Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24471.t1 | XP_003589079.2 | 98.8 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 1.20E-62 | 250.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24471.t1 | A2ZLU6 | 53.2 | 77 | 35 | 1 | 51 | 127 | 360 | 435 | 6.1e-10 | 66.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24471.t1 | G7ICC9 | 98.8 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 8.9e-63 | 250.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051832 | MS.gene24471 | 0.816806 | 4.57E-52 | -1.69E-46 |
MS.gene053963 | MS.gene24471 | 0.840597 | 7.90E-58 | -1.69E-46 |
MS.gene056973 | MS.gene24471 | 0.803171 | 3.96E-49 | -1.69E-46 |
MS.gene058279 | MS.gene24471 | 0.801748 | 7.78E-49 | -1.69E-46 |
MS.gene05952 | MS.gene24471 | 0.82822 | 1.01E-54 | -1.69E-46 |
MS.gene060937 | MS.gene24471 | 0.803896 | 2.80E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24471.t1 | MTR_1g018180 | 98.837 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 0.0 | 683 |
MS.gene24471.t1 | MTR_3g103050 | 75.831 | 331 | 73 | 4 | 16 | 340 | 5 | 334 | 6.14e-177 | 494 |
MS.gene24471.t1 | MTR_1g069845 | 51.408 | 284 | 137 | 1 | 61 | 344 | 323 | 605 | 1.39e-85 | 270 |
MS.gene24471.t1 | MTR_2g026130 | 52.448 | 286 | 133 | 1 | 61 | 343 | 175 | 460 | 7.81e-85 | 264 |
MS.gene24471.t1 | MTR_1g069845 | 51.408 | 284 | 137 | 1 | 61 | 344 | 440 | 722 | 3.23e-84 | 270 |
MS.gene24471.t1 | MTR_1g069845 | 51.408 | 284 | 137 | 1 | 61 | 344 | 444 | 726 | 4.50e-84 | 269 |
MS.gene24471.t1 | MTR_3g466220 | 53.957 | 278 | 127 | 1 | 61 | 338 | 532 | 808 | 2.52e-81 | 264 |
MS.gene24471.t1 | MTR_3g466220 | 53.957 | 278 | 127 | 1 | 61 | 338 | 553 | 829 | 2.88e-81 | 264 |
MS.gene24471.t1 | MTR_7g097020 | 50.360 | 278 | 137 | 1 | 61 | 338 | 482 | 758 | 1.49e-77 | 253 |
MS.gene24471.t1 | MTR_4g485520 | 48.188 | 276 | 143 | 0 | 61 | 336 | 205 | 480 | 8.94e-74 | 236 |
MS.gene24471.t1 | MTR_4g485520 | 48.188 | 276 | 143 | 0 | 61 | 336 | 373 | 648 | 1.01e-72 | 238 |
MS.gene24471.t1 | MTR_4g063800 | 44.366 | 284 | 158 | 0 | 61 | 344 | 353 | 636 | 2.04e-67 | 224 |
MS.gene24471.t1 | MTR_1g094215 | 44.203 | 276 | 154 | 0 | 61 | 336 | 162 | 437 | 7.32e-63 | 207 |
MS.gene24471.t1 | MTR_7g059405 | 42.652 | 279 | 154 | 2 | 56 | 334 | 360 | 632 | 9.23e-62 | 208 |
MS.gene24471.t1 | MTR_1g094215 | 44.203 | 276 | 154 | 0 | 61 | 336 | 345 | 620 | 4.03e-61 | 206 |
MS.gene24471.t1 | MTR_7g078330 | 40.283 | 283 | 168 | 1 | 54 | 336 | 361 | 642 | 6.79e-61 | 206 |
MS.gene24471.t1 | MTR_5g083030 | 41.034 | 290 | 154 | 6 | 64 | 340 | 408 | 693 | 6.17e-51 | 180 |
MS.gene24471.t1 | MTR_7g116600 | 38.078 | 281 | 163 | 6 | 72 | 343 | 182 | 460 | 1.90e-39 | 145 |
MS.gene24471.t1 | MTR_5g069340 | 35.540 | 287 | 179 | 5 | 61 | 341 | 34 | 320 | 1.31e-37 | 138 |
MS.gene24471.t1 | MTR_7g053260 | 34.909 | 275 | 168 | 7 | 70 | 336 | 180 | 451 | 8.15e-36 | 135 |
MS.gene24471.t1 | MTR_2g018010 | 36.918 | 279 | 168 | 6 | 64 | 336 | 399 | 675 | 3.32e-34 | 133 |
MS.gene24471.t1 | MTR_5g079550 | 33.916 | 286 | 182 | 5 | 55 | 335 | 14 | 297 | 1.05e-29 | 117 |
MS.gene24471.t1 | MTR_3g078340 | 28.727 | 275 | 191 | 2 | 64 | 335 | 214 | 486 | 1.98e-28 | 115 |
MS.gene24471.t1 | MTR_3g078160 | 33.692 | 279 | 171 | 9 | 74 | 342 | 390 | 664 | 8.51e-28 | 114 |
MS.gene24471.t1 | MTR_3g078160 | 33.692 | 279 | 171 | 9 | 74 | 342 | 390 | 664 | 1.21e-27 | 114 |
MS.gene24471.t1 | MTR_8g080280 | 30.938 | 320 | 199 | 9 | 30 | 338 | 404 | 712 | 1.23e-27 | 114 |
MS.gene24471.t1 | MTR_4g107010 | 29.480 | 346 | 225 | 10 | 7 | 343 | 337 | 672 | 4.61e-25 | 106 |
MS.gene24471.t1 | MTR_3g106140 | 29.492 | 295 | 194 | 6 | 61 | 343 | 110 | 402 | 1.05e-24 | 104 |
MS.gene24471.t1 | MTR_1g079450 | 33.564 | 289 | 181 | 6 | 63 | 341 | 156 | 443 | 1.97e-23 | 100 |
MS.gene24471.t1 | MTR_3g085610 | 33.083 | 266 | 166 | 8 | 82 | 338 | 448 | 710 | 4.13e-23 | 100 |
MS.gene24471.t1 | MTR_3g067685 | 34.146 | 287 | 179 | 6 | 61 | 339 | 41 | 325 | 5.57e-23 | 99.0 |
