AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24457

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24457.t1 MTR_1g018510 97.481 397 10 0 78 474 332 728 0.0 798
MS.gene24457.t1 MTR_1g018510 100.000 75 0 0 6 80 1 75 2.12e-43 163
MS.gene24457.t1 MTR_3g102810 71.285 397 110 2 78 474 365 757 0.0 575
MS.gene24457.t1 MTR_3g102810 72.500 80 22 0 1 80 29 108 3.43e-34 136
MS.gene24457.t1 MTR_4g095360 61.461 397 141 5 78 473 371 756 1.56e-171 501
MS.gene24457.t1 MTR_4g095360 58.750 80 33 0 1 80 35 114 1.02e-25 111
MS.gene24457.t1 MTR_5g016120 57.789 398 155 5 78 473 376 762 7.22e-156 461
MS.gene24457.t1 MTR_5g016120 50.000 78 39 0 3 80 42 119 3.11e-16 82.0
MS.gene24457.t1 MTR_0047s0120 58.396 399 151 6 78 473 372 758 1.08e-151 450
MS.gene24457.t1 MTR_0047s0120 47.436 78 41 0 3 80 38 115 4.20e-15 78.6
MS.gene24457.t1 MTR_2g042130 50.873 401 178 6 78 474 390 775 3.81e-125 382
MS.gene24457.t1 MTR_8g021130 51.151 391 172 7 91 474 399 777 6.23e-123 377
MS.gene24457.t1 MTR_4g125180 50.129 389 176 5 90 474 380 754 6.30e-122 374
MS.gene24457.t1 MTR_7g075900 47.680 388 186 5 90 473 399 773 1.41e-112 350
MS.gene24457.t1 MTR_4g073540 46.455 409 200 6 66 469 371 765 2.03e-112 349
MS.gene24457.t1 MTR_4g073540 43.243 74 39 1 7 80 43 113 2.60e-12 69.7
MS.gene24457.t1 MTR_1g102350 46.373 386 192 5 90 473 406 778 8.25e-109 340
MS.gene24457.t1 MTR_1g102350 36.264 91 47 1 1 80 41 131 1.01e-14 77.4
MS.gene24457.t1 MTR_8g022870 46.923 390 187 7 90 469 394 773 5.09e-104 327
MS.gene24457.t1 MTR_8g022870 40.594 101 57 2 7 105 40 139 6.12e-15 77.8
MS.gene24457.t1 MTR_3g082200 42.670 382 198 6 90 469 267 629 7.59e-97 305
MS.gene24457.t1 MTR_3g082200 42.670 382 198 6 90 469 282 644 1.55e-96 305
MS.gene24457.t1 MTR_3g082200 42.670 382 198 6 90 469 405 767 1.27e-95 305
MS.gene24457.t1 MTR_4g103480 44.041 386 198 7 90 473 419 788 3.65e-95 305
MS.gene24457.t1 MTR_7g098070 42.105 380 200 5 90 469 400 759 8.32e-95 303
MS.gene24457.t1 MTR_5g055920 44.041 386 198 7 90 473 299 668 1.97e-94 300
MS.gene24457.t1 MTR_4g103490 43.523 386 200 7 90 473 416 785 1.30e-93 300
MS.gene24457.t1 MTR_4g103450 43.523 386 200 7 90 473 376 745 1.92e-93 299
MS.gene24457.t1 MTR_4g134320 41.732 381 202 5 90 470 404 764 1.18e-92 297
MS.gene24457.t1 MTR_7g098630 43.734 391 197 7 90 471 384 760 1.45e-92 300
MS.gene24457.t1 MTR_3g061110 41.299 385 201 7 90 469 386 750 6.22e-90 290
MS.gene24457.t1 MTR_4g103495 40.470 383 208 6 90 469 256 621 1.47e-88 283
MS.gene24457.t1 MTR_4g103430 41.299 385 208 6 90 472 401 769 1.83e-87 284
MS.gene24457.t1 MTR_5g011260 41.772 395 201 8 81 470 380 750 4.97e-87 282
MS.gene24457.t1 MTR_5g011270 41.519 395 202 8 81 470 380 750 2.43e-86 280
MS.gene24457.t1 MTR_5g011310 41.818 385 198 7 90 470 390 752 1.19e-84 276
MS.gene24457.t1 MTR_4g102400 41.985 393 194 10 90 474 389 755 3.20e-84 275
MS.gene24457.t1 MTR_5g085690 39.386 391 209 8 90 469 413 786 1.00e-82 271
MS.gene24457.t1 MTR_5g011340 41.558 385 199 7 90 470 387 749 2.88e-82 270
MS.gene24457.t1 MTR_5g011190 42.338 385 196 7 90 470 390 752 3.75e-82 269
MS.gene24457.t1 MTR_5g011280 41.162 396 203 10 81 470 383 754 6.30e-82 269
MS.gene24457.t1 MTR_5g011320 40.494 405 208 7 77 470 362 744 1.72e-81 267
MS.gene24457.t1 MTR_5g011370 42.078 385 197 7 90 470 410 772 8.00e-81 266
MS.gene24457.t1 MTR_4g103400 37.204 422 238 10 60 472 374 777 2.15e-80 265
MS.gene24457.t1 MTR_7g081750 38.942 416 211 11 79 469 398 795 1.32e-76 255
MS.gene24457.t1 MTR_8g072440 37.984 387 198 9 91 469 356 708 1.78e-76 253
MS.gene24457.t1 MTR_8g072440 37.984 387 198 9 91 469 398 750 2.49e-76 254
MS.gene24457.t1 MTR_4g103495 40.774 336 181 5 90 424 405 723 5.90e-76 253
MS.gene24457.t1 MTR_5g096750 38.961 385 204 9 90 470 406 763 1.35e-75 252
MS.gene24457.t1 MTR_2g018135 40.609 394 203 11 88 473 414 784 3.56e-75 251
MS.gene24457.t1 MTR_5g025010 39.164 383 201 8 91 469 361 715 1.01e-74 249
MS.gene24457.t1 MTR_5g025010 39.164 383 201 8 91 469 393 747 1.68e-74 249
MS.gene24457.t1 MTR_4g053630 39.948 383 206 7 90 469 289 650 2.34e-74 246
MS.gene24457.t1 MTR_4g053630 40.209 383 205 8 90 469 366 727 6.45e-74 247
MS.gene24457.t1 MTR_2g018125 39.642 391 206 10 91 473 417 785 9.42e-74 248
MS.gene24457.t1 MTR_7g081580 38.958 403 218 12 79 471 399 783 7.20e-73 245
MS.gene24457.t1 MTR_8g083220 38.281 384 207 8 91 470 416 773 3.38e-71 241
MS.gene24457.t1 MTR_7g081420 39.898 391 207 12 90 469 409 782 5.19e-71 240
MS.gene24457.t1 MTR_7g481600 39.012 405 215 12 79 471 399 783 1.67e-69 236
MS.gene24457.t1 MTR_4g053635 38.743 382 209 8 90 469 312 670 4.23e-68 230
MS.gene24457.t1 MTR_7g081380 36.620 426 211 13 79 469 403 804 4.33e-68 233
MS.gene24457.t1 MTR_7g081500 37.558 434 232 14 51 469 371 780 4.64e-68 232
MS.gene24457.t1 MTR_8g042670 37.173 382 221 8 91 470 268 632 7.45e-68 229
MS.gene24457.t1 MTR_8g024390 37.656 401 228 13 78 469 368 755 1.03e-67 231
MS.gene24457.t1 MTR_8g024380 39.523 377 207 10 100 469 394 756 1.41e-67 230
MS.gene24457.t1 MTR_8g024380 34.737 95 47 1 1 80 34 128 4.36e-12 68.9
MS.gene24457.t1 MTR_8g042670 37.401 377 217 8 91 465 392 751 5.13e-67 229
MS.gene24457.t1 MTR_1g078110 38.070 373 214 9 100 469 393 751 1.29e-66 228
MS.gene24457.t1 MTR_1g078110 31.915 94 50 1 1 80 34 127 2.57e-11 66.6
