AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051649

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051649.t1 MTR_1g017090 94.170 223 11 2 1 222 50 271 3.32e-150 419
MS.gene051649.t1 MTR_4g097600 72.308 130 32 2 69 196 112 239 4.28e-61 192
MS.gene051649.t1 MTR_5g014890 62.987 154 47 4 75 223 115 263 1.25e-59 189
MS.gene051649.t1 MTR_1g054285 70.079 127 36 1 70 196 142 266 8.34e-59 187
MS.gene051649.t1 MTR_7g093430 69.919 123 35 1 75 197 153 273 2.69e-57 184
MS.gene051649.t1 MTR_5g013010 51.892 185 75 5 40 222 96 268 2.25e-54 176
MS.gene051649.t1 MTR_3g103590 51.064 235 95 8 2 222 61 289 4.55e-54 176
MS.gene051649.t1 MTR_4g100550 52.778 180 68 5 40 218 85 248 2.13e-53 173
MS.gene051649.t1 MTR_2g061030 71.552 116 31 1 81 196 199 312 2.67e-53 174
MS.gene051649.t1 MTR_8g006705 69.565 115 32 2 81 194 145 257 1.33e-50 167
MS.gene051649.t1 MTR_4g084750 47.674 172 67 5 36 194 20 181 2.37e-42 142
MS.gene051649.t1 MTR_2g038625 49.032 155 75 3 46 200 49 199 1.70e-37 130
MS.gene051649.t1 MTR_2g038580 49.032 155 75 3 46 200 49 199 1.70e-37 130
MS.gene051649.t1 MTR_4g126900 59.292 113 44 2 84 194 90 202 5.69e-35 124
MS.gene051649.t1 MTR_5g013010 57.609 92 35 2 43 133 99 187 2.04e-23 93.6
MS.gene051649.t1 MTR_6g007647 51.648 91 44 0 79 169 30 120 1.35e-21 90.1
MS.gene051649.t1 MTR_6g007647 51.648 91 44 0 79 169 64 154 2.20e-21 90.1
MS.gene051649.t1 MTR_8g089895 45.455 121 55 3 56 169 32 148 1.35e-18 82.8
MS.gene051649.t1 MTR_7g010020 42.991 107 54 1 81 180 79 185 1.45e-18 82.0
MS.gene051649.t1 MTR_3g080100 46.602 103 46 2 76 169 12 114 1.46e-18 81.3
MS.gene051649.t1 MTR_3g080100 33.511 188 78 6 76 224 51 230 1.73e-18 81.6
MS.gene051649.t1 MTR_5g039000 44.444 99 53 1 73 169 66 164 2.36e-18 81.6
MS.gene051649.t1 MTR_7g103340 41.346 104 61 0 66 169 47 150 2.71e-18 80.9
MS.gene051649.t1 MTR_8g468210 41.525 118 58 2 54 169 56 164 6.56e-18 80.5
MS.gene051649.t1 MTR_3g086790 48.421 95 42 1 82 169 60 154 9.04e-18 80.5
MS.gene051649.t1 MTR_1g061660 44.211 95 53 0 76 170 53 147 1.12e-17 79.0
MS.gene051649.t1 MTR_6g011610 48.936 94 41 1 82 168 96 189 6.69e-17 77.8
MS.gene051649.t1 MTR_8g469430 46.875 96 44 1 80 168 87 182 1.01e-16 77.4
MS.gene051649.t1 MTR_6g011610 48.936 94 41 1 82 168 77 170 1.08e-16 77.0
