AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24590.t1 MTR_4g059870 46.899 516 204 17 3 489 1 475 4.73e-129 384
MS.gene24590.t1 MTR_2g099990 56.325 332 88 7 38 369 46 320 9.45e-116 349
MS.gene24590.t1 MTR_2g090745 46.781 466 169 18 46 488 15 424 5.55e-112 338
MS.gene24590.t1 MTR_8g017210 88.623 167 18 1 38 204 62 227 8.17e-112 341
MS.gene24590.t1 MTR_2g093960 58.333 288 106 5 38 325 32 305 9.85e-112 337
MS.gene24590.t1 MTR_1g094115 87.952 166 18 2 36 200 44 208 1.89e-109 335
MS.gene24590.t1 MTR_1g016010 52.695 334 76 7 38 369 41 294 4.65e-108 329
MS.gene24590.t1 MTR_1g112270 83.333 168 27 1 41 208 47 213 2.32e-106 328
MS.gene24590.t1 MTR_1g112270 78.212 179 27 2 41 208 47 224 1.34e-102 319
MS.gene24590.t1 MTR_2g099990 45.626 423 155 12 62 470 1 362 7.85e-99 303
MS.gene24590.t1 MTR_1g094115 77.108 166 19 3 36 200 44 191 2.52e-91 288
MS.gene24590.t1 MTR_2g017720 76.724 116 21 2 48 163 323 432 9.75e-56 192
MS.gene24590.t1 MTR_3g102000 64.423 104 29 3 65 164 36 135 5.40e-38 139
MS.gene24590.t1 MTR_5g030560 84.444 45 7 0 48 92 16 60 6.86e-22 90.1
MS.gene24590.t1 MTR_1g093095 34.028 144 83 4 59 191 107 249 4.26e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24590.t1 AT5G03150 50.772 518 209 12 1 490 1 500 9.96e-141 414
MS.gene24590.t1 AT5G66730 53.213 389 125 10 19 371 19 386 3.94e-115 349
MS.gene24590.t1 AT3G50700 86.364 176 21 2 26 201 24 196 6.20e-114 344
MS.gene24590.t1 AT3G45260 53.175 378 123 9 38 393 39 384 1.60e-113 343
MS.gene24590.t1 AT3G45260 53.175 378 123 9 38 393 39 384 1.60e-113 343
MS.gene24590.t1 AT5G44160 50.811 370 153 9 34 398 33 378 4.69e-113 342
MS.gene24590.t1 AT5G60470 73.077 208 49 2 3 205 2 207 9.69e-112 338
MS.gene24590.t1 AT5G60470 73.077 208 49 2 3 205 6 211 1.09e-111 338
MS.gene24590.t1 AT4G02670 83.908 174 28 0 37 210 52 225 3.84e-111 335
MS.gene24590.t1 AT4G02670 83.908 174 28 0 37 210 54 227 4.56e-111 335
MS.gene24590.t1 AT1G03840 50.526 380 116 10 34 368 37 389 1.33e-110 337
MS.gene24590.t1 AT2G02080 50.689 363 146 9 29 372 46 394 1.68e-109 335
MS.gene24590.t1 AT2G02080 50.689 363 146 9 29 372 46 394 1.68e-109 335
MS.gene24590.t1 AT2G02080 50.689 363 146 9 29 372 46 394 1.68e-109 335
MS.gene24590.t1 AT2G02080 50.689 363 146 9 29 372 46 394 1.68e-109 335
MS.gene24590.t1 AT3G13810 85.119 168 25 0 38 205 51 218 2.86e-109 333
MS.gene24590.t1 AT3G13810 85.119 168 25 0 38 205 70 237 4.37e-109 334
MS.gene24590.t1 AT3G13810 85.119 168 25 0 38 205 70 237 4.37e-109 334
MS.gene24590.t1 AT3G13810 85.119 168 25 0 38 205 65 232 4.78e-109 333
MS.gene24590.t1 AT1G03840 50.000 380 116 11 34 368 37 387 8.22e-107 328
MS.gene24590.t1 AT1G14580 78.736 174 36 1 37 210 52 224 1.74e-106 325
MS.gene24590.t1 AT1G14580 78.736 174 36 1 37 210 52 224 1.74e-106 325
MS.gene24590.t1 AT1G14580 78.736 174 36 1 37 210 66 238 3.25e-106 325
MS.gene24590.t1 AT5G44160 50.000 356 149 9 48 398 8 339 5.62e-105 320
MS.gene24590.t1 AT2G02070 83.626 171 26 2 38 207 52 221 8.83e-105 325