MS.gene24471.t1 | MTR_1g014420 | 29.617 | 287 | 185 | 9 | 63 | 335 | 130 | 413 | 4.68e-22 | 97.4 |
MS.gene24471.t1 | MTR_4g091880 | 33.171 | 205 | 130 | 5 | 142 | 343 | 147 | 347 | 3.18e-19 | 87.8 |
MS.gene24471.t1 | MTR_4g091880 | 32.536 | 209 | 134 | 5 | 138 | 343 | 171 | 375 | 3.96e-19 | 87.8 |
MS.gene24471.t1 | MTR_6g004790 | 30.035 | 283 | 150 | 6 | 64 | 339 | 44 | 285 | 7.03e-19 | 86.7 |
MS.gene24471.t1 | MTR_8g032570 | 29.237 | 236 | 155 | 6 | 101 | 331 | 261 | 489 | 7.17e-19 | 88.2 |
MS.gene24471.t1 | MTR_6g008170 | 24.723 | 271 | 199 | 2 | 64 | 331 | 241 | 509 | 8.88e-19 | 87.8 |
MS.gene24471.t1 | MTR_8g032570 | 29.237 | 236 | 155 | 6 | 101 | 331 | 238 | 466 | 9.41e-19 | 87.8 |
MS.gene24471.t1 | MTR_4g028960 | 32.143 | 280 | 165 | 8 | 72 | 336 | 396 | 665 | 7.02e-18 | 85.1 |
MS.gene24471.t1 | MTR_2g011140 | 29.787 | 282 | 186 | 6 | 60 | 335 | 104 | 379 | 2.94e-17 | 82.4 |
MS.gene24471.t1 | MTR_3g078160 | 38.750 | 160 | 92 | 5 | 74 | 230 | 390 | 546 | 2.18e-16 | 80.5 |
MS.gene24471.t1 | MTR_7g094910 | 28.079 | 203 | 138 | 2 | 61 | 263 | 269 | 463 | 2.12e-14 | 74.7 |
MS.gene24471.t1 | MTR_7g094910 | 28.079 | 203 | 138 | 2 | 61 | 263 | 269 | 463 | 2.23e-14 | 74.7 |
MS.gene24471.t1 | MTR_7g094900 | 28.079 | 203 | 138 | 2 | 61 | 263 | 288 | 482 | 2.31e-14 | 74.7 |
MS.gene24471.t1 | MTR_1g104870 | 26.400 | 250 | 176 | 3 | 74 | 323 | 295 | 536 | 4.62e-14 | 73.6 |
MS.gene24471.t1 | MTR_5g034440 | 26.042 | 288 | 205 | 4 | 64 | 343 | 386 | 673 | 1.22e-13 | 72.4 |
MS.gene24471.t1 | MTR_7g076220 | 23.620 | 326 | 205 | 7 | 61 | 344 | 156 | 479 | 2.07e-13 | 71.6 |
MS.gene24471.t1 | MTR_5g005940 | 26.400 | 250 | 176 | 3 | 74 | 323 | 292 | 533 | 9.44e-13 | 69.7 |
MS.gene24471.t1 | MTR_5g005940 | 26.400 | 250 | 176 | 3 | 74 | 323 | 292 | 533 | 1.41e-12 | 68.9 |
MS.gene24471.t1 | MTR_7g007780 | 33.793 | 145 | 93 | 1 | 99 | 240 | 597 | 741 | 1.02e-11 | 66.6 |
MS.gene24471.t1 | MTR_4g085720 | 35.000 | 140 | 89 | 2 | 198 | 335 | 251 | 390 | 1.15e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24471.t1 | AT3G01400 | 81.250 | 336 | 60 | 2 | 5 | 339 | 10 | 343 | 0.0 | 548 |
MS.gene24471.t1 | AT5G58680 | 73.669 | 338 | 83 | 4 | 5 | 338 | 6 | 341 | 4.17e-177 | 495 |
MS.gene24471.t1 | AT2G23140 | 49.329 | 298 | 144 | 2 | 47 | 338 | 334 | 630 | 3.50e-85 | 270 |
MS.gene24471.t1 | AT2G23140 | 49.329 | 298 | 144 | 2 | 47 | 338 | 334 | 630 | 3.50e-85 | 270 |
MS.gene24471.t1 | AT2G23140 | 47.840 | 324 | 158 | 4 | 25 | 338 | 500 | 822 | 2.95e-83 | 269 |
MS.gene24471.t1 | AT2G23140 | 47.840 | 324 | 158 | 4 | 25 | 338 | 497 | 819 | 3.02e-83 | 269 |
MS.gene24471.t1 | AT2G23140 | 47.840 | 324 | 158 | 4 | 25 | 338 | 497 | 819 | 3.02e-83 | 269 |
MS.gene24471.t1 | AT4G16490 | 51.579 | 285 | 136 | 1 | 61 | 343 | 185 | 469 | 1.01e-82 | 259 |
MS.gene24471.t1 | AT3G54790 | 50.714 | 280 | 136 | 2 | 63 | 341 | 440 | 718 | 1.41e-78 | 254 |
MS.gene24471.t1 | AT5G67340 | 49.822 | 281 | 139 | 2 | 61 | 340 | 423 | 702 | 2.12e-78 | 254 |
MS.gene24471.t1 | AT5G67340 | 33.125 | 160 | 104 | 3 | 61 | 219 | 548 | 705 | 9.11e-11 | 63.5 |
MS.gene24471.t1 | AT5G67340 | 49.822 | 281 | 139 | 2 | 61 | 340 | 423 | 702 | 2.12e-78 | 254 |
MS.gene24471.t1 | AT5G67340 | 33.125 | 160 | 104 | 3 | 61 | 219 | 548 | 705 | 9.11e-11 | 63.5 |
MS.gene24471.t1 | AT3G54790 | 50.714 | 280 | 136 | 2 | 63 | 341 | 476 | 754 | 5.25e-78 | 254 |
MS.gene24471.t1 | AT3G54790 | 50.714 | 280 | 136 | 2 | 63 | 341 | 476 | 754 | 5.25e-78 | 254 |
MS.gene24471.t1 | AT1G23030 | 45.704 | 291 | 155 | 2 | 49 | 336 | 319 | 609 | 1.52e-71 | 234 |
MS.gene24471.t1 | AT1G71020 | 47.482 | 278 | 144 | 2 | 61 | 336 | 195 | 472 | 5.28e-69 | 224 |
MS.gene24471.t1 | AT1G71020 | 47.482 | 278 | 144 | 2 | 61 | 336 | 343 | 620 | 7.81e-68 | 224 |
MS.gene24471.t1 | AT3G46510 | 44.118 | 272 | 152 | 0 | 61 | 332 | 354 | 625 | 7.79e-66 | 219 |
MS.gene24471.t1 | AT2G28830 | 44.322 | 273 | 150 | 2 | 61 | 331 | 285 | 557 | 1.27e-64 | 214 |
MS.gene24471.t1 | AT3G54850 | 46.403 | 278 | 147 | 2 | 60 | 336 | 346 | 622 | 9.22e-61 | 206 |