MS.gene051649.t1 MTR_4g107650 48.864 88 45 0 82 169 95 182 1.82e-16 77.4
MS.gene051649.t1 MTR_5g038280 45.263 95 45 1 82 169 87 181 1.96e-15 74.3
MS.gene051649.t1 MTR_3g092150 41.935 93 47 1 85 170 41 133 6.25e-12 63.5
MS.gene051649.t1 MTR_5g019650 45.882 85 46 0 82 166 53 137 1.65e-11 62.0
MS.gene051649.t1 MTR_5g029320 34.375 128 72 2 41 167 61 177 2.33e-11 63.2
MS.gene051649.t1 MTR_5g019680 49.296 71 36 0 82 152 53 123 4.52e-11 60.5
MS.gene051649.t1 MTR_8g026960 41.463 82 48 0 86 167 38 119 6.08e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051649.t1 AT5G06710 56.425 179 63 5 40 209 140 312 9.05e-60 191
MS.gene051649.t1 AT4G37790 73.984 123 29 2 75 196 118 238 2.37e-59 188
MS.gene051649.t1 AT2G22800 72.358 123 31 2 75 196 105 225 2.16e-56 181
MS.gene051649.t1 AT4G16780 59.589 146 48 4 75 218 121 257 1.42e-52 171
MS.gene051649.t1 AT3G60390 66.667 123 40 1 72 194 152 273 5.53e-52 171
MS.gene051649.t1 AT5G47370 46.544 217 91 7 16 221 54 256 2.32e-50 165
MS.gene051649.t1 AT2G44910 68.376 117 34 2 81 196 162 276 7.31e-50 165
MS.gene051649.t1 AT4G17460 64.407 118 41 1 81 198 134 250 9.16e-47 156
MS.gene051649.t1 AT2G01430 46.584 161 73 5 45 196 93 249 4.55e-40 139
MS.gene051649.t1 AT1G70920 46.667 150 67 2 57 204 14 152 1.61e-35 124
MS.gene051649.t1 AT1G70920 46.667 150 67 2 57 204 44 182 1.80e-35 125
MS.gene051649.t1 AT5G06710 54.369 103 37 3 40 133 140 241 1.77e-24 98.2
MS.gene051649.t1 AT2G01430 46.465 99 44 3 44 133 92 190 5.21e-21 87.4
MS.gene051649.t1 AT3G01470 46.316 95 44 1 80 167 66 160 3.85e-18 81.3
MS.gene051649.t1 AT1G69780 45.455 99 52 1 73 169 74 172 1.19e-17 80.1
MS.gene051649.t1 AT1G26960 47.368 95 48 1 77 169 64 158 2.01e-17 79.0
MS.gene051649.t1 AT2G22430 38.686 137 71 3 46 172 23 156 5.77e-17 78.6
MS.gene051649.t1 AT5G15150 37.086 151 82 3 73 212 102 250 1.07e-16 77.8
MS.gene051649.t1 AT4G40060 43.810 105 55 1 72 172 49 153 1.74e-16 77.0
MS.gene051649.t1 AT5G65310 44.444 99 48 1 82 173 72 170 4.30e-16 75.9
MS.gene051649.t1 AT5G65310 44.444 99 48 1 82 173 54 152 4.41e-16 75.9
MS.gene051649.t1 AT1G27045 50.000 88 44 0 82 169 68 155 8.06e-16 73.9
MS.gene051649.t1 AT1G27045 57.576 66 28 0 82 147 25 90 1.25e-15 72.4
MS.gene051649.t1 AT1G27045 57.576 66 28 0 82 147 25 90 1.25e-15 72.4
MS.gene051649.t1 AT1G27045 50.000 88 44 0 82 169 68 155 1.26e-15 73.9