MS.gene24590.t1 AT2G02070 83.626 171 26 2 38 207 52 221 8.83e-105 325
MS.gene24590.t1 AT3G13810 85.987 157 22 0 49 205 68 224 3.08e-102 316
MS.gene24590.t1 AT3G13810 85.987 157 22 0 49 205 82 238 4.28e-102 316
MS.gene24590.t1 AT5G60470 82.166 157 28 0 49 205 46 202 4.82e-99 306
MS.gene24590.t1 AT2G02080 48.788 330 137 8 62 372 1 317 1.97e-92 288
MS.gene24590.t1 AT2G02080 48.788 330 137 8 62 372 1 317 1.97e-92 288
MS.gene24590.t1 AT2G01940 65.217 161 55 1 35 194 41 201 3.52e-76 246
MS.gene24590.t1 AT1G25250 63.580 162 57 2 33 192 28 189 2.32e-75 242
MS.gene24590.t1 AT1G68130 63.462 156 56 1 38 192 41 196 2.71e-74 241
MS.gene24590.t1 AT2G01940 64.198 162 56 2 35 194 41 202 1.30e-72 237
MS.gene24590.t1 AT1G25250 65.306 147 49 2 48 192 20 166 7.73e-71 230
MS.gene24590.t1 AT2G01940 63.393 112 40 1 84 194 1 112 6.84e-47 167
MS.gene24590.t1 AT1G25250 63.063 111 39 2 84 192 1 111 4.34e-46 163
MS.gene24590.t1 AT1G68130 61.818 110 41 1 84 192 1 110 5.31e-46 164
MS.gene24590.t1 AT5G22890 32.673 202 118 7 5 188 150 351 1.60e-24 105
MS.gene24590.t1 AT1G34370 34.810 158 90 4 47 191 14 171 1.14e-23 101
MS.gene24590.t1 AT1G34370 34.810 158 90 4 47 191 224 381 2.67e-23 103
MS.gene24590.t1 AT1G34370 34.810 158 90 4 47 191 224 381 2.67e-23 103
MS.gene24590.t1 AT1G13290 35.849 159 89 7 59 205 93 250 2.07e-21 95.1
MS.gene24590.t1 AT3G20880 34.752 141 83 4 59 191 248 387 4.31e-19 89.7
MS.gene24590.t1 AT1G34790 32.948 173 100 5 51 208 129 300 5.71e-19 87.8
MS.gene24590.t1 AT1G51220 32.877 146 89 4 54 191 165 309 2.12e-18 87.0
MS.gene24590.t1 AT3G57670 31.548 168 98 5 54 205 204 370 2.19e-18 87.4
MS.gene24590.t1 AT1G08290 37.037 135 75 4 66 191 179 312 4.19e-18 85.9

Find 93 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTTCTGGTTCTGGTTC+TGG 0.197737 1.3:-46656003 MS.gene24590:CDS
TGGAAGATTTCTCTTCTTCT+TGG 0.211257 1.3:+46657561 None:intergenic
CACCATGGTGGTTCTGGTTC+TGG 0.254794 1.3:-46656009 MS.gene24590:CDS
GGAATTCCACATCCACAATT+TGG 0.260215 1.3:-46656618 MS.gene24590:CDS
CAGAAGGAGCATTAGGTTTA+GGG 0.264157 1.3:+46657587 None:intergenic
AGTGAAGTGGATAGTGAAAA+AGG 0.270126 1.3:+46657649 None:intergenic
CAAGTAGATTTCAATGGAAT+TGG 0.274341 1.3:-46656579 MS.gene24590:CDS
GGAAGATTTCTCTTCTTCTT+GGG 0.283013 1.3:+46657562 None:intergenic
ACAGAAGGAGCATTAGGTTT+AGG 0.289450 1.3:+46657586 None:intergenic
AAACAACAACTCTATGATTA+TGG 0.293503 1.3:-46656556 MS.gene24590:CDS
GGAGCATTAGGTTTAGGGTT+AGG 0.301624 1.3:+46657592 None:intergenic
TTTGTTGCCATGAGTGTCTT+TGG 0.309658 1.3:+46657400 None:intergenic
ATTATGCACCATGGTGGTTC+TGG 0.314183 1.3:-46656015 MS.gene24590:CDS
ATAAACCAGAAGAACCAAAA+AGG 0.329036 1.3:+46656463 None:intergenic
TGGTTCTGGTTCAAACTCTA+TGG 0.329623 1.3:-46655989 MS.gene24590:CDS
CTATCAAAGCCTGCTTCTTC+CGG 0.333625 1.3:-46656321 MS.gene24590:CDS
GACCTCTTCTATGTAGTTGA+AGG 0.344711 1.3:+46657329 None:intergenic
GAGCATTAGGTTTAGGGTTA+GGG 0.346709 1.3:+46657593 None:intergenic