MS.gene24457.t1 MTR_2g049200 36.000 400 232 11 78 469 370 753 9.09e-65 223
MS.gene24457.t1 MTR_8g042710 36.772 378 221 8 91 465 395 757 1.60e-64 222
MS.gene24457.t1 MTR_8g024420 35.840 399 238 10 78 469 332 719 2.83e-64 221
MS.gene24457.t1 MTR_8g024420 34.483 87 50 1 1 80 1 87 4.53e-12 68.9
MS.gene24457.t1 MTR_7g118080 36.729 373 221 8 100 469 393 753 2.01e-63 219
MS.gene24457.t1 MTR_7g034380 36.504 389 215 10 83 469 331 689 1.11e-62 216
MS.gene24457.t1 MTR_3g104930 34.961 389 230 9 91 472 390 762 4.11e-62 216
MS.gene24457.t1 MTR_8g005710 35.644 404 222 11 73 469 324 696 9.27e-62 214
MS.gene24457.t1 MTR_8g027260 37.651 332 184 6 139 469 340 649 3.60e-61 211
MS.gene24457.t1 MTR_6g055570 36.883 385 200 11 94 469 377 727 3.74e-61 213
MS.gene24457.t1 MTR_1g006990 37.150 393 211 12 83 469 370 732 3.39e-59 207
MS.gene24457.t1 MTR_2g042650 36.141 368 205 8 108 469 297 640 1.64e-57 201
MS.gene24457.t1 MTR_3g114420 36.990 392 218 13 91 472 393 765 3.03e-57 202
MS.gene24457.t1 MTR_3g464790 35.204 392 213 11 91 472 372 732 4.71e-57 201
MS.gene24457.t1 MTR_1g007030 36.480 392 206 13 91 469 369 730 8.42e-57 201
MS.gene24457.t1 MTR_7g104200 36.979 384 208 14 91 469 385 739 4.31e-56 199
MS.gene24457.t1 MTR_8g006680 36.126 382 198 13 94 469 379 720 7.67e-56 198
MS.gene24457.t1 MTR_8g005300 36.126 382 198 13 94 469 379 720 7.67e-56 198
MS.gene24457.t1 MTR_8g005640 36.126 382 198 13 94 469 379 720 7.67e-56 198
MS.gene24457.t1 MTR_8g079900 35.787 394 217 11 81 469 279 641 9.09e-56 196
MS.gene24457.t1 MTR_8g079900 35.787 394 217 11 81 469 377 739 1.94e-55 197
MS.gene24457.t1 MTR_8g033150 34.987 383 217 11 90 469 369 722 3.39e-55 196
MS.gene24457.t1 MTR_8g033150 34.987 383 217 11 90 469 396 749 6.62e-55 196
MS.gene24457.t1 MTR_1g048110 35.450 378 201 15 100 469 386 728 1.00e-54 195
MS.gene24457.t1 MTR_8g024370 35.337 416 231 15 77 474 364 759 5.18e-54 193
MS.gene24457.t1 MTR_8g024370 36.471 85 49 1 1 80 33 117 1.96e-13 73.2
MS.gene24457.t1 MTR_7g079300 35.433 381 206 15 105 469 407 763 1.61e-53 192
MS.gene24457.t1 MTR_6g055410 33.947 380 200 9 94 469 377 709 1.84e-53 191
MS.gene24457.t1 MTR_7g075890 33.681 383 222 10 90 469 542 895 3.08e-51 187
MS.gene24457.t1 MTR_7g079310 34.204 383 210 15 105 469 403 761 8.54e-51 184
MS.gene24457.t1 MTR_3g010080 33.773 379 219 12 94 469 380 729 7.26e-50 181
MS.gene24457.t1 MTR_6g075370 40.000 275 140 8 188 460 424 675 9.83e-50 181
MS.gene24457.t1 MTR_1g079120 33.163 392 229 15 91 469 387 758 1.48e-49 181
MS.gene24457.t1 MTR_1g079120 35.632 87 48 1 1 79 38 124 4.75e-11 65.5
MS.gene24457.t1 MTR_2g044630 36.194 268 144 6 204 469 461 703 1.37e-40 155
MS.gene24457.t1 MTR_2g042640 33.333 330 181 8 108 434 318 611 8.97e-39 149
MS.gene24457.t1 MTR_4g126230 36.486 222 123 3 177 397 44 248 1.15e-37 138
MS.gene24457.t1 MTR_4g127480 34.219 301 151 13 188 469 539 811 2.51e-36 143
MS.gene24457.t1 MTR_3g452290 34.866 261 122 6 210 469 353 566 6.05e-35 137
MS.gene24457.t1 MTR_3g451220 34.866 261 122 6 210 469 353 566 6.05e-35 137
MS.gene24457.t1 MTR_3g114410 40.704 199 112 3 83 279 386 580 7.35e-35 137
MS.gene24457.t1 MTR_3g114140 34.586 266 152 8 170 430 173 421 8.16e-34 132
MS.gene24457.t1 MTR_8g042710 39.899 198 114 3 91 285 395 590 1.74e-33 134
MS.gene24457.t1 MTR_2g070260 37.056 197 101 6 248 442 1 176 2.96e-31 120
MS.gene24457.t1 MTR_4g132620 30.641 359 189 14 74 400 417 747 3.15e-31 127
MS.gene24457.t1 MTR_2g037850 30.435 414 224 19 93 469 425 811 4.71e-31 127
MS.gene24457.t1 MTR_8g089230 35.473 296 157 11 188 470 570 844 7.95e-31 126
MS.gene24457.t1 MTR_4g071560 39.801 201 106 4 91 282 328 522 1.13e-30 125
MS.gene24457.t1 MTR_5g044060 44.853 136 74 1 176 310 1 136 1.79e-29 114
MS.gene24457.t1 MTR_2g046740 44.444 162 73 6 188 336 562 719 8.11e-29 120
MS.gene24457.t1 MTR_5g011300 47.423 97 50 1 248 344 1 96 6.65e-22 90.5
MS.gene24457.t1 MTR_7g081660 37.755 196 103 6 278 471 374 552 1.19e-21 98.6
MS.gene24457.t1 MTR_4g118440 28.623 276 130 12 206 473 1 217 8.30e-20 88.2
MS.gene24457.t1 MTR_4g053665 53.425 73 32 1 207 279 1 71 1.94e-18 84.3
MS.gene24457.t1 MTR_7g097250 33.750 160 81 3 106 265 42 176 3.67e-18 82.4
MS.gene24457.t1 MTR_5g081130 30.233 172 106 5 299 469 12 170 5.01e-17 79.7
MS.gene24457.t1 MTR_8g027660 30.000 200 103 5 272 469 80 244 2.11e-16 79.3
MS.gene24457.t1 MTR_3g005755 47.887 71 36 1 238 307 236 306 2.53e-14 73.9
MS.gene24457.t1 MTR_7g079295 33.540 161 88 6 313 469 362 507 2.52e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24457.t1 AT5G67360 59.548 398 147 4 78 474 373 757 1.12e-165 486
MS.gene24457.t1 AT5G67360 58.750 80 33 0 1 80 36 115 6.25e-27 115
MS.gene24457.t1 AT2G05920 51.238 404 180 5 73 473 362 751 9.93e-128 388
MS.gene24457.t1 AT3G14067 49.873 393 177 5 90 473 388 769 4.11e-116 359
MS.gene24457.t1 AT3G14067 34.940 83 51 1 1 80 37 119 2.15e-11 66.6
MS.gene24457.t1 AT3G14240 45.013 391 195 6 90 469 386 767 4.79e-106 333
MS.gene24457.t1 AT3G14240 39.623 106 62 2 1 105 32 136 1.32e-12 70.5
MS.gene24457.t1 AT4G34980 46.056 393 196 6 83 469 374 756 1.11e-105 332
MS.gene24457.t1 AT4G34980 38.750 80 46 1 1 80 32 108 4.23e-13 72.0
MS.gene24457.t1 AT5G51750 44.110 399 208 7 78 473 390 776 1.11e-104 329