MS.gene051649.t1 AT1G27045 57.576 66 28 0 82 147 17 82 1.29e-15 72.4
MS.gene051649.t1 AT3G01220 42.593 108 51 2 73 169 74 181 3.87e-15 73.2
MS.gene051649.t1 AT2G36610 42.157 102 51 1 77 170 66 167 4.27e-15 71.2
MS.gene051649.t1 AT5G03790 40.449 89 53 0 82 170 77 165 9.28e-14 68.6
MS.gene051649.t1 AT2G46680 43.529 85 48 0 85 169 35 119 2.12e-13 67.8
MS.gene051649.t1 AT2G46680 43.529 85 48 0 85 169 35 119 2.30e-13 67.8
MS.gene051649.t1 AT5G03790 36.207 116 68 2 82 191 77 192 7.60e-13 65.1
MS.gene051649.t1 AT2G18550 37.864 103 63 1 66 168 46 147 5.39e-12 63.5
MS.gene051649.t1 AT4G36740 39.080 87 53 0 82 168 56 142 4.82e-11 60.8
MS.gene051649.t1 AT4G36740 39.080 87 53 0 82 168 55 141 5.21e-11 60.5
MS.gene051649.t1 AT3G61890 40.000 95 43 1 85 165 33 127 6.29e-11 60.5

Find 45 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCAACAACATTGCTTAT+TGG 0.141245 1.3:+5449216 MS.gene051649:CDS
TGCTGGAATCTTCATATAAA+AGG 0.190194 1.3:-5449130 None:intergenic
TCTTCACTCTCTTCCTTTGA+TGG 0.194879 1.3:-5447356 None:intergenic
ACATTTCCTATCCTTGTAAT+TGG 0.209590 1.3:-5447539 None:intergenic
GTGAGCCTAAGTTTCTTCCT+TGG 0.317530 1.3:-5447578 None:intergenic
AAAACAACAATCAAAAGTTT+TGG 0.344899 1.3:+5447601 MS.gene051649:CDS
TGAGCCTAAGTTTCTTCCTT+GGG 0.367322 1.3:-5447577 None:intergenic
GGAGAGTGGTGAGGAATTTG+AGG 0.383101 1.3:+5447499 MS.gene051649:CDS
ACCACTCTCCTTCCTGATGC+TGG 0.385112 1.3:-5447486 None:intergenic
GCTTATCCAATGCTTACATT+AGG 0.396378 1.3:+5447332 None:intergenic
TAGAGGTGTGGTTTCAAAAT+CGG 0.417824 1.3:+5448412 MS.gene051649:CDS
TTTCAAATTCCACCAGCATC+AGG 0.453960 1.3:+5447474 MS.gene051649:CDS
AGCAAATAAGCTGAATCTGC+AGG 0.462898 1.3:+5448380 MS.gene051649:CDS
CCTTCGTGCGAGACAATTTG+TGG 0.481936 1.3:+5449171 MS.gene051649:CDS
AAGCAATGTTGTTGAGGGTA+AGG 0.485816 1.3:-5449211 None:intergenic
GCTGGAATCTTCATATAAAA+GGG 0.492378 1.3:-5449129 None:intergenic
ATAGGAAATGTTGATAAAGA+TGG 0.494478 1.3:+5447551 MS.gene051649:CDS
GATGGTCCTAATGTAAGCAT+TGG 0.505729 1.3:-5447338 None:intergenic
GCCAATAAGCAATGTTGTTG+AGG 0.507378 1.3:-5449217 None:intergenic
GGTTTCAAAATCGGAGAGCC+AGG 0.511878 1.3:+5448421 MS.gene051649:CDS
GGAGAACAAGAAGTTGCAAA+AGG 0.515455 1.3:+5449065 MS.gene051649:CDS
CCAATAAGCAATGTTGTTGA+GGG 0.519543 1.3:-5449216 None:intergenic
