AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24526

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24526.t1 MTR_1g017090 94.170 223 11 2 1 222 50 271 7.23e-150 418
MS.gene24526.t1 MTR_4g097600 72.308 130 32 2 69 196 112 239 4.61e-61 192
MS.gene24526.t1 MTR_5g014890 63.871 155 44 4 75 223 115 263 3.71e-60 190
MS.gene24526.t1 MTR_1g054285 70.079 127 36 1 70 196 142 266 1.20e-58 187
MS.gene24526.t1 MTR_7g093430 69.919 123 35 1 75 197 153 273 3.44e-57 183
MS.gene24526.t1 MTR_5g013010 51.892 185 75 5 40 222 96 268 2.35e-54 176
MS.gene24526.t1 MTR_4g100550 52.778 180 68 5 40 218 85 248 1.49e-53 173
MS.gene24526.t1 MTR_3g103590 51.064 235 95 8 2 222 61 289 1.52e-53 174
MS.gene24526.t1 MTR_2g061030 71.552 116 31 1 81 196 199 312 3.07e-53 174
MS.gene24526.t1 MTR_8g006705 69.565 115 32 2 81 194 145 257 1.42e-50 166
MS.gene24526.t1 MTR_4g084750 47.674 172 67 5 36 194 20 181 1.81e-42 142
MS.gene24526.t1 MTR_2g038625 49.032 155 75 3 46 200 49 199 1.74e-37 130
MS.gene24526.t1 MTR_2g038580 49.032 155 75 3 46 200 49 199 1.74e-37 130
MS.gene24526.t1 MTR_4g126900 59.292 113 44 2 84 194 90 202 5.39e-35 124
MS.gene24526.t1 MTR_5g013010 57.609 92 35 2 43 133 99 187 2.72e-23 93.6
MS.gene24526.t1 MTR_6g007647 51.648 91 44 0 79 169 30 120 1.27e-21 90.1
MS.gene24526.t1 MTR_6g007647 51.648 91 44 0 79 169 64 154 1.70e-21 90.5
MS.gene24526.t1 MTR_7g010020 42.991 107 54 1 81 180 79 185 1.08e-18 82.4
MS.gene24526.t1 MTR_7g103340 41.346 104 61 0 66 169 47 150 1.16e-18 81.6
MS.gene24526.t1 MTR_1g061660 45.263 95 52 0 76 170 53 147 2.25e-18 80.9
MS.gene24526.t1 MTR_8g089895 44.628 121 56 3 56 169 32 148 5.14e-18 81.3
MS.gene24526.t1 MTR_3g080100 46.078 102 46 2 77 169 13 114 6.15e-18 79.3
MS.gene24526.t1 MTR_3g080100 46.078 102 46 2 77 169 52 153 9.38e-18 79.7
MS.gene24526.t1 MTR_5g039000 43.434 99 54 1 73 169 66 164 1.01e-17 80.1
MS.gene24526.t1 MTR_8g468210 40.678 118 59 2 54 169 56 164 3.14e-17 78.6
MS.gene24526.t1 MTR_3g086790 47.368 95 43 1 82 169 60 154 3.72e-17 79.0
MS.gene24526.t1 MTR_8g469430 46.875 96 44 1 80 168 87 182 8.25e-17 77.8
MS.gene24526.t1 MTR_4g107650 48.864 88 45 0 82 169 95 182 1.70e-16 77.4
MS.gene24526.t1 MTR_6g011610 47.872 94 42 1 82 168 96 189 2.43e-16 76.3