MS.gene24457.t1 AT5G51750 44.944 89 40 1 1 80 41 129 1.25e-14 77.0
MS.gene24457.t1 AT2G04160 45.288 382 190 6 90 469 404 768 1.85e-95 305
MS.gene24457.t1 AT1G04110 43.478 391 199 8 90 472 395 771 1.67e-92 297
MS.gene24457.t1 AT5G59810 43.478 391 199 6 80 469 403 772 9.99e-92 295
MS.gene24457.t1 AT1G01900 44.557 395 203 7 84 473 390 773 1.26e-86 281
MS.gene24457.t1 AT5G45650 41.282 390 199 8 91 472 422 789 8.39e-83 272
MS.gene24457.t1 AT5G45650 41.282 390 199 8 91 472 422 789 8.39e-83 272
MS.gene24457.t1 AT5G59120 39.535 387 205 8 84 469 367 725 7.53e-75 249
MS.gene24457.t1 AT5G59090 39.018 387 207 9 84 469 368 726 2.26e-74 248
MS.gene24457.t1 AT5G59090 39.018 387 207 9 84 469 366 724 2.50e-74 248
MS.gene24457.t1 AT5G59090 38.760 387 203 9 84 469 368 721 8.47e-73 244
MS.gene24457.t1 AT5G59100 37.317 410 221 12 68 469 354 735 9.10e-71 239
MS.gene24457.t1 AT5G58840 39.093 353 184 7 129 469 371 704 1.93e-69 234
MS.gene24457.t1 AT3G46850 37.532 389 208 11 84 469 376 732 4.10e-67 229
MS.gene24457.t1 AT5G58830 36.605 377 204 8 94 469 361 703 8.53e-66 225
MS.gene24457.t1 AT1G20160 37.468 395 211 12 91 472 352 723 1.18e-65 225
MS.gene24457.t1 AT1G20160 37.468 395 211 12 91 472 391 762 2.07e-65 225
MS.gene24457.t1 AT5G59130 36.842 380 206 10 91 469 338 684 6.86e-64 219
MS.gene24457.t1 AT5G59130 36.842 380 206 10 91 469 373 719 8.06e-64 220
MS.gene24457.t1 AT5G59130 36.842 380 206 10 91 469 377 723 8.12e-64 220
MS.gene24457.t1 AT3G46840 36.031 383 210 11 90 469 382 732 4.06e-63 218
MS.gene24457.t1 AT1G20150 37.984 387 217 11 91 468 395 767 2.45e-62 216
MS.gene24457.t1 AT5G59130 37.105 380 195 13 91 469 377 713 7.00e-61 212
MS.gene24457.t1 AT5G58820 35.233 386 204 10 90 469 353 698 3.84e-60 209
MS.gene24457.t1 AT4G26330 36.607 336 193 6 140 469 398 719 4.58e-60 209
MS.gene24457.t1 AT4G26330 36.607 336 193 6 140 469 412 733 5.39e-60 209
MS.gene24457.t1 AT5G45640 36.020 397 211 12 90 472 385 752 3.12e-59 207
MS.gene24457.t1 AT4G00230 34.439 392 226 11 81 469 378 741 1.57e-58 206
MS.gene24457.t1 AT5G59190 34.140 413 226 14 68 469 309 686 2.02e-54 194
MS.gene24457.t1 AT1G32970 36.119 371 208 9 104 470 376 721 1.21e-52 189
MS.gene24457.t1 AT5G03620 35.606 396 211 12 91 469 388 756 5.01e-52 188
MS.gene24457.t1 AT4G10520 32.086 374 228 7 98 470 395 743 2.22e-49 180
MS.gene24457.t1 AT4G10550 33.085 402 234 10 76 470 336 709 3.16e-49 179
MS.gene24457.t1 AT4G10550 33.085 402 234 10 76 470 336 709 3.16e-49 179
MS.gene24457.t1 AT4G10550 33.582 402 232 11 76 470 408 781 4.33e-49 180
MS.gene24457.t1 AT4G10550 33.582 402 232 11 76 470 392 765 4.94e-49 179
MS.gene24457.t1 AT1G66220 31.565 377 226 6 95 470 398 743 3.82e-48 177
MS.gene24457.t1 AT4G10540 33.666 401 234 10 76 470 388 762 4.04e-48 177
MS.gene24457.t1 AT5G11940 33.251 406 231 13 74 470 377 751 1.21e-47 176
MS.gene24457.t1 AT4G15040 34.565 379 200 13 101 469 343 683 1.96e-46 171
MS.gene24457.t1 AT4G15040 34.565 379 200 13 101 469 343 683 1.96e-46 171
MS.gene24457.t1 AT5G67090 32.796 372 210 12 95 460 378 715 1.57e-45 169
MS.gene24457.t1 AT5G67090 40.244 82 47 1 1 80 29 110 2.41e-12 69.7
MS.gene24457.t1 AT4G10510 33.000 400 238 11 76 470 378 752 1.92e-45 169
MS.gene24457.t1 AT4G10510 33.000 400 238 11 76 470 319 693 2.08e-45 169
MS.gene24457.t1 AT4G10510 33.000 400 238 11 76 470 334 708 2.26e-45 169
MS.gene24457.t1 AT4G10510 33.000 400 238 11 76 470 390 764 2.64e-45 169
MS.gene24457.t1 AT4G21640 36.875 320 172 11 160 474 436 730 3.44e-45 168
MS.gene24457.t1 AT4G21630 34.746 354 201 11 126 474 428 756 3.73e-45 168
MS.gene24457.t1 AT1G32960 34.853 373 211 12 104 470 418 764 4.32e-45 168
MS.gene24457.t1 AT4G21650 34.706 340 192 11 140 474 449 763 4.64e-45 168
MS.gene24457.t1 AT1G32950 32.688 413 244 13 64 470 325 709 2.17e-44 166
MS.gene24457.t1 AT1G32950 32.688 413 244 13 64 470 376 760 2.34e-44 166
MS.gene24457.t1 AT1G66210 32.283 381 223 9 94 470 400 749 7.87e-44 164
MS.gene24457.t1 AT4G21326 31.135 379 226 8 98 470 337 686 1.12e-43 164
MS.gene24457.t1 AT1G32940 33.957 374 215 9 103 470 363 710 2.01e-43 163
MS.gene24457.t1 AT1G32940 33.957 374 215 9 103 470 363 710 2.01e-43 163
MS.gene24457.t1 AT1G32940 34.571 350 204 7 122 470 436 761 2.77e-43 163
MS.gene24457.t1 AT4G10530 29.223 373 225 6 99 470 400 734 1.97e-39 152
MS.gene24457.t1 AT2G39850 32.993 294 165 7 189 469 489 763 2.95e-38 149
MS.gene24457.t1 AT4G21323 31.367 373 226 10 103 471 447 793 1.86e-36 143
MS.gene24457.t1 AT4G00230 39.698 199 112 4 81 279 378 568 4.25e-36 141
MS.gene24457.t1 AT2G19170 35.548 301 148 14 188 469 535 808 1.19e-35 141
MS.gene24457.t1 AT2G19170 35.548 301 148 14 188 469 535 808 1.19e-35 141
MS.gene24457.t1 AT4G30020 28.883 412 234 15 93 469 422 809 2.36e-34 137
MS.gene24457.t1 AT4G30020 28.883 412 234 15 93 469 422 809 2.36e-34 137
MS.gene24457.t1 AT4G30020 28.883 412 234 15 93 469 422 809 2.36e-34 137
MS.gene24457.t1 AT4G30020 28.883 412 234 15 93 469 422 809 2.36e-34 137
MS.gene24457.t1 AT1G30600 30.526 380 204 16 78 423 426 779 4.70e-33 133
MS.gene24457.t1 AT5G03620 41.451 193 104 3 91 279 388 575 1.16e-31 128
MS.gene24457.t1 AT1G32980 38.384 198 106 5 244 440 3 185 1.76e-31 120
MS.gene24457.t1 AT5G59110 39.548 177 94 4 296 471 2 166 2.29e-31 119