CACAAATTGTCTCGCACGAA+GGG 0.524067 1.3:-5449170 None:intergenic
AGAGCATTCTACTCTTAATC+CGG 0.524461 1.3:+5447637 MS.gene051649:CDS
AAGGTGCCAATTACAAGGAT+AGG 0.527337 1.3:+5447533 MS.gene051649:CDS
CAGAACAAAGCTGAAACAAA+CGG 0.533275 1.3:+5448996 MS.gene051649:intron
ATTTGAGGTAGAGATAGAAA+AGG 0.543575 1.3:+5447514 MS.gene051649:CDS
ACTCTCCTTCCTGATGCTGG+TGG 0.545711 1.3:-5447483 None:intergenic
TAGAAAAGGTGCCAATTACA+AGG 0.547476 1.3:+5447528 MS.gene051649:CDS
GTAGCCCAAGGAAGAAACTT+AGG 0.555898 1.3:+5447573 MS.gene051649:CDS
CTTGCAGAAGTAAATTGAGT+AGG 0.581739 1.3:-5447437 None:intergenic
GCTTACATTAGGACCATCAA+AGG 0.583436 1.3:+5447343 MS.gene051649:CDS
TGTCTCGCACGAAGGGCAGA+TGG 0.584824 1.3:-5449163 None:intergenic
ATTTGTGGTGGCAACAACAA+TGG 0.596806 1.3:+5449186 MS.gene051649:CDS
CAGATGGTAAGTGTTGCTGC+TGG 0.599263 1.3:-5449147 None:intergenic
ACAACATTCAACATCAAAGA+CGG 0.613762 1.3:+5447394 MS.gene051649:CDS
AAATTCCACCAGCATCAGGA+AGG 0.618266 1.3:+5447478 MS.gene051649:CDS
TCTGCAGGCTAGACAAGTAG+AGG 0.619659 1.3:+5448395 MS.gene051649:CDS
TTGATAAAGATGGTAGCCCA+AGG 0.634722 1.3:+5447561 MS.gene051649:CDS
TCGTGCGAGACAATTTGTGG+TGG 0.644683 1.3:+5449174 MS.gene051649:CDS
ACCAGCATCAGGAAGGAGAG+TGG 0.645786 1.3:+5447485 MS.gene051649:CDS
GTGTTGCGAATCTCTAACAG+AGG 0.648660 1.3:+5449044 MS.gene051649:CDS
CCACAAATTGTCTCGCACGA+AGG 0.651452 1.3:-5449171 None:intergenic
CATCAGGAAGGAGAGTGGTG+AGG 0.670590 1.3:+5447490 MS.gene051649:CDS
AGGCTAGACAAGTAGAGGTG+TGG 0.674713 1.3:+5448400 MS.gene051649:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAAATTAAATTCTA+AGG - chr1.3:5448239-5448258 None:intergenic 10.0%
!! AAACAAAGAAGTAAAATATA+TGG - chr1.3:5448647-5448666 None:intergenic 15.0%
!! AAGTTTATAAAAATTGTTTC+AGG - chr1.3:5448144-5448163 None:intergenic 15.0%
!!! ACAATTTTTATAAACTTGTA+CGG + chr1.3:5448147-5448166 MS.gene051649:intron 15.0%
!!! ATTTTATTAGAATTAGATCT+TGG + chr1.3:5447934-5447953 MS.gene051649:intron 15.0%
!! AAATTTGTAATACATTGGAT+CGG - chr1.3:5448282-5448301 None:intergenic 20.0%
!! AGTTTCAAAATTTATTCTCT+TGG + chr1.3:5448015-5448034 MS.gene051649:intron 20.0%
!! ATGAGAATATTGATGAATTA+AGG - chr1.3:5447665-5447684 None:intergenic 20.0%
!! CTACAAAATTTGTAATACAT+TGG - chr1.3:5448287-5448306 None:intergenic 20.0%
!! TTTCAGGAAATTATTTATTC+TGG - chr1.3:5448128-5448147 None:intergenic 20.0%