MS.gene24526.t1 MTR_6g011610 47.872 94 42 1 82 168 77 170 3.91e-16 75.5
MS.gene24526.t1 MTR_5g038280 45.263 95 45 1 82 169 87 181 1.64e-15 74.3
MS.gene24526.t1 MTR_5g019650 45.882 85 46 0 82 166 53 137 1.56e-11 62.0
MS.gene24526.t1 MTR_3g092150 41.935 93 47 1 85 170 41 133 1.58e-11 62.4
MS.gene24526.t1 MTR_5g029320 34.375 128 72 2 41 167 61 177 2.16e-11 63.2
MS.gene24526.t1 MTR_5g019680 49.296 71 36 0 82 152 53 123 5.40e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24526.t1 AT5G06710 56.425 179 63 5 40 209 140 312 9.45e-60 191
MS.gene24526.t1 AT4G37790 73.984 123 29 2 75 196 118 238 2.17e-59 188
MS.gene24526.t1 AT2G22800 72.358 123 31 2 75 196 105 225 1.92e-56 181
MS.gene24526.t1 AT4G16780 59.589 146 48 4 75 218 121 257 1.33e-52 171
MS.gene24526.t1 AT3G60390 66.667 123 40 1 72 194 152 273 6.57e-52 170
MS.gene24526.t1 AT5G47370 46.544 217 91 7 16 221 54 256 3.14e-50 165
MS.gene24526.t1 AT2G44910 68.376 117 34 2 81 196 162 276 8.50e-50 165
MS.gene24526.t1 AT4G17460 64.407 118 41 1 81 198 134 250 8.49e-47 156
MS.gene24526.t1 AT2G01430 46.584 161 73 5 45 196 93 249 1.33e-39 137
MS.gene24526.t1 AT1G70920 46.667 150 67 2 57 204 14 152 1.41e-35 124
MS.gene24526.t1 AT1G70920 46.667 150 67 2 57 204 44 182 1.42e-35 125
MS.gene24526.t1 AT5G06710 54.369 103 37 3 40 133 140 241 1.83e-24 98.2
MS.gene24526.t1 AT2G01430 46.465 99 44 3 44 133 92 190 1.16e-20 86.7
MS.gene24526.t1 AT3G01470 46.316 95 44 1 80 167 66 160 3.33e-18 81.3
MS.gene24526.t1 AT1G69780 44.444 99 53 1 73 169 74 172 4.78e-17 78.6
MS.gene24526.t1 AT1G26960 46.316 95 49 1 77 169 64 158 7.69e-17 77.4
MS.gene24526.t1 AT5G15150 38.462 143 75 3 73 204 102 242 2.17e-16 77.0
MS.gene24526.t1 AT2G22430 37.956 137 72 3 46 172 23 156 2.30e-16 76.6
MS.gene24526.t1 AT4G40060 42.857 105 56 1 72 172 49 153 6.32e-16 75.5
MS.gene24526.t1 AT5G65310 43.434 99 49 1 82 173 72 170 1.43e-15 74.7
MS.gene24526.t1 AT5G65310 43.434 99 49 1 82 173 54 152 1.52e-15 74.3
MS.gene24526.t1 AT1G27045 50.000 88 44 0 82 169 68 155 1.79e-15 73.2
MS.gene24526.t1 AT1G27045 50.000 88 44 0 82 169 68 155 2.69e-15 73.2
MS.gene24526.t1 AT1G27045 50.000 88 44 0 82 169 25 112 3.08e-15 71.6
MS.gene24526.t1 AT1G27045 50.000 88 44 0 82 169 25 112 3.08e-15 71.6
MS.gene24526.t1 AT1G27045 57.576 66 28 0 82 147 17 82 3.30e-15 71.2