MS.gene24471.t1 | AT5G42340 | 41.667 | 276 | 161 | 0 | 59 | 334 | 379 | 654 | 1.37e-53 | 187 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 34 | 317 | 3.01e-36 | 134 |
MS.gene24471.t1 | AT3G07360 | 34.146 | 287 | 177 | 7 | 59 | 336 | 169 | 452 | 3.14e-35 | 134 |
MS.gene24471.t1 | AT4G12710 | 35.587 | 281 | 170 | 8 | 68 | 338 | 55 | 334 | 4.62e-32 | 124 |
MS.gene24471.t1 | AT3G03440 | 32.872 | 289 | 185 | 6 | 61 | 342 | 66 | 352 | 6.00e-30 | 118 |
MS.gene24471.t1 | AT1G29340 | 38.489 | 278 | 165 | 6 | 64 | 336 | 411 | 687 | 2.13e-29 | 119 |
MS.gene24471.t1 | AT1G67530 | 32.975 | 279 | 177 | 6 | 71 | 341 | 436 | 712 | 6.40e-28 | 115 |
MS.gene24471.t1 | AT1G67530 | 32.975 | 279 | 177 | 6 | 71 | 341 | 436 | 712 | 6.40e-28 | 115 |
MS.gene24471.t1 | AT1G67530 | 32.975 | 279 | 177 | 6 | 71 | 341 | 436 | 712 | 6.40e-28 | 115 |
MS.gene24471.t1 | AT5G40140 | 31.047 | 277 | 183 | 4 | 64 | 335 | 233 | 506 | 2.71e-27 | 112 |
MS.gene24471.t1 | AT5G62560 | 30.216 | 278 | 187 | 4 | 63 | 335 | 238 | 513 | 2.88e-27 | 112 |
MS.gene24471.t1 | AT5G14510 | 34.050 | 279 | 173 | 7 | 64 | 335 | 5 | 279 | 2.79e-25 | 104 |
MS.gene24471.t1 | AT1G27910 | 31.126 | 302 | 192 | 7 | 51 | 338 | 407 | 706 | 1.01e-24 | 105 |
MS.gene24471.t1 | AT1G24330 | 31.939 | 263 | 170 | 6 | 83 | 338 | 448 | 708 | 3.13e-23 | 101 |
MS.gene24471.t1 | AT1G24330 | 31.939 | 263 | 170 | 6 | 83 | 338 | 448 | 708 | 3.13e-23 | 101 |
MS.gene24471.t1 | AT4G31890 | 31.970 | 269 | 168 | 8 | 79 | 335 | 163 | 428 | 1.54e-22 | 99.0 |
MS.gene24471.t1 | AT4G31890 | 31.970 | 269 | 168 | 8 | 79 | 335 | 163 | 428 | 1.54e-22 | 99.0 |
MS.gene24471.t1 | AT4G31890 | 31.970 | 269 | 168 | 8 | 79 | 335 | 163 | 428 | 1.54e-22 | 99.0 |
MS.gene24471.t1 | AT5G18320 | 28.713 | 303 | 190 | 9 | 57 | 336 | 149 | 448 | 9.76e-21 | 93.2 |
MS.gene24471.t1 | AT5G65200 | 26.573 | 286 | 193 | 4 | 64 | 336 | 229 | 510 | 2.38e-20 | 92.4 |
MS.gene24471.t1 | AT4G21350 | 32.042 | 284 | 185 | 5 | 55 | 334 | 88 | 367 | 3.93e-20 | 90.5 |
MS.gene24471.t1 | AT3G47820 | 30.545 | 275 | 176 | 7 | 71 | 335 | 218 | 487 | 7.81e-20 | 90.9 |
MS.gene24471.t1 | AT1G10560 | 28.621 | 290 | 195 | 7 | 64 | 342 | 393 | 681 | 1.21e-19 | 90.5 |
MS.gene24471.t1 | AT2G25130 | 29.699 | 266 | 173 | 7 | 82 | 335 | 132 | 395 | 2.85e-19 | 89.0 |
MS.gene24471.t1 | AT5G01830 | 30.657 | 274 | 173 | 8 | 72 | 336 | 380 | 645 | 9.23e-19 | 87.8 |
MS.gene24471.t1 | AT1G60190 | 27.208 | 283 | 191 | 9 | 74 | 342 | 389 | 670 | 3.91e-17 | 83.2 |
MS.gene24471.t1 | AT5G13060 | 25.941 | 239 | 155 | 3 | 61 | 292 | 311 | 534 | 5.31e-14 | 73.6 |
MS.gene24471.t1 | AT5G50900 | 28.679 | 265 | 180 | 5 | 62 | 320 | 147 | 408 | 1.75e-13 | 71.6 |
MS.gene24471.t1 | AT2G27430 | 26.689 | 296 | 202 | 6 | 55 | 341 | 73 | 362 | 2.84e-13 | 70.9 |
MS.gene24471.t1 | AT3G19380 | 27.863 | 262 | 171 | 7 | 72 | 318 | 121 | 379 | 2.23e-12 | 68.2 |
MS.gene24471.t1 | AT1G77460 | 29.317 | 249 | 156 | 7 | 97 | 335 | 467 | 705 | 2.62e-12 | 68.6 |
MS.gene24471.t1 | AT1G77460 | 29.317 | 249 | 156 | 7 | 97 | 335 | 467 | 705 | 2.62e-12 | 68.6 |
MS.gene24471.t1 | AT1G77460 | 29.317 | 249 | 156 | 7 | 97 | 335 | 467 | 705 | 2.62e-12 | 68.6 |
MS.gene24471.t1 | AT1G77460 | 29.317 | 249 | 156 | 7 | 97 | 335 | 467 | 705 | 2.62e-12 | 68.6 |
MS.gene24471.t1 | AT1G01830 | 27.755 | 245 | 171 | 5 | 48 | 287 | 155 | 398 | 2.96e-12 | 68.2 |
MS.gene24471.t1 | AT1G01830 | 27.755 | 245 | 171 | 5 | 48 | 287 | 155 | 398 | 2.96e-12 | 68.2 |
MS.gene24471.t1 | AT1G01830 | 27.755 | 245 | 171 | 5 | 48 | 287 | 155 | 398 | 2.96e-12 | 68.2 |
MS.gene24471.t1 | AT2G44900 | 33.103 | 145 | 94 | 1 | 99 | 240 | 608 | 752 | 7.42e-12 | 67.0 |
MS.gene24471.t1 | AT2G44900 | 33.103 | 145 | 94 | 1 | 99 | 240 | 608 | 752 | 7.42e-12 | 67.0 |
MS.gene24471.t1 | AT3G60350 | 34.932 | 146 | 90 | 2 | 99 | 240 | 599 | 743 | 3.67e-11 | 65.1 |
MS.gene24471.t1 | AT3G60350 | 34.932 | 146 | 90 | 2 | 99 | 240 | 599 | 743 | 3.67e-11 | 65.1 |
MS.gene24471.t1 | AT1G61350 | 23.404 | 282 | 163 | 9 | 58 | 330 | 143 | 380 | 6.69e-11 | 63.9 |