TTTCTTAATAACATCTTTGT+TGG 0.351397 1.3:+46657276 None:intergenic
CATGGAATACTTCAAAATAT+TGG 0.352848 1.3:-46656642 MS.gene24590:CDS
TCCAATATGCAAATGATTCC+TGG 0.354400 1.3:-46657676 None:intergenic
TTGGGGACAGAAGGAGCATT+AGG 0.361121 1.3:+46657580 None:intergenic
GTCCCATTTCATGATTCCCT+TGG 0.362528 1.3:+46656499 None:intergenic
TTTCCTTGTTGATCACTTTG+TGG 0.363250 1.3:+46656045 None:intergenic
TCTTCTTCATCATCAATGTT+TGG 0.374372 1.3:-46656384 MS.gene24590:CDS
ATGAATATACCTGGTGTTCC+TGG 0.396720 1.3:+46657541 None:intergenic
AAACCAAGGGAATCATGAAA+TGG 0.400103 1.3:-46656502 MS.gene24590:CDS
TTTATCTGAGATAGTTCAAA+TGG 0.400334 1.3:-46656445 MS.gene24590:CDS
CACTATCCACTTCACTTGGT+GGG 0.416726 1.3:-46657642 MS.gene24590:CDS
TATGAGCTTTCCAATCAGAT+TGG 0.425071 1.3:+46657107 None:intergenic
CTCTTCTTCTTGGGGACAGA+AGG 0.425270 1.3:+46657571 None:intergenic
TTCTACTAGTTCAGCTATGT+TGG 0.428171 1.3:-46656145 MS.gene24590:CDS
TCTACTAGTTCAGCTATGTT+GGG 0.430741 1.3:-46656144 MS.gene24590:CDS
TGGTGGACACAAGTCTTCTC+TGG 0.431235 1.3:+46657238 None:intergenic
AGAGCAATAACCTCGGCATC+TGG 0.433782 1.3:+46657427 None:intergenic
TCACTATCCACTTCACTTGG+TGG 0.459561 1.3:-46657643 MS.gene24590:CDS
GATCTCTGTCTTAGCTTCCA+TGG 0.464655 1.3:+46657298 None:intergenic
CTGATTACCTGTGAATTGAA+TGG 0.467069 1.3:+46655858 None:intergenic
AATATGCAGTCCAATCTGAT+TGG 0.470247 1.3:-46657117 MS.gene24590:CDS
AAAGGCCAAGTTTATCACTT+TGG 0.471302 1.3:-46656527 MS.gene24590:CDS
AAGAAGAAGAGAAATCTTCC+AGG 0.472027 1.3:-46657559 MS.gene24590:CDS
GAAGATTTCTCTTCTTCTTG+GGG 0.478434 1.3:+46657563 None:intergenic
TTTCTTGGTGTGAGTGGTGG+AGG 0.481376 1.3:-46655934 MS.gene24590:CDS
GCTTCTTCCATTCAATTCAC+AGG 0.484056 1.3:-46655865 MS.gene24590:CDS
TATCATCAAGTAGATTTCAA+TGG 0.492025 1.3:-46656585 MS.gene24590:CDS
TCTGTCTTAGCTTCCATGGA+AGG 0.492579 1.3:+46657302 None:intergenic
GTGAGTGGTGGAGGAAGAAC+TGG 0.493538 1.3:-46655925 MS.gene24590:CDS
AACCAAGGGAATCATGAAAT+GGG 0.497808 1.3:-46656501 MS.gene24590:CDS
TCTGTGAAATATGCAACAAA+GGG 0.500256 1.3:-46657369 MS.gene24590:CDS
CATCCACAATTTGGTTCACA+TGG 0.504169 1.3:-46656609 MS.gene24590:CDS
AATATTATACCTTGAGAAGA+GGG 0.509866 1.3:+46657042 None:intergenic
ATCTGTGAAATATGCAACAA+AGG 0.510966 1.3:-46657370 MS.gene24590:CDS
AGCAGAAACAGTAACAGAAC+CGG 0.511338 1.3:+46656302 None:intergenic
GAAGAGGTCACAACCTTCCA+TGG 0.514490 1.3:-46657315 MS.gene24590:CDS
TTTAACCAAAGTGATAAACT+TGG 0.528252 1.3:+46656522 None:intergenic
AGATCACCAAGTGCTCTTGA+AGG 0.529586 1.3:+46657211 None:intergenic
GCAGATGTTGAATTTGAAGC+AGG 0.534808 1.3:+46656357 None:intergenic
GGAATACTTCAAAATATTGG+TGG 0.535088 1.3:-46656639 MS.gene24590:CDS
TGATGAAGAAGAACAAATCA+AGG 0.539973 1.3:+46656395 None:intergenic
CATGACCCTTCAAGAGCACT+TGG 0.544018 1.3:-46657217 MS.gene24590:CDS
ATGTTGGGAAATAGTAGTGC+AGG 0.545999 1.3:-46656129 MS.gene24590:CDS
TGTGAACCAAATTGTGGATG+TGG 0.555768 1.3:+46656612 None:intergenic
ACTAAACCCACCAAGTGAAG+TGG 0.557454 1.3:+46657636 None:intergenic