!!! AAAACAACAATCAAAAGTTT+TGG + chr1.3:5447601-5447620 MS.gene051649:CDS 20.0%
!!! ACTTCTTTGTTTTTTTTTAC+TGG + chr1.3:5448655-5448674 MS.gene051649:intron 20.0%
!!! CATTTTTTTAGAAATGTTTC+TGG + chr1.3:5448196-5448215 MS.gene051649:intron 20.0%
!!! GAAACATTTCTAAAAAAATG+AGG - chr1.3:5448196-5448215 None:intergenic 20.0%
!!! TCATTTCCATAAAAACTTTT+TGG + chr1.3:5449251-5449270 MS.gene051649:CDS 20.0%
! ACAAAAAATGTTAACAGCTA+GGG + chr1.3:5448849-5448868 MS.gene051649:intron 25.0%
! AGACGTTTAAAAAGTTTAGA+AGG - chr1.3:5448890-5448909 None:intergenic 25.0%
! ATACAATTTCACAAAATCTG+AGG - chr1.3:5448941-5448960 None:intergenic 25.0%
! ATATATATTGTTAGAGCGAA+AGG + chr1.3:5448758-5448777 MS.gene051649:intron 25.0%
! ATATTGATGAATTAAGGTAC+CGG - chr1.3:5447659-5447678 None:intergenic 25.0%
! CATCAATATTCTCATATCTT+TGG + chr1.3:5447670-5447689 MS.gene051649:intron 25.0%
!! AATATCAAAACAAAAGTACG+TGG - chr1.3:5447725-5447744 None:intergenic 25.0%
!! ATAGGAAATGTTGATAAAGA+TGG + chr1.3:5447551-5447570 MS.gene051649:CDS 25.0%
AAAAGTTTAGAAGGAGGTTT+AGG - chr1.3:5448881-5448900 None:intergenic 30.0%
AAAGTTTAGAAGGAGGTTTA+GGG - chr1.3:5448880-5448899 None:intergenic 30.0%
ACAACATTCAACATCAAAGA+CGG + chr1.3:5447394-5447413 MS.gene051649:CDS 30.0%
ACATTTCCTATCCTTGTAAT+TGG - chr1.3:5447542-5447561 None:intergenic 30.0%
ATAAGGTAATATGCGATCAA+AGG - chr1.3:5448917-5448936 None:intergenic 30.0%
CACAAAAAATGTTAACAGCT+AGG + chr1.3:5448848-5448867 MS.gene051649:intron 30.0%
CGTTTAAAAAGTTTAGAAGG+AGG - chr1.3:5448887-5448906 None:intergenic 30.0%
GCTGGAATCTTCATATAAAA+GGG - chr1.3:5449132-5449151 None:intergenic 30.0%
GGTAAAATCTTGATATTCCT+AGG + chr1.3:5448077-5448096 MS.gene051649:intron 30.0%
TAAGGTAATATGCGATCAAA+GGG - chr1.3:5448916-5448935 None:intergenic 30.0%
TATGAAGCAAACTCAATCTA+AGG - chr1.3:5447996-5448015 None:intergenic 30.0%
TGCTGGAATCTTCATATAAA+AGG - chr1.3:5449133-5449152 None:intergenic 30.0%
TTAGAATTAGATCTTGGTCT+TGG + chr1.3:5447940-5447959 MS.gene051649:intron 30.0%
TTCACAAAATCTGAGGAATA+AGG - chr1.3:5448934-5448953 None:intergenic 30.0%
! AAAACAAAAGTACGTGGTAT+AGG - chr1.3:5447719-5447738 None:intergenic 30.0%
! ATTTGAGGTAGAGATAGAAA+AGG + chr1.3:5447514-5447533 MS.gene051649:CDS 30.0%
! ATTTTACCAAACACTTTGGT+GGG - chr1.3:5448065-5448084 None:intergenic 30.0%