MS.gene24471.t1 | AT5G18330 | 27.778 | 270 | 169 | 8 | 57 | 306 | 142 | 405 | 8.26e-11 | 63.2 |
Find 87 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCGGTGCAATTCCGTTAT+TGG | 0.216994 | 1.1:+4573801 | MS.gene24471:CDS |
CCGTTATTGGTGAATCTTCT+AGG | 0.217498 | 1.1:+4573814 | MS.gene24471:CDS |
GAAGTAACTAACGAAATTAA+TGG | 0.228085 | 1.1:-4573486 | None:intergenic |
TGAAGGTGCCATTCCTCCTT+TGG | 0.322339 | 1.1:+4574173 | MS.gene24471:CDS |
TTAGTTAGAGCGTTAAATTC+AGG | 0.337381 | 1.1:+4573612 | MS.gene24471:CDS |
ATTACAGGTGGAAGAGAATA+AGG | 0.368476 | 1.1:+4573765 | MS.gene24471:intron |
TTGGTTGAGATTGTGGAGGT+TGG | 0.376021 | 1.1:+4574066 | MS.gene24471:CDS |
CACCGTATTCTTGAAGTTGC+AGG | 0.379035 | 1.1:-4573515 | None:intergenic |
GAAAGTGTTGGTTGAGTTGA+TGG | 0.405212 | 1.1:+4573936 | MS.gene24471:CDS |
ATCGAATATGGTGGATAAAT+CGG | 0.413047 | 1.1:+4573969 | MS.gene24471:CDS |
CACCATATTCGATTCAAAAT+CGG | 0.413357 | 1.1:-4573959 | None:intergenic |
TTTCTGTTCTTCGATTGAAT+CGG | 0.431111 | 1.1:-4573382 | None:intergenic |
GGAAGTTGAATCGTCGTTGA+TGG | 0.431808 | 1.1:-4573223 | None:intergenic |
TGCTCTCCTTCGTCTATCTC+AGG | 0.438091 | 1.1:+4573665 | MS.gene24471:CDS |
CGAATCAAAATTGCTAAAGC+TGG | 0.447290 | 1.1:+4573453 | MS.gene24471:CDS |
TGGAGGAATACGCGGGAAGA+AGG | 0.449541 | 1.1:+4573840 | MS.gene24471:CDS |
AAAGAACTAATAGCTTCTTC+CGG | 0.451795 | 1.1:+4573576 | MS.gene24471:CDS |
CACAAATCGCGCCAAACAAA+AGG | 0.454708 | 1.1:+4574215 | MS.gene24471:CDS |
AACTAACGGTTTAATAGCTC+CGG | 0.461417 | 1.1:-4573595 | None:intergenic |
TTGGTTGCTTTGACGCAGTC+CGG | 0.462970 | 1.1:+4574192 | MS.gene24471:CDS |
CGCAGGCGAGGAAGAGTCGT+CGG | 0.463723 | 1.1:-4573308 | None:intergenic |
GGAGGCGAAGGTTGCGTTGG+TGG | 0.465398 | 1.1:+4574023 | MS.gene24471:CDS |
TTGTTTGGCGCGATTTGTGC+CGG | 0.465975 | 1.1:-4574211 | None:intergenic |
GAGTGTGTTGGTATCGGTGC+CGG | 0.474240 | 1.1:+4574002 | MS.gene24471:CDS |
TTGGTGAATCTTCTAGGAAG+TGG | 0.474246 | 1.1:+4573820 | MS.gene24471:CDS |
CCTAGAAGATTCACCAATAA+CGG | 0.474649 | 1.1:-4573814 | None:intergenic |
AAGATGAGAGCGGTGAAAGC+GGG | 0.475585 | 1.1:+4573907 | MS.gene24471:CDS |
ACCAACGCAACCTTCGCCTC+CGG | 0.483680 | 1.1:-4574021 | None:intergenic |
GGTATCGGTGCCGGAGGCGA+AGG | 0.495124 | 1.1:+4574011 | MS.gene24471:CDS |
AATTTCGTTAGTTACTTCAC+AGG | 0.505937 | 1.1:+4573491 | MS.gene24471:CDS |
GCAGGCGAGGAAGAGTCGTC+GGG | 0.507232 | 1.1:-4573307 | None:intergenic |
GCCGGTGTTGGTTGAGATTG+TGG | 0.507527 | 1.1:+4574059 | MS.gene24471:CDS |
GAAGAGAATAAGGCGGCGAT+TGG | 0.512269 | 1.1:+4573775 | MS.gene24471:CDS |
TAGCGCGGCGGTTCGATCCA+TGG | 0.519060 | 1.1:+4574143 | MS.gene24471:CDS |
TCTGATGTACGTGTAGATCT+TGG | 0.520804 | 1.1:-4575503 | None:intergenic |
CGGGAAGAAGGACGCGTCTA+CGG | 0.528830 | 1.1:+4573852 | MS.gene24471:CDS |
GACTGCAACAGTGACAGATC+CGG | 0.529495 | 1.1:+4573258 | MS.gene24471:CDS |
CAAAGCAACCAAAGGAGGAA+TGG | 0.530629 | 1.1:-4574181 | None:intergenic |
AACAGAGAGTTACACATACA+TGG | 0.531557 | 1.1:+4573179 | MS.gene24471:CDS |
AGAAGTGGTGGCGAATTCGC+CGG | 0.533976 | 1.1:-4573277 | None:intergenic |
CGATCCATGGTGGCTCGTGA+AGG | 0.535543 | 1.1:+4574156 | MS.gene24471:CDS |
ATTGCTCGCAAAGAATAAAC+CGG | 0.537284 | 1.1:+4573425 | MS.gene24471:CDS |
AAGGCGGCGATTGGAAGATC+CGG | 0.537481 | 1.1:+4573784 | MS.gene24471:CDS |
GATTGAATCGGAGTGAAGAT+CGG | 0.537748 | 1.1:-4573370 | None:intergenic |
AAGGTTGCGTTGGTGGAAGA+AGG | 0.538669 | 1.1:+4574030 | MS.gene24471:CDS |
GCCGGAGGCGAAGGTTGCGT+TGG | 0.541900 | 1.1:+4574020 | MS.gene24471:CDS |
TGCGAGCAATCGAATTTCCA+TGG | 0.550132 | 1.1:-4573412 | None:intergenic |
GAAGATCGGAGACAAGTTGA+CGG | 0.556676 | 1.1:-4573356 | None:intergenic |
GACCTGCAACTTCAAGAATA+CGG | 0.556927 | 1.1:+4573513 | MS.gene24471:CDS |
AGAAGGTGGTGTGCCGGTGT+TGG | 0.561302 | 1.1:+4574047 | MS.gene24471:CDS |
AGAACAGAAACAAGCTGCCA+TGG | 0.562865 | 1.1:+4573395 | MS.gene24471:CDS |
GAATTTAACGCTCTAACTAA+CGG | 0.564280 | 1.1:-4573609 | None:intergenic |
GGTGGAAGAAGGTGGTGTGC+CGG | 0.565802 | 1.1:+4574041 | MS.gene24471:CDS |
