AlfalfaGEDB | MS.gene24526

M. sativa cultivar XinJiangDaYe / MS.gene24526

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24526.t1	XP_013465933.1	94.9	198	9	1	1	198	50	246	3.40E-93	351.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24526.t1	P46604	55.9	202	73	5	11	203	51	245	2.1e-43	177.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24526.t1	A0A072VD79	94.9	198	9	1	1	198	50	246	2.4e-93	351.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24526.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051649	MS.gene24526	0.820666	6.08E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24526.t1	MTR_1g017090	94.170	223	11	2	1	222	50	271	7.23e-150	418
MS.gene24526.t1	MTR_4g097600	72.308	130	32	2	69	196	112	239	4.61e-61	192
MS.gene24526.t1	MTR_5g014890	63.871	155	44	4	75	223	115	263	3.71e-60	190
MS.gene24526.t1	MTR_1g054285	70.079	127	36	1	70	196	142	266	1.20e-58	187
MS.gene24526.t1	MTR_7g093430	69.919	123	35	1	75	197	153	273	3.44e-57	183
MS.gene24526.t1	MTR_5g013010	51.892	185	75	5	40	222	96	268	2.35e-54	176
MS.gene24526.t1	MTR_4g100550	52.778	180	68	5	40	218	85	248	1.49e-53	173
MS.gene24526.t1	MTR_3g103590	51.064	235	95	8	2	222	61	289	1.52e-53	174
MS.gene24526.t1	MTR_2g061030	71.552	116	31	1	81	196	199	312	3.07e-53	174
MS.gene24526.t1	MTR_8g006705	69.565	115	32	2	81	194	145	257	1.42e-50	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24526.t1	AT5G06710	56.425	179	63	5	40	209	140	312	9.45e-60	191
MS.gene24526.t1	AT4G37790	73.984	123	29	2	75	196	118	238	2.17e-59	188
MS.gene24526.t1	AT2G22800	72.358	123	31	2	75	196	105	225	1.92e-56	181
MS.gene24526.t1	AT4G16780	59.589	146	48	4	75	218	121	257	1.33e-52	171
MS.gene24526.t1	AT3G60390	66.667	123	40	1	72	194	152	273	6.57e-52	170
MS.gene24526.t1	AT5G47370	46.544	217	91	7	16	221	54	256	3.14e-50	165
MS.gene24526.t1	AT2G44910	68.376	117	34	2	81	196	162	276	8.50e-50	165
MS.gene24526.t1	AT4G17460	64.407	118	41	1	81	198	134	250	8.49e-47	156
MS.gene24526.t1	AT2G01430	46.584	161	73	5	45	196	93	249	1.33e-39	137
MS.gene24526.t1	AT1G70920	46.667	150	67	2	57	204	14	152	1.41e-35	124

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Find 45 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACAATCAGAAGTTT+TGG	0.327778	1.2:+5656098	MS.gene24526:CDS
AAATTCCACCAGCATCAGGA+AGG	0.618266	1.2:+5655975	MS.gene24526:CDS
AAGCAATGTTGTTGAGGGTA+AGG	0.487754	1.2:-5657727	None:intergenic
AAGGTGCCAATTACAAGGAT+AGG	0.527337	1.2:+5656030	MS.gene24526:CDS
ACAACATTCAACATCAAAGA+CGG	0.613762	1.2:+5655891	MS.gene24526:CDS
ACATTTCCTATCCTTGTAAT+TGG	0.209590	1.2:-5656036	None:intergenic
ACCACTCTCCTTCCTGATGC+TGG	0.385112	1.2:-5655983	None:intergenic
ACCAGCATCAGGAAGGAGAG+TGG	0.645786	1.2:+5655982	MS.gene24526:CDS
ACTCTCCTTCCTGATGCTGG+TGG	0.545711	1.2:-5655980	None:intergenic
AGAGCATTCTACTCTTAATC+CGG	0.524461	1.2:+5656134	MS.gene24526:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTTAGAAGGAGGTTT+AGG	-	chr1.2:5657395-5657414	None:intergenic	30.0%
AAAGTTTAGAAGGAGGTTTA+GGG	-	chr1.2:5657394-5657413	None:intergenic	30.0%
ACAACATTCAACATCAAAGA+CGG	+	chr1.2:5655891-5655910	MS.gene24526:CDS	30.0%
ACATTTCCTATCCTTGTAAT+TGG	-	chr1.2:5656039-5656058	None:intergenic	30.0%
ATCATCATGACAATTGCTAA+TGG	-	chr1.2:5657039-5657058	None:intergenic	30.0%
CACAAAAAATGTTAACAGCT+AGG	+	chr1.2:5657362-5657381	MS.gene24526:intron	30.0%
CGTTTAAAAAGTTTAGAAGG+AGG	-	chr1.2:5657401-5657420	None:intergenic	30.0%
GCTGGAATCTTCATATAAAA+GGG	-	chr1.2:5657648-5657667	None:intergenic	30.0%
GGTAAAATCTTGATATTCCT+AGG	+	chr1.2:5656588-5656607	MS.gene24526:intron	30.0%
TATGAAGCAAACTCAATCTA+AGG	-	chr1.2:5656507-5656526	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	5655838	5657794	5655838	ID=MS.gene24526
chr1.2	mRNA	5655838	5657794	5655838	ID=MS.gene24526.t1;Parent=MS.gene24526
chr1.2	exon	5655838	5656155	5655838	ID=MS.gene24526.t1.exon1;Parent=MS.gene24526.t1
chr1.2	CDS	5655838	5656155	5655838	ID=cds.MS.gene24526.t1;Parent=MS.gene24526.t1
chr1.2	exon	5656874	5656953	5656874	ID=MS.gene24526.t1.exon2;Parent=MS.gene24526.t1
chr1.2	CDS	5656874	5656953	5656874	ID=cds.MS.gene24526.t1;Parent=MS.gene24526.t1
chr1.2	exon	5657515	5657794	5657515	ID=MS.gene24526.t1.exon3;Parent=MS.gene24526.t1
chr1.2	CDS	5657515	5657794	5657515	ID=cds.MS.gene24526.t1;Parent=MS.gene24526.t1