MS.gene24457.t1 AT1G62340 33.333 276 143 10 93 335 443 710 3.49e-30 125
MS.gene24457.t1 AT5G58840 41.975 162 82 2 129 279 371 531 4.16e-30 123
MS.gene24457.t1 AT5G44530 30.508 354 197 16 84 404 434 771 1.86e-26 113
MS.gene24457.t1 AT4G20430 39.130 161 83 4 188 336 573 730 4.27e-26 112
MS.gene24457.t1 AT4G20430 39.130 161 83 4 188 336 573 730 4.27e-26 112
MS.gene24457.t1 AT4G20430 39.130 161 83 4 188 336 549 706 4.54e-26 112
MS.gene24457.t1 AT5G44530 28.496 379 197 17 84 404 434 796 2.89e-22 100
MS.gene24457.t1 AT1G32940 40.506 158 85 3 122 279 436 584 3.17e-20 94.4
MS.gene24457.t1 AT1G20160 37.302 126 63 3 91 208 391 508 3.25e-12 68.9

Find 113 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTACTCCCTTTGATTT+TGG 0.109596 1.1:-4392933 MS.gene24457:CDS
ATCTTCGGTGTTAAACTATT+TGG 0.203516 1.1:+4393230 None:intergenic
AGGTGATCAGTGAATGTTTC+TGG 0.210634 1.1:+4394583 None:intergenic
CATAAACAAGACCAGGATTA+AGG 0.230119 1.1:+4392883 None:intergenic
GGTTTAGCTGCTATAGTTAA+AGG 0.248373 1.1:-4393062 MS.gene24457:CDS
CTATTGTATTCAACAATTAC+TGG 0.250742 1.1:+4392672 None:intergenic
TTGAAAGTGTTTCGGCTTCT+TGG 0.279593 1.1:+4394461 None:intergenic
CTGATACGAAGTGTAGTTTA+AGG 0.283901 1.1:+4392824 None:intergenic
CATTCACTGATCACCTTAAC+TGG 0.287049 1.1:-4394576 MS.gene24457:CDS
ATTTGTGGCTCAATGCCTTC+TGG 0.287369 1.1:-4392501 MS.gene24457:CDS
TTTGAACTTGTTAAAGAATC+AGG 0.291151 1.1:+4393548 None:intergenic
TGGTGGAATTGGAATGATTT+TGG 0.301625 1.1:-4393450 MS.gene24457:CDS
TTGGAAACTGCTTCGGGAAT+TGG 0.308269 1.1:-4392711 MS.gene24457:CDS
CAGTAATTGTTGAATACAAT+AGG 0.329037 1.1:-4392671 MS.gene24457:CDS
GTGAATTTCAACATTATATC+AGG 0.331745 1.1:-4393113 MS.gene24457:CDS
TGTTGCTTTGGAAACTGCTT+CGG 0.342679 1.1:-4392718 MS.gene24457:CDS
CCTTCTGGAACTAAGAGTTT+TGG 0.347374 1.1:-4392486 MS.gene24457:CDS
CTAACAAATGTGGGTACTTC+GGG 0.358412 1.1:-4392645 MS.gene24457:CDS
TAAGGAGGTGTATGAGAAGA+AGG 0.361785 1.1:-4392541 MS.gene24457:CDS
AAAGGGAGTAGCTGGTTTCC+CGG 0.390868 1.1:+4392941 None:intergenic
CAAGTCCAACTAAATGCAAT+TGG 0.390890 1.1:+4392423 None:intergenic
TGGAAATTCAAGAGTTGAAA+AGG 0.394668 1.1:-4393492 MS.gene24457:CDS
AACACCGAAGATTCTTAAAC+CGG 0.403134 1.1:-4393219 MS.gene24457:CDS
GGAGTCCAATTGCATTTAGT+TGG 0.404322 1.1:-4392428 MS.gene24457:CDS
TTCGGGAATTGGTGGTGGTT+CGG 0.406373 1.1:-4392700 MS.gene24457:CDS
CCTGTATCTGCCCTTAATCC+TGG 0.408982 1.1:-4392894 MS.gene24457:CDS
ATAGCAGCAGGGCTCCATTC+GGG 0.410860 1.1:+4393032 None:intergenic
GTTGCTTTGGAAACTGCTTC+GGG 0.416721 1.1:-4392717 MS.gene24457:CDS
GCGATGTGTCGAACCAGTTA+AGG 0.422439 1.1:+4394563 None:intergenic
ACTGGTGCGGTTGGTCCAAC+CGG 0.424860 1.1:-4393158 MS.gene24457:CDS
TATAGCAGCAGGGCTCCATT+CGG 0.425762 1.1:+4393031 None:intergenic
ACAATTGTAGATGTTGCAAC+CGG 0.431910 1.1:-4392960 MS.gene24457:CDS
AATGGAGCCCTGCTGCTATA+CGG 0.438332 1.1:-4393028 MS.gene24457:CDS
GTGATGCAAGGAAGAAATAC+AGG 0.441085 1.1:-4392770 MS.gene24457:CDS
AGTAATTGTTGAATACAATA+GGG 0.442339 1.1:-4392670 MS.gene24457:CDS
GGTTATTTGGAATGGAATGA+TGG 0.450530 1.1:-4392465 MS.gene24457:CDS
ATCAACGTCGATGACTATCT+TGG 0.452328 1.1:-4392858 MS.gene24457:CDS
AAATCCGGTTTAAGAATCTT+CGG 0.457772 1.1:+4393215 None:intergenic
AATGTTAGTGATTCCTCAGT+TGG 0.458572 1.1:-4393584 MS.gene24457:CDS
GGTGAAGGTTGTGGTGGAAC+CGG 0.458748 1.1:-4392577 MS.gene24457:CDS
CCAAAATCAAAGGGAGTAGC+TGG 0.462630 1.1:+4392933 None:intergenic
GTGTTCTTGTTGTGTGAAGT+TGG 0.463289 1.1:+4394398 None:intergenic
ACCAACCGCACCAGTCCAAC+CGG 0.463344 1.1:+4393166 None:intergenic
CCGGCTTAGCTCTTGATAAG+AGG 0.466456 1.1:-4393139 MS.gene24457:CDS
TCTAACAAATGTGGGTACTT+CGG 0.467481 1.1:-4392646 MS.gene24457:CDS
ACAAGAACACCACAGTTCCT+TGG 0.468381 1.1:-4394385 MS.gene24457:intron
ATAAACAAGACCAGGATTAA+GGG 0.471249 1.1:+4392884 None:intergenic
TTGGTAAACAATGAAGCATA+TGG 0.474801 1.1:-4393431 MS.gene24457:CDS
GGTGGATTCTTCGTCGGTGA+AGG 0.474913 1.1:-4392592 MS.gene24457:CDS
ACACCGGGAGCTATTAAATC+CGG 0.475696 1.1:+4393200 None:intergenic
TGAAGTTGGTATCTAAGTTC+AGG 0.477951 1.1:+4394412 None:intergenic
GGTATAACATCGAGAATTCC+CGG 0.483240 1.1:+4394433 None:intergenic
TCTTCTACCAGCAGCAGCAT+TGG 0.488105 1.1:-4393384 MS.gene24457:CDS
GCCGGTTGGACTGGTGCGGT+TGG 0.491642 1.1:-4393167 MS.gene24457:CDS
CGAAACACTTTCAAAACAGC+CGG 0.492606 1.1:-4394452 MS.gene24457:CDS
CCTCTTATCAAGAGCTAAGC+CGG 0.497393 1.1:+4393139 None:intergenic
GAAACTGCTTCGGGAATTGG+TGG 0.502307 1.1:-4392708 MS.gene24457:CDS
AAGGAGGTGTATGAGAAGAA+GGG 0.506827 1.1:-4392540 MS.gene24457:CDS
TTCTTCGTCGGTGAAGGTTG+TGG 0.515278 1.1:-4392586 MS.gene24457:CDS
CCAGGATTAAGGGCAGATAC+AGG 0.519987 1.1:+4392894 None:intergenic
AATGATGGGAAGCATAAGGT+TGG 0.520017 1.1:-4392450 MS.gene24457:CDS
ATGATGGGAAGCATAAGGTT+GGG 0.520682 1.1:-4392449 MS.gene24457:CDS
CAATAGGGTTCTAACAAATG+TGG 0.521760 1.1:-4392655 MS.gene24457:CDS
TCCAAAGCAACAGCAAAAGA+AGG 0.523715 1.1:+4392729 None:intergenic
AGTGCTGACCGTATAGCAGC+AGG 0.524204 1.1:+4393020 None:intergenic
TATAAAGTGAGGTTTATTTG+TGG 0.524824 1.1:-4392516 MS.gene24457:CDS
CTTCTACCAGCAGCAGCATT+GGG 0.527599 1.1:-4393383 MS.gene24457:CDS
AGAAGAAGGGTTATAAAGTG+AGG 0.538171 1.1:-4392527 MS.gene24457:CDS
GGAAATTCAAGAGTTGAAAA+GGG 0.538364 1.1:-4393491 MS.gene24457:CDS
TCCTTAAAACTAATAGTCTC+CGG 0.539473 1.1:+4392558 None:intergenic
