AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053318


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053318.t1 MTR_1g041275 97.656 512 12 0 1 512 49 560 0.0 1031
MS.gene053318.t1 MTR_3g115210 39.244 344 177 9 167 504 88 405 2.42e-60 205
MS.gene053318.t1 MTR_3g115210 41.083 314 153 9 176 483 97 384 6.17e-56 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053318.t1 AT3G55760 61.122 517 184 6 1 508 68 576 0.0 615
MS.gene053318.t1 AT3G55760 61.122 517 184 6 1 508 68 576 0.0 615
MS.gene053318.t1 AT3G55760 61.122 517 184 6 1 508 68 576 0.0 615
MS.gene053318.t1 AT1G42430 37.950 361 203 9 156 509 54 400 1.73e-59 202
MS.gene053318.t1 AT1G42430 45.185 270 131 7 243 509 128 383 7.02e-59 200

Find 136 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTGTGTTCCTGATTT+TGG 0.108621 1.2:-25453788 None:intergenic
TATGAAAGATTTCCTCATTT+TGG 0.159505 1.2:+25455844 MS.gene053318:CDS
GAAATGTTTGGCGTGAATTT+TGG 0.187840 1.2:+25454371 MS.gene053318:CDS
CAAGAGTCCGGAACACAAAA+TGG 0.241861 1.2:+25453752 MS.gene053318:CDS
TTCTGATGAGTTTGGCTATA+AGG 0.253590 1.2:+25454312 MS.gene053318:CDS
TAGAGTGGCAAGAAAAGTTT+TGG 0.265679 1.2:+25454284 MS.gene053318:CDS
GACCTTTCCTTCTCGATAAC+AGG 0.278049 1.2:-25453932 None:intergenic
CCAGCATCGAGGGGTGTGTT+TGG 0.290855 1.2:-25454982 None:intergenic
TGTGTTTCTTTCTCGTTCTA+TGG 0.293500 1.2:-25452324 None:intergenic
CAGACGGCGGATGGGAGAAA+TGG 0.310576 1.2:+25455626 MS.gene053318:CDS
ACCACTCCAGTCATCGTTAG+AGG 0.318460 1.2:+25454021 MS.gene053318:CDS
TTCAACCCATTAGCATCATT+TGG 0.328459 1.2:-25453869 None:intergenic
AGACGGCGGATGGGAGAAAT+GGG 0.342328 1.2:+25455627 MS.gene053318:CDS
TGGGAGGCTTCTGATGAGTT+TGG 0.351158 1.2:+25454304 MS.gene053318:CDS
ATGCTGGGCACGCTCATGTC+TGG 0.361471 1.2:+25454998 MS.gene053318:CDS
GATCTGACAGAATCAGATTC+AGG 0.377933 1.2:+25453704 MS.gene053318:intron
CATCTGGTCAAGCTGAGAAA+TGG 0.383913 1.2:+25454935 MS.gene053318:CDS
CTCCACCATCTTGTTCCATC+AGG 0.387383 1.2:-25454181 None:intergenic
GGGAGAAATGGGGCGACAAA+TGG 0.387783 1.2:+25455638 MS.gene053318:CDS
CCAAACACACCCCTCGATGC+TGG 0.389295 1.2:+25454982 MS.gene053318:CDS
CAGCATCGAGGGGTGTGTTT+GGG 0.394807 1.2:-25454981 None:intergenic
ATGATTTACTGTCCATTTCA+AGG 0.399040 1.2:-25454141 None:intergenic
GCATAAAATACACTGACAAA+TGG 0.414004 1.2:+25455590 MS.gene053318:CDS
TGGAGAAAACTGCAGACAAA+TGG 0.423581 1.2:+25454857 MS.gene053318:CDS
GGTGAGCAACACAATGGTTC+TGG 0.424760 1.2:+25455751 MS.gene053318:CDS
GTTCCTCCAAATGATGCTAA+TGG 0.427103 1.2:+25453863 MS.gene053318:CDS
GGAGAAAACTGCAGACAAAT+GGG 0.427855 1.2:+25454858 MS.gene053318:CDS
TTGAAAACTCAGTTCAGCTC+AGG 0.428748 1.2:+25455881 MS.gene053318:CDS
GACAGTAAATCATCACCTAT+TGG 0.431570 1.2:+25454151 MS.gene053318:CDS
TTCCTTCTCGATAACAGGAT+TGG 0.433266 1.2:-25453927 None:intergenic
ATCTGGTCAAGCTGAGAAAT+GGG 0.440062 1.2:+25454936 MS.gene053318:CDS
TTTCAAGTGAGGAACGTGAT+AGG 0.442901 1.2:+25452438 MS.gene053318:CDS
GCAGACAAATGGGGAAGAAA+TGG 0.443554 1.2:+25454868 MS.gene053318:CDS
GAACTTGGTTCTGAGAAATC+TGG 0.444964 1.2:+25454334 MS.gene053318:CDS
TTGGAGAGAATCCATGCGTC+AGG 0.446144 1.2:+25454390 MS.gene053318:CDS
GAGCAGTAGTGGTGAACATT+GGG 0.446442 1.2:+25455795 MS.gene053318:CDS
GGAGAAATGGGGCGACAAAT+GGG 0.449865 1.2:+25455639 MS.gene053318:CDS
TGCTGCTAGAGCGCTTCTTA+AGG 0.450496 1.2:+25452505 MS.gene053318:CDS
CTCTTCCACGCCGTCGTCGT+TGG 0.451185 1.2:-25452372 None:intergenic
GGAAAACGGGCTAATGCATA+TGG 0.457407 1.2:+25454837 MS.gene053318:intron
AGCAATAGTGTTCGTTCTGA+TGG 0.458239 1.2:+25452536 MS.gene053318:CDS
CACACGAAATGCAAGATACT+TGG 0.460475 1.2:+25455821 MS.gene053318:CDS
CATAAAATACACTGACAAAT+GGG 0.461214 1.2:+25455591 MS.gene053318:CDS
TCCGCCGTCTGTTGAACGCT+CGG 0.461325 1.2:-25455614 None:intergenic
ATAACAGGATTGGATAATGT+TGG 0.462117 1.2:-25453917 None:intergenic
CTGAGAAATGGGCACACAAA+TGG 0.464068 1.2:+25454947 MS.gene053318:CDS
AGCGGTGAGTTTGTTGAAGT+GGG 0.464408 1.2:-25452348 None:intergenic
CACGCCGTCGTCGTTGGAAG+CGG 0.464942 1.2:-25452366 None:intergenic
GAGAGCGCTGGAACCGGACT+TGG 0.466122 1.2:+25455728 MS.gene053318:CDS
CCATCAGGATTCACACCAAT+AGG 0.468455 1.2:-25454166 None:intergenic
AGCACGGAGAGCGCTGGAAC+CGG 0.469923 1.2:+25455722 MS.gene053318:CDS
TGAGTAAGTAAACTCTCAAA+TGG 0.477010 1.2:-25453974 None:intergenic
TGTGTTGCTCACCCCAAGTC+CGG 0.478776 1.2:-25455741 None:intergenic
TGGTAAAGGTGATGAGTGGC+AGG 0.479211 1.2:+25454888 MS.gene053318:CDS
CAAACACACCCCTCGATGCT+GGG 0.481029 1.2:+25454983 MS.gene053318:CDS
CACCTACAAATGACACCATC+AGG 0.483819 1.2:-25454226 None:intergenic
AGTAGTTCGAGCCCTTGAAA+TGG 0.492366 1.2:+25454129 MS.gene053318:CDS
ATGAGCGTGCCCAGCATCGA+GGG 0.492801 1.2:-25454992 None:intergenic
TTCCTCCAAATGATGCTAAT+GGG 0.498741 1.2:+25453864 MS.gene053318:CDS
TGATAGGATTCAGAGATTGC+AGG 0.499013 1.2:+25452454 MS.gene053318:CDS