TATCACTTTGGTTAAACCAA+GGG 0.558927 1.3:-46656515 MS.gene24590:CDS
AGAAATCTTCCAGGAACACC+AGG 0.564051 1.3:-46657550 MS.gene24590:intron
CAAGTGCTCTTGAAGGGTCA+TGG 0.570425 1.3:+46657218 None:intergenic
GAAAGCACGGTGAAAAGAAG+TGG 0.572977 1.3:-46657162 MS.gene24590:CDS
GTAACAGAACCGGAAGAAGC+AGG 0.576220 1.3:+46656312 None:intergenic
AAATATTATACCTTGAGAAG+AGG 0.578176 1.3:+46657041 None:intergenic
AACCTTCAACTACATAGAAG+AGG 0.579451 1.3:-46657331 MS.gene24590:CDS
GCTGAACTAGTAGAAGAAGA+AGG 0.581667 1.3:+46656153 None:intergenic
TTATCTGAGATAGTTCAAAT+GGG 0.582881 1.3:-46656444 MS.gene24590:CDS
ACTGTGGCACCCTCTTCTCA+AGG 0.585281 1.3:-46657051 MS.gene24590:intron
GATCACCAAGTGCTCTTGAA+GGG 0.591900 1.3:+46657212 None:intergenic
AGAGCACTTGGTGATCTCAC+AGG 0.592028 1.3:-46657205 MS.gene24590:CDS
TCACAACATGGTTTATCACA+TGG 0.594739 1.3:-46656660 MS.gene24590:CDS
CTATGATTATGGAGCAACAA+AGG 0.599161 1.3:-46656545 MS.gene24590:CDS
TTATCACTTTGGTTAAACCA+AGG 0.601736 1.3:-46656516 MS.gene24590:CDS
GATAAACCATGTTGTGAATG+TGG 0.612705 1.3:+46656666 None:intergenic
TCTTGAGGTAGAAACTGATG+TGG 0.615192 1.3:+46655901 None:intergenic
TATCCATGTGAACCAAATTG+TGG 0.627461 1.3:+46656606 None:intergenic
AAGCACTTTAGTAGAAAGCA+CGG 0.627488 1.3:-46657175 MS.gene24590:CDS
TTGAATATTATGCACCATGG+TGG 0.642049 1.3:-46656021 MS.gene24590:CDS
TCTATCACCAAAGACACTCA+TGG 0.646655 1.3:-46657407 MS.gene24590:CDS
AGAAGAGCAGTAGCTGACAT+TGG 0.651547 1.3:+46656276 None:intergenic
ATGAATCCACATTCACAACA+TGG 0.651933 1.3:-46656672 MS.gene24590:CDS
CTATACAGATCCAGATGCCG+AGG 0.652908 1.3:-46657437 MS.gene24590:intron
GTGCTCTTGAAGGGTCATGG+TGG 0.656702 1.3:+46657221 None:intergenic
AGAGAATACAAATGTGACTG+TGG 0.678918 1.3:-46657067 MS.gene24590:CDS
AACCAGAACCAGAACCACCA+TGG 0.691492 1.3:+46656007 None:intergenic
AAATTGAATATTATGCACCA+TGG 0.694171 1.3:-46656024 MS.gene24590:CDS
TGGTGATAGAGCAATAACCT+CGG 0.716517 1.3:+46657420 None:intergenic
GGACCACAAAGTGATCAACA+AGG 0.742344 1.3:-46656048 MS.gene24590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTCATATATTTCAAAT+TGG - chr1.3:46656047-46656066 MS.gene24590:CDS 15.0%
!! CATATATTTCAAATTGGTAA+TGG - chr1.3:46656053-46656072 MS.gene24590:CDS 20.0%
!! GAATTTAATGCTTTCTTTAA+TGG - chr1.3:46656637-46656656 MS.gene24590:CDS 20.0%
!! TTTCTTAATAACATCTTTGT+TGG + chr1.3:46656252-46656271 None:intergenic 20.0%
!!! CTAAATTTTAAGAATGAAGA+AGG - chr1.3:46656820-46656839 MS.gene24590:intron 20.0%
! AAACAACAACTCTATGATTA+TGG - chr1.3:46656969-46656988 MS.gene24590:intron 25.0%
! AAACTAGAACTAAAAATGGA+AGG + chr1.3:46657336-46657355 None:intergenic 25.0%
! AAATATTATACCTTGAGAAG+AGG + chr1.3:46656487-46656506 None:intergenic 25.0%
! AAATTGAATATTATGCACCA+TGG - chr1.3:46657501-46657520 MS.gene24590:intron 25.0%
! AACTAGAACTAAAAATGGAA+GGG + chr1.3:46657335-46657354 None:intergenic 25.0%
! AATATTATACCTTGAGAAGA+GGG + chr1.3:46656486-46656505 None:intergenic 25.0%
! ACAAAAGATTGGTGAATAAA+AGG + chr1.3:46656520-46656539 None:intergenic 25.0%