ACTGCTTCGGGAATTGGTGG+TGG 0.540817 1.1:-4392705 MS.gene24457:CDS
ATGTTAGTGATTCCTCAGTT+GGG 0.541062 1.1:-4393583 MS.gene24457:CDS
AAACCGGATTTAATAGCTCC+CGG 0.547291 1.1:-4393203 MS.gene24457:CDS
GTCGTCGGTGGATTCTTCGT+CGG 0.547772 1.1:-4392598 MS.gene24457:CDS
GAACTGAATGCTGCTACCAC+TGG 0.548090 1.1:+4393260 None:intergenic
TTAAAGGTGCTTACCCCGAA+TGG 0.551612 1.1:-4393046 MS.gene24457:CDS
ACATACAAACACATAGCTCA+TGG 0.551792 1.1:-4394505 MS.gene24457:CDS
ATCAGTGAATGTTTCTGGCA+TGG 0.556012 1.1:+4394588 None:intergenic
GAGAGTTTACTTGTGATGCA+AGG 0.557581 1.1:-4392782 MS.gene24457:CDS
TGACCAGATCCAAAATCAAA+GGG 0.557897 1.1:+4392924 None:intergenic
GTGACCAGATCCAAAATCAA+AGG 0.568440 1.1:+4392923 None:intergenic
GTTATTTGGAATGGAATGAT+GGG 0.571297 1.1:-4392464 MS.gene24457:CDS
TTATCAAGAGCTAAGCCGGT+TGG 0.573292 1.1:+4393143 None:intergenic
ATGGAATGATGGGAAGCATA+AGG 0.577925 1.1:-4392454 MS.gene24457:CDS
TTCTTGGTTAGTTAGTCTTG+TGG 0.579365 1.1:+4394477 None:intergenic
TTCGTCGGTGAAGGTTGTGG+TGG 0.587445 1.1:-4392583 MS.gene24457:CDS
GTAGCAGCATTCAGTTCAAG+AGG 0.593998 1.1:-4393254 MS.gene24457:CDS
CCAAAACTCTTAGTTCCAGA+AGG 0.594321 1.1:+4392486 None:intergenic
TTTAGCCGGTTGGACTGGTG+CGG 0.595588 1.1:-4393171 MS.gene24457:CDS
TGCTACAGTGGTGTTGTCGT+CGG 0.601641 1.1:-4392613 MS.gene24457:CDS
CCGGCTAAAATGTTTACACC+GGG 0.602678 1.1:+4393185 None:intergenic
AATAGGGTTCTAACAAATGT+GGG 0.608022 1.1:-4392654 MS.gene24457:CDS
ACCGGCTAAAATGTTTACAC+CGG 0.608297 1.1:+4393184 None:intergenic
TAGCAGCAGGGCTCCATTCG+GGG 0.609527 1.1:+4393033 None:intergenic
AAAATTGTGATATGTGAAAG+AGG 0.610230 1.1:-4393515 MS.gene24457:CDS
ATGTCATGTCCTCACGCGAG+TGG 0.613061 1.1:-4393083 MS.gene24457:CDS
CAATTGTAGATGTTGCAACC+GGG 0.615237 1.1:-4392959 MS.gene24457:CDS
TACAGTGGTGTTGTCGTCGG+TGG 0.624748 1.1:-4392610 MS.gene24457:CDS
GAAACACTTTCAAAACAGCC+GGG 0.640013 1.1:-4394451 MS.gene24457:CDS
AGTGAATGTTTCTGGCATGG+TGG 0.641351 1.1:+4394591 None:intergenic
TTGATGTCATAAACAAGACC+AGG 0.651872 1.1:+4392876 None:intergenic
GTGCTGACCGTATAGCAGCA+GGG 0.654668 1.1:+4393021 None:intergenic
ACAAGTTCAACCTTCACCAG+TGG 0.655564 1.1:-4393276 MS.gene24457:CDS
ACTCGCGTGAGGACATGACA+TGG 0.656672 1.1:+4393085 None:intergenic
TTTGTACGAGGTGTATGCTG+TGG 0.671813 1.1:+4392992 None:intergenic
TGATGCAAGGAAGAAATACA+GGG 0.674984 1.1:-4392769 MS.gene24457:CDS
GGGAACTTATAATGCTACAG+TGG 0.675174 1.1:-4392625 MS.gene24457:CDS
AATGCTGCTACCACTGGTGA+AGG 0.679217 1.1:+4393266 None:intergenic
GCAGCTAAACCACTCGCGTG+AGG 0.682555 1.1:+4393074 None:intergenic
TTTGGCAAACCAAGGAACTG+TGG 0.689360 1.1:+4394376 None:intergenic
ATCAGATCAAACTTGCTGCG+AGG 0.707097 1.1:-4392806 MS.gene24457:CDS
ATTGTGATATGTGAAAGAGG+TGG 0.737979 1.1:-4393512 MS.gene24457:CDS
TATACAAAGATACCCAACTG+AGG 0.743432 1.1:+4393571 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTGTTGAATACAATA+GGG - chr1.1:4394353-4394372 MS.gene24457:intron 20.0%
!!! TTAACAAGTTCAAAAGTTTT+AGG - chr1.1:4393484-4393503 MS.gene24457:CDS 20.0%
! AAAATTGTGATATGTGAAAG+AGG - chr1.1:4393508-4393527 MS.gene24457:CDS 25.0%
! AGTTATATAACACTTGGAAA+TGG - chr1.1:4393340-4393359 MS.gene24457:CDS 25.0%
! CAACAAAGTCAAGTAATTAT+TGG - chr1.1:4392698-4392717 MS.gene24457:CDS 25.0%
! CAGTAATTGTTGAATACAAT+AGG - chr1.1:4394352-4394371 MS.gene24457:intron 25.0%
! CTATTGTATTCAACAATTAC+TGG + chr1.1:4394354-4394373 None:intergenic 25.0%
! GTGAATTTCAACATTATATC+AGG - chr1.1:4393910-4393929 MS.gene24457:intron 25.0%
! TATAAAGTGAGGTTTATTTG+TGG - chr1.1:4394507-4394526 MS.gene24457:CDS 25.0%
! TTATATAACTAGGAAAATCG+CGG + chr1.1:4393330-4393349 None:intergenic 25.0%
! TTTCCAAGTGTTATATAACT+AGG + chr1.1:4393340-4393359 None:intergenic 25.0%
! TTTCCTAGTTATATAACACT+TGG - chr1.1:4393334-4393353 MS.gene24457:CDS 25.0%
!!! AACTAAGAGTTTTGGTTATT+TGG - chr1.1:4394545-4394564 MS.gene24457:CDS 25.0%
!!! TTTGAACTTGTTAAAGAATC+AGG + chr1.1:4393478-4393497 None:intergenic 25.0%
AAATCCGGTTTAAGAATCTT+CGG + chr1.1:4393811-4393830 None:intergenic 30.0%
ATAAACAAGACCAGGATTAA+GGG + chr1.1:4394142-4394161 None:intergenic 30.0%
ATGGATAAAGCTATAGAAGA+CGG - chr1.1:4393112-4393131 MS.gene24457:CDS 30.0%
ATTATTGGTATTCTTGACAC+TGG - chr1.1:4392713-4392732 MS.gene24457:CDS 30.0%
GGAAATTCAAGAGTTGAAAA+GGG - chr1.1:4393532-4393551 MS.gene24457:CDS 30.0%
TCCTTAAAACTAATAGTCTC+CGG + chr1.1:4394468-4394487 None:intergenic 30.0%
TGATGAATTCATGTTGTTAC+CGG + chr1.1:4392816-4392835 None:intergenic 30.0%
TGGAAATTCAAGAGTTGAAA+AGG - chr1.1:4393531-4393550 MS.gene24457:CDS 30.0%
TTGGTAAACAATGAAGCATA+TGG - chr1.1:4393592-4393611 MS.gene24457:intron 30.0%
! AATAGGGTTCTAACAAATGT+GGG - chr1.1:4394369-4394388 MS.gene24457:intron 30.0%
! GTGCAAGGTTTTTCTTAAAA+GGG - chr1.1:4392858-4392877 MS.gene24457:CDS 30.0%
! GTTATTTGGAATGGAATGAT+GGG - chr1.1:4394559-4394578 MS.gene24457:CDS 30.0%
!! ATCTTCGGTGTTAAACTATT+TGG + chr1.1:4393796-4393815 None:intergenic 30.0%
!! CAAGAGCTAAACTTGTTTTT+GGG - chr1.1:4393713-4393732 MS.gene24457:intron 30.0%
!! GATTCTGTTGTTTCATCTAT+TGG + chr1.1:4392902-4392921 None:intergenic 30.0%
!!! AAGAGCTAAACTTGTTTTTG+GGG - chr1.1:4393714-4393733 MS.gene24457:intron 30.0%
!!! AGAGTTTTGGTTATTTGGAA+TGG - chr1.1:4394550-4394569 MS.gene24457:CDS 30.0%
!!! GGTAAAAGAGTGTTTGTTTT+TGG + chr1.1:4392668-4392687 None:intergenic 30.0%