TCGTCGGGAGGTAGAAGAAG+TGG | 0.568427 | 1.1:-4573292 | None:intergenic |
CACCAATAACGGAATTGCAC+CGG | 0.579118 | 1.1:-4573803 | None:intergenic |
TCCACAATCTCAACCAACAC+CGG | 0.586132 | 1.1:-4574060 | None:intergenic |
GTATACTCTGTGTTCTGTGA+AGG | 0.596489 | 1.1:+4573879 | MS.gene24471:CDS |
CTAGGAAGTGGAGGAATACG+CGG | 0.602566 | 1.1:+4573832 | MS.gene24471:CDS |
TAAGATGAGAGCGGTGAAAG+CGG | 0.603828 | 1.1:+4573906 | MS.gene24471:CDS |
GGTTGGATCGCAGAGACAGA+AGG | 0.604932 | 1.1:+4574083 | MS.gene24471:CDS |
GGCACCTTCACGAGCCACCA+TGG | 0.605176 | 1.1:-4574160 | None:intergenic |
TATTCTGTTACAGATTTGTG+AGG | 0.606208 | 1.1:+4574119 | MS.gene24471:CDS |
GTTGCGTTGGTGGAAGAAGG+TGG | 0.609924 | 1.1:+4574033 | MS.gene24471:CDS |
TGCGTCAAAGCAACCAAAGG+AGG | 0.612998 | 1.1:-4574186 | None:intergenic |
ACTGTTGCAGTCACTGAAAG+CGG | 0.614710 | 1.1:-4573247 | None:intergenic |
GGCGAGGAAGAGTCGTCGGG+AGG | 0.616350 | 1.1:-4573304 | None:intergenic |
AGAAACTAATTGAGCTTCTG+CGG | 0.619048 | 1.1:+4575477 | MS.gene24471:CDS |
GTGAATCTTCTAGGAAGTGG+AGG | 0.623068 | 1.1:+4573823 | MS.gene24471:CDS |
AGATGAGAGCGGTGAAAGCG+GGG | 0.626464 | 1.1:+4573908 | MS.gene24471:CDS |
GACTGCGTCAAAGCAACCAA+AGG | 0.631800 | 1.1:-4574189 | None:intergenic |
AGCGGGGATAATGAAAGTGT+TGG | 0.635236 | 1.1:+4573924 | MS.gene24471:CDS |
TAGGAAGTGGAGGAATACGC+GGG | 0.637423 | 1.1:+4573833 | MS.gene24471:CDS |
TGTGTTGGTATCGGTGCCGG+AGG | 0.656005 | 1.1:+4574005 | MS.gene24471:CDS |
TCGGGAGGTAGAAGAAGTGG+TGG | 0.663074 | 1.1:-4573289 | None:intergenic |
GCAGAGACAGAAGGAAATTG+CGG | 0.663880 | 1.1:+4574092 | MS.gene24471:CDS |
ACAGAGAGTTACACATACAT+GGG | 0.672322 | 1.1:+4573180 | MS.gene24471:CDS |
AAGTTGACGGATGAGATCAT+CGG | 0.674857 | 1.1:-4573343 | None:intergenic |
TAATAACCTGAGATAGACGA+AGG | 0.681280 | 1.1:-4573671 | None:intergenic |
ACAGATTTGTGAGGATAGCG+CGG | 0.684005 | 1.1:+4574128 | MS.gene24471:CDS |
GTTGCAGTCACTGAAAGCGG+AGG | 0.687507 | 1.1:-4573244 | None:intergenic |
CGCGGCGGTTCGATCCATGG+TGG | 0.687911 | 1.1:+4574146 | MS.gene24471:CDS |
CAAAGAGAGATTCAAAATCG+CGG | 0.688714 | 1.1:-4573541 | None:intergenic |
GGTGTTGGTTGAGATTGTGG+AGG | 0.688844 | 1.1:+4574062 | MS.gene24471:CDS |
GAAGGAGAATAAGATGAGAG+CGG | 0.703303 | 1.1:+4573897 | MS.gene24471:CDS |
GAGACAGAAGGAAATTGCGG+CGG | 0.714686 | 1.1:+4574095 | MS.gene24471:CDS |
ACAGGTGGAAGAGAATAAGG+CGG | 0.742349 | 1.1:+4573768 | MS.gene24471:intron |
GATTTGTGAGGATAGCGCGG+CGG | 0.801712 | 1.1:+4574131 | MS.gene24471:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATAAATTAATAATAATGC+AGG | - | chr1.1:4575089-4575108 | None:intergenic | 10.0% |
!!! | ATTTAATATTTTAAACTAAG+TGG | - | chr1.1:4574860-4574879 | None:intergenic | 10.0% |
!! | AATAATTAACTAGATATCAA+TGG | + | chr1.1:4574739-4574758 | MS.gene24471:intron | 15.0% |
!!! | TAATAATGTTTTTCTGTTTT+TGG | + | chr1.1:4575441-4575460 | MS.gene24471:intron | 15.0% |
!!! | TTTGTTTTCAATTTAATTAG+AGG | + | chr1.1:4574694-4574713 | MS.gene24471:intron | 15.0% |
!! | CTTGAATATTCTTATTGAAT+GGG | + | chr1.1:4575267-4575286 | MS.gene24471:intron | 20.0% |
!! | TCTTGAATATTCTTATTGAA+TGG | + | chr1.1:4575266-4575285 | MS.gene24471:intron | 20.0% |
!! | TTGTACTAAATTTGAATTGA+TGG | - | chr1.1:4574720-4574739 | None:intergenic | 20.0% |
!!! | ATAATATTCTACCTTTTGTT+TGG | - | chr1.1:4574229-4574248 | None:intergenic | 20.0% |
!!! | TTGATTATTGTAAGTTCTAA+CGG | + | chr1.1:4573737-4573756 | MS.gene24471:intron | 20.0% |
! | AAAAGAAGAGTTTCGATTTA+GGG | - | chr1.1:4574493-4574512 | None:intergenic | 25.0% |
! | ATTAGACACAATTAGACAAT+AGG | - | chr1.1:4575034-4575053 | None:intergenic | 25.0% |
! | CATTCATTAAATGATGTATG+TGG | + | chr1.1:4575179-4575198 | MS.gene24471:intron | 25.0% |
! | GAAGTAACTAACGAAATTAA+TGG | - | chr1.1:4573489-4573508 | None:intergenic | 25.0% |
! | GACAACAACTAATAATTAAC+CGG | - | chr1.1:4573716-4573735 | None:intergenic | 25.0% |
! | GATGTAATAGTTAGTTATAC+CGG | + | chr1.1:4573694-4573713 | MS.gene24471:intron | 25.0% |
! | GTAATATACATCATATCATC+CGG | + | chr1.1:4575122-4575141 | MS.gene24471:intron | 25.0% |