AATTTCGATCTTAATGCTCA+TGG 0.500272 1.2:+25455667 MS.gene053318:CDS
ACAAGATGGTGGAGAGAGAC+GGG 0.501456 1.2:+25454190 MS.gene053318:CDS
AGCGTTCAACAGACGGCGGA+TGG 0.504130 1.2:+25455617 MS.gene053318:CDS
TAATGCTCATGGCATCAAGC+AGG 0.505562 1.2:+25455678 MS.gene053318:CDS
AAATCTGGACGTGATGCAAA+TGG 0.507451 1.2:+25454349 MS.gene053318:CDS
AGAGCGCTGGAACCGGACTT+GGG 0.507830 1.2:+25455729 MS.gene053318:CDS
AACTACTTCTGCTGCATGGT+CGG 0.510338 1.2:-25454113 None:intergenic
AAGCGGTGAGTTTGTTGAAG+TGG 0.514928 1.2:-25452349 None:intergenic
TTTGAACACTACAATGCATC+TGG 0.515541 1.2:+25454919 MS.gene053318:CDS
GAGTTTGGCTATAAGGAACT+TGG 0.516769 1.2:+25454319 MS.gene053318:CDS
TTTGAACCTCTAACGATGAC+TGG 0.524222 1.2:-25454027 None:intergenic
ACACAGAAAGATGGTATCCC+AGG 0.524867 1.2:+25453800 MS.gene053318:CDS
AAGGTAAGCACGGAGAGCGC+TGG 0.526501 1.2:+25455716 MS.gene053318:CDS
AAGAGTCCGGAACACAAAAT+GGG 0.528614 1.2:+25453753 MS.gene053318:CDS
TGTTGGATTAACTGAAGACT+TGG 0.531834 1.2:-25453900 None:intergenic
AGAGTCTCCTTCTGTGGAAG+AGG 0.534266 1.2:+25454066 MS.gene053318:CDS
TGATTTACTGTCCATTTCAA+GGG 0.535145 1.2:-25454140 None:intergenic
TCTGGATGGGTTCACAAGTA+CGG 0.540590 1.2:+25455769 MS.gene053318:CDS
AACCCATTAGCATCATTTGG+AGG 0.542056 1.2:-25453866 None:intergenic
AGAGCAGTAGTGGTGAACAT+TGG 0.544824 1.2:+25455794 MS.gene053318:CDS
GACCTGATGGTGTCATTTGT+AGG 0.552905 1.2:+25454224 MS.gene053318:CDS
AGCAACACAATGGTTCTGGA+TGG 0.562143 1.2:+25455755 MS.gene053318:CDS
AAATCAGGAACACAGAAAGA+TGG 0.562399 1.2:+25453791 MS.gene053318:CDS
CTCGAACTACTTCTGCTGCA+TGG 0.563479 1.2:-25454117 None:intergenic
AGACTCTACATTTGAAGAAG+CGG 0.565948 1.2:-25454050 None:intergenic
GTGATGCAAATGGAAATGTT+TGG 0.566936 1.2:+25454359 MS.gene053318:CDS
AACAAGATGGTGGAGAGAGA+CGG 0.567285 1.2:+25454189 MS.gene053318:CDS
TAGGGTTCTTGCCTTTCCGA+AGG 0.573308 1.2:-25455916 None:intergenic
ATCCAATCCTGTTATCGAGA+AGG 0.574315 1.2:+25453925 MS.gene053318:CDS
CAGGGAGAGACGTGGTGGGA+AGG 0.575406 1.2:+25455697 MS.gene053318:CDS
ACGCTCATGTCTGGCACGAA+AGG 0.579391 1.2:+25455007 MS.gene053318:CDS
TGAAAACTCAGTTCAGCTCA+GGG 0.581943 1.2:+25455882 MS.gene053318:CDS
TGGGCCGAGCGTTCAACAGA+CGG 0.583995 1.2:+25455610 MS.gene053318:CDS
AAATGGGGAAGAAATGGTAA+AGG 0.588296 1.2:+25454874 MS.gene053318:CDS
CGCTTCCAACGACGACGGCG+TGG 0.589185 1.2:+25452367 MS.gene053318:CDS
AGAGTTTCAGAAGATTCTAG+AGG 0.589382 1.2:+25452415 MS.gene053318:CDS
AAGTACGGAAAGAGCAGTAG+TGG 0.590362 1.2:+25455784 MS.gene053318:CDS
GATTCTAGAGGTTTCAAGTG+AGG 0.591311 1.2:+25452427 MS.gene053318:CDS
CCTATTGGTGTGAATCCTGA+TGG 0.594533 1.2:+25454166 MS.gene053318:CDS
GCGTTCAACAGACGGCGGAT+GGG 0.595747 1.2:+25455618 MS.gene053318:CDS
AAATGTAGAGTCTCCTTCTG+TGG 0.598333 1.2:+25454060 MS.gene053318:CDS
AATAACGCTAACCTGACGCA+TGG 0.605694 1.2:-25454401 None:intergenic
GGAATTGAGCAAAGACCTGA+TGG 0.605980 1.2:+25454211 MS.gene053318:CDS
CAGTGATAGAAACCAAAATG+AGG 0.608424 1.2:-25455856 None:intergenic
AATGCTCATGGCATCAAGCA+GGG 0.610191 1.2:+25455679 MS.gene053318:CDS
CATGAGCGTGCCCAGCATCG+AGG 0.610977 1.2:-25454993 None:intergenic
GAGCGCTGGAACCGGACTTG+GGG 0.611983 1.2:+25455730 MS.gene053318:CDS
GCAACACAATGGTTCTGGAT+GGG 0.612606 1.2:+25455756 MS.gene053318:CDS
TCAAGCAGGGAGAGACGTGG+TGG 0.614018 1.2:+25455692 MS.gene053318:CDS
GAAACATATGACGGGTATGG+TGG 0.617066 1.2:+25455565 MS.gene053318:CDS
GACTGGAGTGGTGGAAGTGT+AGG 0.618503 1.2:-25454010 None:intergenic
GTGCTGACAAAGCTTTAGAG+TGG 0.618802 1.2:+25454269 MS.gene053318:CDS
GGTGGGGTGAAACATATGAC+GGG 0.620853 1.2:+25455557 MS.gene053318:intron
ATCCTGTTATCGAGAAGGAA+AGG 0.623492 1.2:+25453930 MS.gene053318:CDS
AGGTGGGGTGAAACATATGA+CGG 0.630842 1.2:+25455556 MS.gene053318:intron
TCTAACGATGACTGGAGTGG+TGG 0.633376 1.2:-25454019 None:intergenic
ACGTGGTGGGAAGGTAAGCA+CGG 0.635347 1.2:+25455706 MS.gene053318:CDS
GGTGAAACATATGACGGGTA+TGG 0.637599 1.2:+25455562 MS.gene053318:CDS
TGAGCGTGCCCAGCATCGAG+GGG 0.644819 1.2:-25454991 None:intergenic
TTGGTCATGGACACCTCCGG+TGG 0.645266 1.2:+25453832 MS.gene053318:CDS
GGAGGAACATCACTATCCAC+CGG 0.646860 1.2:-25453848 None:intergenic
TGGAATCAAGAGAGATTGCG+AGG 0.648243 1.2:-25453954 None:intergenic
GACGGCGGATGGGAGAAATG+GGG 0.665274 1.2:+25455628 MS.gene053318:CDS
TGTAGGTGGACAGTGATCAG+AGG 0.666697 1.2:+25454241 MS.gene053318:CDS
GAGAAAACTGCAGACAAATG+GGG 0.668805 1.2:+25454859 MS.gene053318:CDS
GAAATGGTAAAGGTGATGAG+TGG 0.671438 1.2:+25454884 MS.gene053318:CDS
CAAGCAGGGAGAGACGTGGT+GGG 0.673085 1.2:+25455693 MS.gene053318:CDS
ATCCTGATGGAACAAGATGG+TGG 0.685087 1.2:+25454179 MS.gene053318:CDS
TGAATCCTGATGGAACAAGA+TGG 0.685480 1.2:+25454176 MS.gene053318:CDS
ACTTGGGGTGAGCAACACAA+TGG 0.688078 1.2:+25455745 MS.gene053318:CDS
CTCACCGCTTCCAACGACGA+CGG 0.689866 1.2:+25452362 MS.gene053318:CDS
GCATCAAGCAGGGAGAGACG+TGG 0.692419 1.2:+25455689 MS.gene053318:CDS