AACACCGAAGATTCTTAAAC+CGG - chr1.1:4393804-4393823 MS.gene24457:intron 35.0%
AACATCTTATCGATGTCCAT+CGG - chr1.1:4393139-4393158 MS.gene24457:CDS 35.0%
AATGTTAGTGATTCCTCAGT+TGG - chr1.1:4393439-4393458 MS.gene24457:CDS 35.0%
ACAATTGTAGATGTTGCAAC+CGG - chr1.1:4394063-4394082 MS.gene24457:intron 35.0%
ACATACAAACACATAGCTCA+TGG - chr1.1:4392518-4392537 MS.gene24457:CDS 35.0%
ACATTACCTGCATAAACAAG+TGG + chr1.1:4393424-4393443 None:intergenic 35.0%
AGAAGAAGGGTTATAAAGTG+AGG - chr1.1:4394496-4394515 MS.gene24457:CDS 35.0%
ATGTTAGTGATTCCTCAGTT+GGG - chr1.1:4393440-4393459 MS.gene24457:CDS 35.0%
ATTGTGATATGTGAAAGAGG+TGG - chr1.1:4393511-4393530 MS.gene24457:CDS 35.0%
CAAGTCCAACTAAATGCAAT+TGG + chr1.1:4394603-4394622 None:intergenic 35.0%
CATAAACAAGACCAGGATTA+AGG + chr1.1:4394143-4394162 None:intergenic 35.0%
CATACACCTTTCCAATTACT+TGG + chr1.1:4392788-4392807 None:intergenic 35.0%
CCAATACCAAGTAATTGGAA+AGG - chr1.1:4392779-4392798 MS.gene24457:CDS 35.0%
CCTTTCCAATTACTTGGTAT+TGG + chr1.1:4392782-4392801 None:intergenic 35.0%
CTAAAAAGCTTAGATGACAC+AGG - chr1.1:4392749-4392768 MS.gene24457:CDS 35.0%
CTGATACGAAGTGTAGTTTA+AGG + chr1.1:4394202-4394221 None:intergenic 35.0%
GGAAATGGAAAAACTTACAC+TGG - chr1.1:4393355-4393374 MS.gene24457:CDS 35.0%
GGTTTAGCTGCTATAGTTAA+AGG - chr1.1:4393961-4393980 MS.gene24457:intron 35.0%
GTAAAAAAAGCTGGTGGAAT+TGG - chr1.1:4393562-4393581 MS.gene24457:CDS 35.0%
GTATTCTTGACACTGGTATA+TGG - chr1.1:4392720-4392739 MS.gene24457:CDS 35.0%
TACAGAGACATCATTGCAAT+TGG - chr1.1:4393181-4393200 MS.gene24457:CDS 35.0%
TATACAAAGATACCCAACTG+AGG + chr1.1:4393455-4393474 None:intergenic 35.0%
TCTAACAAATGTGGGTACTT+CGG - chr1.1:4394377-4394396 MS.gene24457:intron 35.0%
TGACCAGATCCAAAATCAAA+GGG + chr1.1:4394102-4394121 None:intergenic 35.0%
TGATGCAAGGAAGAAATACA+GGG - chr1.1:4394254-4394273 MS.gene24457:intron 35.0%
TTGATGTCATAAACAAGACC+AGG + chr1.1:4394150-4394169 None:intergenic 35.0%
TTGGTCCAATACCAAGTAAT+TGG - chr1.1:4392774-4392793 MS.gene24457:CDS 35.0%
! AGCTTATTTGGTTTAGCTTC+TGG - chr1.1:4392998-4393017 MS.gene24457:CDS 35.0%
! CAATAGGGTTCTAACAAATG+TGG - chr1.1:4394368-4394387 MS.gene24457:intron 35.0%
! CTTGTTGTAAAAAAAGCTGG+TGG - chr1.1:4393556-4393575 MS.gene24457:CDS 35.0%
! GGTGCAAGGTTTTTCTTAAA+AGG - chr1.1:4392857-4392876 MS.gene24457:CDS 35.0%
! GGTTATTTGGAATGGAATGA+TGG - chr1.1:4394558-4394577 MS.gene24457:CDS 35.0%
! TGGTGGAATTGGAATGATTT+TGG - chr1.1:4393573-4393592 MS.gene24457:CDS 35.0%
!! ATTCTAGTTTCATCTTCAGC+AGG - chr1.1:4393229-4393248 MS.gene24457:CDS 35.0%
!! CCAAAAACAAGTTTAGCTCT+TGG + chr1.1:4393715-4393734 None:intergenic 35.0%
!! CCAAGAGCTAAACTTGTTTT+TGG - chr1.1:4393712-4393731 MS.gene24457:intron 35.0%
!! GGTCTTGTTGTAAAAAAAGC+TGG - chr1.1:4393553-4393572 MS.gene24457:CDS 35.0%
!! TATAGCTTTATCCATTCCAG+CGG + chr1.1:4393107-4393126 None:intergenic 35.0%
!! TGAAGTTGGTATCTAAGTTC+AGG + chr1.1:4392614-4392633 None:intergenic 35.0%
!! TTCTTGGTTAGTTAGTCTTG+TGG + chr1.1:4392549-4392568 None:intergenic 35.0%
!!! ACCGGAGACTATTAGTTTTA+AGG - chr1.1:4394464-4394483 MS.gene24457:CDS 35.0%
!!! AGAGCTAAACTTGTTTTTGG+GGG - chr1.1:4393715-4393734 MS.gene24457:intron 35.0%
!!! GGAGACTATTAGTTTTAAGG+AGG - chr1.1:4394467-4394486 MS.gene24457:CDS 35.0%
!!! TCATCTAAGCTTTTTAGCTC+TGG + chr1.1:4392746-4392765 None:intergenic 35.0%
!!! TGTTTGTTTTTGGCAAACCA+AGG + chr1.1:4392658-4392677 None:intergenic 35.0%
AAAATCGCGGTCAATTGTTC+CGG + chr1.1:4393317-4393336 None:intergenic 40.0%
AAACCGGATTTAATAGCTCC+CGG - chr1.1:4393820-4393839 MS.gene24457:intron 40.0%
ACAGAAAACTCATAGGTGCA+AGG - chr1.1:4392843-4392862 MS.gene24457:CDS 40.0%
ACCGGCTAAAATGTTTACAC+CGG + chr1.1:4393842-4393861 None:intergenic 40.0%
AGATCAGCTAGAGATGATGA+TGG - chr1.1:4392923-4392942 MS.gene24457:CDS 40.0%
AGGTGATCAGTGAATGTTTC+TGG + chr1.1:4392443-4392462 None:intergenic 40.0%
ATCAACGTCGATGACTATCT+TGG - chr1.1:4394165-4394184 MS.gene24457:intron 40.0%
CAATTGTAGATGTTGCAACC+GGG - chr1.1:4394064-4394083 MS.gene24457:intron 40.0%
CACTGCAACAGAAAACTCAT+AGG - chr1.1:4392836-4392855 MS.gene24457:CDS 40.0%
CATTCACTGATCACCTTAAC+TGG - chr1.1:4392447-4392466 MS.gene24457:CDS 40.0%
CCAAAACTCTTAGTTCCAGA+AGG + chr1.1:4394540-4394559 None:intergenic 40.0%
CGAAACACTTTCAAAACAGC+CGG - chr1.1:4392571-4392590 MS.gene24457:CDS 40.0%
CTAACAAATGTGGGTACTTC+GGG - chr1.1:4394378-4394397 MS.gene24457:intron 40.0%
GAAACACTTTCAAAACAGCC+GGG - chr1.1:4392572-4392591 MS.gene24457:CDS 40.0%
GAGAGTTTACTTGTGATGCA+AGG - chr1.1:4394241-4394260 MS.gene24457:intron 40.0%
GCATACACCTCGTACAAAAA+CGG - chr1.1:4394036-4394055 MS.gene24457:intron 40.0%
GGAGTCCAATTGCATTTAGT+TGG - chr1.1:4394595-4394614 MS.gene24457:CDS 40.0%
GGGAACTTATAATGCTACAG+TGG - chr1.1:4394398-4394417 MS.gene24457:CDS 40.0%
GGTATAACATCGAGAATTCC+CGG + chr1.1:4392593-4392612 None:intergenic 40.0%
GTGACCAGATCCAAAATCAA+AGG + chr1.1:4394103-4394122 None:intergenic 40.0%
GTGATGCAAGGAAGAAATAC+AGG - chr1.1:4394253-4394272 MS.gene24457:intron 40.0%
GTTTCATCTTCAGCAGGAAA+TGG - chr1.1:4393235-4393254 MS.gene24457:CDS 40.0%
TCCAAAGCAACAGCAAAAGA+AGG + chr1.1:4394297-4394316 None:intergenic 40.0%
TGCTGAAAGCTTGTCAAATG+TGG - chr1.1:4393267-4393286 MS.gene24457:CDS 40.0%
TTGCTACCACTTGTTTATGC+AGG - chr1.1:4393415-4393434 MS.gene24457:CDS 40.0%
