
!! TAACTTACTAACTATAATGA+TGG - chr1.1:2693000-2693019 None:intergenic 20.0%
!! TTAAATTCAAGAGAAATAAG+GGG - chr1.1:2695171-2695190 None:intergenic 20.0%
!! TTAGTCCAAATTTAAATGAT+AGG - chr1.1:2692667-2692686 None:intergenic 20.0%
!!! AAATGTCTATCACTTTTATT+TGG - chr1.1:2694317-2694336 None:intergenic 20.0%
!!! AAATTGTTTTTGTTTTTGGT+TGG + chr1.1:2692414-2692433 MS.gene24328:intron 20.0%
!!! ACACTTATTTTTGTTCTTTA+AGG + chr1.1:2692232-2692251 MS.gene24328:intron 20.0%
!!! ATTGAATTTTGAAAATGTGA+TGG + chr1.1:2694153-2694172 MS.gene24328:intron 20.0%
!!! CCATTTTTTGCTAATTAAAA+GGG + chr1.1:2693175-2693194 MS.gene24328:intron 20.0%
!!! GATATTTATTGATTCAATAG+TGG + chr1.1:2693574-2693593 MS.gene24328:intron 20.0%
!!! GTTGTTACCTTTTTATATTT+GGG + chr1.1:2692562-2692581 MS.gene24328:CDS 20.0%
!!! TAAAACTATGATAATGACTT+GGG + chr1.1:2693421-2693440 MS.gene24328:intron 20.0%
!!! TAAATTGTTCACTTTAAAGA+AGG - chr1.1:2694612-2694631 None:intergenic 20.0%
!!! TCCATTTTTTGCTAATTAAA+AGG + chr1.1:2693174-2693193 MS.gene24328:intron 20.0%
!!! TGTTGTTACCTTTTTATATT+TGG + chr1.1:2692561-2692580 MS.gene24328:CDS 20.0%
!!! TTGTTACTATTTAGTTTGAA+GGG + chr1.1:2692747-2692766 MS.gene24328:intron 20.0%
! AAAGCATATGCAAATATTTG+TGG - chr1.1:2693766-2693785 None:intergenic 25.0%
! AAGAGAAATATTTACGGAAA+TGG - chr1.1:2692707-2692726 None:intergenic 25.0%
! GATAAAGAAGTTAAGATTGT+TGG - chr1.1:2692058-2692077 None:intergenic 25.0%
! GATCGTTCAATGTAAATTAA+CGG + chr1.1:2692876-2692895 MS.gene24328:intron 25.0%
! TTCAAAACTGAGCATTAATT+AGG + chr1.1:2694380-2694399 MS.gene24328:intron 25.0%
!! AAAACTATGATAATGACTTG+GGG + chr1.1:2693422-2693441 MS.gene24328:intron 25.0%
!! AAAGGGATAGTTAATTTGAA+GGG + chr1.1:2692945-2692964 MS.gene24328:intron 25.0%
!! CATTTAAAATTTCCTAGCAA+GGG - chr1.1:2693329-2693348 None:intergenic 25.0%
!! GTAAAACTATGATAATGACT+TGG + chr1.1:2693420-2693439 MS.gene24328:intron 25.0%
!! TAAAGGGATAGTTAATTTGA+AGG + chr1.1:2692944-2692963 MS.gene24328:intron 25.0%
!! TTATCAATTTTCCTTTTGGT+AGG + chr1.1:2693718-2693737 MS.gene24328:intron 25.0%
!! TTGCTAGGAAATTTTAAATG+CGG + chr1.1:2693329-2693348 MS.gene24328:intron 25.0%
!!! ATACCTATGATTTGTTATCA+GGG + chr1.1:2695330-2695349 MS.gene24328:intron 25.0%
!!! CCCTTTTAATTAGCAAAAAA+TGG - chr1.1:2693178-2693197 None:intergenic 25.0%
!!! CTTGTTACTATTTAGTTTGA+AGG + chr1.1:2692746-2692765 MS.gene24328:intron 25.0%
!!! GCATTTGTTGTTACTATTTT+AGG + chr1.1:2695016-2695035 MS.gene24328:intron 25.0%
!!! TATACCTATGATTTGTTATC+AGG + chr1.1:2695329-2695348 MS.gene24328:intron 25.0%
AAAAGTTCTTACAAGCACAA+AGG + chr1.1:2693800-2693819 MS.gene24328:CDS 30.0%
AATATTAGAAGCCAACTAAG+AGG - chr1.1:2693877-2693896 None:intergenic 30.0%