! ACCAAAACTAGAACTAAAAA+TGG + chr1.3:46657340-46657359 None:intergenic 25.0%
! CATGGAATACTTCAAAATAT+TGG - chr1.3:46656883-46656902 MS.gene24590:intron 25.0%
! TAATCATGAATGAATATACC+TGG + chr1.3:46655996-46656015 None:intergenic 25.0%
! TATCATCAAGTAGATTTCAA+TGG - chr1.3:46656940-46656959 MS.gene24590:intron 25.0%
! TTATCACAGAAACAAAAGAT+TGG + chr1.3:46656531-46656550 None:intergenic 25.0%
! TTTAACCAAAGTGATAAACT+TGG + chr1.3:46657006-46657025 None:intergenic 25.0%
!! AATTTGACAAGAGATTTTCT+TGG - chr1.3:46657576-46657595 MS.gene24590:CDS 25.0%
!! TTATCTGAGATAGTTCAAAT+GGG - chr1.3:46657081-46657100 MS.gene24590:CDS 25.0%
!! TTTATCTGAGATAGTTCAAA+TGG - chr1.3:46657080-46657099 MS.gene24590:CDS 25.0%
!!! GGATTATATTTTTATGTGTC+TGG - chr1.3:46656658-46656677 MS.gene24590:CDS 25.0%
!!! TCCATTTTTAGTTCTAGTTT+TGG - chr1.3:46657336-46657355 MS.gene24590:CDS 25.0%
!!! TGTTGATATTTTGAACAGAA+AGG - chr1.3:46656717-46656736 MS.gene24590:CDS 25.0%
AAAGCTCATACAAAAACATG+TGG - chr1.3:46656431-46656450 MS.gene24590:CDS 30.0%
ATAAACCAGAAGAACCAAAA+AGG + chr1.3:46657065-46657084 None:intergenic 30.0%
ATCTGTGAAATATGCAACAA+AGG - chr1.3:46656155-46656174 MS.gene24590:CDS 30.0%
CAAGTAGATTTCAATGGAAT+TGG - chr1.3:46656946-46656965 MS.gene24590:intron 30.0%
GGAATACTTCAAAATATTGG+TGG - chr1.3:46656886-46656905 MS.gene24590:intron 30.0%
TAAACCAGAAGAACCAAAAA+GGG + chr1.3:46657064-46657083 None:intergenic 30.0%
TATCACTTTGGTTAAACCAA+GGG - chr1.3:46657010-46657029 MS.gene24590:intron 30.0%
TCTGTGAAATATGCAACAAA+GGG - chr1.3:46656156-46656175 MS.gene24590:CDS 30.0%
TCTTCTTCATCATCAATGTT+TGG - chr1.3:46657141-46657160 MS.gene24590:CDS 30.0%
TGATGAAGAAGAACAAATCA+AGG + chr1.3:46657133-46657152 None:intergenic 30.0%
TTATCACTTTGGTTAAACCA+AGG - chr1.3:46657009-46657028 MS.gene24590:intron 30.0%
! TTTGATCAGTTTTTCATGCA+TGG - chr1.3:46657456-46657475 MS.gene24590:intron 30.0%
!! CAAAGTTCTAATTCCCTTTT+TGG - chr1.3:46657048-46657067 MS.gene24590:intron 30.0%
!!! AGATTGGACTGCATATTTTT+TGG + chr1.3:46656405-46656424 None:intergenic 30.0%
AAACCAAGGGAATCATGAAA+TGG - chr1.3:46657023-46657042 MS.gene24590:intron 35.0%
AAAGGCCAAGTTTATCACTT+TGG - chr1.3:46656998-46657017 MS.gene24590:intron 35.0%
AACCAAGGGAATCATGAAAT+GGG - chr1.3:46657024-46657043 MS.gene24590:intron 35.0%
AACCTTCAACTACATAGAAG+AGG - chr1.3:46656194-46656213 MS.gene24590:CDS 35.0%
AAGAAGAAGAGAAATCTTCC+AGG - chr1.3:46655966-46655985 MS.gene24590:CDS 35.0%
AAGCACTTTAGTAGAAAGCA+CGG - chr1.3:46656350-46656369 MS.gene24590:CDS 35.0%
AATATGCAGTCCAATCTGAT+TGG - chr1.3:46656408-46656427 MS.gene24590:CDS 35.0%
AGAGAATACAAATGTGACTG+TGG - chr1.3:46656458-46656477 MS.gene24590:CDS 35.0%
AGTGAAGTGGATAGTGAAAA+AGG + chr1.3:46655879-46655898 None:intergenic 35.0%
ATGAATCCACATTCACAACA+TGG - chr1.3:46656853-46656872 MS.gene24590:intron 35.0%
CCAATCATGTATGTTGTGTT+AGG - chr1.3:46656610-46656629 MS.gene24590:CDS 35.0%
CCTAACACAACATACATGAT+TGG + chr1.3:46656613-46656632 None:intergenic 35.0%