! | TTAGACACAATTAGACAATA+GGG | - | chr1.1:4575033-4575052 | None:intergenic | 25.0% |
!! | ATTTTGCTTATAATAGTGAC+CGG | + | chr1.1:4575229-4575248 | MS.gene24471:intron | 25.0% |
!! | ATTTTGCTTATAATAGTGAC+CGG | - | chr1.1:4575248-4575229 | None:intergenic | 25.0% |
!!! | AATGTTTTTCTGTTTTTGGT+GGG | + | chr1.1:4575445-4575464 | MS.gene24471:intron | 25.0% |
!!! | TAATGTTTTTCTGTTTTTGG+TGG | + | chr1.1:4575444-4575463 | MS.gene24471:intron | 25.0% |
!!! | TCCTGAATTTTGTTTTTACT+CGG | + | chr1.1:4574376-4574395 | MS.gene24471:intron | 25.0% |
AAAGAACTAATAGCTTCTTC+CGG | + | chr1.1:4573576-4573595 | MS.gene24471:CDS | 30.0% | |
AATTTCGTTAGTTACTTCAC+AGG | + | chr1.1:4573491-4573510 | MS.gene24471:CDS | 30.0% | |
CACCATATTCGATTCAAAAT+CGG | - | chr1.1:4573962-4573981 | None:intergenic | 30.0% | |
GAAAAGAAGAGTTTCGATTT+AGG | - | chr1.1:4574494-4574513 | None:intergenic | 30.0% | |
GAATTTAACGCTCTAACTAA+CGG | - | chr1.1:4573612-4573631 | None:intergenic | 30.0% | |
GCTAGTTCGATTTAGATTAT+TGG | + | chr1.1:4574398-4574417 | MS.gene24471:intron | 30.0% | |
TATTCTGTTACAGATTTGTG+AGG | + | chr1.1:4574119-4574138 | MS.gene24471:CDS | 30.0% | |
TTCATTATTGTCCAAACATG+TGG | - | chr1.1:4575377-4575396 | None:intergenic | 30.0% | |
TTTCTGTTCTTCGATTGAAT+CGG | - | chr1.1:4573385-4573404 | None:intergenic | 30.0% | |
! | CAAGATTTTACGAAATACAC+CGG | - | chr1.1:4575251-4575270 | None:intergenic | 30.0% |
! | TTAGTTAGAGCGTTAAATTC+AGG | + | chr1.1:4573612-4573631 | MS.gene24471:CDS | 30.0% |
! | TTTAAGACCTATTTATGTCG+TGG | + | chr1.1:4575301-4575320 | MS.gene24471:intron | 30.0% |
!! | ATCGAATATGGTGGATAAAT+CGG | + | chr1.1:4573969-4573988 | MS.gene24471:CDS | 30.0% |
!!! | GCAATTTTGATTCGATTTTC+CGG | - | chr1.1:4573447-4573466 | None:intergenic | 30.0% |
AACAGAGAGTTACACATACA+TGG | + | chr1.1:4573179-4573198 | MS.gene24471:CDS | 35.0% | |
AACTAACGGTTTAATAGCTC+CGG | - | chr1.1:4573598-4573617 | None:intergenic | 35.0% | |
ACAGAGAGTTACACATACAT+GGG | + | chr1.1:4573180-4573199 | MS.gene24471:CDS | 35.0% | |
AGAAACTAATTGAGCTTCTG+CGG | + | chr1.1:4575477-4575496 | MS.gene24471:CDS | 35.0% | |
AGACAATAGGGCAAAAATTG+CGG | - | chr1.1:4575021-4575040 | None:intergenic | 35.0% | |
ATTACAGGTGGAAGAGAATA+AGG | + | chr1.1:4573765-4573784 | MS.gene24471:intron | 35.0% | |
ATTGCTCGCAAAGAATAAAC+CGG | + | chr1.1:4573425-4573444 | MS.gene24471:CDS | 35.0% | |
CAAAGAGAGATTCAAAATCG+CGG | - | chr1.1:4573544-4573563 | None:intergenic | 35.0% | |
CCTAGAAGATTCACCAATAA+CGG | - | chr1.1:4573817-4573836 | None:intergenic | 35.0% | |
CGAATCAAAATTGCTAAAGC+TGG | + | chr1.1:4573453-4573472 | MS.gene24471:CDS | 35.0% | |
GCCGAGTAAAAACAAAATTC+AGG | - | chr1.1:4574380-4574399 | None:intergenic | 35.0% | |
GTTCTAACGGTAATGATTAC+AGG | + | chr1.1:4573750-4573769 | MS.gene24471:intron | 35.0% | |
TAAGCTTCCACGACATAAAT+AGG | - | chr1.1:4575311-4575330 | None:intergenic | 35.0% | |
TAATAACCTGAGATAGACGA+AGG | - | chr1.1:4573674-4573693 | None:intergenic | 35.0% | |
! | CGATTTTGAATCGAATATGG+TGG | + | chr1.1:4573960-4573979 | MS.gene24471:CDS | 35.0% |
! | GATGAGATCATCGGAATTTT+CGG | - | chr1.1:4573337-4573356 | None:intergenic | 35.0% |
!! | TGTTTTGAGTGTGTTGGTAT+CGG | + | chr1.1:4573996-4574015 | MS.gene24471:CDS | 35.0% |
AAGAACAACGAGTCAATACG+TGG | - | chr1.1:4574978-4574997 | None:intergenic | 40.0% | |
AATAGGGCAAAAATTGCGGT+GGG | - | chr1.1:4575017-4575036 | None:intergenic | 40.0% | |
CAAACATGTGGCACTACTAT+AGG | - | chr1.1:4575365-4575384 | None:intergenic | 40.0% | |
CCGTTATTGGTGAATCTTCT+AGG | + | chr1.1:4573814-4573833 | MS.gene24471:CDS | 40.0% | |
CTAACGGTAATGATTACAGG+TGG | + | chr1.1:4573753-4573772 | MS.gene24471:intron | 40.0% | |
CTATAGTAGTGCCACATGTT+TGG | + | chr1.1:4575363-4575382 | MS.gene24471:intron | 40.0% | |
GAAGGAGAATAAGATGAGAG+CGG | + | chr1.1:4573897-4573916 | MS.gene24471:CDS | 40.0% | |
GACCTGCAACTTCAAGAATA+CGG | + | chr1.1:4573513-4573532 | MS.gene24471:CDS | 40.0% | |
GATTGAATCGGAGTGAAGAT+CGG | - | chr1.1:4573373-4573392 | None:intergenic | 40.0% | |