MS.gene24526.t1 AT3G01220 41.667 108 52 2 73 169 74 181 1.26e-14 71.6
MS.gene24526.t1 AT2G36610 41.176 102 52 1 77 170 66 167 1.69e-14 69.7
MS.gene24526.t1 AT5G03790 40.449 89 53 0 82 170 77 165 7.82e-14 68.6
MS.gene24526.t1 AT5G03790 36.207 116 68 2 82 191 77 192 7.08e-13 65.5
MS.gene24526.t1 AT2G46680 42.353 85 49 0 85 169 35 119 7.33e-13 66.2
MS.gene24526.t1 AT2G46680 42.353 85 49 0 85 169 35 119 8.60e-13 66.2
MS.gene24526.t1 AT2G18550 37.864 103 63 1 66 168 46 147 1.26e-11 62.4
MS.gene24526.t1 AT4G36740 39.080 87 53 0 82 168 56 142 5.07e-11 60.5
MS.gene24526.t1 AT4G36740 39.080 87 53 0 82 168 55 141 5.42e-11 60.5

Find 45 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGGAATCTTCATATAAA+AGG 0.190194 1.2:-5657646 None:intergenic
TCTTCACTCTCTTCCTTTGA+TGG 0.194879 1.2:-5655853 None:intergenic
ACATTTCCTATCCTTGTAAT+TGG 0.209590 1.2:-5656036 None:intergenic
CCCTCAACAACATTGCTTAC+TGG 0.286571 1.2:+5657732 MS.gene24526:CDS
GTGAGCCTAAGTTTCTTCCT+TGG 0.317530 1.2:-5656075 None:intergenic
AAAACAACAATCAGAAGTTT+TGG 0.327778 1.2:+5656098 MS.gene24526:CDS
TGAGCCTAAGTTTCTTCCTT+GGG 0.367322 1.2:-5656074 None:intergenic
GGAGAGTGGTGAGGAATTTG+AGG 0.383101 1.2:+5655996 MS.gene24526:CDS
ACCACTCTCCTTCCTGATGC+TGG 0.385112 1.2:-5655983 None:intergenic
GCTTATCCAATGCTTACATT+AGG 0.396378 1.2:+5655829 None:intergenic
TAGAGGTGTGGTTTCAAAAT+CGG 0.417824 1.2:+5656923 MS.gene24526:CDS
TTTCAAATTCCACCAGCATC+AGG 0.453960 1.2:+5655971 MS.gene24526:CDS
AGCAAATAAGCTGAATCTGC+AGG 0.462898 1.2:+5656891 MS.gene24526:CDS
CCTTCGTGCGAGACAATTTG+TGG 0.481936 1.2:+5657687 MS.gene24526:CDS
AAGCAATGTTGTTGAGGGTA+AGG 0.487754 1.2:-5657727 None:intergenic
GCTGGAATCTTCATATAAAA+GGG 0.492378 1.2:-5657645 None:intergenic
ATAGGAAATGTTGATAAAGA+TGG 0.494478 1.2:+5656048 MS.gene24526:CDS
GATGGTCCTAATGTAAGCAT+TGG 0.505729 1.2:-5655835 None:intergenic
GGTTTCAAAATCGGAGAGCC+AGG 0.511878 1.2:+5656932 MS.gene24526:CDS
GGAGAACAAGAAGTTGCAAA+AGG 0.515455 1.2:+5657581 MS.gene24526:CDS
CCAGTAAGCAATGTTGTTGA+GGG 0.519543 1.2:-5657732 None:intergenic
CACAAATTGTCTCGCACGAA+GGG 0.524067 1.2:-5657686 None:intergenic
AGAGCATTCTACTCTTAATC+CGG 0.524461 1.2:+5656134 MS.gene24526:CDS
AAGGTGCCAATTACAAGGAT+AGG 0.527337 1.2:+5656030 MS.gene24526:CDS