! CAAGATTTTACCAAACACTT+TGG - chr1.3:5448069-5448088 None:intergenic 30.0%
! TCTCTTGGATTACATTTTCT+AGG + chr1.3:5448030-5448049 MS.gene051649:intron 30.0%
!! ACAACAATCAAAAGTTTTGG+AGG + chr1.3:5447604-5447623 MS.gene051649:CDS 30.0%
CAGAACAAAGCTGAAACAAA+CGG + chr1.3:5448996-5449015 MS.gene051649:intron 35.0%
CCAATAAGCAATGTTGTTGA+GGG - chr1.3:5449219-5449238 None:intergenic 35.0%
CGATACTATCTTAAAACGCA+CGG - chr1.3:5448459-5448478 None:intergenic 35.0%
CTTGATATTCCTAGGAAAGT+TGG + chr1.3:5448085-5448104 MS.gene051649:intron 35.0%
CTTGCAGAAGTAAATTGAGT+AGG - chr1.3:5447440-5447459 None:intergenic 35.0%
TGCATCATGACAATTGCTAA+TGG - chr1.3:5448528-5448547 None:intergenic 35.0%
! AGAGCATTCTACTCTTAATC+CGG + chr1.3:5447637-5447656 MS.gene051649:CDS 35.0%
! ATATTCCTAGGAAAGTTGGT+AGG + chr1.3:5448089-5448108 MS.gene051649:intron 35.0%
! ATTATTCCCACCAAAGTGTT+TGG + chr1.3:5448056-5448075 MS.gene051649:intron 35.0%
! CACACACAGTATTTTTCTCA+TGG + chr1.3:5447836-5447855 MS.gene051649:intron 35.0%
! GATTTTACCAAACACTTTGG+TGG - chr1.3:5448066-5448085 None:intergenic 35.0%
! TAGAGGTGTGGTTTCAAAAT+CGG + chr1.3:5448412-5448431 MS.gene051649:CDS 35.0%
!! TAGAAAAGGTGCCAATTACA+AGG + chr1.3:5447528-5447547 MS.gene051649:CDS 35.0%
AAGCAATGTTGTTGAGGGTA+AGG - chr1.3:5449214-5449233 None:intergenic 40.0%
AGCAAATAAGCTGAATCTGC+AGG + chr1.3:5448380-5448399 MS.gene051649:CDS 40.0%
AGGAGAAAACTTAGATGGCA+CGG + chr1.3:5448778-5448797 MS.gene051649:intron 40.0%
ATTTGTGGTGGCAACAACAA+TGG + chr1.3:5449186-5449205 MS.gene051649:CDS 40.0%
CCCTCAACAACATTGCTTAT+TGG + chr1.3:5449216-5449235 MS.gene051649:CDS 40.0%
GCCAATAAGCAATGTTGTTG+AGG - chr1.3:5449220-5449239 None:intergenic 40.0%
GCGAAAGGAGAAAACTTAGA+TGG + chr1.3:5448773-5448792 MS.gene051649:intron 40.0%
GCTTACATTAGGACCATCAA+AGG + chr1.3:5447343-5447362 MS.gene051649:CDS 40.0%
GGAGAACAAGAAGTTGCAAA+AGG + chr1.3:5449065-5449084 MS.gene051649:CDS 40.0%
TATTCTCTACGTGCGCAATA+TGG - chr1.3:5448815-5448834 None:intergenic 40.0%
TCTTCACTCTCTTCCTTTGA+TGG - chr1.3:5447359-5447378 None:intergenic 40.0%
TGAGCCTAAGTTTCTTCCTT+GGG - chr1.3:5447580-5447599 None:intergenic 40.0%
TTGATAAAGATGGTAGCCCA+AGG + chr1.3:5447561-5447580 MS.gene051649:CDS 40.0%
TTTCAAATTCCACCAGCATC+AGG + chr1.3:5447474-5447493 MS.gene051649:CDS 40.0%
! AAGGTGCCAATTACAAGGAT+AGG + chr1.3:5447533-5447552 MS.gene051649:CDS 40.0%