GTATACTCTGTGTTCTGTGA+AGG | + | chr1.1:4573879-4573898 | MS.gene24471:CDS | 40.0% | |
TCTGATGTACGTGTAGATCT+TGG | - | chr1.1:4575506-4575525 | None:intergenic | 40.0% | |
TCTTCCACCAACGCAATAAA+CGG | - | chr1.1:4574945-4574964 | None:intergenic | 40.0% | |
TTTGTCGTATGAACGCAATG+AGG | - | chr1.1:4575066-4575085 | None:intergenic | 40.0% | |
! | AAGTTGACGGATGAGATCAT+CGG | - | chr1.1:4573346-4573365 | None:intergenic | 40.0% |
! | TTGGTGAATCTTCTAGGAAG+TGG | + | chr1.1:4573820-4573839 | MS.gene24471:CDS | 40.0% |
!! | GAAAGTGTTGGTTGAGTTGA+TGG | + | chr1.1:4573936-4573955 | MS.gene24471:CDS | 40.0% |
!! | GGCCGATTTTGAATCGAATA+TGG | + | chr1.1:4573957-4573976 | MS.gene24471:CDS | 40.0% |
!! | GGCTTATGTTTTGAGTGTGT+TGG | + | chr1.1:4573990-4574009 | MS.gene24471:CDS | 40.0% |
!!! | TTTCTGTTTTTGGTGGGTTC+AGG | + | chr1.1:4575451-4575470 | MS.gene24471:intron | 40.0% |
ACAGATTTGTGAGGATAGCG+CGG | + | chr1.1:4574128-4574147 | MS.gene24471:CDS | 45.0% | |
ACAGGTGGAAGAGAATAAGG+CGG | + | chr1.1:4573768-4573787 | MS.gene24471:intron | 45.0% | |
ACTGTTGCAGTCACTGAAAG+CGG | - | chr1.1:4573250-4573269 | None:intergenic | 45.0% | |
AGAACAGAAACAAGCTGCCA+TGG | + | chr1.1:4573395-4573414 | MS.gene24471:CDS | 45.0% | |
ATCCGGTGCAATTCCGTTAT+TGG | + | chr1.1:4573801-4573820 | MS.gene24471:CDS | 45.0% | |
CAAAGCAACCAAAGGAGGAA+TGG | - | chr1.1:4574184-4574203 | None:intergenic | 45.0% | |
CAATAGGGCAAAAATTGCGG+TGG | - | chr1.1:4575018-4575037 | None:intergenic | 45.0% | |
CACAAATCGCGCCAAACAAA+AGG | + | chr1.1:4574215-4574234 | MS.gene24471:CDS | 45.0% | |
CACCGTATTCTTGAAGTTGC+AGG | - | chr1.1:4573518-4573537 | None:intergenic | 45.0% | |
GCAGAGACAGAAGGAAATTG+CGG | + | chr1.1:4574092-4574111 | MS.gene24471:CDS | 45.0% | |
GGAAGTTGAATCGTCGTTGA+TGG | - | chr1.1:4573226-4573245 | None:intergenic | 45.0% | |
TAAGATGAGAGCGGTGAAAG+CGG | + | chr1.1:4573906-4573925 | MS.gene24471:CDS | 45.0% | |
TCCACAATCTCAACCAACAC+CGG | - | chr1.1:4574063-4574082 | None:intergenic | 45.0% | |
TGCGAGCAATCGAATTTCCA+TGG | - | chr1.1:4573415-4573434 | None:intergenic | 45.0% | |
TGTCGTGGAAGCTTATCATG+CGG | + | chr1.1:4575316-4575335 | MS.gene24471:intron | 45.0% | |
TTGCATTCGAACCAATGACC+TGG | - | chr1.1:4574791-4574810 | None:intergenic | 45.0% | |
TTGGTTGAGATTGTGGAGGT+TGG | + | chr1.1:4574066-4574085 | MS.gene24471:CDS | 45.0% | |
! | AGCGGGGATAATGAAAGTGT+TGG | + | chr1.1:4573924-4573943 | MS.gene24471:CDS | 45.0% |
! | CACCAATAACGGAATTGCAC+CGG | - | chr1.1:4573806-4573825 | None:intergenic | 45.0% |
! | GAAGATCGGAGACAAGTTGA+CGG | - | chr1.1:4573359-4573378 | None:intergenic | 45.0% |
! | GTGAATCTTCTAGGAAGTGG+AGG | + | chr1.1:4573823-4573842 | MS.gene24471:CDS | 45.0% |
AAGATGAGAGCGGTGAAAGC+GGG | + | chr1.1:4573907-4573926 | MS.gene24471:CDS | 50.0% | |
AGCATTGCTCCCTCAACTTG+CGG | + | chr1.1:4574900-4574919 | MS.gene24471:intron | 50.0% | |
CTAGGAAGTGGAGGAATACG+CGG | + | chr1.1:4573832-4573851 | MS.gene24471:CDS | 50.0% | |
GAAGAGAATAAGGCGGCGAT+TGG | + | chr1.1:4573775-4573794 | MS.gene24471:CDS | 50.0% | |
GACTGCAACAGTGACAGATC+CGG | + | chr1.1:4573258-4573277 | MS.gene24471:CDS | 50.0% | |
GACTGCGTCAAAGCAACCAA+AGG | - | chr1.1:4574192-4574211 | None:intergenic | 50.0% | |
GAGACAGAAGGAAATTGCGG+CGG | + | chr1.1:4574095-4574114 | MS.gene24471:CDS | 50.0% | |
TAGGAAGTGGAGGAATACGC+GGG | + | chr1.1:4573833-4573852 | MS.gene24471:CDS | 50.0% | |
TGCGTCAAAGCAACCAAAGG+AGG | - | chr1.1:4574189-4574208 | None:intergenic | 50.0% | |
TGCTCTCCTTCGTCTATCTC+AGG | + | chr1.1:4573665-4573684 | MS.gene24471:CDS | 50.0% | |
TTGTTTGGCGCGATTTGTGC+CGG | - | chr1.1:4574214-4574233 | None:intergenic | 50.0% | |
! | AAGGTTGCGTTGGTGGAAGA+AGG | + | chr1.1:4574030-4574049 | MS.gene24471:CDS | 50.0% |
! | TTGGTTGCTTTGACGCAGTC+CGG | + | chr1.1:4574192-4574211 | MS.gene24471:CDS | 50.0% |
!! | ATCGGAATTTTCGGAAGCGC+AGG | - | chr1.1:4573328-4573347 | None:intergenic | 50.0% |
!! | CATGGTGCCGTTTATTGCGT+TGG | + | chr1.1:4574935-4574954 | MS.gene24471:intron | 50.0% |
!! | GGTGTTGGTTGAGATTGTGG+AGG | + | chr1.1:4574062-4574081 | MS.gene24471:CDS | 50.0% |