CTATGATTATGGAGCAACAA+AGG - chr1.3:46656980-46656999 MS.gene24590:intron 35.0%
CTGATTACCTGTGAATTGAA+TGG + chr1.3:46657670-46657689 None:intergenic 35.0%
GAAGATTTCTCTTCTTCTTG+GGG + chr1.3:46655965-46655984 None:intergenic 35.0%
GATAAACCATGTTGTGAATG+TGG + chr1.3:46656862-46656881 None:intergenic 35.0%
GGAAGATTTCTCTTCTTCTT+GGG + chr1.3:46655966-46655985 None:intergenic 35.0%
GTGAAGTGGATAGTGAAAAA+GGG + chr1.3:46655878-46655897 None:intergenic 35.0%
TATCCATGTGAACCAAATTG+TGG + chr1.3:46656922-46656941 None:intergenic 35.0%
TATGAGCTTTCCAATCAGAT+TGG + chr1.3:46656421-46656440 None:intergenic 35.0%
TCACAACATGGTTTATCACA+TGG - chr1.3:46656865-46656884 MS.gene24590:intron 35.0%
TCATATTTGTGACATGTACG+AGG - chr1.3:46656582-46656601 MS.gene24590:CDS 35.0%
TCTACTAGTTCAGCTATGTT+GGG - chr1.3:46657381-46657400 MS.gene24590:CDS 35.0%
TGGAAGATTTCTCTTCTTCT+TGG + chr1.3:46655967-46655986 None:intergenic 35.0%
TTCTACTAGTTCAGCTATGT+TGG - chr1.3:46657380-46657399 MS.gene24590:CDS 35.0%
TTGAATATTATGCACCATGG+TGG - chr1.3:46657504-46657523 MS.gene24590:intron 35.0%
TTTCCTTGTTGATCACTTTG+TGG + chr1.3:46657483-46657502 None:intergenic 35.0%
! TTTTCACTATCCACTTCACT+TGG - chr1.3:46655879-46655898 MS.gene24590:CDS 35.0%
!! GCAAATTTTGCTATCTCTTG+AGG + chr1.3:46657642-46657661 None:intergenic 35.0%
!! GTTGAAGGTTTTGATCTCTT+TGG + chr1.3:46656184-46656203 None:intergenic 35.0%
!!! AATTCCCTTTTTGGTTCTTC+TGG - chr1.3:46657057-46657076 MS.gene24590:CDS 35.0%
AGCAGAAACAGTAACAGAAC+CGG + chr1.3:46657226-46657245 None:intergenic 40.0%
ATGAATATACCTGGTGTTCC+TGG + chr1.3:46655987-46656006 None:intergenic 40.0%
ATGTTGGGAAATAGTAGTGC+AGG - chr1.3:46657396-46657415 MS.gene24590:CDS 40.0%
CTGCAAAAAGCAGCTCAAAT+GGG - chr1.3:46657270-46657289 MS.gene24590:CDS 40.0%
GACCTCTTCTATGTAGTTGA+AGG + chr1.3:46656199-46656218 None:intergenic 40.0%
GCTGAACTAGTAGAAGAAGA+AGG + chr1.3:46657375-46657394 None:intergenic 40.0%
GCTTCTTCCATTCAATTCAC+AGG - chr1.3:46657660-46657679 MS.gene24590:CDS 40.0%
GGAATTCCACATCCACAATT+TGG - chr1.3:46656907-46656926 MS.gene24590:intron 40.0%
TCTATCACCAAAGACACTCA+TGG - chr1.3:46656118-46656137 MS.gene24590:CDS 40.0%
TCTGCAAAAAGCAGCTCAAA+TGG - chr1.3:46657269-46657288 MS.gene24590:CDS 40.0%
TCTTGAGGTAGAAACTGATG+TGG + chr1.3:46657627-46657646 None:intergenic 40.0%
TGGTGATAGAGCAATAACCT+CGG + chr1.3:46656108-46656127 None:intergenic 40.0%
TGTGAACCAAATTGTGGATG+TGG + chr1.3:46656916-46656935 None:intergenic 40.0%
TTTGTTGCCATGAGTGTCTT+TGG + chr1.3:46656128-46656147 None:intergenic 40.0%
! CAGAGCTTTTTGTGATGCAT+TGG - chr1.3:46656756-46656775 MS.gene24590:CDS 40.0%
! CATCCACAATTTGGTTCACA+TGG - chr1.3:46656916-46656935 MS.gene24590:intron 40.0%
! GAGCATTAGGTTTAGGGTTA+GGG + chr1.3:46655935-46655954 None:intergenic 40.0%
! GCAGATGTTGAATTTGAAGC+AGG + chr1.3:46657171-46657190 None:intergenic 40.0%
!! ACAGAAGGAGCATTAGGTTT+AGG + chr1.3:46655942-46655961 None:intergenic 40.0%