CTGATGGTGTCATTTGTAGG+TGG 0.699847 1.2:+25454227 MS.gene053318:CDS
ACCTCTAACGATGACTGGAG+TGG 0.704009 1.2:-25454022 None:intergenic
GGAACATCACTATCCACCGG+AGG 0.717633 1.2:-25453845 None:intergenic
GCCGAGCGTTCAACAGACGG+CGG 0.734636 1.2:+25455613 MS.gene053318:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTGATTTTTTTTAG+GGG + chr1.2:25453390-25453409 MS.gene053318:intron 10.0%
!!! CAAAATATTGATTTTTTTTA+GGG + chr1.2:25453389-25453408 MS.gene053318:intron 10.0%
!!! TTCAGATAATTATAAATTTT+TGG - chr1.2:25454629-25454648 None:intergenic 10.0%
!! AGAATAAGTTAGATTAAAAA+GGG - chr1.2:25455370-25455389 None:intergenic 15.0%
!! ATAATGAAAATACTACATAA+TGG - chr1.2:25453474-25453493 None:intergenic 15.0%
!! TAGAATAAGTTAGATTAAAA+AGG - chr1.2:25455371-25455390 None:intergenic 15.0%
!!! AAATATTGATTTTTTTTAGG+GGG + chr1.2:25453391-25453410 MS.gene053318:intron 15.0%
!!! ATTAAACTCTAATGAAATTT+TGG - chr1.2:25452943-25452962 None:intergenic 15.0%
!!! GCAAAATATTGATTTTTTTT+AGG + chr1.2:25453388-25453407 MS.gene053318:intron 15.0%
!!! TTTTAATCTAACTTATTCTA+AGG + chr1.2:25455371-25455390 MS.gene053318:intron 15.0%
!!! TTTTTTTTCTTAAACTAACA+AGG + chr1.2:25453592-25453611 MS.gene053318:intron 15.0%
!! AATTTCATTAGAGTTTAATC+TGG + chr1.2:25452944-25452963 MS.gene053318:intron 20.0%
!! GCAATATTTATCAAAACATT+GGG - chr1.2:25455423-25455442 None:intergenic 20.0%
!! TAATTCCATATAAAATCAAC+TGG + chr1.2:25452747-25452766 MS.gene053318:intron 20.0%
!! TATGATTATACCGAATTATT+TGG + chr1.2:25453069-25453088 MS.gene053318:intron 20.0%
!! TGCAATATTTATCAAAACAT+TGG - chr1.2:25455424-25455443 None:intergenic 20.0%
!! TTGGTTAATTGAATAATGTA+GGG + chr1.2:25452665-25452684 MS.gene053318:intron 20.0%
!! TTTGAGAAAACCAAATAATT+CGG - chr1.2:25453082-25453101 None:intergenic 20.0%
!! TTTGGTTAATTGAATAATGT+AGG + chr1.2:25452664-25452683 MS.gene053318:intron 20.0%
!!! AATATTGATTTTTTTTAGGG+GGG + chr1.2:25453392-25453411 MS.gene053318:intron 20.0%
!!! ATAATCCAGTTGATTTTATA+TGG - chr1.2:25452755-25452774 None:intergenic 20.0%
!!! CAACTGGATTATTTTATTTT+TGG + chr1.2:25452763-25452782 MS.gene053318:intron 20.0%
!!! GGAAAAAATTTAAAACAAAC+AGG + chr1.2:25455195-25455214 MS.gene053318:intron 20.0%
!!! TGAATTTTTGTTCTGATTTT+TGG + chr1.2:25452622-25452641 MS.gene053318:intron 20.0%
! AAAGATCACTAAACCTTTAA+GGG - chr1.2:25455093-25455112 None:intergenic 25.0%
! AGATGAAAAAAAATGTGGTT+GGG + chr1.2:25453293-25453312 MS.gene053318:intron 25.0%
! ATATTCTGTGTAGTAAAAAG+TGG + chr1.2:25453539-25453558 MS.gene053318:intron 25.0%
! ATCTTGTATCTTAAGCAATA+AGG + chr1.2:25455486-25455505 MS.gene053318:intron 25.0%
! ATTTATCAAAACATTGGGTA+AGG - chr1.2:25455418-25455437 None:intergenic 25.0%
! CATAAAATACACTGACAAAT+GGG + chr1.2:25455591-25455610 MS.gene053318:CDS 25.0%
! CTTGTAGATGAAAAAAAATG+TGG + chr1.2:25453288-25453307 MS.gene053318:intron 25.0%
! TAGATGAAAAAAAATGTGGT+TGG + chr1.2:25453292-25453311 MS.gene053318:intron 25.0%
!! TATGAAAGATTTCCTCATTT+TGG + chr1.2:25455844-25455863 MS.gene053318:CDS 25.0%
!!! AATTCCTTTTTTGCAAACAA+AGG - chr1.2:25455140-25455159 None:intergenic 25.0%
!!! ATTTTTGGTTTTTAGGGTTT+TGG + chr1.2:25452637-25452656 MS.gene053318:intron 25.0%
!!! CACATTTTTTTTCATCTACA+AGG - chr1.2:25453290-25453309 None:intergenic 25.0%
!!! GTTCTGATTTTTGGTTTTTA+GGG + chr1.2:25452631-25452650 MS.gene053318:intron 25.0%
!!! TAGAAGTGCTTAAAAAACAT+TGG - chr1.2:25454673-25454692 None:intergenic 25.0%
!!! TGTTCTGATTTTTGGTTTTT+AGG + chr1.2:25452630-25452649 MS.gene053318:intron 25.0%
!!! TTTTAGGGTTTTGGATTTTT+TGG + chr1.2:25452646-25452665 MS.gene053318:intron 25.0%
AAAAAAAATGTGGTTGGGAT+GGG + chr1.2:25453298-25453317 MS.gene053318:intron 30.0%
AAACCTATGATGCAAAGATA+CGG - chr1.2:25453159-25453178 None:intergenic 30.0%
AAATATTGCAAATAGCTTCC+TGG + chr1.2:25455434-25455453 MS.gene053318:intron 30.0%
AACTTCCCTCATAAATTAGT+CGG + chr1.2:25454704-25454723 MS.gene053318:intron 30.0%
AATTTCGATCTTAATGCTCA+TGG + chr1.2:25455667-25455686 MS.gene053318:CDS 30.0%
ACATAATGGCATGAGAAAAA+GGG - chr1.2:25453460-25453479 None:intergenic 30.0%
ACATGATTGAAGTCAAGAAA+AGG + chr1.2:25453516-25453535 MS.gene053318:intron 30.0%
AGGATTAGAGATAGATTCTA+TGG + chr1.2:25452706-25452725 MS.gene053318:intron 30.0%
ATAACAGGATTGGATAATGT+TGG - chr1.2:25453920-25453939 None:intergenic 30.0%
ATGATTTACTGTCCATTTCA+AGG - chr1.2:25454144-25454163 None:intergenic 30.0%
GAAAGATCACTAAACCTTTA+AGG - chr1.2:25455094-25455113 None:intergenic 30.0%
GCATAAAATACACTGACAAA+TGG + chr1.2:25455590-25455609 MS.gene053318:CDS 30.0%
GGAGATACGTTACAAAAATA+TGG + chr1.2:25452557-25452576 MS.gene053318:CDS 30.0%
TACATAATGGCATGAGAAAA+AGG - chr1.2:25453461-25453480 None:intergenic 30.0%
TCATAGTATTTAGCCCTTAA+AGG + chr1.2:25455077-25455096 MS.gene053318:intron 30.0%
TGAGTAAGTAAACTCTCAAA+TGG - chr1.2:25453977-25453996 None:intergenic 30.0%