!! | TGAAGGTGCCATTCCTCCTT+TGG | + | chr1.1:4574173-4574192 | MS.gene24471:CDS | 50.0% |
AAGGCGGCGATTGGAAGATC+CGG | + | chr1.1:4573784-4573803 | MS.gene24471:CDS | 55.0% | |
ACGTCAGCTACCGCAAGTTG+AGG | - | chr1.1:4574913-4574932 | None:intergenic | 55.0% | |
AGATGAGAGCGGTGAAAGCG+GGG | + | chr1.1:4573908-4573927 | MS.gene24471:CDS | 55.0% | |
AGGGCAAAAATTGCGGTGGG+TGG | - | chr1.1:4575014-4575033 | None:intergenic | 55.0% | |
CTTCACTGAGTCGAGTCTCC+AGG | + | chr1.1:4574770-4574789 | MS.gene24471:intron | 55.0% | |
GAGTCGAGTCTCCAGGTCAT+TGG | + | chr1.1:4574777-4574796 | MS.gene24471:intron | 55.0% | |
GATTTGTGAGGATAGCGCGG+CGG | + | chr1.1:4574131-4574150 | MS.gene24471:CDS | 55.0% | |
GCAAAAATTGCGGTGGGTGG+AGG | - | chr1.1:4575011-4575030 | None:intergenic | 55.0% | |
GGTTGGATCGCAGAGACAGA+AGG | + | chr1.1:4574083-4574102 | MS.gene24471:CDS | 55.0% | |
GTTGCAGTCACTGAAAGCGG+AGG | - | chr1.1:4573247-4573266 | None:intergenic | 55.0% | |
TCGGGAGGTAGAAGAAGTGG+TGG | - | chr1.1:4573292-4573311 | None:intergenic | 55.0% | |
TCGTCGGGAGGTAGAAGAAG+TGG | - | chr1.1:4573295-4573314 | None:intergenic | 55.0% | |
TGGAGGAATACGCGGGAAGA+AGG | + | chr1.1:4573840-4573859 | MS.gene24471:CDS | 55.0% | |
TTGCGGTAGCTGACGTTGCA+TGG | + | chr1.1:4574917-4574936 | MS.gene24471:intron | 55.0% | |
! | AGAAGTGGTGGCGAATTCGC+CGG | - | chr1.1:4573280-4573299 | None:intergenic | 55.0% |
! | CGTCAGCTACCGCAAGTTGA+GGG | - | chr1.1:4574912-4574931 | None:intergenic | 55.0% |
! | GTTGCGTTGGTGGAAGAAGG+TGG | + | chr1.1:4574033-4574052 | MS.gene24471:CDS | 55.0% |
!! | AATTTTCGGAAGCGCAGGCG+AGG | - | chr1.1:4573323-4573342 | None:intergenic | 55.0% |
!! | GAGTGTGTTGGTATCGGTGC+CGG | + | chr1.1:4574002-4574021 | MS.gene24471:CDS | 55.0% |
!! | GCCGGTGTTGGTTGAGATTG+TGG | + | chr1.1:4574059-4574078 | MS.gene24471:CDS | 55.0% |
!! | GGTGCCGTTTATTGCGTTGG+TGG | + | chr1.1:4574938-4574957 | MS.gene24471:intron | 55.0% |
ACCAACGCAACCTTCGCCTC+CGG | - | chr1.1:4574024-4574043 | None:intergenic | 60.0% | |
CGATCCATGGTGGCTCGTGA+AGG | + | chr1.1:4574156-4574175 | MS.gene24471:CDS | 60.0% | |
CGGGAAGAAGGACGCGTCTA+CGG | + | chr1.1:4573852-4573871 | MS.gene24471:CDS | 60.0% | |
GGTGGAAGAAGGTGGTGTGC+CGG | + | chr1.1:4574041-4574060 | MS.gene24471:CDS | 60.0% | |
! | AGAAGGTGGTGTGCCGGTGT+TGG | + | chr1.1:4574047-4574066 | MS.gene24471:CDS | 60.0% |
!! | TGTGTTGGTATCGGTGCCGG+AGG | + | chr1.1:4574005-4574024 | MS.gene24471:CDS | 60.0% |
CGCAGGCGAGGAAGAGTCGT+CGG | - | chr1.1:4573311-4573330 | None:intergenic | 65.0% | |
GCAGGCGAGGAAGAGTCGTC+GGG | - | chr1.1:4573310-4573329 | None:intergenic | 65.0% | |
GGAGGCGAAGGTTGCGTTGG+TGG | + | chr1.1:4574023-4574042 | MS.gene24471:CDS | 65.0% | |
GGCACCTTCACGAGCCACCA+TGG | - | chr1.1:4574163-4574182 | None:intergenic | 65.0% | |
TAGCGCGGCGGTTCGATCCA+TGG | + | chr1.1:4574143-4574162 | MS.gene24471:CDS | 65.0% | |
CGCGGCGGTTCGATCCATGG+TGG | + | chr1.1:4574146-4574165 | MS.gene24471:CDS | 70.0% | |
GCCGGAGGCGAAGGTTGCGT+TGG | + | chr1.1:4574020-4574039 | MS.gene24471:CDS | 70.0% | |
GGCGAGGAAGAGTCGTCGGG+AGG | - | chr1.1:4573307-4573326 | None:intergenic | 70.0% | |
!! | GGTATCGGTGCCGGAGGCGA+AGG | + | chr1.1:4574011-4574030 | MS.gene24471:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 4573174 | 4575529 | 4573174 | ID=MS.gene24471 |
chr1.1 | mRNA | 4573174 | 4575529 | 4573174 | ID=MS.gene24471.t1;Parent=MS.gene24471 |
chr1.1 | exon | 4573174 | 4573686 | 4573174 | ID=MS.gene24471.t1.exon1;Parent=MS.gene24471.t1 |
chr1.1 | CDS | 4573174 | 4573686 | 4573174 | ID=cds.MS.gene24471.t1;Parent=MS.gene24471.t1 |
chr1.1 | exon | 4573772 | 4574236 | 4573772 | ID=MS.gene24471.t1.exon2;Parent=MS.gene24471.t1 |
chr1.1 | CDS | 4573772 | 4574236 | 4573772 | ID=cds.MS.gene24471.t1;Parent=MS.gene24471.t1 |
chr1.1 | exon | 4575473 | 4575529 | 4575473 | ID=MS.gene24471.t1.exon3;Parent=MS.gene24471.t1 |
chr1.1 | CDS | 4575473 | 4575529 | 4575473 | ID=cds.MS.gene24471.t1;Parent=MS.gene24471.t1 |
Gene Sequence |
Protein sequence |