GCCAGTAAGCAATGTTGTTG+AGG 0.532003 1.2:-5657733 None:intergenic
CAGAACAAAGCTGAAACAAA+CGG 0.533275 1.2:+5657512 MS.gene24526:intron
ATTTGAGGTAGAGATAGAAA+AGG 0.543575 1.2:+5656011 MS.gene24526:CDS
ACTCTCCTTCCTGATGCTGG+TGG 0.545711 1.2:-5655980 None:intergenic
TAGAAAAGGTGCCAATTACA+AGG 0.547476 1.2:+5656025 MS.gene24526:CDS
GTAGCCCAAGGAAGAAACTT+AGG 0.555898 1.2:+5656070 MS.gene24526:CDS
CTTGCAGAAGTAAATTGAGT+AGG 0.581739 1.2:-5655934 None:intergenic
GCTTACATTAGGACCATCAA+AGG 0.583436 1.2:+5655840 MS.gene24526:CDS
TGTCTCGCACGAAGGGCAGA+TGG 0.584824 1.2:-5657679 None:intergenic
ATTTGTGGTGGCAACAACAA+TGG 0.596806 1.2:+5657702 MS.gene24526:CDS
CAGATGGTAAGTGTTGCTGC+TGG 0.599263 1.2:-5657663 None:intergenic
ACAACATTCAACATCAAAGA+CGG 0.613762 1.2:+5655891 MS.gene24526:CDS
AAATTCCACCAGCATCAGGA+AGG 0.618266 1.2:+5655975 MS.gene24526:CDS
TCTGCAGGCTAGACAAGTAG+AGG 0.619659 1.2:+5656906 MS.gene24526:CDS
TTGATAAAGATGGTAGCCCA+AGG 0.634722 1.2:+5656058 MS.gene24526:CDS
TCGTGCGAGACAATTTGTGG+TGG 0.644683 1.2:+5657690 MS.gene24526:CDS
ACCAGCATCAGGAAGGAGAG+TGG 0.645786 1.2:+5655982 MS.gene24526:CDS
GTGTTGCGAATCTCTAACAG+AGG 0.648660 1.2:+5657560 MS.gene24526:CDS
CCACAAATTGTCTCGCACGA+AGG 0.651452 1.2:-5657687 None:intergenic
CATCAGGAAGGAGAGTGGTG+AGG 0.670590 1.2:+5655987 MS.gene24526:CDS
AGGCTAGACAAGTAGAGGTG+TGG 0.674713 1.2:+5656911 MS.gene24526:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAAATTAAATTCTA+AGG - chr1.2:5656750-5656769 None:intergenic 10.0%
!! AAACAAAGAAGTAAAATATA+TGG - chr1.2:5657161-5657180 None:intergenic 15.0%
!! AAGTTTATAAAAATTGTTTC+AGG - chr1.2:5656655-5656674 None:intergenic 15.0%
!!! ACAATTTTTATAAACTTGTA+CGG + chr1.2:5656658-5656677 MS.gene24526:intron 15.0%
!!! ATTTTATTAGAATTAGATCT+TGG + chr1.2:5656445-5656464 MS.gene24526:intron 15.0%
!! AAATTTGTAATACATTGGAT+TGG - chr1.2:5656793-5656812 None:intergenic 20.0%
!! AGTTTCAAAATTTATTCTCT+TGG + chr1.2:5656526-5656545 MS.gene24526:intron 20.0%
!! ATATAATTTCACAAAATCTG+AGG - chr1.2:5657457-5657476 None:intergenic 20.0%
!! ATGAGAATATTGATGAATTA+AGG - chr1.2:5656162-5656181 None:intergenic 20.0%
!! CTACAAAATTTGTAATACAT+TGG - chr1.2:5656798-5656817 None:intergenic 20.0%
!! TTTCAGGAAATTATTTATTC+TGG - chr1.2:5656639-5656658 None:intergenic 20.0%