!! AGAGATTTTCTTGGTGTGAG+TGG - chr1.3:46657585-46657604 MS.gene24590:CDS 40.0%
!! CAGAAGGAGCATTAGGTTTA+GGG + chr1.3:46655941-46655960 None:intergenic 40.0%
!! TGGTTCTGGTTCAAACTCTA+TGG - chr1.3:46657536-46657555 MS.gene24590:intron 40.0%
ACTAAACCCACCAAGTGAAG+TGG + chr1.3:46655892-46655911 None:intergenic 45.0%
AGAAATCTTCCAGGAACACC+AGG - chr1.3:46655975-46655994 MS.gene24590:CDS 45.0%
AGAAGAGCAGTAGCTGACAT+TGG + chr1.3:46657252-46657271 None:intergenic 45.0%
AGATCACCAAGTGCTCTTGA+AGG + chr1.3:46656317-46656336 None:intergenic 45.0%
ATTATGCACCATGGTGGTTC+TGG - chr1.3:46657510-46657529 MS.gene24590:intron 45.0%
CACTATCCACTTCACTTGGT+GGG - chr1.3:46655883-46655902 MS.gene24590:CDS 45.0%
CTATCAAAGCCTGCTTCTTC+CGG - chr1.3:46657204-46657223 MS.gene24590:CDS 45.0%
GATAGTGAAAAAGGGTCACC+AGG + chr1.3:46655870-46655889 None:intergenic 45.0%
GATCACCAAGTGCTCTTGAA+GGG + chr1.3:46656316-46656335 None:intergenic 45.0%
GATCTCTGTCTTAGCTTCCA+TGG + chr1.3:46656230-46656249 None:intergenic 45.0%
GGACCACAAAGTGATCAACA+AGG - chr1.3:46657477-46657496 MS.gene24590:intron 45.0%
GTCCCATTTCATGATTCCCT+TGG + chr1.3:46657029-46657048 None:intergenic 45.0%
TCACTATCCACTTCACTTGG+TGG - chr1.3:46655882-46655901 MS.gene24590:CDS 45.0%
TCTGTCTTAGCTTCCATGGA+AGG + chr1.3:46656226-46656245 None:intergenic 45.0%
! GAAAGCACGGTGAAAAGAAG+TGG - chr1.3:46656363-46656382 MS.gene24590:CDS 45.0%
! GGAGCATTAGGTTTAGGGTT+AGG + chr1.3:46655936-46655955 None:intergenic 45.0%
!! GATTTTCTTGGTGTGAGTGG+TGG - chr1.3:46657588-46657607 MS.gene24590:CDS 45.0%
AACCAGAACCAGAACCACCA+TGG + chr1.3:46657521-46657540 None:intergenic 50.0%
AGAGCAATAACCTCGGCATC+TGG + chr1.3:46656101-46656120 None:intergenic 50.0%
CAAGTGCTCTTGAAGGGTCA+TGG + chr1.3:46656310-46656329 None:intergenic 50.0%
CTATACAGATCCAGATGCCG+AGG - chr1.3:46656088-46656107 MS.gene24590:CDS 50.0%
CTCTTCTTCTTGGGGACAGA+AGG + chr1.3:46655957-46655976 None:intergenic 50.0%
GAAGAGGTCACAACCTTCCA+TGG - chr1.3:46656210-46656229 MS.gene24590:CDS 50.0%
GTAACAGAACCGGAAGAAGC+AGG + chr1.3:46657216-46657235 None:intergenic 50.0%
! AGAGCACTTGGTGATCTCAC+AGG - chr1.3:46656320-46656339 MS.gene24590:CDS 50.0%
! TGGTGGACACAAGTCTTCTC+TGG + chr1.3:46656290-46656309 None:intergenic 50.0%
! TTTCTTGGTGTGAGTGGTGG+AGG - chr1.3:46657591-46657610 MS.gene24590:CDS 50.0%
!! CATGACCCTTCAAGAGCACT+TGG - chr1.3:46656308-46656327 MS.gene24590:CDS 50.0%
!! TTGGGGACAGAAGGAGCATT+AGG + chr1.3:46655948-46655967 None:intergenic 50.0%
ACTGTGGCACCCTCTTCTCA+AGG - chr1.3:46656474-46656493 MS.gene24590:CDS 55.0%
GTGCTCTTGAAGGGTCATGG+TGG + chr1.3:46656307-46656326 None:intergenic 55.0%
! GTGAGTGGTGGAGGAAGAAC+TGG - chr1.3:46657600-46657619 MS.gene24590:CDS 55.0%
!! CACCATGGTGGTTCTGGTTC+TGG - chr1.3:46657516-46657535 MS.gene24590:intron 55.0%
!! GGTGGTTCTGGTTCTGGTTC+TGG - chr1.3:46657522-46657541 MS.gene24590:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 46655855 46657692 46655855 ID=MS.gene24590
chr1.3 mRNA 46655855 46657692 46655855 ID=MS.gene24590.t1;Parent=MS.gene24590