TTTGACAAGCTTTCAGCACT+TGG + chr1.1:4393265-4393284 None:intergenic 40.0%
! AAGGAGGTGTATGAGAAGAA+GGG - chr1.1:4394483-4394502 MS.gene24457:CDS 40.0%
! AATGATGGGAAGCATAAGGT+TGG - chr1.1:4394573-4394592 MS.gene24457:CDS 40.0%
! ATGATGGGAAGCATAAGGTT+GGG - chr1.1:4394574-4394593 MS.gene24457:CDS 40.0%
! ATGGAATGATGGGAAGCATA+AGG - chr1.1:4394569-4394588 MS.gene24457:CDS 40.0%
! GGTAGCAAAGCATCAGTTAA+AGG + chr1.1:4393403-4393422 None:intergenic 40.0%
! GTAGCAGAAGCTAGCTTATT+TGG - chr1.1:4392986-4393005 MS.gene24457:CDS 40.0%
! GTGTTCTTGTTGTGTGAAGT+TGG + chr1.1:4392628-4392647 None:intergenic 40.0%
! TAAGGAGGTGTATGAGAAGA+AGG - chr1.1:4394482-4394501 MS.gene24457:CDS 40.0%
! TGACTTTGTTGTCTAGAGTG+AGG + chr1.1:4392689-4392708 None:intergenic 40.0%
! TGGAAAGGTGTATGTGAAAC+CGG - chr1.1:4392794-4392813 MS.gene24457:CDS 40.0%
!! ACTCCCTTTGATTTTGGATC+TGG - chr1.1:4394096-4394115 MS.gene24457:intron 40.0%
!! ATCAGTGAATGTTTCTGGCA+TGG + chr1.1:4392438-4392457 None:intergenic 40.0%
!! GTGTAAACATTTTAGCCGGT+TGG - chr1.1:4393842-4393861 MS.gene24457:intron 40.0%
!! TGTTGCTTTGGAAACTGCTT+CGG - chr1.1:4394305-4394324 MS.gene24457:intron 40.0%
!! TGTTTGTCCGTTTTTGTACG+AGG + chr1.1:4394046-4394065 None:intergenic 40.0%
!! TTGAAAGTGTTTCGGCTTCT+TGG + chr1.1:4392565-4392584 None:intergenic 40.0%
!!! CCTTCTGGAACTAAGAGTTT+TGG - chr1.1:4394537-4394556 MS.gene24457:CDS 40.0%
!!! CGGCTGTTTTGAAAGTGTTT+CGG + chr1.1:4392573-4392592 None:intergenic 40.0%
!!! TCCTTCTTTTGCTGTTGCTT+TGG - chr1.1:4394293-4394312 MS.gene24457:intron 40.0%
ACAAGAACACCACAGTTCCT+TGG - chr1.1:4392638-4392657 MS.gene24457:CDS 45.0%
ACAAGTTCAACCTTCACCAG+TGG - chr1.1:4393747-4393766 MS.gene24457:intron 45.0%
ACACCGGGAGCTATTAAATC+CGG + chr1.1:4393826-4393845 None:intergenic 45.0%
ACTGGTGCATCACTTTACAG+TGG - chr1.1:4393373-4393392 MS.gene24457:CDS 45.0%
AGCTTAGATGACACAGGACT+TGG - chr1.1:4392755-4392774 MS.gene24457:CDS 45.0%
ATCCATTAAGCTACCACCGA+TGG + chr1.1:4393158-4393177 None:intergenic 45.0%
ATCTTATCGATGTCCATCGG+TGG - chr1.1:4393142-4393161 MS.gene24457:CDS 45.0%
ATTTGTGGCTCAATGCCTTC+TGG - chr1.1:4394522-4394541 MS.gene24457:CDS 45.0%
CACACATTAACAACAGCAGC+AGG - chr1.1:4392956-4392975 MS.gene24457:CDS 45.0%
CCAAAATCAAAGGGAGTAGC+TGG + chr1.1:4394093-4394112 None:intergenic 45.0%
CCGGCTAAAATGTTTACACC+GGG + chr1.1:4393841-4393860 None:intergenic 45.0%
CCTCTTATCAAGAGCTAAGC+CGG + chr1.1:4393887-4393906 None:intergenic 45.0%
GCTTTCACAGCAATGTCTCA+TGG - chr1.1:4393205-4393224 MS.gene24457:CDS 45.0%
GTAGCAGCATTCAGTTCAAG+AGG - chr1.1:4393769-4393788 MS.gene24457:intron 45.0%
TCATCTTCAGCAGGAAATGG+TGG - chr1.1:4393238-4393257 MS.gene24457:CDS 45.0%
TTAGCTTCTGGTACAGCAAG+AGG - chr1.1:4393010-4393029 MS.gene24457:CDS 45.0%
TTATCAAGAGCTAAGCCGGT+TGG + chr1.1:4393883-4393902 None:intergenic 45.0%
TTGGAAACTGCTTCGGGAAT+TGG - chr1.1:4394312-4394331 MS.gene24457:intron 45.0%
TTTGGCAAACCAAGGAACTG+TGG + chr1.1:4392650-4392669 None:intergenic 45.0%
TTTGTACGAGGTGTATGCTG+TGG + chr1.1:4394034-4394053 None:intergenic 45.0%
! AAAGGGTATGAAGCAGCACT+TGG - chr1.1:4392875-4392894 MS.gene24457:CDS 45.0%
! TGATTTTGGATCTGGTCACG+TGG - chr1.1:4394104-4394123 MS.gene24457:intron 45.0%
!! AACATTTTAGCCGGTTGGAC+TGG - chr1.1:4393847-4393866 MS.gene24457:intron 45.0%
!! AGTGAATGTTTCTGGCATGG+TGG + chr1.1:4392435-4392454 None:intergenic 45.0%
!! ATCAGATCAAACTTGCTGCG+AGG - chr1.1:4394217-4394236 MS.gene24457:intron 45.0%
!! CCAGCTACTCCCTTTGATTT+TGG - chr1.1:4394090-4394109 MS.gene24457:intron 45.0%
!! CCCGGTGTAAACATTTTAGC+CGG - chr1.1:4393838-4393857 MS.gene24457:intron 45.0%
!! GCTAGAGATGATGATGGACA+TGG - chr1.1:4392929-4392948 MS.gene24457:CDS 45.0%
!! GTTGCTTTGGAAACTGCTTC+GGG - chr1.1:4394306-4394325 MS.gene24457:intron 45.0%
!! TACAAAGTGTGCTGGCTTAG+CGG - chr1.1:4393061-4393080 MS.gene24457:CDS 45.0%
!! TTAAAGGTGCTTACCCCGAA+TGG - chr1.1:4393977-4393996 MS.gene24457:intron 45.0%
AATGCTGCTACCACTGGTGA+AGG + chr1.1:4393760-4393779 None:intergenic 50.0%
AATGGAGCCCTGCTGCTATA+CGG - chr1.1:4393995-4394014 MS.gene24457:intron 50.0%
CCAGGATTAAGGGCAGATAC+AGG + chr1.1:4394132-4394151 None:intergenic 50.0%
CCTGTATCTGCCCTTAATCC+TGG - chr1.1:4394129-4394148 MS.gene24457:intron 50.0%
CTTCTACCAGCAGCAGCATT+GGG - chr1.1:4393640-4393659 MS.gene24457:intron 50.0%
GAAACTGCTTCGGGAATTGG+TGG - chr1.1:4394315-4394334 MS.gene24457:intron 50.0%
GAACTGAATGCTGCTACCAC+TGG + chr1.1:4393766-4393785 None:intergenic 50.0%
GCACCAACGGTTGTTATCCA+TGG + chr1.1:4393295-4393314 None:intergenic 50.0%
GCACCATGGATAACAACCGT+TGG - chr1.1:4393289-4393308 MS.gene24457:CDS 50.0%
GCGATGTGTCGAACCAGTTA+AGG + chr1.1:4392463-4392482 None:intergenic 50.0%
GCTTGTCAAATGTGGCACCA+TGG - chr1.1:4393275-4393294 MS.gene24457:CDS 50.0%
GTCAATTGTTCCGGCACCAA+CGG + chr1.1:4393308-4393327 None:intergenic 50.0%
GTCCATCGGTGGTAGCTTAA+TGG - chr1.1:4393153-4393172 MS.gene24457:CDS 50.0%
TATAGCAGCAGGGCTCCATT+CGG + chr1.1:4393995-4394014 None:intergenic 50.0%
TCTTCTACCAGCAGCAGCAT+TGG - chr1.1:4393639-4393658 MS.gene24457:intron 50.0%
TGGATAACAACCGTTGGTGC+CGG - chr1.1:4393295-4393314 MS.gene24457:CDS 50.0%
TTCACTTCAGACATAGCCGC+TGG - chr1.1:4393088-4393107 MS.gene24457:CDS 50.0%
TTCAGACATAGCCGCTGGAA+TGG - chr1.1:4393093-4393112 MS.gene24457:CDS 50.0%