ACAATGAGAATTTGGAGAAA+GGG - chr1.1:2694274-2694293 None:intergenic 30.0%
AGTTGTTAGTACTATGATCA+TGG - chr1.1:2694799-2694818 None:intergenic 30.0%
ATAAAAATTTGCAGCGTAAC+TGG + chr1.1:2693260-2693279 MS.gene24328:intron 30.0%
ATACCCTGATAACAAATCAT+AGG - chr1.1:2695336-2695355 None:intergenic 30.0%
ATTAACCAACTGGAAAAAAG+AGG + chr1.1:2695416-2695435 MS.gene24328:CDS 30.0%
CAATTATTCTCAACACATCA+TGG + chr1.1:2693926-2693945 MS.gene24328:CDS 30.0%
CAGTATGAACATAAATGGTT+GGG + chr1.1:2694509-2694528 MS.gene24328:intron 30.0%
CTTGTAGCTTACATAAATCT+TGG + chr1.1:2695067-2695086 MS.gene24328:CDS 30.0%
GAATTTACATGCAAAGATCA+TGG + chr1.1:2692513-2692532 MS.gene24328:CDS 30.0%
GATTGCAGTATGAACATAAA+TGG + chr1.1:2694504-2694523 MS.gene24328:intron 30.0%
GTGATGTTATGGATATCATT+AGG + chr1.1:2693832-2693851 MS.gene24328:CDS 30.0%
GTTGAAAATTCTGTTATTGC+TGG + chr1.1:2692151-2692170 MS.gene24328:CDS 30.0%
TCATTGTGCTATAGAAGTTA+TGG + chr1.1:2694287-2694306 MS.gene24328:intron 30.0%
TCTATAGCACAATGAGAATT+TGG - chr1.1:2694282-2694301 None:intergenic 30.0%
TTATGTTCATACTGCAATCA+TGG - chr1.1:2694503-2694522 None:intergenic 30.0%
TTCATATCTTTGGATTTCAC+AGG + chr1.1:2695498-2695517 MS.gene24328:intron 30.0%
TTGACATTGTTATCTAGTAG+AGG - chr1.1:2691938-2691957 None:intergenic 30.0%
TTTACATACCAAGAAACCAA+AGG - chr1.1:2692182-2692201 None:intergenic 30.0%
! ATTTTCATCACCAAATCAGA+TGG + chr1.1:2693979-2693998 MS.gene24328:CDS 30.0%
! CCATCTTTTCACTAGTTAAA+GGG + chr1.1:2692928-2692947 MS.gene24328:intron 30.0%
! GCATTTAAAATTTCCTAGCA+AGG - chr1.1:2693330-2693349 None:intergenic 30.0%
! GCTTGTAAGAACTTTTGAAT+TGG - chr1.1:2693796-2693815 None:intergenic 30.0%
! TAATGACCTGGTCAATTTTA+TGG - chr1.1:2693642-2693661 None:intergenic 30.0%
! TCCATCTTTTCACTAGTTAA+AGG + chr1.1:2692927-2692946 MS.gene24328:intron 30.0%
! TTGAAAAATGTTGAGTTGTG+TGG + chr1.1:2692280-2692299 MS.gene24328:intron 30.0%
! TTGTTACTTCATTAACCAAC+TGG + chr1.1:2695406-2695425 MS.gene24328:CDS 30.0%
!! GTTTTGGTACTTGATGATAT+TGG + chr1.1:2694185-2694204 MS.gene24328:CDS 30.0%
!! TGATTTGTTATCAGGGTATT+TGG + chr1.1:2695337-2695356 MS.gene24328:intron 30.0%
!!! ACTATTTTAGGTGTTGCTAT+TGG + chr1.1:2695028-2695047 MS.gene24328:intron 30.0%
AAACTTAATTGGGGCTTAGT+TGG + chr1.1:2693898-2693917 MS.gene24328:CDS 35.0%
AAAGTCACAATGAAGACGTA+CGG - chr1.1:2692834-2692853 None:intergenic 35.0%
AACTGAGCATTAATTAGGCT+TGG + chr1.1:2694385-2694404 MS.gene24328:intron 35.0%
AAGAAGCTATGGAAAATAGC+CGG + chr1.1:2692031-2692050 MS.gene24328:CDS 35.0%
AATTGTTCACAAAGTTGGAG+TGG + chr1.1:2692003-2692022 MS.gene24328:CDS 35.0%
ACTGAGCATTAATTAGGCTT+GGG + chr1.1:2694386-2694405 MS.gene24328:intron 35.0%
ACTTTGTGAACAATTCTCAG+TGG - chr1.1:2691998-2692017 None:intergenic 35.0%