TGATTTACTGTCCATTTCAA+GGG - chr1.2:25454143-25454162 None:intergenic 30.0%
TTAAGTATCCAATACTCTGT+AGG - chr1.2:25454784-25454803 None:intergenic 30.0%
TTCGGTATAATCATATGTGT+TGG - chr1.2:25453064-25453083 None:intergenic 30.0%
! ACATACCGACTAATTTATGA+GGG - chr1.2:25454712-25454731 None:intergenic 30.0%
! ATACTGAGCATGATTTTCAA+TGG + chr1.2:25454812-25454831 MS.gene053318:intron 30.0%
! GATTCCTTTGTTTGCAAAAA+AGG + chr1.2:25455133-25455152 MS.gene053318:intron 30.0%
! TACATACCGACTAATTTATG+AGG - chr1.2:25454713-25454732 None:intergenic 30.0%
! TGGTTTTCTCAAATTAGTAG+CGG + chr1.2:25453089-25453108 MS.gene053318:intron 30.0%
AAACCAGAGACCTTAGTTAA+GGG - chr1.2:25453264-25453283 None:intergenic 35.0%
AAATCAGGAACACAGAAAGA+TGG + chr1.2:25453791-25453810 MS.gene053318:CDS 35.0%
AAATGGGGAAGAAATGGTAA+AGG + chr1.2:25454874-25454893 MS.gene053318:CDS 35.0%
AAGTACAAAAACCTTCGGAA+AGG + chr1.2:25455905-25455924 MS.gene053318:CDS 35.0%
AGACCTTAGTTAAGGGATTT+GGG - chr1.2:25453257-25453276 None:intergenic 35.0%
AGACTCTACATTTGAAGAAG+CGG - chr1.2:25454053-25454072 None:intergenic 35.0%
AGAGTTTCAGAAGATTCTAG+AGG + chr1.2:25452415-25452434 MS.gene053318:CDS 35.0%
ATGTAATGCTCATGCTTATG+TGG - chr1.2:25453215-25453234 None:intergenic 35.0%
ATTGAATAATGTAGGGACTG+TGG + chr1.2:25452672-25452691 MS.gene053318:intron 35.0%
CAGTGATAGAAACCAAAATG+AGG - chr1.2:25455859-25455878 None:intergenic 35.0%
CATAAGCATGAGCATTACAT+TGG + chr1.2:25453215-25453234 MS.gene053318:intron 35.0%
CTTATGAACCTACAGAGTAT+TGG + chr1.2:25454773-25454792 MS.gene053318:intron 35.0%
GAAAAAAAATGTGGTTGGGA+TGG + chr1.2:25453297-25453316 MS.gene053318:intron 35.0%
GACAGTAAATCATCACCTAT+TGG + chr1.2:25454151-25454170 MS.gene053318:CDS 35.0%
GGGCTAAATACTATGAAAAG+AGG - chr1.2:25455073-25455092 None:intergenic 35.0%
GTGATGCAAATGGAAATGTT+TGG + chr1.2:25454359-25454378 MS.gene053318:CDS 35.0%
TACTTAAGGTCGAATCAATC+AGG + chr1.2:25454516-25454535 MS.gene053318:intron 35.0%
TATGAAGCATGTGAACTTCT+CGG + chr1.2:25452996-25453015 MS.gene053318:intron 35.0%
TCTGTGTAGTAAAAAGTGGA+AGG + chr1.2:25453543-25453562 MS.gene053318:intron 35.0%
TGTGTTTCTTTCTCGTTCTA+TGG - chr1.2:25452327-25452346 None:intergenic 35.0%
TGTTGGATTAACTGAAGACT+TGG - chr1.2:25453903-25453922 None:intergenic 35.0%
TTCAACCCATTAGCATCATT+TGG - chr1.2:25453872-25453891 None:intergenic 35.0%
TTCCTCCAAATGATGCTAAT+GGG + chr1.2:25453864-25453883 MS.gene053318:CDS 35.0%
TTCTGATGAGTTTGGCTATA+AGG + chr1.2:25454312-25454331 MS.gene053318:CDS 35.0%
TTGTACACGAAAGATGTTAG+TGG + chr1.2:25453650-25453669 MS.gene053318:intron 35.0%
TTTCATCCAGGGAACAAATT+CGG - chr1.2:25454546-25454565 None:intergenic 35.0%
TTTGAACACTACAATGCATC+TGG + chr1.2:25454919-25454938 MS.gene053318:CDS 35.0%
! ACTCTTTTTGTGCCAAAATC+AGG + chr1.2:25453776-25453795 MS.gene053318:CDS 35.0%
! AGAGTGGCAAGAAAAGTTTT+GGG + chr1.2:25454285-25454304 MS.gene053318:CDS 35.0%
! ATTTTCAATGGCAGGAAAAC+GGG + chr1.2:25454824-25454843 MS.gene053318:intron 35.0%
! CAAAACATTGGGTAAGGTTT+TGG - chr1.2:25455412-25455431 None:intergenic 35.0%
! GAAATGTTTGGCGTGAATTT+TGG + chr1.2:25454371-25454390 MS.gene053318:CDS 35.0%
! GATTTTCAATGGCAGGAAAA+CGG + chr1.2:25454823-25454842 MS.gene053318:intron 35.0%
! TAGAGTGGCAAGAAAAGTTT+TGG + chr1.2:25454284-25454303 MS.gene053318:CDS 35.0%
! TCTTTCTGTGTTCCTGATTT+TGG - chr1.2:25453791-25453810 None:intergenic 35.0%
!! AGTATTTTTGTGCAAGAGTC+CGG + chr1.2:25453740-25453759 MS.gene053318:CDS 35.0%
!! TGGTCAATGGACTATACTTA+AGG + chr1.2:25454502-25454521 MS.gene053318:intron 35.0%
AAATCTGGACGTGATGCAAA+TGG + chr1.2:25454349-25454368 MS.gene053318:CDS 40.0%
AAATGTAGAGTCTCCTTCTG+TGG + chr1.2:25454060-25454079 MS.gene053318:CDS 40.0%
AACCCATTAGCATCATTTGG+AGG - chr1.2:25453869-25453888 None:intergenic 40.0%
AAGAGTCCGGAACACAAAAT+GGG + chr1.2:25453753-25453772 MS.gene053318:CDS 40.0%
AAGATTCATGAACGCACCAA+GGG - chr1.2:25454756-25454775 None:intergenic 40.0%
AATCCCTTAACTAAGGTCTC+TGG + chr1.2:25453258-25453277 MS.gene053318:intron 40.0%
AGCAATAGTGTTCGTTCTGA+TGG + chr1.2:25452536-25452555 MS.gene053318:CDS 40.0%
AGCCAAAGATTGTTTCATCC+AGG - chr1.2:25454558-25454577 None:intergenic 40.0%
ATAATGTAGGGACTGTGGTT+TGG + chr1.2:25452677-25452696 MS.gene053318:intron 40.0%
ATCCAATCCTGTTATCGAGA+AGG + chr1.2:25453925-25453944 MS.gene053318:CDS 40.0%
ATCCTGTTATCGAGAAGGAA+AGG + chr1.2:25453930-25453949 MS.gene053318:CDS 40.0%
ATCTGGTCAAGCTGAGAAAT+GGG + chr1.2:25454936-25454955 MS.gene053318:CDS 40.0%
ATGACCAAAAATCAGGACCT+GGG - chr1.2:25453820-25453839 None:intergenic 40.0%
CAAACCAGAGACCTTAGTTA+AGG - chr1.2:25453265-25453284 None:intergenic 40.0%
CACACGAAATGCAAGATACT+TGG + chr1.2:25455821-25455840 MS.gene053318:CDS 40.0%
CAGGATATAAGCATGTCTCA+TGG + chr1.2:25455214-25455233 MS.gene053318:intron 40.0%
CATGCTTATGTGGCAATGTA+TGG - chr1.2:25453205-25453224 None:intergenic 40.0%