! TCTAAGGTGTGTTTGTGTCA+AGG - chr1.3:5448223-5448242 None:intergenic 40.0%
! TGGTCTTGGTTGATTGTGTT+TGG + chr1.3:5447954-5447973 MS.gene051649:intron 40.0%
AAATTCCACCAGCATCAGGA+AGG + chr1.3:5447478-5447497 MS.gene051649:CDS 45.0%
ACACACCTACCAACTTTCCT+AGG - chr1.3:5448097-5448116 None:intergenic 45.0%
CACAAATTGTCTCGCACGAA+GGG - chr1.3:5449173-5449192 None:intergenic 45.0%
GTAGCCCAAGGAAGAAACTT+AGG + chr1.3:5447573-5447592 MS.gene051649:CDS 45.0%
GTGAGCCTAAGTTTCTTCCT+TGG - chr1.3:5447581-5447600 None:intergenic 45.0%
GTGTTGCGAATCTCTAACAG+AGG + chr1.3:5449044-5449063 MS.gene051649:CDS 45.0%
AGGCTAGACAAGTAGAGGTG+TGG + chr1.3:5448400-5448419 MS.gene051649:CDS 50.0%
CCACAAATTGTCTCGCACGA+AGG - chr1.3:5449174-5449193 None:intergenic 50.0%
CCTTCGTGCGAGACAATTTG+TGG + chr1.3:5449171-5449190 MS.gene051649:CDS 50.0%
GCACGGAGCAGTAAATTACC+TGG - chr1.3:5448442-5448461 None:intergenic 50.0%
GGAGAGTGGTGAGGAATTTG+AGG + chr1.3:5447499-5447518 MS.gene051649:CDS 50.0%
GGTTTCAAAATCGGAGAGCC+AGG + chr1.3:5448421-5448440 MS.gene051649:CDS 50.0%
TCGTGCGAGACAATTTGTGG+TGG + chr1.3:5449174-5449193 MS.gene051649:CDS 50.0%
TCTGCAGGCTAGACAAGTAG+AGG + chr1.3:5448395-5448414 MS.gene051649:CDS 50.0%
! CAGATGGTAAGTGTTGCTGC+TGG - chr1.3:5449150-5449169 None:intergenic 50.0%
ACCACTCTCCTTCCTGATGC+TGG - chr1.3:5447489-5447508 None:intergenic 55.0%
ACCAGCATCAGGAAGGAGAG+TGG + chr1.3:5447485-5447504 MS.gene051649:CDS 55.0%
ACTCTCCTTCCTGATGCTGG+TGG - chr1.3:5447486-5447505 None:intergenic 55.0%
CATCAGGAAGGAGAGTGGTG+AGG + chr1.3:5447490-5447509 MS.gene051649:CDS 55.0%
TGTCTCGCACGAAGGGCAGA+TGG - chr1.3:5449166-5449185 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 5447341 5449278 5447341 ID=MS.gene051649
chr1.3 mRNA 5447341 5449278 5447341 ID=MS.gene051649.t1;Parent=MS.gene051649
chr1.3 exon 5447341 5447658 5447341 ID=MS.gene051649.t1.exon1;Parent=MS.gene051649.t1
chr1.3 CDS 5447341 5447658 5447341 ID=cds.MS.gene051649.t1;Parent=MS.gene051649.t1
chr1.3 exon 5448363 5448442 5448363 ID=MS.gene051649.t1.exon2;Parent=MS.gene051649.t1
chr1.3 CDS 5448363 5448442 5448363 ID=cds.MS.gene051649.t1;Parent=MS.gene051649.t1
chr1.3 exon 5448999 5449278 5448999 ID=MS.gene051649.t1.exon3;Parent=MS.gene051649.t1
chr1.3 CDS 5448999 5449278 5448999 ID=cds.MS.gene051649.t1;Parent=MS.gene051649.t1