AGAAGTTAAGATTGTTGGAC+CGG - chr1.1:2692053-2692072 None:intergenic 35.0%
ATATTGTTGGGCTTCACATT+TGG + chr1.1:2695121-2695140 MS.gene24328:CDS 35.0%
ATGATATCCATAACATCACC+AGG - chr1.1:2693831-2693850 None:intergenic 35.0%
ATTGTTCACTTCAAGCTATG+AGG + chr1.1:2694836-2694855 MS.gene24328:CDS 35.0%
CAAATAGATACAGCATCCAA+TGG - chr1.1:2694246-2694265 None:intergenic 35.0%
CACAATGAGAATTTGGAGAA+AGG - chr1.1:2694275-2694294 None:intergenic 35.0%
CATTGGATGCTGTATCTATT+TGG + chr1.1:2694244-2694263 MS.gene24328:CDS 35.0%
CCCTTTAACTAGTGAAAAGA+TGG - chr1.1:2692931-2692950 None:intergenic 35.0%
CTGAGAATTGTTCACAAAGT+TGG + chr1.1:2691998-2692017 MS.gene24328:CDS 35.0%
GCAGTATGAACATAAATGGT+TGG + chr1.1:2694508-2694527 MS.gene24328:intron 35.0%
GCTGGTCATATAAGAATGAT+GGG + chr1.1:2692491-2692510 MS.gene24328:CDS 35.0%
GGAGTTGCCCAAATATAAAA+AGG - chr1.1:2692572-2692591 None:intergenic 35.0%
TAAAAGGGTAGCTAGGATTA+GGG + chr1.1:2693190-2693209 MS.gene24328:intron 35.0%
TACATTGAACGATCGACATT+GGG - chr1.1:2692870-2692889 None:intergenic 35.0%
TAGCTTCAGCTGTTATGTTA+TGG + chr1.1:2694064-2694083 MS.gene24328:CDS 35.0%
TAGCTTGAAGTGAACAATTG+AGG - chr1.1:2694834-2694853 None:intergenic 35.0%
TAGGGTTTAACGTTGCAATA+AGG + chr1.1:2694547-2694566 MS.gene24328:CDS 35.0%
TCATCCAATTGCAGTATACA+AGG + chr1.1:2694427-2694446 MS.gene24328:intron 35.0%
TCTCTCACATCAATATCCAT+TGG + chr1.1:2694765-2694784 MS.gene24328:CDS 35.0%
TGCTAATTAAAAGGGTAGCT+AGG + chr1.1:2693183-2693202 MS.gene24328:intron 35.0%
TGCTGGTCATATAAGAATGA+TGG + chr1.1:2692490-2692509 MS.gene24328:CDS 35.0%
TGGTAATCCAACAACATAGT+AGG - chr1.1:2695095-2695114 None:intergenic 35.0%
TGTTACATGTACCTCTTAGT+TGG + chr1.1:2693863-2693882 MS.gene24328:CDS 35.0%
TTAAAAGGGTAGCTAGGATT+AGG + chr1.1:2693189-2693208 MS.gene24328:intron 35.0%
TTACATTGAACGATCGACAT+TGG - chr1.1:2692871-2692890 None:intergenic 35.0%
TTATTCTCAACACATCATGG+TGG + chr1.1:2693929-2693948 MS.gene24328:CDS 35.0%
TTCTCCTTGTATACTGCAAT+TGG - chr1.1:2694434-2694453 None:intergenic 35.0%
! AAGATCATGGATTATCTTGG+TGG + chr1.1:2692526-2692545 MS.gene24328:CDS 35.0%
! AGCAAGTTTAGTTGTTTCCT+GGG - chr1.1:2694865-2694884 None:intergenic 35.0%
! GCAAAGATCATGGATTATCT+TGG + chr1.1:2692523-2692542 MS.gene24328:CDS 35.0%
! TATGACTACAAGAGTACACA+AGG + chr1.1:2693143-2693162 MS.gene24328:intron 35.0%
! TTGGTACTTGATGATATTGG+TGG + chr1.1:2694188-2694207 MS.gene24328:CDS 35.0%
!! ATGATATTGGTGGTGATAAC+AGG + chr1.1:2694198-2694217 MS.gene24328:CDS 35.0%
!! GTGAGAGTATCAAATGAACT+TGG + chr1.1:2694699-2694718 MS.gene24328:CDS 35.0%
!! TGATATTGGTGGTGATAACA+GGG + chr1.1:2694199-2694218 MS.gene24328:CDS 35.0%
!!! ACTAACCTCTTTTTTCCAGT+TGG - chr1.1:2695424-2695443 None:intergenic 35.0%