GAAATGGTAAAGGTGATGAG+TGG + chr1.2:25454884-25454903 MS.gene053318:CDS 40.0%
GACGTTAGTAGTTTACAGCT+GGG + chr1.2:25453429-25453448 MS.gene053318:intron 40.0%
GAGAAAACTGCAGACAAATG+GGG + chr1.2:25454859-25454878 MS.gene053318:CDS 40.0%
GAGACCTTAGTTAAGGGATT+TGG - chr1.2:25453258-25453277 None:intergenic 40.0%
GAGTTTGGCTATAAGGAACT+TGG + chr1.2:25454319-25454338 MS.gene053318:CDS 40.0%
GATCTGACAGAATCAGATTC+AGG + chr1.2:25453704-25453723 MS.gene053318:intron 40.0%
GATTAAAAAGGGAAGCAACG+TGG - chr1.2:25455359-25455378 None:intergenic 40.0%
GCCAAAGATTGTTTCATCCA+GGG - chr1.2:25454557-25454576 None:intergenic 40.0%
GGAGAAAACTGCAGACAAAT+GGG + chr1.2:25454858-25454877 MS.gene053318:CDS 40.0%
GTTCCTCCAAATGATGCTAA+TGG + chr1.2:25453863-25453882 MS.gene053318:CDS 40.0%
TAAGATTCATGAACGCACCA+AGG - chr1.2:25454757-25454776 None:intergenic 40.0%
TCACCTGAAAACCAAGTGAT+TGG + chr1.2:25454472-25454491 MS.gene053318:intron 40.0%
TCCCTGGATGAAACAATCTT+TGG + chr1.2:25454553-25454572 MS.gene053318:intron 40.0%
TGAAAACTCAGTTCAGCTCA+GGG + chr1.2:25455882-25455901 MS.gene053318:CDS 40.0%
TGAATCCTGATGGAACAAGA+TGG + chr1.2:25454176-25454195 MS.gene053318:CDS 40.0%
TGACGTTAGTAGTTTACAGC+TGG + chr1.2:25453428-25453447 MS.gene053318:intron 40.0%
TGATAGGATTCAGAGATTGC+AGG + chr1.2:25452454-25452473 MS.gene053318:CDS 40.0%
TGGAGAAAACTGCAGACAAA+TGG + chr1.2:25454857-25454876 MS.gene053318:CDS 40.0%
TGTCCGTATCTTTGCATCAT+AGG + chr1.2:25453153-25453172 MS.gene053318:intron 40.0%
TTCCTTCTCGATAACAGGAT+TGG - chr1.2:25453930-25453949 None:intergenic 40.0%
TTGAAAACTCAGTTCAGCTC+AGG + chr1.2:25455881-25455900 MS.gene053318:CDS 40.0%
TTTGAACCTCTAACGATGAC+TGG - chr1.2:25454030-25454049 None:intergenic 40.0%
! AAGAGTCCCATTTTGTGTTC+CGG - chr1.2:25453762-25453781 None:intergenic 40.0%
! CAGGGAAGTACAAAAACCTT+CGG + chr1.2:25455900-25455919 MS.gene053318:CDS 40.0%
! GATTCTAGAGGTTTCAAGTG+AGG + chr1.2:25452427-25452446 MS.gene053318:CDS 40.0%
! TGAGCATGATTTTCAATGGC+AGG + chr1.2:25454816-25454835 MS.gene053318:intron 40.0%
! TTCTTTTCCTCTTCCACAGA+AGG - chr1.2:25454076-25454095 None:intergenic 40.0%
! TTTCAAGTGAGGAACGTGAT+AGG + chr1.2:25452438-25452457 MS.gene053318:CDS 40.0%
!! AACATTGGGTAAGGTTTTGG+AGG - chr1.2:25455409-25455428 None:intergenic 40.0%
!! AGACCAATCACTTGGTTTTC+AGG - chr1.2:25454478-25454497 None:intergenic 40.0%
!! ATCGCAAATGAGCATTGAGT+GGG - chr1.2:25455175-25455194 None:intergenic 40.0%
!! GAACTTGGTTCTGAGAAATC+TGG + chr1.2:25454334-25454353 MS.gene053318:CDS 40.0%
AAAAAGGGAAGCAACGTGGA+GGG - chr1.2:25455355-25455374 None:intergenic 45.0%
AAAAATGTGGTTGGGATGGG+AGG + chr1.2:25453301-25453320 MS.gene053318:intron 45.0%
AAAATGTGGTTGGGATGGGA+GGG + chr1.2:25453302-25453321 MS.gene053318:intron 45.0%
AACTACTTCTGCTGCATGGT+CGG - chr1.2:25454116-25454135 None:intergenic 45.0%
AAGTACGGAAAGAGCAGTAG+TGG + chr1.2:25455784-25455803 MS.gene053318:CDS 45.0%
AATAACGCTAACCTGACGCA+TGG - chr1.2:25454404-25454423 None:intergenic 45.0%
AATGCTCATGGCATCAAGCA+GGG + chr1.2:25455679-25455698 MS.gene053318:CDS 45.0%
ACACAGAAAGATGGTATCCC+AGG + chr1.2:25453800-25453819 MS.gene053318:CDS 45.0%
ACCACTTGAGACCAATCACT+TGG - chr1.2:25454486-25454505 None:intergenic 45.0%
AGAGCAGTAGTGGTGAACAT+TGG + chr1.2:25455794-25455813 MS.gene053318:CDS 45.0%
AGGTGGGGTGAAACATATGA+CGG + chr1.2:25455556-25455575 MS.gene053318:intron 45.0%
AGTAGTTCGAGCCCTTGAAA+TGG + chr1.2:25454129-25454148 MS.gene053318:CDS 45.0%
ATCCTGATGGAACAAGATGG+TGG + chr1.2:25454179-25454198 MS.gene053318:CDS 45.0%
ATTCACTCGCAGATTCTTCC+AGG - chr1.2:25455455-25455474 None:intergenic 45.0%
CAAGAGTCCGGAACACAAAA+TGG + chr1.2:25453752-25453771 MS.gene053318:CDS 45.0%
CACCTACAAATGACACCATC+AGG - chr1.2:25454229-25454248 None:intergenic 45.0%
CACTCAATGCTCATTTGCGA+TGG + chr1.2:25455174-25455193 MS.gene053318:intron 45.0%
CATCTGGTCAAGCTGAGAAA+TGG + chr1.2:25454935-25454954 MS.gene053318:CDS 45.0%
CATGACCAAAAATCAGGACC+TGG - chr1.2:25453821-25453840 None:intergenic 45.0%
CCATCAGGATTCACACCAAT+AGG - chr1.2:25454169-25454188 None:intergenic 45.0%
CCTATTGGTGTGAATCCTGA+TGG + chr1.2:25454166-25454185 MS.gene053318:CDS 45.0%
CTGAGAAATGGGCACACAAA+TGG + chr1.2:25454947-25454966 MS.gene053318:CDS 45.0%
CTGTGTTCTGTTCCTTTGTC+AGG + chr1.2:25455536-25455555 MS.gene053318:intron 45.0%
GACCTTTCCTTCTCGATAAC+AGG - chr1.2:25453935-25453954 None:intergenic 45.0%
GAGCAGTAGTGGTGAACATT+GGG + chr1.2:25455795-25455814 MS.gene053318:CDS 45.0%
GCAGACAAATGGGGAAGAAA+TGG + chr1.2:25454868-25454887 MS.gene053318:CDS 45.0%
GCATGTGAACTTCTCGGATT+AGG + chr1.2:25453002-25453021 MS.gene053318:intron 45.0%
GGAATTGAGCAAAGACCTGA+TGG + chr1.2:25454211-25454230 MS.gene053318:CDS 45.0%
GGACCCAAATCCCTTAACTA+AGG + chr1.2:25453251-25453270 MS.gene053318:intron 45.0%