Gene Sequence

>MS.gene051649

ATGCTTACATTAGGACCATCAAAGGAAGAGAGTGAAGAAAATACTAAAATTCAACAACATTCAACATCAAAGACGGAATCTTGTGATCAAAATTTACCTACTCAATTTACTTCTGCAAGCATAGAGTCTTCATTTTCAAATTCCACCAGCATCAGGAAGGAGAGTGGTGAGGAATTTGAGGTAGAGATAGAAAAGGTGCCAATTACAAGGATAGGAAATGTTGATAAAGATGGTAGCCCAAGGAAGAAACTTAGGCTCACAAAACAACAATCAAAAGTTTTGGAGGAAAACTTCAAAGAGCATTCTACTCTTAATCCGGTACCTTAATTCATCAATATTCTCATATCTTTGGTTGCTTTAAATAATTCTTTTGCTCCTATACCACGTACTTTTGTTTTGATATTTTTATTTTAGTACTAATAACTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGACACACACACACAGTATTTTTCTCATGGCACACTAATTGTGTGTAGCATATAGTAAATGAAGAATATGATATCATTTTAAACGAGTTTTCTCGATGATATTTGATTTTATTAGAATTAGATCTTGGTCTTGGTTGATTGTGTTTGGTCTAAAACTGAGAAGACCTTAGATTGAGTTTGCTTCATAGTTTCAAAATTTATTCTCTTGGATTACATTTTCTAGGAATATTATTCCCACCAAAGTGTTTGGTAAAATCTTGATATTCCTAGGAAAGTTGGTAGGTGTGTTTTATTTTCCAGAATAAATAATTTCCTGAAACAATTTTTATAAACTTGTACGGAATATAATAATATTAAATTCTAACCTCATTTTTTTAGAAATGTTTCTGGACCTTGACACAAACACACCTTAGAATTTAATTTTTTTTCTAATTTGTGCAATTGCTACATCCGATCCAATGTATTACAAATTTTGTAGCATGAGTATATGTTGCTTTGTTATTATTAATAAAAAGAAAATCTCATTTTCTTCAGAAGCAAAAGCAAGCATTAGCAAATAAGCTGAATCTGCAGGCTAGACAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGTAATTTACTGCTCCGTGCGTTTTAAGATAGTATCGTTTAAAGTTCTTTTATATAGATTAAAAAATTTACAAAACTGTTTATCCATTAGCAATTGTCATGATGCATAACAAAATATAATGTCTTGAGACTTATGTACACACAAAAAGTTGTGATAAAATTGAAATAATGAAATTATACTATTGATGTTACATTAAAAAGTACCATATATTTTACTTCTTTGTTTTTTTTTACTGGATCGCACATACTTTACTTTATTGCTTCTTTAATAGATAAATGTTACTTTTTTTAATAATAAATAAATGTTACTTGTTAGTATATATATTGTTAGAGCGAAAGGAGAAAACTTAGATGGCACGGATCTCAACTCTCCATATTGCGCACGTAGAGAATACTCGATTTACACACACAAAAAATGTTAACAGCTAGGGTCAAACCCTAAACCTCCTTCTAAACTTTTTAAACGTCTCGACCCTTTGATCGCATATTACCTTATTCCTCAGATTTTGTGAAATTGTATTTCTTGCATATACTAATGATTACTATATACATGTTCAGAACAAAGCTGAAACAAACGGAATCTGATTGTGAAATACTGAAGAAGTGTTGCGAATCTCTAACAGAGGAGAACAAGAAGTTGCAAAAGGAGCTACAAGAACTAAAGTCAATGCAAACAGTAGCAGCAGCACCCTTTTATATGAAGATTCCAGCAGCAACACTTACCATCTGCCCTTCGTGCGAGACAATTTGTGGTGGCAACAACAATGGCTCCTTACCCTCAACAACATTGCTTATTGGCTCAAAGAATCATCATTTCCATAAAAACTTTTTGGTTTGA
Protein sequence

>MS.gene051649.t1

MLTLGPSKEESEENTKIQQHSTSKTESCDQNLPTQFTSASIESSFSNSTSIRKESGEEFEVEIEKVPITRIGNVDKDGSPRKKLRLTKQQSKVLEENFKEHSTLNPKQKQALANKLNLQARQVEVWFQNRRARTKLKQTESDCEILKKCCESLTEENKKLQKELQELKSMQTVAAAPFYMKIPAATLTICPSCETICGGNNNGSLPSTTLLIGSKNHHFHKNFLV