AAAATTTCCTAGCAAGGGCA+AGG - chr1.1:2693324-2693343 None:intergenic 40.0%
AACTCAAAATGTCGATCGTC+TGG + chr1.1:2693100-2693119 MS.gene24328:intron 40.0%
AAGCAAATGTGCCTACCAAA+AGG - chr1.1:2693732-2693751 None:intergenic 40.0%
AATTGTGTGTTAGAACGCAC+GGG + chr1.1:2692303-2692322 MS.gene24328:intron 40.0%
ACCAGGTCATTACACGATAA+TGG + chr1.1:2693650-2693669 MS.gene24328:intron 40.0%
ATGTTGTTGGATTACCAGCT+GGG + chr1.1:2695098-2695117 MS.gene24328:CDS 40.0%
ATTACCAGCTGGGATATTGT+TGG + chr1.1:2695108-2695127 MS.gene24328:CDS 40.0%
CGGTCGAGATTATGACTATA+TGG + chr1.1:2692896-2692915 MS.gene24328:intron 40.0%
CTTGGATCCTACTATGTTGT+TGG + chr1.1:2695085-2695104 MS.gene24328:CDS 40.0%
GAATTGTGTGTTAGAACGCA+CGG + chr1.1:2692302-2692321 MS.gene24328:intron 40.0%
GCATTCACTTCTACGTTTGT+TGG + chr1.1:2692094-2692113 MS.gene24328:CDS 40.0%
GTATCAAATGAACTTGGAGC+AGG + chr1.1:2694705-2694724 MS.gene24328:CDS 40.0%
GTTTGAAGGGCTTAAATCGT+CGG + chr1.1:2692760-2692779 MS.gene24328:intron 40.0%
TATGTTGTTGGATTACCAGC+TGG + chr1.1:2695097-2695116 MS.gene24328:CDS 40.0%
TCATGATGAACAACACTAGG+AGG - chr1.1:2691965-2691984 None:intergenic 40.0%
TCATGGTGGTTGATTGTCAT+TGG + chr1.1:2693943-2693962 MS.gene24328:CDS 40.0%
TCCTCATGATGAACAACACT+AGG - chr1.1:2691968-2691987 None:intergenic 40.0%
TCTTTATCTCAGTACTCGCT+TGG + chr1.1:2692070-2692089 MS.gene24328:CDS 40.0%
TGCAAAGTTCTCAGTGATAG+TGG + chr1.1:2694740-2694759 MS.gene24328:CDS 40.0%
TGTGCACCATAAAATTGACC+AGG + chr1.1:2693633-2693652 MS.gene24328:intron 40.0%
TTACCAGCTGGGATATTGTT+GGG + chr1.1:2695109-2695128 MS.gene24328:CDS 40.0%
TTGAAAATGTGATGGCAGCT+TGG + chr1.1:2694161-2694180 MS.gene24328:intron 40.0%
! CAGCAAGTTTAGTTGTTTCC+TGG - chr1.1:2694866-2694885 None:intergenic 40.0%
! TCCTAGTGTTGTTCATCATG+AGG + chr1.1:2691964-2691983 MS.gene24328:CDS 40.0%
! TGAACCGAAGTTTTACCCTT+TGG - chr1.1:2693241-2693260 None:intergenic 40.0%
! TGTTATCAGGGTATTTGGTC+AGG + chr1.1:2695342-2695361 MS.gene24328:intron 40.0%
!! CACAACAATGCAAAAGTGCT+AGG - chr1.1:2694351-2694370 None:intergenic 40.0%
!! TTGGGCTTCACATTTGGTTT+TGG + chr1.1:2695127-2695146 MS.gene24328:CDS 40.0%
!!! GTTTTTGGTTGGCAACAGTT+GGG + chr1.1:2692425-2692444 MS.gene24328:intron 40.0%
!!! TGTTTTTGGTTGGCAACAGT+TGG + chr1.1:2692424-2692443 MS.gene24328:intron 40.0%
AAATCAGATGGTGCTTGGAG+TGG + chr1.1:2693991-2694010 MS.gene24328:CDS 45.0%
ACAAGCACAAAGGAAAGTCC+TGG + chr1.1:2693810-2693829 MS.gene24328:CDS 45.0%
ACACTATGTGGGCAAGCATT+TGG + chr1.1:2692467-2692486 MS.gene24328:CDS 45.0%
ACTCCAAGCACCATCTGATT+TGG - chr1.1:2693992-2694011 None:intergenic 45.0%
AGTGCATTGGAGACACTATG+TGG + chr1.1:2692455-2692474 MS.gene24328:CDS 45.0%
ATTTGGTCAGGTCTGATTGG+AGG + chr1.1:2695354-2695373 MS.gene24328:CDS 45.0%