chr1.3 exon 46657551 46657692 46657551 ID=MS.gene24590.t1.exon1;Parent=MS.gene24590.t1
chr1.3 CDS 46657551 46657692 46657551 ID=cds.MS.gene24590.t1;Parent=MS.gene24590.t1
chr1.3 exon 46657052 46657451 46657052 ID=MS.gene24590.t1.exon2;Parent=MS.gene24590.t1
chr1.3 CDS 46657052 46657451 46657052 ID=cds.MS.gene24590.t1;Parent=MS.gene24590.t1
chr1.3 exon 46655855 46656812 46655855 ID=MS.gene24590.t1.exon3;Parent=MS.gene24590.t1
chr1.3 CDS 46655855 46656812 46655855 ID=cds.MS.gene24590.t1;Parent=MS.gene24590.t1
Gene Sequence

>MS.gene24590

ATGCAAATGATTCCTGGTGACCCTTTTTCACTATCCACTTCACTTGGTGGGTTTAGTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTTCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGGTATATTCATTCATGATTACAGAAATTTTTGTATGATTTTCAATTTGTTACTTTTTCATATATTTCAAATTGGTAATGGAAATTAATTTGACTATACAGATCCAGATGCCGAGGTTATTGCTCTATCACCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGGTTCCAAAGAGATCAAAACCTTCAACTACATAGAAGAGGTCACAACCTTCCATGGAAGCTAAGACAGAGATCCAACAAAGATGTTATTAAGAAAAAAGTTTACATCTGTCCAGAGAAGACTTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGATCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAAAAGAAGTGGAAATGTGAAAAATGTTCCAAAAAATATGCAGTCCAATCTGATTGGAAAGCTCATACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGTATAATATTTAATATACTCTCCTTTTATTCACCAATCTTTTGTTTCTGTGATAAATCAATAAATGCTTCTTTAATTTATTCATATTCATATTTGTGACATGTACGAGGTTTTTCCAATCATGTATGTTGTGTTAGGTTTTGAATTTAATGCTTTCTTTAATGGATTATATTTTTATGTGTCTGGTTTTAAGTTTTAATTAAGTTTTAATGTCTGTTTTTTTGTTGATATTTTGAACAGAAAGGATAGTTTCATTACACACAGAGCTTTTTGTGATGCATTGGCAGAAGAGAGTGCAAGAGTAACTTCAGTTACAACAACAAATCTAAATTTTAAGAATGAAGAAGGTAGTGCTATGATGAATCCACATTCACAACATGGTTTATCACATGGAATACTTCAAAATATTGGTGGAATTCCACATCCACAATTTGGTTCACATGGATATCATCAAGTAGATTTCAATGGAATTGGAAACAACAACTCTATGATTATGGAGCAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAATCATGAAATGGGACAAAGTTCTAATTCCCTTTTTGGTTCTTCTGGTTTATCTGAGATAGTTCAAATGGGAAATGCTACTACTAATAATAATAATGCCTTGATTTGTTCTTCTTCATCATCAATGTTTGGTGTACCTGCTTCAAATTCAACATCTGCTGCAAATCTTTCTCTATCAAAGCCTGCTTCTTCCGGTTCTGTTACTGTTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCAATACTAGTAATGATAATAATAACAACCCTTCCATTTTTAGTTCTAGTTTTGGTGTAATGACATCACCTTCTTCTTCTACTAGTTCAGCTATGTTGGGAAATAGTAGTGCAGGTGCAGCTGCTAATGCTAATTATAGCTCAAATAGTAGTTTTGATCAGTTTTTCATGCATGGACCACAAAGTGATCAACAAGGAAAATTGAATATTATGCACCATGGTGGTTCTGGTTCTGGTTCTGGTTCAAACTCTATGGATCAAGTACAACATAGTAATTTGACAAGAGATTTTCTTGGTGTGAGTGGTGGAGGAAGAACTGGTCCACATCAGTTTCTACCTCAAGAGATAGCAAAATTTGCTTCTTCCATTCAATTCACAGGTAATCAGTGA
Protein sequence

>MS.gene24590.t1

MQMIPGDPFSLSTSLGGFSTQEQNTNPNPKPNAPSVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTSVTTTNLNFKNEEGSAMMNPHSQHGLSHGILQNIGGIPHPQFGSHGYHQVDFNGIGNNNSMIMEQQRPSLSLWLNQGNHEMGQSSNSLFGSSGLSEIVQMGNATTNNNNALICSSSSSMFGVPASNSTSAANLSLSKPASSGSVTVSATPMSATALLQKAAQMGSTRSNTSNDNNNNPSIFSSSFGVMTSPSSSTSSAMLGNSSAGAAANANYSSNSSFDQFFMHGPQSDQQGKLNIMHHGGSGSGSGSNSMDQVQHSNLTRDFLGVSGGGRTGPHQFLPQEIAKFASSIQFTGNQ