!!! ACTTCTTTGTTTTTTTTTAC+TGG + chr1.2:5657169-5657188 MS.gene24526:intron 20.0%
!!! CATTTTTTTAGAAATGTTTC+TGG + chr1.2:5656707-5656726 MS.gene24526:intron 20.0%
!!! GAAACATTTCTAAAAAAATG+AGG - chr1.2:5656707-5656726 None:intergenic 20.0%
!!! TCATTTCCATAAAAACTTTT+TGG + chr1.2:5657767-5657786 MS.gene24526:CDS 20.0%
! ACAAAAAATGTTAACAGCTA+GGG + chr1.2:5657363-5657382 MS.gene24526:intron 25.0%
! AGACGTTTAAAAAGTTTAGA+AGG - chr1.2:5657404-5657423 None:intergenic 25.0%
! ATATATATTGTTAGAGCGAA+AGG + chr1.2:5657272-5657291 MS.gene24526:intron 25.0%
! ATATTGATGAATTAAGGTAC+CGG - chr1.2:5656156-5656175 None:intergenic 25.0%
! CATCAATATTCTCATATCTT+TGG + chr1.2:5656167-5656186 MS.gene24526:intron 25.0%
!! AAAACAACAATCAGAAGTTT+TGG + chr1.2:5656098-5656117 MS.gene24526:CDS 25.0%
!! AATATCAAAACAAAAGTACG+TGG - chr1.2:5656222-5656241 None:intergenic 25.0%
!! ATAGGAAATGTTGATAAAGA+TGG + chr1.2:5656048-5656067 MS.gene24526:CDS 25.0%
AAAAGTTTAGAAGGAGGTTT+AGG - chr1.2:5657395-5657414 None:intergenic 30.0%
AAAGTTTAGAAGGAGGTTTA+GGG - chr1.2:5657394-5657413 None:intergenic 30.0%
ACAACATTCAACATCAAAGA+CGG + chr1.2:5655891-5655910 MS.gene24526:CDS 30.0%
ACATTTCCTATCCTTGTAAT+TGG - chr1.2:5656039-5656058 None:intergenic 30.0%
ATCATCATGACAATTGCTAA+TGG - chr1.2:5657039-5657058 None:intergenic 30.0%
CACAAAAAATGTTAACAGCT+AGG + chr1.2:5657362-5657381 MS.gene24526:intron 30.0%
CGTTTAAAAAGTTTAGAAGG+AGG - chr1.2:5657401-5657420 None:intergenic 30.0%
GCTGGAATCTTCATATAAAA+GGG - chr1.2:5657648-5657667 None:intergenic 30.0%
GGTAAAATCTTGATATTCCT+AGG + chr1.2:5656588-5656607 MS.gene24526:intron 30.0%
TATGAAGCAAACTCAATCTA+AGG - chr1.2:5656507-5656526 None:intergenic 30.0%
TGCTGGAATCTTCATATAAA+AGG - chr1.2:5657649-5657668 None:intergenic 30.0%
TTAGAATTAGATCTTGGTCT+TGG + chr1.2:5656451-5656470 MS.gene24526:intron 30.0%
TTCACAAAATCTGAGGAATA+AGG - chr1.2:5657450-5657469 None:intergenic 30.0%
! AAAACAAAAGTACGTGGTAT+AGG - chr1.2:5656216-5656235 None:intergenic 30.0%
! ATTTGAGGTAGAGATAGAAA+AGG + chr1.2:5656011-5656030 MS.gene24526:CDS 30.0%
! ATTTTACCAAACACTTTGGT+GGG - chr1.2:5656576-5656595 None:intergenic 30.0%
! CAAGATTTTACCAAACACTT+TGG - chr1.2:5656580-5656599 None:intergenic 30.0%
! TCTCTTGGATTACATTTTCT+AGG + chr1.2:5656541-5656560 MS.gene24526:intron 30.0%