CAAGATCGAGCTCGTTAACA+TGG - chr1.1:2692120-2692139 None:intergenic 45.0%
CCCGCTAATGTTCTCAAAGA+GGG + chr1.1:2693213-2693232 MS.gene24328:intron 45.0%
CCGCTAATGTTCTCAAAGAG+GGG + chr1.1:2693214-2693233 MS.gene24328:intron 45.0%
GATCATGGCAACAACACCAA+TGG - chr1.1:2694784-2694803 None:intergenic 45.0%
GCCATTATCGTGTAATGACC+TGG - chr1.1:2693654-2693673 None:intergenic 45.0%
GGGACCAAAGGGTAAAACTT+CGG + chr1.1:2693234-2693253 MS.gene24328:intron 45.0%
GGTATTTGGTCAGGTCTGAT+TGG + chr1.1:2695351-2695370 MS.gene24328:CDS 45.0%
GTGCATTGGAGACACTATGT+GGG + chr1.1:2692456-2692475 MS.gene24328:CDS 45.0%
TCACCAAATCAGATGGTGCT+TGG + chr1.1:2693986-2694005 MS.gene24328:CDS 45.0%
TGGTAGGCACATTTGCTTTG+TGG + chr1.1:2693734-2693753 MS.gene24328:intron 45.0%
TGTGACTAACCAGACAAGAC+TGG - chr1.1:2694927-2694946 None:intergenic 45.0%
TTCTCAAAGAGGGGACCAAA+GGG + chr1.1:2693223-2693242 MS.gene24328:intron 45.0%
! AACCAGACAAGACTGGTTGT+AGG - chr1.1:2694920-2694939 None:intergenic 45.0%
! CCCCTCTTTGAGAACATTAG+CGG - chr1.1:2693217-2693236 None:intergenic 45.0%
! CCCTCTTTGAGAACATTAGC+GGG - chr1.1:2693216-2693235 None:intergenic 45.0%
! GAACTTGGAGCAGGTGATTT+TGG + chr1.1:2694714-2694733 MS.gene24328:CDS 45.0%
! GGAAAGTCCTGGTGATGTTA+TGG + chr1.1:2693821-2693840 MS.gene24328:CDS 45.0%
! TGGATTATCTTGGTGGCTAC+AGG + chr1.1:2692533-2692552 MS.gene24328:CDS 45.0%
! TGGTTTCGCCTTTGGTTTCT+TGG + chr1.1:2692171-2692190 MS.gene24328:CDS 45.0%
!! GTTATTGCTGGTTTCGCCTT+TGG + chr1.1:2692163-2692182 MS.gene24328:CDS 45.0%
!! TTAGGTGTTGCTATTGGAGC+TGG + chr1.1:2695034-2695053 MS.gene24328:intron 45.0%
!!! CACATTTGGTTTTGGAGCAG+AGG + chr1.1:2695135-2695154 MS.gene24328:CDS 45.0%
AAGCCCAACAATATCCCAGC+TGG - chr1.1:2695115-2695134 None:intergenic 50.0%
ACAGCATCCAATGGCACCAA+AGG - chr1.1:2694237-2694256 None:intergenic 50.0%
AGAAAGCCGTGTGAGGAAGT+GGG + chr1.1:2695531-2695550 MS.gene24328:CDS 50.0%
ATGAAGCAGAAAGCCGTGTG+AGG + chr1.1:2695524-2695543 MS.gene24328:CDS 50.0%
CAGCATCCAATGGCACCAAA+GGG - chr1.1:2694236-2694255 None:intergenic 50.0%
CTGTCCAACGAGCTTCAAGA+GGG - chr1.1:2692594-2692613 None:intergenic 50.0%
GAGTGGAGTCGAAGAAGCTA+TGG + chr1.1:2692020-2692039 MS.gene24328:CDS 50.0%
GCCCGCTAATGTTCTCAAAG+AGG + chr1.1:2693212-2693231 MS.gene24328:intron 50.0%
GGGATATGATGATCGCGCTA+GGG + chr1.1:2694529-2694548 MS.gene24328:CDS 50.0%
GGTTGGCAACAGTTGGGTAT+GGG + chr1.1:2692431-2692450 MS.gene24328:intron 50.0%
GTTCTCAAAGAGGGGACCAA+AGG + chr1.1:2693222-2693241 MS.gene24328:intron 50.0%
TCTGTCCAACGAGCTTCAAG+AGG - chr1.1:2692595-2692614 None:intergenic 50.0%
TGGGATATGATGATCGCGCT+AGG + chr1.1:2694528-2694547 MS.gene24328:CDS 50.0%
TGGTTGGCAACAGTTGGGTA+TGG + chr1.1:2692430-2692449 MS.gene24328:intron 50.0%