TTCTGGTACAGCAAGAGGCA+TGG - chr1.1:4393015-4393034 MS.gene24457:CDS 50.0%
TTCTTCGTCGGTGAAGGTTG+TGG - chr1.1:4394437-4394456 MS.gene24457:CDS 50.0%
! AAAGGGAGTAGCTGGTTTCC+CGG + chr1.1:4394085-4394104 None:intergenic 50.0%
! CCGGCTTAGCTCTTGATAAG+AGG - chr1.1:4393884-4393903 MS.gene24457:intron 50.0%
! TTTTGACCCAATGCTGCTGC+TGG + chr1.1:4393649-4393668 None:intergenic 50.0%
!! TGCTACAGTGGTGTTGTCGT+CGG - chr1.1:4394410-4394429 MS.gene24457:CDS 50.0%
!! TTCGGGAATTGGTGGTGGTT+CGG - chr1.1:4394323-4394342 MS.gene24457:intron 50.0%
ACTCGCGTGAGGACATGACA+TGG + chr1.1:4393941-4393960 None:intergenic 55.0%
ACTGCTTCGGGAATTGGTGG+TGG - chr1.1:4394318-4394337 MS.gene24457:intron 55.0%
ATAGCAGCAGGGCTCCATTC+GGG + chr1.1:4393994-4394013 None:intergenic 55.0%
ATGTCATGTCCTCACGCGAG+TGG - chr1.1:4393940-4393959 MS.gene24457:intron 55.0%
TCGCGGCTTACAAAGTGTGC+TGG - chr1.1:4393053-4393072 MS.gene24457:CDS 55.0%
TTCGTCGGTGAAGGTTGTGG+TGG - chr1.1:4394440-4394459 MS.gene24457:CDS 55.0%
! GGTGAAGGTTGTGGTGGAAC+CGG - chr1.1:4394446-4394465 MS.gene24457:CDS 55.0%
! GGTGGATTCTTCGTCGGTGA+AGG - chr1.1:4394431-4394450 MS.gene24457:CDS 55.0%
! GTCGTCGGTGGATTCTTCGT+CGG - chr1.1:4394425-4394444 MS.gene24457:CDS 55.0%
! GTGCTGACCGTATAGCAGCA+GGG + chr1.1:4394005-4394024 None:intergenic 55.0%
!! AGTGCTGACCGTATAGCAGC+AGG + chr1.1:4394006-4394025 None:intergenic 55.0%
!! TACAGTGGTGTTGTCGTCGG+TGG - chr1.1:4394413-4394432 MS.gene24457:CDS 55.0%
!! TTTAGCCGGTTGGACTGGTG+CGG - chr1.1:4393852-4393871 MS.gene24457:intron 55.0%
ACCAACCGCACCAGTCCAAC+CGG + chr1.1:4393860-4393879 None:intergenic 60.0%
GCAGCTAAACCACTCGCGTG+AGG + chr1.1:4393952-4393971 None:intergenic 60.0%
TAGCAGCAGGGCTCCATTCG+GGG + chr1.1:4393993-4394012 None:intergenic 60.0%
! ACTGGTGCGGTTGGTCCAAC+CGG - chr1.1:4393865-4393884 MS.gene24457:intron 60.0%
! GGCTACAGAAGCGCGTGTCG+CGG - chr1.1:4393036-4393055 MS.gene24457:CDS 65.0%
!! GCCGGTTGGACTGGTGCGGT+TGG - chr1.1:4393856-4393875 MS.gene24457:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 4392422 4394623 4392422 ID=MS.gene24457
chr1.1 mRNA 4392422 4394623 4392422 ID=MS.gene24457.t1;Parent=MS.gene24457
chr1.1 exon 4394386 4394623 4394386 ID=MS.gene24457.t1.exon1;Parent=MS.gene24457.t1
chr1.1 CDS 4394386 4394623 4394386 ID=cds.MS.gene24457.t1;Parent=MS.gene24457.t1
chr1.1 exon 4392422 4393608 4392422 ID=MS.gene24457.t1.exon2;Parent=MS.gene24457.t1
chr1.1 CDS 4392422 4393608 4392422 ID=cds.MS.gene24457.t1;Parent=MS.gene24457.t1
Gene Sequence

>MS.gene24457

ATGGACAAAACCACCATGCCAGAAACATTCACTGATCACCTTAACTGGTTCGACACATCGCTAAAATCAGTATCAGAAACAGCAGAGATTCTATACACATACAAACACATAGCTCATGGATACTCCACAAGACTAACTAACCAAGAAGCCGAAACACTTTCAAAACAGCCGGGAATTCTCGATGTTATACCTGAACTTAGATACCAACTTCACACAACAAGAACACCACAGTTCCTTGGTTTGCCAAAAACAAACACTCTTTTACCTCACTCTAGACAACAAAGTCAAGTAATTATTGGTATTCTTGACACTGGTATATGGCCAGAGCTAAAAAGCTTAGATGACACAGGACTTGGTCCAATACCAAGTAATTGGAAAGGTGTATGTGAAACCGGTAACAACATGAATTCATCACACTGCAACAGAAAACTCATAGGTGCAAGGTTTTTCTTAAAAGGGTATGAAGCAGCACTTGGTCCAATAGATGAAACAACAGAATCAAGATCAGCTAGAGATGATGATGGACATGGAAGTCACACATTAACAACAGCAGCAGGTTCTGTTGTAGCAGAAGCTAGCTTATTTGGTTTAGCTTCTGGTACAGCAAGAGGCATGGCTACAGAAGCGCGTGTCGCGGCTTACAAAGTGTGCTGGCTTAGCGGTTGTTTCACTTCAGACATAGCCGCTGGAATGGATAAAGCTATAGAAGACGGTGTTAACATCTTATCGATGTCCATCGGTGGTAGCTTAATGGATTACTACAGAGACATCATTGCAATTGGTGCTTTCACAGCAATGTCTCATGGAATTCTAGTTTCATCTTCAGCAGGAAATGGTGGACCAAGTGCTGAAAGCTTGTCAAATGTGGCACCATGGATAACAACCGTTGGTGCCGGAACAATTGACCGCGATTTTCCTAGTTATATAACACTTGGAAATGGAAAAACTTACACTGGTGCATCACTTTACAGTGGAAAGCCTTTAACTGATGCTTTGCTACCACTTGTTTATGCAGGTAATGTTAGTGATTCCTCAGTTGGGTATCTTTGTATACCTGATTCTTTAACAAGTTCAAAAGTTTTAGGTAAAATTGTGATATGTGAAAGAGGTGGAAATTCAAGAGTTGAAAAGGGTCTTGTTGTAAAAAAAGCTGGTGGAATTGGAATGATTTTGGTAAACAATGAAGCATATGGTGAAGAGTTAATTGCTGATTCTCATCTTCTACCAGCAGCAGCATTGGGTCAAAAATCAAGCACTGTTTTAAAAGACTACGTTTTTACTACGAAAAATCCAAGAGCTAAACTTGTTTTTGGGGGCACACACTTACAAGTTCAACCTTCACCAGTGGTAGCAGCATTCAGTTCAAGAGGACCAAATAGTTTAACACCGAAGATTCTTAAACCGGATTTAATAGCTCCCGGTGTAAACATTTTAGCCGGTTGGACTGGTGCGGTTGGTCCAACCGGCTTAGCTCTTGATAAGAGGCACGTGAATTTCAACATTATATCAGGAACATCCATGTCATGTCCTCACGCGAGTGGTTTAGCTGCTATAGTTAAAGGTGCTTACCCCGAATGGAGCCCTGCTGCTATACGGTCAGCACTAATGACCACAGCATACACCTCGTACAAAAACGGACAAACAATTGTAGATGTTGCAACCGGGAAACCAGCTACTCCCTTTGATTTTGGATCTGGTCACGTGGATCCTGTATCTGCCCTTAATCCTGGTCTTGTTTATGACATCAACGTCGATGACTATCTTGGATTTTTCTGTGCCTTAAACTACACTTCGTATCAGATCAAACTTGCTGCGAGGAGAGAGTTTACTTGTGATGCAAGGAAGAAATACAGGGTTGAAGATTTTAACTATCCTTCTTTTGCTGTTGCTTTGGAAACTGCTTCGGGAATTGGTGGTGGTTCGGATAAACCAGTAATTGTTGAATACAATAGGGTTCTAACAAATGTGGGTACTTCGGGAACTTATAATGCTACAGTGGTGTTGTCGTCGGTGGATTCTTCGTCGGTGAAGGTTGTGGTGGAACCGGAGACTATTAGTTTTAAGGAGGTGTATGAGAAGAAGGGTTATAAAGTGAGGTTTATTTGTGGCTCAATGCCTTCTGGAACTAAGAGTTTTGGTTATTTGGAATGGAATGATGGGAAGCATAAGGTTGGGAGTCCAATTGCATTTAGTTGGACTTGA
Protein sequence

>MS.gene24457.t1

MDKTTMPETFTDHLNWFDTSLKSVSETAEILYTYKHIAHGYSTRLTNQEAETLSKQPGILDVIPELRYQLHTTRTPQFLGNVSDSSVGYLCIPDSLTSSKVLGKIVICERGGNSRVEKGLVVKKAGGIGMILVNNEAYGEELIADSHLLPAAALGQKSSTVLKDYVFTTKNPRAKLVFGGTHLQVQPSPVVAAFSSRGPNSLTPKILKPDLIAPGVNILAGWTGAVGPTGLALDKRHVNFNIISGTSMSCPHASGLAAIVKGAYPEWSPAAIRSALMTTAYTSYKNGQTIVDVATGKPATPFDFGSGHVDPVSALNPGLVYDINVDDYLGFFCALNYTSYQIKLAARREFTCDARKKYRVEDFNYPSFAVALETASGIGGGSDKPVIVEYNRVLTNVGTSGTYNATVVLSSVDSSSVKVVVEPETISFKEVYEKKGYKVRFICGSMPSGTKSFGYLEWNDGKHKVGSPIAFSWT