GGTGTCCATGACCAAAAATC+AGG - chr1.2:25453827-25453846 None:intergenic 45.0%
GTGATGAGTGGCAGGAAAAA+TGG + chr1.2:25454896-25454915 MS.gene053318:CDS 45.0%
GTTCTGTTCCTTTGTCAGGT+GGG + chr1.2:25455540-25455559 MS.gene053318:intron 45.0%
TAAAAAGGGAAGCAACGTGG+AGG - chr1.2:25455356-25455375 None:intergenic 45.0%
TAATGCTCATGGCATCAAGC+AGG + chr1.2:25455678-25455697 MS.gene053318:CDS 45.0%
TCCTTTGCAAACTGTACCCT+TGG + chr1.2:25454737-25454756 MS.gene053318:intron 45.0%
TGGAATCAAGAGAGATTGCG+AGG - chr1.2:25453957-25453976 None:intergenic 45.0%
TGTTCTGTTCCTTTGTCAGG+TGG + chr1.2:25455539-25455558 MS.gene053318:intron 45.0%
TTCTGGTAGAGATCGGTCAT+CGG + chr1.2:25453355-25453374 MS.gene053318:intron 45.0%
TTCTGTTCCTTTGTCAGGTG+GGG + chr1.2:25455541-25455560 MS.gene053318:intron 45.0%
! ACCAAGGGTACAGTTTGCAA+AGG - chr1.2:25454741-25454760 None:intergenic 45.0%
! ACCCTCTTGTTTCCTGAGTT+CGG - chr1.2:25454601-25454620 None:intergenic 45.0%
! GAGCATTACATTGGTCTGAG+TGG + chr1.2:25453224-25453243 MS.gene053318:intron 45.0%
! GCTAGACTTTTCTTACCTCC+TGG + chr1.2:25454575-25454594 MS.gene053318:intron 45.0%
! GTATCCCAGGTCCTGATTTT+TGG + chr1.2:25453813-25453832 MS.gene053318:CDS 45.0%
! TACATTGGTCTGAGTGGAAC+TGG + chr1.2:25453230-25453249 MS.gene053318:intron 45.0%
! TCTGGATGGGTTCACAAGTA+CGG + chr1.2:25455769-25455788 MS.gene053318:CDS 45.0%
! TTCTCGGATTAGGTGTGTCT+CGG + chr1.2:25453012-25453031 MS.gene053318:intron 45.0%
!! AACAAGATGGTGGAGAGAGA+CGG + chr1.2:25454189-25454208 MS.gene053318:CDS 45.0%
!! AAGCGGTGAGTTTGTTGAAG+TGG - chr1.2:25452352-25452371 None:intergenic 45.0%
!! ACCAAGTGATTGGTCTCAAG+TGG + chr1.2:25454482-25454501 MS.gene053318:intron 45.0%
!! AGCAACACAATGGTTCTGGA+TGG + chr1.2:25455755-25455774 MS.gene053318:CDS 45.0%
!! AGCGGTGAGTTTGTTGAAGT+GGG - chr1.2:25452351-25452370 None:intergenic 45.0%
!! CATCGCAAATGAGCATTGAG+TGG - chr1.2:25455176-25455195 None:intergenic 45.0%
!! CTGATGGTGTCATTTGTAGG+TGG + chr1.2:25454227-25454246 MS.gene053318:CDS 45.0%
!! GAAACATATGACGGGTATGG+TGG + chr1.2:25455565-25455584 MS.gene053318:CDS 45.0%
!! GACCTGATGGTGTCATTTGT+AGG + chr1.2:25454224-25454243 MS.gene053318:CDS 45.0%
!! GATTGGTCTCAAGTGGTCAA+TGG + chr1.2:25454489-25454508 MS.gene053318:intron 45.0%
!! GCAACACAATGGTTCTGGAT+GGG + chr1.2:25455756-25455775 MS.gene053318:CDS 45.0%
!! GGAAAACGGGCTAATGCATA+TGG + chr1.2:25454837-25454856 MS.gene053318:intron 45.0%
!! GGTGAAACATATGACGGGTA+TGG + chr1.2:25455562-25455581 MS.gene053318:CDS 45.0%
!! GTGCTGACAAAGCTTTAGAG+TGG + chr1.2:25454269-25454288 MS.gene053318:CDS 45.0%
!! TGTTGGTGTCGAACACTGAT+GGG - chr1.2:25453047-25453066 None:intergenic 45.0%
!! TTTTTGGTCATGGACACCTC+CGG + chr1.2:25453829-25453848 MS.gene053318:CDS 45.0%
!!! CAGGTCCTGATTTTTGGTCA+TGG + chr1.2:25453819-25453838 MS.gene053318:CDS 45.0%
!!! GTGGCAAGAAAAGTTTTGGG+AGG + chr1.2:25454288-25454307 MS.gene053318:CDS 45.0%
!!! TAAGGTTTTGGAGGCTGACA+GGG - chr1.2:25455400-25455419 None:intergenic 45.0%
AAATGTGGTTGGGATGGGAG+GGG + chr1.2:25453303-25453322 MS.gene053318:intron 50.0%
ACCACTCCAGTCATCGTTAG+AGG + chr1.2:25454021-25454040 MS.gene053318:CDS 50.0%
ACCGATCTCTACCAGAAACC+TGG - chr1.2:25453352-25453371 None:intergenic 50.0%
ACCTCTAACGATGACTGGAG+TGG - chr1.2:25454025-25454044 None:intergenic 50.0%
ACTTGGGGTGAGCAACACAA+TGG + chr1.2:25455745-25455764 MS.gene053318:CDS 50.0%
AGAGTCTCCTTCTGTGGAAG+AGG + chr1.2:25454066-25454085 MS.gene053318:CDS 50.0%
CTCCACCATCTTGTTCCATC+AGG - chr1.2:25454184-25454203 None:intergenic 50.0%
CTCGAACTACTTCTGCTGCA+TGG - chr1.2:25454120-25454139 None:intergenic 50.0%
GATCTCTACCAGAAACCTGG+CGG - chr1.2:25453349-25453368 None:intergenic 50.0%
GCCGAACTCAGGAAACAAGA+GGG + chr1.2:25454597-25454616 MS.gene053318:intron 50.0%
GGAGAAATGGGGCGACAAAT+GGG + chr1.2:25455639-25455658 MS.gene053318:CDS 50.0%
GGAGGAACATCACTATCCAC+CGG - chr1.2:25453851-25453870 None:intergenic 50.0%
GGTGAGCAACACAATGGTTC+TGG + chr1.2:25455751-25455770 MS.gene053318:CDS 50.0%
GGTGGGGTGAAACATATGAC+GGG + chr1.2:25455557-25455576 MS.gene053318:intron 50.0%
TAGGGTTCTTGCCTTTCCGA+AGG - chr1.2:25455919-25455938 None:intergenic 50.0%
TCTAACGATGACTGGAGTGG+TGG - chr1.2:25454022-25454041 None:intergenic 50.0%
TGGGAGGCTTCTGATGAGTT+TGG + chr1.2:25454304-25454323 MS.gene053318:CDS 50.0%
TGGTAAAGGTGATGAGTGGC+AGG + chr1.2:25454888-25454907 MS.gene053318:CDS 50.0%
TGTAGGTGGACAGTGATCAG+AGG + chr1.2:25454241-25454260 MS.gene053318:CDS 50.0%
TGTTTCACCCCACCTGACAA+AGG - chr1.2:25455551-25455570 None:intergenic 50.0%
TTGGAGAGAATCCATGCGTC+AGG + chr1.2:25454390-25454409 MS.gene053318:CDS 50.0%
! GGAACACCGAATTTGTTCCC+TGG + chr1.2:25454537-25454556 MS.gene053318:intron 50.0%
! TGCTGCTAGAGCGCTTCTTA+AGG + chr1.2:25452505-25452524 MS.gene053318:CDS 50.0%
!! ACAAGATGGTGGAGAGAGAC+GGG + chr1.2:25454190-25454209 MS.gene053318:CDS 50.0%