AAGGTAAAGTATGCGATCAA+AGG - chr1.2:5657431-5657450 None:intergenic 35.0%
AGGTAAAGTATGCGATCAAA+GGG - chr1.2:5657430-5657449 None:intergenic 35.0%
CAGAACAAAGCTGAAACAAA+CGG + chr1.2:5657512-5657531 MS.gene24526:intron 35.0%
CGATACTATCTTAAAACGCA+CGG - chr1.2:5656970-5656989 None:intergenic 35.0%
CTTGATATTCCTAGGAAAGT+TGG + chr1.2:5656596-5656615 MS.gene24526:intron 35.0%
CTTGCAGAAGTAAATTGAGT+AGG - chr1.2:5655937-5655956 None:intergenic 35.0%
! AGAGCATTCTACTCTTAATC+CGG + chr1.2:5656134-5656153 MS.gene24526:CDS 35.0%
! ATATTCCTAGGAAAGTTGGT+AGG + chr1.2:5656600-5656619 MS.gene24526:intron 35.0%
! ATTATTCCCACCAAAGTGTT+TGG + chr1.2:5656567-5656586 MS.gene24526:intron 35.0%
! GATTTTACCAAACACTTTGG+TGG - chr1.2:5656577-5656596 None:intergenic 35.0%
! TAGAGGTGTGGTTTCAAAAT+CGG + chr1.2:5656923-5656942 MS.gene24526:CDS 35.0%
! TCTAAGGTGTGTTTGTTTCA+AGG - chr1.2:5656734-5656753 None:intergenic 35.0%
!! ACAACAATCAGAAGTTTTGG+AGG + chr1.2:5656101-5656120 MS.gene24526:CDS 35.0%
!! TAGAAAAGGTGCCAATTACA+AGG + chr1.2:5656025-5656044 MS.gene24526:CDS 35.0%
AAGCAATGTTGTTGAGGGTA+AGG - chr1.2:5657730-5657749 None:intergenic 40.0%
AGCAAATAAGCTGAATCTGC+AGG + chr1.2:5656891-5656910 MS.gene24526:CDS 40.0%
AGGAGAAAACTTAGATGGCA+CGG + chr1.2:5657292-5657311 MS.gene24526:intron 40.0%
ATTTGTGGTGGCAACAACAA+TGG + chr1.2:5657702-5657721 MS.gene24526:CDS 40.0%
CCAGTAAGCAATGTTGTTGA+GGG - chr1.2:5657735-5657754 None:intergenic 40.0%
GCGAAAGGAGAAAACTTAGA+TGG + chr1.2:5657287-5657306 MS.gene24526:intron 40.0%
GCTTACATTAGGACCATCAA+AGG + chr1.2:5655840-5655859 MS.gene24526:CDS 40.0%
GGAGAACAAGAAGTTGCAAA+AGG + chr1.2:5657581-5657600 MS.gene24526:CDS 40.0%
TATTCTCTACGTGCGCAATA+TGG - chr1.2:5657329-5657348 None:intergenic 40.0%
TCTTCACTCTCTTCCTTTGA+TGG - chr1.2:5655856-5655875 None:intergenic 40.0%
TGAGCCTAAGTTTCTTCCTT+GGG - chr1.2:5656077-5656096 None:intergenic 40.0%
TTGATAAAGATGGTAGCCCA+AGG + chr1.2:5656058-5656077 MS.gene24526:CDS 40.0%
TTTCAAATTCCACCAGCATC+AGG + chr1.2:5655971-5655990 MS.gene24526:CDS 40.0%
! AAGGTGCCAATTACAAGGAT+AGG + chr1.2:5656030-5656049 MS.gene24526:CDS 40.0%
! CACGCACAGTATTTTTCTCA+TGG + chr1.2:5656347-5656366 MS.gene24526:intron 40.0%
! TGGTCTTGGTTGATTGTGTT+TGG + chr1.2:5656465-5656484 MS.gene24526:intron 40.0%