TGTCCAACGAGCTTCAAGAG+GGG - chr1.1:2692593-2692612 None:intergenic 50.0%
TGTTAGAACGCACGGGTGTA+CGG + chr1.1:2692310-2692329 MS.gene24328:intron 50.0%
TTCAAGCTATGAGGTTGCCC+AGG + chr1.1:2694845-2694864 MS.gene24328:CDS 50.0%
! AGCCTACAACCAGTCTTGTC+TGG + chr1.1:2694915-2694934 MS.gene24328:CDS 50.0%
! AGGGCATTTGGCAAACCCTT+TGG + chr1.1:2694218-2694237 MS.gene24328:CDS 50.0%
! GGTGGTGATAACAGGGCATT+TGG + chr1.1:2694206-2694225 MS.gene24328:CDS 50.0%
! GTGATGGCAGCTTGGAGTTT+TGG + chr1.1:2694169-2694188 MS.gene24328:intron 50.0%
! GTGCTTGGAGTGGATTCTCA+TGG + chr1.1:2694001-2694020 MS.gene24328:CDS 50.0%
! GTGTTGCTATTGGAGCTGGT+TGG + chr1.1:2695038-2695057 MS.gene24328:CDS 50.0%
! GTTGGGTATGGGAAGTGCAT+TGG + chr1.1:2692442-2692461 MS.gene24328:intron 50.0%
!! AAGGGCAAGGTGTTGCGATA+TGG - chr1.1:2693311-2693330 None:intergenic 50.0%
!! AGGGCAAGGTGTTGCGATAT+GGG - chr1.1:2693310-2693329 None:intergenic 50.0%
AACTGGTACCAGATCCCCCA+TGG + chr1.1:2693277-2693296 MS.gene24328:intron 55.0%
ACTCCCCTCTTGAAGCTCGT+TGG + chr1.1:2692587-2692606 MS.gene24328:CDS 55.0%
ATATGGGGGCTGTACCATGG+GGG - chr1.1:2693294-2693313 None:intergenic 55.0%
CAGAAAGCCGTGTGAGGAAG+TGG + chr1.1:2695530-2695549 MS.gene24328:CDS 55.0%
CGATATGGGGGCTGTACCAT+GGG - chr1.1:2693296-2693315 None:intergenic 55.0%
GAAAGCCGTGTGAGGAAGTG+GGG + chr1.1:2695532-2695551 MS.gene24328:CDS 55.0%
GATATGGGGGCTGTACCATG+GGG - chr1.1:2693295-2693314 None:intergenic 55.0%
GATGAGATCGCAGAAGCTGC+TGG + chr1.1:2692617-2692636 MS.gene24328:CDS 55.0%
TTCCTCCCCACTTCCTCACA+CGG - chr1.1:2695540-2695559 None:intergenic 55.0%
!! GGCAAACCCTTTGGTGCCAT+TGG + chr1.1:2694227-2694246 MS.gene24328:CDS 55.0%
!! GGCAAGGTGTTGCGATATGG+GGG - chr1.1:2693308-2693327 None:intergenic 55.0%
!! GGGCAAGGTGTTGCGATATG+GGG - chr1.1:2693309-2693328 None:intergenic 55.0%
!! TGTGGGCAAGCATTTGGTGC+TGG + chr1.1:2692473-2692492 MS.gene24328:CDS 55.0%
CGCAACACCTTGCCCTTGCT+AGG + chr1.1:2693314-2693333 MS.gene24328:intron 60.0%
GCGATATGGGGGCTGTACCA+TGG - chr1.1:2693297-2693316 None:intergenic 60.0%
AGCCGTGTGAGGAAGTGGGG+AGG + chr1.1:2695535-2695554 MS.gene24328:CDS 65.0%
GGGCTGTACCATGGGGGATC+TGG - chr1.1:2693288-2693307 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 2691920 2695579 2691920 ID=MS.gene24328
chr1.1 mRNA 2691920 2695579 2691920 ID=MS.gene24328.t1;Parent=MS.gene24328
chr1.1 exon 2691920 2692192 2691920 ID=MS.gene24328.t1.exon1;Parent=MS.gene24328.t1
chr1.1 CDS 2691920 2692192 2691920 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2692443 2692638 2692443 ID=MS.gene24328.t1.exon2;Parent=MS.gene24328.t1
chr1.1 CDS 2692443 2692638 2692443 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2693740 2694085 2693740 ID=MS.gene24328.t1.exon3;Parent=MS.gene24328.t1