!! GCCAGGTTTCTGGTAGAGAT+CGG + chr1.2:25453348-25453367 MS.gene053318:intron 50.0%
!! GTGTTGGTGTCGAACACTGA+TGG - chr1.2:25453048-25453067 None:intergenic 50.0%
!! TAGGGACTGTGGTTTGGTGA+TGG + chr1.2:25452683-25452702 MS.gene053318:intron 50.0%
!!! GTAAGGTTTTGGAGGCTGAC+AGG - chr1.2:25455401-25455420 None:intergenic 50.0%
ACGCTCATGTCTGGCACGAA+AGG + chr1.2:25455007-25455026 MS.gene053318:CDS 55.0%
AGACGGCGGATGGGAGAAAT+GGG + chr1.2:25455627-25455646 MS.gene053318:CDS 55.0%
AGGGGAGACTCCACTATAGG+GGG + chr1.2:25453321-25453340 MS.gene053318:intron 55.0%
CAAACACACCCCTCGATGCT+GGG + chr1.2:25454983-25455002 MS.gene053318:CDS 55.0%
CTTGTTTCCTGAGTTCGGCC+AGG - chr1.2:25454596-25454615 None:intergenic 55.0%
GAGGGGAGACTCCACTATAG+GGG + chr1.2:25453320-25453339 MS.gene053318:intron 55.0%
GATTAGGTGTGTCTCGGCGT+CGG + chr1.2:25453018-25453037 MS.gene053318:intron 55.0%
GGAACATCACTATCCACCGG+AGG - chr1.2:25453848-25453867 None:intergenic 55.0%
GGAGGGGAGACTCCACTATA+GGG + chr1.2:25453319-25453338 MS.gene053318:intron 55.0%
GGCCGAACTCAGGAAACAAG+AGG + chr1.2:25454596-25454615 MS.gene053318:intron 55.0%
GGGAGAAATGGGGCGACAAA+TGG + chr1.2:25455638-25455657 MS.gene053318:CDS 55.0%
GTCAGTGTCCATGTCGTGTC+TGG + chr1.2:25453130-25453149 MS.gene053318:intron 55.0%
TACGGACACCAGACACGACA+TGG - chr1.2:25453141-25453160 None:intergenic 55.0%
! ACGTGGTGGGAAGGTAAGCA+CGG + chr1.2:25455706-25455725 MS.gene053318:CDS 55.0%
! CAGCATCGAGGGGTGTGTTT+GGG - chr1.2:25454984-25455003 None:intergenic 55.0%
! GACTGGAGTGGTGGAAGTGT+AGG - chr1.2:25454013-25454032 None:intergenic 55.0%
! TGTGTTGCTCACCCCAAGTC+CGG - chr1.2:25455744-25455763 None:intergenic 55.0%
!! AGTAGCGGTGTCGTTCGTGT+CGG + chr1.2:25453104-25453123 MS.gene053318:intron 55.0%
!! GGACTGTGGTTTGGTGATGG+AGG + chr1.2:25452686-25452705 MS.gene053318:intron 55.0%
AGCGTTCAACAGACGGCGGA+TGG + chr1.2:25455617-25455636 MS.gene053318:CDS 60.0%
ATGCTGGGCACGCTCATGTC+TGG + chr1.2:25454998-25455017 MS.gene053318:CDS 60.0%
CAAGCAGGGAGAGACGTGGT+GGG + chr1.2:25455693-25455712 MS.gene053318:CDS 60.0%
CAGACGGCGGATGGGAGAAA+TGG + chr1.2:25455626-25455645 MS.gene053318:CDS 60.0%
CCAAACACACCCCTCGATGC+TGG + chr1.2:25454982-25455001 MS.gene053318:CDS 60.0%
CTCACCGCTTCCAACGACGA+CGG + chr1.2:25452362-25452381 MS.gene053318:CDS 60.0%
CTTACCTCCTGGCCGAACTC+AGG + chr1.2:25454586-25454605 MS.gene053318:intron 60.0%
GACGGCGGATGGGAGAAATG+GGG + chr1.2:25455628-25455647 MS.gene053318:CDS 60.0%
GCATCAAGCAGGGAGAGACG+TGG + chr1.2:25455689-25455708 MS.gene053318:CDS 60.0%
GCGTTCAACAGACGGCGGAT+GGG + chr1.2:25455618-25455637 MS.gene053318:CDS 60.0%
GGGAGGGGAGACTCCACTAT+AGG + chr1.2:25453318-25453337 MS.gene053318:intron 60.0%
GGGGAGACTCCACTATAGGG+GGG + chr1.2:25453322-25453341 MS.gene053318:intron 60.0%
GTTTCCTGAGTTCGGCCAGG+AGG - chr1.2:25454593-25454612 None:intergenic 60.0%
TCAAGCAGGGAGAGACGTGG+TGG + chr1.2:25455692-25455711 MS.gene053318:CDS 60.0%
TCCGCCGTCTGTTGAACGCT+CGG - chr1.2:25455617-25455636 None:intergenic 60.0%
TGGGCCGAGCGTTCAACAGA+CGG + chr1.2:25455610-25455629 MS.gene053318:CDS 60.0%
TTGGTCATGGACACCTCCGG+TGG + chr1.2:25453832-25453851 MS.gene053318:CDS 60.0%
! AAGGTAAGCACGGAGAGCGC+TGG + chr1.2:25455716-25455735 MS.gene053318:CDS 60.0%
! ATGAGCGTGCCCAGCATCGA+GGG - chr1.2:25454995-25455014 None:intergenic 60.0%
! CCAGCATCGAGGGGTGTGTT+TGG - chr1.2:25454985-25455004 None:intergenic 60.0%
!! AGAGCGCTGGAACCGGACTT+GGG + chr1.2:25455729-25455748 MS.gene053318:CDS 60.0%
CACGCCGTCGTCGTTGGAAG+CGG - chr1.2:25452369-25452388 None:intergenic 65.0%
CATGAGCGTGCCCAGCATCG+AGG - chr1.2:25454996-25455015 None:intergenic 65.0%
CTCTTCCACGCCGTCGTCGT+TGG - chr1.2:25452375-25452394 None:intergenic 65.0%
GCCGAGCGTTCAACAGACGG+CGG + chr1.2:25455613-25455632 MS.gene053318:CDS 65.0%
! CAGGGAGAGACGTGGTGGGA+AGG + chr1.2:25455697-25455716 MS.gene053318:CDS 65.0%
! TGAGCGTGCCCAGCATCGAG+GGG - chr1.2:25454994-25455013 None:intergenic 65.0%
!! AGCACGGAGAGCGCTGGAAC+CGG + chr1.2:25455722-25455741 MS.gene053318:CDS 65.0%
!! GAGAGCGCTGGAACCGGACT+TGG + chr1.2:25455728-25455747 MS.gene053318:CDS 65.0%
!! GAGCGCTGGAACCGGACTTG+GGG + chr1.2:25455730-25455749 MS.gene053318:CDS 65.0%
AGGGGGGTCCGCCAGGTTTC+TGG + chr1.2:25453338-25453357 MS.gene053318:intron 70.0%
CCACTATAGGGGGGTCCGCC+AGG + chr1.2:25453331-25453350 MS.gene053318:intron 70.0%
CGCTTCCAACGACGACGGCG+TGG + chr1.2:25452367-25452386 MS.gene053318:CDS 70.0%
! CCTGGCGGACCCCCCTATAG+TGG - chr1.2:25453334-25453353 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 25452311 25455939 25452311 ID=MS.gene053318
chr1.2 mRNA 25452311 25455939 25452311 ID=MS.gene053318.t1;Parent=MS.gene053318
chr1.2 exon 25452311 25452578 25452311 ID=MS.gene053318.t1.exon1;Parent=MS.gene053318.t1
chr1.2 CDS 25452311 25452578 25452311 ID=cds.MS.gene053318.t1;Parent=MS.gene053318.t1