AAATTCCACCAGCATCAGGA+AGG + chr1.2:5655975-5655994 MS.gene24526:CDS 45.0%
ACACACCTACCAACTTTCCT+AGG - chr1.2:5656608-5656627 None:intergenic 45.0%
CACAAATTGTCTCGCACGAA+GGG - chr1.2:5657689-5657708 None:intergenic 45.0%
CCCTCAACAACATTGCTTAC+TGG + chr1.2:5657732-5657751 MS.gene24526:CDS 45.0%
GCCAGTAAGCAATGTTGTTG+AGG - chr1.2:5657736-5657755 None:intergenic 45.0%
GTAGCCCAAGGAAGAAACTT+AGG + chr1.2:5656070-5656089 MS.gene24526:CDS 45.0%
GTGAGCCTAAGTTTCTTCCT+TGG - chr1.2:5656078-5656097 None:intergenic 45.0%
GTGTTGCGAATCTCTAACAG+AGG + chr1.2:5657560-5657579 MS.gene24526:CDS 45.0%
AGGCTAGACAAGTAGAGGTG+TGG + chr1.2:5656911-5656930 MS.gene24526:CDS 50.0%
CCACAAATTGTCTCGCACGA+AGG - chr1.2:5657690-5657709 None:intergenic 50.0%
CCTTCGTGCGAGACAATTTG+TGG + chr1.2:5657687-5657706 MS.gene24526:CDS 50.0%
GCACGGAGCAGTAAATTACC+TGG - chr1.2:5656953-5656972 None:intergenic 50.0%
GGAGAGTGGTGAGGAATTTG+AGG + chr1.2:5655996-5656015 MS.gene24526:CDS 50.0%
GGTTTCAAAATCGGAGAGCC+AGG + chr1.2:5656932-5656951 MS.gene24526:CDS 50.0%
TCGTGCGAGACAATTTGTGG+TGG + chr1.2:5657690-5657709 MS.gene24526:CDS 50.0%
TCTGCAGGCTAGACAAGTAG+AGG + chr1.2:5656906-5656925 MS.gene24526:CDS 50.0%
! CAGATGGTAAGTGTTGCTGC+TGG - chr1.2:5657666-5657685 None:intergenic 50.0%
ACCACTCTCCTTCCTGATGC+TGG - chr1.2:5655986-5656005 None:intergenic 55.0%
ACCAGCATCAGGAAGGAGAG+TGG + chr1.2:5655982-5656001 MS.gene24526:CDS 55.0%
ACTCTCCTTCCTGATGCTGG+TGG - chr1.2:5655983-5656002 None:intergenic 55.0%
CATCAGGAAGGAGAGTGGTG+AGG + chr1.2:5655987-5656006 MS.gene24526:CDS 55.0%
TGTCTCGCACGAAGGGCAGA+TGG - chr1.2:5657682-5657701 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 5655838 5657794 5655838 ID=MS.gene24526
chr1.2 mRNA 5655838 5657794 5655838 ID=MS.gene24526.t1;Parent=MS.gene24526
chr1.2 exon 5655838 5656155 5655838 ID=MS.gene24526.t1.exon1;Parent=MS.gene24526.t1
chr1.2 CDS 5655838 5656155 5655838 ID=cds.MS.gene24526.t1;Parent=MS.gene24526.t1
chr1.2 exon 5656874 5656953 5656874 ID=MS.gene24526.t1.exon2;Parent=MS.gene24526.t1
chr1.2 CDS 5656874 5656953 5656874 ID=cds.MS.gene24526.t1;Parent=MS.gene24526.t1
chr1.2 exon 5657515 5657794 5657515 ID=MS.gene24526.t1.exon3;Parent=MS.gene24526.t1
chr1.2 CDS 5657515 5657794 5657515 ID=cds.MS.gene24526.t1;Parent=MS.gene24526.t1
Gene Sequence