Gene Sequence

>MS.gene24526

ATGCTTACATTAGGACCATCAAAGGAAGAGAGTGAAGAAAATACTAAAATTCAACAACATTCAACATCAAAGACGGAATCTTGTGATCAAAATTTACCTACTCAATTTACTTCTGCAAGCATAGAGTCTTCATTTTCAAATTCCACCAGCATCAGGAAGGAGAGTGGTGAGGAATTTGAGGTAGAGATAGAAAAGGTGCCAATTACAAGGATAGGAAATGTTGATAAAGATGGTAGCCCAAGGAAGAAACTTAGGCTCACAAAACAACAATCAGAAGTTTTGGAGGAAAACTTCAAAGAGCATTCTACTCTTAATCCGGTACCTTAATTCATCAATATTCTCATATCTTTGGTTGCTTTAAATAATTCTTTTGCTCCTATACCACGTACTTTTGTTTTGATATTTTTATTTTAGTACTAATAACTATTTTATATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGACACACACGCACAGTATTTTTCTCATGGCACACTAATTGTGTGTAGCATATAGTAAATGAAGAATATGATATCATTTTAAACGAGTTTTCTCGATGATATTTGATTTTATTAGAATTAGATCTTGGTCTTGGTTGATTGTGTTTGGTCTAAAACTGAGAAGACCTTAGATTGAGTTTGCTTCATAGTTTCAAAATTTATTCTCTTGGATTACATTTTCTAGGAATATTATTCCCACCAAAGTGTTTGGTAAAATCTTGATATTCCTAGGAAAGTTGGTAGGTGTGTTTTATTTTCCAGAATAAATAATTTCCTGAAACAATTTTTATAAACTTGTACGGAATATAATAATATTAAATTCTAACCTCATTTTTTTAGAAATGTTTCTGGACCTTGAAACAAACACACCTTAGAATTTAATTTTTTTTCTAATTTGTGCAATTGCTACATCCAATCCAATGTATTACAAATTTTGTAGCATGAGTATATGTTGCTTTGTTATTATTAATAAAAAGAAAATCTCATTTTCTTCAGAAGCAAAAGCAAGCATTAGCAAATAAGCTGAATCTGCAGGCTAGACAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGTAATTTACTGCTCCGTGCGTTTTAAGATAGTATCGTTTAAAGTTCTTTTATATAGATTAAAAAATTTACAAAACTGTTTATCCATTAGCAATTGTCATGATGATGCATAACAAAATATAATGTCTTGAGACTTATGTACACACAAAAAGTTGTGATAAAATTGAAATAATGAAATTATACTATTGATGTTACATTAAAAAGTACCATATATTTTACTTCTTTGTTTTTTTTTACTGGATCGCACATACTTTACTTTATTGCTTCTTTAATAGATAAATGTTACTTTTTTTAATAATAAATAAATGTTACTTGTTAGTATATATATTGTTAGAGCGAAAGGAGAAAACTTAGATGGCACGGATCTCAACTCTCCATATTGCGCACGTAGAGAATACTCGATTTACACACACAAAAAATGTTAACAGCTAGGGTCAAACCCTAAACCTCCTTCTAAACTTTTTAAACGTCTCGACCCTTTGATCGCATACTTTACCTTATTCCTCAGATTTTGTGAAATTATATTTCTTGCATATACTAATGATTACTATATACATGTTCAGAACAAAGCTGAAACAAACGGAATCTGATTGTGAAATACTGAAGAAGTGTTGCGAATCTCTAACAGAGGAGAACAAGAAGTTGCAAAAGGAGCTACAAGAACTAAAGTCAATGCAAACAGTAGCAGCAGCACCCTTTTATATGAAGATTCCAGCAGCAACACTTACCATCTGCCCTTCGTGCGAGACAATTTGTGGTGGCAACAACAATGGCTCCTTACCCTCAACAACATTGCTTACTGGCTCAAAGAATCATCATTTCCATAAAAACTTTTTGGTTTGA

Protein sequence

>MS.gene24526.t1

MLTLGPSKEESEENTKIQQHSTSKTESCDQNLPTQFTSASIESSFSNSTSIRKESGEEFEVEIEKVPITRIGNVDKDGSPRKKLRLTKQQSEVLEENFKEHSTLNPKQKQALANKLNLQARQVEVWFQNRRARTKLKQTESDCEILKKCCESLTEENKKLQKELQELKSMQTVAAAPFYMKIPAATLTICPSCETICGGNNNGSLPSTTLLTGSKNHHFHKNFLV