chr1.1 CDS 2693740 2694085 2693740 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2694179 2694265 2694179 ID=MS.gene24328.t1.exon4;Parent=MS.gene24328.t1
chr1.1 CDS 2694179 2694265 2694179 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2694512 2694568 2694512 ID=MS.gene24328.t1.exon5;Parent=MS.gene24328.t1
chr1.1 CDS 2694512 2694568 2694512 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2694698 2694936 2694698 ID=MS.gene24328.t1.exon6;Parent=MS.gene24328.t1
chr1.1 CDS 2694698 2694936 2694698 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2695038 2695156 2695038 ID=MS.gene24328.t1.exon7;Parent=MS.gene24328.t1
chr1.1 CDS 2695038 2695156 2695038 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2695351 2695437 2695351 ID=MS.gene24328.t1.exon8;Parent=MS.gene24328.t1
chr1.1 CDS 2695351 2695437 2695351 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
chr1.1 exon 2695520 2695579 2695520 ID=MS.gene24328.t1.exon9;Parent=MS.gene24328.t1
chr1.1 CDS 2695520 2695579 2695520 ID=cds.MS.gene24328.t1;Parent=MS.gene24328.t1
Gene Sequence

>MS.gene24328

ATGGCTATCGACAGTCCTCTACTAGATAACAATGTCAACTCTCCTCCTAGTGTTGTTCATCATGAGGAAGAGAAGCCACTGAGAATTGTTCACAAAGTTGGAGTGGAGTCGAAGAAGCTATGGAAAATAGCCGGTCCAACAATCTTAACTTCTTTATCTCAGTACTCGCTTGGTGCATTCACTTCTACGTTTGTTGGCCATGTTAACGAGCTCGATCTTGCAGCTTTTTCTGTTGAAAATTCTGTTATTGCTGGTTTCGCCTTTGGTTTCTTGGTATGTAAACTTTTCTCATCTCCGCTTTATTATTACATAACACTTATTTTTGTTCTTTAAGGAGACTAACGACAAAACTCGCACACATTGAAAAATGTTGAGTTGTGTGGAATTGTGTGTTAGAACGCACGGGTGTACGGTTTAGTTACACTTATCTTTAACTAGTACATTTGTTTTTACCAAAAAAAAAAAAAAATGTATCCTCAAGTTTATGATTTATAAAATTGTTTTTGTTTTTGGTTGGCAACAGTTGGGTATGGGAAGTGCATTGGAGACACTATGTGGGCAAGCATTTGGTGCTGGTCATATAAGAATGATGGGAATTTACATGCAAAGATCATGGATTATCTTGGTGGCTACAGGCATTTTGTTGTTACCTTTTTATATTTGGGCAACTCCCCTCTTGAAGCTCGTTGGACAGACTGATGAGATCGCAGAAGCTGCTGGTTAGTTACTTATATAAGTTATATTCCTATCATTTAAATTTGGACTAAAACTGAAGACAGAGAATCCATTTCCGTAAATATTTCTCTTGTAAATACACTACTTTCTACTTGTTACTATTTAGTTTGAAGGGCTTAAATCGTCGGTTGTCGAAGTTTTTTACAATCATTATAGTTAGTAAGTTCATTAAGCAGCCGTACGTCTTCATTGTGACTTTTGTATATGAAAAACCCAATGTCGATCGTTCAATGTAAATTAACGGTCGAGATTATGACTATATGGAATCAAGTTCCATCTTTTCACTAGTTAAAGGGATAGTTAATTTGAAGGGCTTGAATTGATCGTTGTCGAAATTTTCTACCATCATTATAGTTAGTAAGTTAATTTAAGTAGTTTTCTTCAAAAAAAAAAAAAGTTAATTTAAGTAGTTGGACGTCTTGCATTATGAATTAAGTATATCGAAAACTCAAAATGTCGATCGTCTGGTCTAAATTAACGATCGAGATTATGACTACAAGAGTACACAAGGAATCAAGTTCCATTTTTTGCTAATTAAAAGGGTAGCTAGGATTAGGGCCCGCTAATGTTCTCAAAGAGGGGACCAAAGGGTAAAACTTCGGTTCATAAAAATTTGCAGCGTAACTGGTACCAGATCCCCCATGGTACAGCCCCCATATCGCAACACCTTGCCCTTGCTAGGAAATTTTAAATGCGGATTAAAGTATAAGTACAAGATATTATCATATTAATAATGTAGCACTATAAATGCACTTGTTTGTACGAGTAAAACTATGATAATGACTTGGGGAACTTGTTATCTAGATGTGATATAATTTGTTACGACTTTATCTAACATACACAAGCAAAATATCTAACATTATATATGTATCTTTTTTACTATTCAATCTATAAATCACATTGTATCTCATTTAATTGTGATATTTATTGATTCAATAGTGGAAATTAGATTGTGCATGATACAAAACTTGTTTTACTTGTGCACCATAAAATTGACCAGGTCATTACACGATAATGGCTTGTGTGTTTGTTTCGTTGTTAGTTTCTTTTTTATATATTTATTTTATCAATTTTCCTTTTGGTAGGCACATTTGCTTTGTGGATGATACCACAAATATTTGCATATGCTTTGAACTTTCCAATTCAAAAGTTCTTACAAGCACAAAGGAAAGTCCTGGTGATGTTATGGATATCATTAGGTGTTTTAGTGTTACATGTACCTCTTAGTTGGCTTCTAATATTGAAACTTAATTGGGGCTTAGTTGGAGCTGCAATTATTCTCAACACATCATGGTGGTTGATTGTCATTGGTCAACTTTTGTACATTTTCATCACCAAATCAGATGGTGCTTGGAGTGGATTCTCATGGCTAGCATTTGCAGATTTGTTTAATTTTTTGAAACTTTCTTTAGCTTCAGCTGTTATGTTATGGTATATTTTCTCAAACTTTATATTTTCAATTCAACTTAATTAATATTTGATGGAAACTTTATATTGAATTGAATTTTGAAAATGTGATGGCAGCTTGGAGTTTTGGTACTTGATGATATTGGTGGTGATAACAGGGCATTTGGCAAACCCTTTGGTGCCATTGGATGCTGTATCTATTTGGTAAACCCTTTCTCCAAATTCTCATTGTGCTATAGAAGTTATGGTTTTCCAAATAAAAGTGATAGACATTTTCTATTTTGTTCCTAGCACTTTTGCATTGTTGTGTGATTGCAATTCAAAACTGAGCATTAATTAGGCTTGGGTTAGTCATTGTAAGCATATCATCCAATTGCAGTATACAAGGAGAACATGACAACAAAAGTTAAGATCAAGAATTGATATTGATGTGTGTTTCCATGATTGCAGTATGAACATAAATGGTTGGGATATGATGATCGCGCTAGGGTTTAACGTTGCAATAAGGTCATTATCGCTTTCTCTATTTCTTTTCTTGACAAACTTACCTTCTTTAAAGTGAACAATTTATTTTCTTTTCTTGAGTGAATAGTTAGTCGCAGTTTTCTATACTGATTATGTTTAATTTATGAACAGTGTGAGAGTATCAAATGAACTTGGAGCAGGTGATTTTGGAGCTGCAAAGTTCTCAGTGATAGTGGTTTCTCTCACATCAATATCCATTGGTGTTGTTGCCATGATCATAGTACTAACAACTAGAGATTACTTTCCTCAATTGTTCACTTCAAGCTATGAGGTTGCCCAGGAAACAACTAAACTTGCTGCTTTGCTTAGTATCACTGTACTTCTAAACAGCCTACAACCAGTCTTGTCTGGTTAGTCACAAAAAGATTGAAACATTGTTACTATAAATGTTTTTATGCATTGAAACATTGTTACTATAAATTAATTTATGCATTTGTTGTTACTATTTTAGGTGTTGCTATTGGAGCTGGTTGGCAATCTCTTGTAGCTTACATAAATCTTGGATCCTACTATGTTGTTGGATTACCAGCTGGGATATTGTTGGGCTTCACATTTGGTTTTGGAGCAGAGGTGATTTACTACCCCTTATTTCTCTTGAATTTAATACTACAACAATTTAAATATATAGTATAATTTTTAGAAGGATTCATTTAGTAGTTTAATATTTATTGTTTGTTAATGAGGACTATTTTGTAATTTTTTATTGTATTATCAACATAAATTTATTTGTTCTTACTTTTTTTATACCTATGATTTGTTATCAGGGTATTTGGTCAGGTCTGATTGGAGGCATAGCTGTGCAGACCATAATCCTTATAATTGTTACTTCATTAACCAACTGGAAAAAAGAGGTTAGTGCAATTCATTTTTGTATTAGCAAATAAATAACCTATTGTTTGTTGAAAATTAATTTCATATCTTTGGATTTCACAGGCTGATGAAGCAGAAAGCCGTGTGAGGAAGTGGGGAGGAACAATTTCAATTGAGAATTAA
Protein sequence

>MS.gene24328.t1

MAIDSPLLDNNVNSPPSVVHHEEEKPLRIVHKVGVESKKLWKIAGPTILTSLSQYSLGAFTSTFVGHVNELDLAAFSVENSVIAGFAFGFLLGMGSALETLCGQAFGAGHIRMMGIYMQRSWIILVATGILLLPFYIWATPLLKLVGQTDEIAEAAGTFALWMIPQIFAYALNFPIQKFLQAQRKVLVMLWISLGVLVLHVPLSWLLILKLNWGLVGAAIILNTSWWLIVIGQLLYIFITKSDGAWSGFSWLAFADLFNFLKLSLASAVMLCLEFWYLMILVVITGHLANPLVPLDAVSICMNINGWDMMIALGFNVAISVRVSNELGAGDFGAAKFSVIVVSLTSISIGVVAMIIVLTTRDYFPQLFTSSYEVAQETTKLAALLSITVLLNSLQPVLSGVAIGAGWQSLVAYINLGSYYVVGLPAGILLGFTFGFGAEGIWSGLIGGIAVQTIILIIVTSLTNWKKEADEAESRVRKWGGTISIEN