chr1.2 exon 25453714 25454411 25453714 ID=MS.gene053318.t1.exon2;Parent=MS.gene053318.t1
chr1.2 CDS 25453714 25454411 25453714 ID=cds.MS.gene053318.t1;Parent=MS.gene053318.t1
chr1.2 exon 25454838 25455028 25454838 ID=MS.gene053318.t1.exon3;Parent=MS.gene053318.t1
chr1.2 CDS 25454838 25455028 25454838 ID=cds.MS.gene053318.t1;Parent=MS.gene053318.t1
chr1.2 exon 25455558 25455939 25455558 ID=MS.gene053318.t1.exon4;Parent=MS.gene053318.t1
chr1.2 CDS 25455558 25455939 25455558 ID=cds.MS.gene053318.t1;Parent=MS.gene053318.t1
Gene Sequence

>MS.gene053318

ATGTGGAAGAAAGCCATAGAACGAGAAAGAAACACAACCCACTTCAACAAACTCACCGCTTCCAACGACGACGGCGTGGAAGAGAATCTAGAGAAGAAAACTCAAGAGTTTCAGAAGATTCTAGAGGTTTCAAGTGAGGAACGTGATAGGATTCAGAGATTGCAGGTTATTGATCGTGCTTCTGCTGCAATTGCTGCTGCTAGAGCGCTTCTTAAGGATGCTAATAGCAATAGTGTTCGTTCTGATGGAGATACGTTACAAAAATATGGTACTTTTTTTGTTTCAATTGCTTCTTTTGTTTGCTTTGAATTTGAATTTTTGTTCTGATTTTTGGTTTTTAGGGTTTTGGATTTTTTGGTTAATTGAATAATGTAGGGACTGTGGTTTGGTGATGGAGGATTAGAGATAGATTCTATGGCTGAGTTGCTTGTGAATTTAATTCCATATAAAATCAACTGGATTATTTTATTTTTGGAAAAATGCTATTTTTTTTTGTTTTTTTTATATTTTATTTCATGAAAACTAGACGATCAAAAATCAGTTTTTATTTATTTATTATTAAGAGTAAAAATTGAATATAAAAGAACAAATCATTTTCACATTAAAAGTGAAAATGCAAAATATTTTCACCAAAATTTCATTAGAGTTTAATCTGGATGCACTTAGCTGTAAATTAGTTTTACACTATGAAGCATGTGAACTTCTCGGATTAGGTGTGTCTCGGCGTCGGACACCCATCAGTGTTCGACACCAACACATATGATTATACCGAATTATTTGGTTTTCTCAAATTAGTAGCGGTGTCGTTCGTGTCGGCGTGTCAGTGTCCATGTCGTGTCTGGTGTCCGTATCTTTGCATCATAGGTTTTACACTAAACTCTAATTAAAACTCCATACATTGCCACATAAGCATGAGCATTACATTGGTCTGAGTGGAACTGGACCCAAATCCCTTAACTAAGGTCTCTGGTTTGAGCCTTGTAGATGAAAAAAAATGTGGTTGGGATGGGAGGGGAGACTCCACTATAGGGGGGTCCGCCAGGTTTCTGGTAGAGATCGGTCATCGGTAAAATAACTGCAAAATATTGATTTTTTTTAGGGGGGACAATATTGAATTTGACGTTAGTAGTTTACAGCTGGGCATATCCCTTTTTCTCATGCCATTATGTAGTATTTTCATTATTTTTTAAATAAAATATTTTAAGACATGATTGAAGTCAAGAAAAGGATATTCTGTGTAGTAAAAAGTGGAAGGAAAACACAAGTTATGTTGAAGTTAATTTTTTTTTCTTAAACTAACAAGGCTCTCATTTTTTTCATTCATCTAAGTTAATGAATGTTGTACACGAAAGATGTTAGTGGTTGTTGATGTGTTGTTTTGTTCATTTTCAATGATCTGACAGAATCAGATTCAGGAAAGAAGAATGACAGTATTTTTGTGCAAGAGTCCGGAACACAAAATGGGACTCTTTTTGTGCCAAAATCAGGAACACAGAAAGATGGTATCCCAGGTCCTGATTTTTGGTCATGGACACCTCCGGTGGATAGTGATGTTCCTCCAAATGATGCTAATGGGTTGAAGTTAGATACCAAGTCTTCAGTTAATCCAACATTATCCAATCCTGTTATCGAGAAGGAAAGGTCCTCGCAATCTCTCTTGATTCCATTTGAGAGTTTACTTACTCAAAGCAAAAACTTTCCTACACTTCCACCACTCCAGTCATCGTTAGAGGTTCAAACCGCTTCTTCAAATGTAGAGTCTCCTTCTGTGGAAGAGGAAAAGAAACGTGATGCGTTATCTTCCGACCATGCAGCAGAAGTAGTTCGAGCCCTTGAAATGGACAGTAAATCATCACCTATTGGTGTGAATCCTGATGGAACAAGATGGTGGAGAGAGACGGGAATTGAGCAAAGACCTGATGGTGTCATTTGTAGGTGGACAGTGATCAGAGGTGTTAGTGCTGACAAAGCTTTAGAGTGGCAAGAAAAGTTTTGGGAGGCTTCTGATGAGTTTGGCTATAAGGAACTTGGTTCTGAGAAATCTGGACGTGATGCAAATGGAAATGTTTGGCGTGAATTTTGGAGAGAATCCATGCGTCAGGTTAGCGTTATTTGATACATTTTGATTTTCATTTTAATTCGTTATTATAGTGTTATATAGTCACCTGAAAACCAAGTGATTGGTCTCAAGTGGTCAATGGACTATACTTAAGGTCGAATCAATCAGGAACACCGAATTTGTTCCCTGGATGAAACAATCTTTGGCTAGACTTTTCTTACCTCCTGGCCGAACTCAGGAAACAAGAGGGTTAAGACCAAAAATTTATAATTATCTGAAATCTGATTAGCATTCTTGTAGCCAATGTTTTTTAAGCACTTCTACAATTGTTCTTAACTTCCCTCATAAATTAGTCGGTATGTAAGCGTCCTTTGCAAACTGTACCCTTGGTGCGTTCATGAATCTTATGAACCTACAGAGTATTGGATACTTAAATAAAATCATACTGAGCATGATTTTCAATGGCAGGAAAACGGGCTAATGCATATGGAGAAAACTGCAGACAAATGGGGAAGAAATGGTAAAGGTGATGAGTGGCAGGAAAAATGGTTTGAACACTACAATGCATCTGGTCAAGCTGAGAAATGGGCACACAAATGGTGCAGTATTGACCCAAACACACCCCTCGATGCTGGGCACGCTCATGTCTGGCACGAAAGGTAACAACAATGTAGAACTAGATTATAATTTGAGTTCTAATCCTCTTTTCATAGTATTTAGCCCTTAAAGGTTTAGTGATCTTTCATTTCTTATGTATGTTTAAGATTCCTTTGTTTGCAAAAAAGGAATTTGAAACATTCATCCCACTCAATGCTCATTTGCGATGGAAAAAATTTAAAACAAACAGGATATAAGCATGTCTCATGGTGAAATAGACTGATCTATTTCGAGCTCAATTTGTGTTATTAATGCTATCAAACTCAAATATATTTTCTTAATGTTTTTTACTGAGCTGCTATGTATGTCATTTTGAGAGTTCACACCCTCCACGTTGCTTCCCTTTTTAATCTAACTTATTCTAAGGCTACCCTGTCAGCCTCCAAAACCTTACCCAATGTTTTGATAAATATTGCAAATAGCTTCCTGGAAGAATCTGCGAGTGAATGAAACTAGTTTATCTTGTATCTTAAGCAATAAGGAGTTACAGCTTGTTCTTTATTTTTAATCTGTGTTCTGTTCCTTTGTCAGGTGGGGTGAAACATATGACGGGTATGGTGGCAGCATAAAATACACTGACAAATGGGCCGAGCGTTCAACAGACGGCGGATGGGAGAAATGGGGCGACAAATGGGATGAAAATTTCGATCTTAATGCTCATGGCATCAAGCAGGGAGAGACGTGGTGGGAAGGTAAGCACGGAGAGCGCTGGAACCGGACTTGGGGTGAGCAACACAATGGTTCTGGATGGGTTCACAAGTACGGAAAGAGCAGTAGTGGTGAACATTGGGACACACACGAAATGCAAGATACTTGGTATGAAAGATTTCCTCATTTTGGTTTCTATCACTGCTTTGAAAACTCAGTTCAGCTCAGGGAAGTACAAAAACCTTCGGAAAGGCAAGAACCCTAA

Protein sequence

>MS.gene053318.t1

MWKKAIERERNTTHFNKLTASNDDGVEENLEKKTQEFQKILEVSSEERDRIQRLQVIDRASAAIAAARALLKDANSNSVRSDGDTLQKYESDSGKKNDSIFVQESGTQNGTLFVPKSGTQKDGIPGPDFWSWTPPVDSDVPPNDANGLKLDTKSSVNPTLSNPVIEKERSSQSLLIPFESLLTQSKNFPTLPPLQSSLEVQTASSNVESPSVEEEKKRDALSSDHAAEVVRALEMDSKSSPIGVNPDGTRWWRETGIEQRPDGVICRWTVIRGVSADKALEWQEKFWEASDEFGYKELGSEKSGRDANGNVWREFWRESMRQENGLMHMEKTADKWGRNGKGDEWQEKWFEHYNASGQAEKWAHKWCSIDPNTPLDAGHAHVWHERWGETYDGYGGSIKYTDKWAERSTDGGWEKWGDKWDENFDLNAHGIKQGETWWEGKHGERWNRTWGEQHNGSGWVHKYGKSSSGEHWDTHEMQDTWYERFPHFGFYHCFENSVQLREVQKPSERQEP