>MS.gene24526

ATGCTTACATTAGGACCATCAAAGGAAGAGAGTGAAGAAAATACTAAAATTCAACAACATTCAACATCAAAGACGGAATCTTGTGATCAAAATTTACCTACTCAATTTACTTCTGCAAGCATAGAGTCTTCATTTTCAAATTCCACCAGCATCAGGAAGGAGAGTGGTGAGGAATTTGAGGTAGAGATAGAAAAGGTGCCAATTACAAGGATAGGAAATGTTGATAAAGATGGTAGCCCAAGGAAGAAACTTAGGCTCACAAAACAACAATCAGAAGTTTTGGAGGAAAACTTCAAAGAGCATTCTACTCTTAATCCGGTACCTTAATTCATCAATATTCTCATATCTTTGGTTGCTTTAAATAATTCTTTTGCTCCTATACCACGTACTTTTGTTTTGATATTTTTATTTTAGTACTAATAACTATTTTATATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGACACACACGCACAGTATTTTTCTCATGGCACACTAATTGTGTGTAGCATATAGTAAATGAAGAATATGATATCATTTTAAACGAGTTTTCTCGATGATATTTGATTTTATTAGAATTAGATCTTGGTCTTGGTTGATTGTGTTTGGTCTAAAACTGAGAAGACCTTAGATTGAGTTTGCTTCATAGTTTCAAAATTTATTCTCTTGGATTACATTTTCTAGGAATATTATTCCCACCAAAGTGTTTGGTAAAATCTTGATATTCCTAGGAAAGTTGGTAGGTGTGTTTTATTTTCCAGAATAAATAATTTCCTGAAACAATTTTTATAAACTTGTACGGAATATAATAATATTAAATTCTAACCTCATTTTTTTAGAAATGTTTCTGGACCTTGAAACAAACACACCTTAGAATTTAATTTTTTTTCTAATTTGTGCAATTGCTACATCCAATCCAATGTATTACAAATTTTGTAGCATGAGTATATGTTGCTTTGTTATTATTAATAAAAAGAAAATCTCATTTTCTTCAGAAGCAAAAGCAAGCATTAGCAAATAAGCTGAATCTGCAGGCTAGACAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGTAATTTACTGCTCCGTGCGTTTTAAGATAGTATCGTTTAAAGTTCTTTTATATAGATTAAAAAATTTACAAAACTGTTTATCCATTAGCAATTGTCATGATGATGCATAACAAAATATAATGTCTTGAGACTTATGTACACACAAAAAGTTGTGATAAAATTGAAATAATGAAATTATACTATTGATGTTACATTAAAAAGTACCATATATTTTACTTCTTTGTTTTTTTTTACTGGATCGCACATACTTTACTTTATTGCTTCTTTAATAGATAAATGTTACTTTTTTTAATAATAAATAAATGTTACTTGTTAGTATATATATTGTTAGAGCGAAAGGAGAAAACTTAGATGGCACGGATCTCAACTCTCCATATTGCGCACGTAGAGAATACTCGATTTACACACACAAAAAATGTTAACAGCTAGGGTCAAACCCTAAACCTCCTTCTAAACTTTTTAAACGTCTCGACCCTTTGATCGCATACTTTACCTTATTCCTCAGATTTTGTGAAATTATATTTCTTGCATATACTAATGATTACTATATACATGTTCAGAACAAAGCTGAAACAAACGGAATCTGATTGTGAAATACTGAAGAAGTGTTGCGAATCTCTAACAGAGGAGAACAAGAAGTTGCAAAAGGAGCTACAAGAACTAAAGTCAATGCAAACAGTAGCAGCAGCACCCTTTTATATGAAGATTCCAGCAGCAACACTTACCATCTGCCCTTCGTGCGAGACAATTTGTGGTGGCAACAACAATGGCTCCTTACCCTCAACAACATTGCTTACTGGCTCAAAGAATCATCATTTCCATAAAAACTTTTTGGTTTGA
Protein sequence

>MS.gene24526.t1

MLTLGPSKEESEENTKIQQHSTSKTESCDQNLPTQFTSASIESSFSNSTSIRKESGEEFEVEIEKVPITRIGNVDKDGSPRKKLRLTKQQSEVLEENFKEHSTLNPKQKQALANKLNLQARQVEVWFQNRRARTKLKQTESDCEILKKCCESLTEENKKLQKELQELKSMQTVAAAPFYMKIPAATLTICPSCETICGGNNNGSLPSTTLLTGSKNHHFHKNFLV