Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24599.t1 | XP_013468199.1 | 94.6 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 2.60E-58 | 234.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24599.t1 | I3S5D8 | 94.6 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 1.9e-58 | 234.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene24599 | 0.806737 | 7.11E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene24599 | 0.808701 | 2.72E-50 | -1.69E-46 |
| MS.gene050959 | MS.gene24599 | 0.810165 | 1.32E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene24599 | 0.822256 | 2.61E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene24599 | 0.819387 | 1.19E-52 | -1.69E-46 |
| MS.gene053221 | MS.gene24599 | 0.813465 | 2.52E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene24599 | 0.800389 | 1.48E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24599.t1 | MTR_1g064490 | 94.574 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 7.87e-87 | 249 |
| MS.gene24599.t1 | MTR_1g064490 | 92.500 | 80 | 6 | 0 | 1 | 80 | 1 | 80 | 8.54e-50 | 154 |
| MS.gene24599.t1 | MTR_1g064490 | 82.500 | 80 | 6 | 1 | 1 | 80 | 1 | 72 | 1.56e-40 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24599.t1 | AT2G37195 | 52.294 | 109 | 51 | 1 | 21 | 129 | 32 | 139 | 3.70e-34 | 116 |
| MS.gene24599.t1 | AT2G37195 | 52.294 | 109 | 51 | 1 | 21 | 129 | 22 | 129 | 3.72e-34 | 115 |
Find 30 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTTTATTTCAGACTTT+GGG | 0.230009 | 1.3:-46481162 | MS.gene24599:CDS |
| TTTGTAGTATTGCAAATTTA+TGG | 0.242937 | 1.3:+46479591 | None:intergenic |
| GTTAATACCAGGAGCATCTT+TGG | 0.296511 | 1.3:+46479613 | None:intergenic |
| ACAGTTTGATATTGCTAATA+GGG | 0.305827 | 1.3:-46480028 | MS.gene24599:CDS |
| GACAGTTTGATATTGCTAAT+AGG | 0.308680 | 1.3:-46480029 | MS.gene24599:CDS |
| AAGATCAACGTTAGTGGGTT+TGG | 0.327165 | 1.3:-46481207 | MS.gene24599:CDS |
| TAGGGTGAATGGGTGCTTAA+AGG | 0.333923 | 1.3:-46479953 | MS.gene24599:CDS |
| TTGCTGTTTATTTCAGACTT+TGG | 0.349606 | 1.3:-46481163 | MS.gene24599:CDS |
| GAAAAGAAGATCAACGTTAG+TGG | 0.411060 | 1.3:-46481213 | MS.gene24599:CDS |
| AAGGAGGTGGATAGGGTGAA+TGG | 0.422556 | 1.3:-46479964 | MS.gene24599:CDS |
| GTATGATAAGGAGGTGGATA+GGG | 0.427663 | 1.3:-46479971 | MS.gene24599:CDS |
| TAAATTTGCAATACTACAAA+AGG | 0.456708 | 1.3:-46479588 | MS.gene24599:intron |
| AGTATGATAAGGAGGTGGAT+AGG | 0.469594 | 1.3:-46479972 | MS.gene24599:CDS |
| GAATGCAATCTTACTTGAAA+GGG | 0.497392 | 1.3:-46479198 | MS.gene24599:CDS |
| GTGGAGGCTAAAGTATGATA+AGG | 0.498733 | 1.3:-46479983 | MS.gene24599:CDS |
| AGAATGCAATCTTACTTGAA+AGG | 0.506970 | 1.3:-46479199 | MS.gene24599:CDS |
| TCGATGATTCTGAGCTCATA+AGG | 0.511176 | 1.3:-46481118 | MS.gene24599:intron |
| AGGAGGTGGATAGGGTGAAT+GGG | 0.514681 | 1.3:-46479963 | MS.gene24599:CDS |
| AAAAGAAGATCAACGTTAGT+GGG | 0.526220 | 1.3:-46481212 | MS.gene24599:CDS |
| TGCAATCTTACTTGAAAGGG+TGG | 0.548429 | 1.3:-46479195 | MS.gene24599:CDS |
| CAGATAGCCAAAGATGCTCC+TGG | 0.550020 | 1.3:-46479620 | MS.gene24599:CDS |
| TATTGCTAATAGGGAGGCAA+TGG | 0.551574 | 1.3:-46480019 | MS.gene24599:CDS |
| GCTAAAGTATGATAAGGAGG+TGG | 0.572359 | 1.3:-46479977 | MS.gene24599:CDS |
| GAGGCTAAAGTATGATAAGG+AGG | 0.580238 | 1.3:-46479980 | MS.gene24599:CDS |
| GCAAATTTATGGTTAATACC+AGG | 0.588657 | 1.3:+46479602 | None:intergenic |
| ATTAAAACGACAGCTTGAAG+AGG | 0.605851 | 1.3:-46479168 | MS.gene24599:CDS |
| GTTTGATATTGCTAATAGGG+AGG | 0.640077 | 1.3:-46480025 | MS.gene24599:CDS |
| GTGCTTAAAGGAACTTCAAG+TGG | 0.655527 | 1.3:-46479941 | MS.gene24599:intron |
| TGGATGAATCTGCTGAGTGG+AGG | 0.660472 | 1.3:-46479999 | MS.gene24599:CDS |
| CAATGGATGAATCTGCTGAG+TGG | 0.681919 | 1.3:-46480002 | MS.gene24599:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTAATTTTTAAAATTT+GGG | + | chr1.3:46480977-46480996 | None:intergenic | 0.0% |
| !!! | AATATTTTTTTTTTTTTTTT+TGG | - | chr1.3:46479912-46479931 | MS.gene24599:intron | 0.0% |
| !!! | TAAATTTAATTTTTAAAATT+TGG | + | chr1.3:46480978-46480997 | None:intergenic | 0.0% |
| !! | AGAAAAACACATAATATTAA+AGG | + | chr1.3:46479985-46480004 | None:intergenic | 15.0% |
| !! | GAAAAACACATAATATTAAA+GGG | + | chr1.3:46479984-46480003 | None:intergenic | 15.0% |
| !!! | TTGAATTTAACTAGATTTTT+CGG | + | chr1.3:46479568-46479587 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTGGAGA+GGG | - | chr1.3:46479918-46479937 | MS.gene24599:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGGAG+AGG | - | chr1.3:46479917-46479936 | MS.gene24599:intron | 15.0% |
| !! | AACAAGGATAAAATTGTTAA+AGG | - | chr1.3:46480888-46480907 | MS.gene24599:intron | 20.0% |
| !! | TAAATTTGCAATACTACAAA+AGG | - | chr1.3:46480778-46480797 | MS.gene24599:intron | 20.0% |
| !! | TATTTGTACCAAGATAAAAT+TGG | - | chr1.3:46480598-46480617 | MS.gene24599:intron | 20.0% |
| !! | TGAGTATTTATATATCTTGT+TGG | - | chr1.3:46480010-46480029 | MS.gene24599:CDS | 20.0% |
| !! | TTATAATCTATAGTAAACGA+TGG | + | chr1.3:46480281-46480300 | None:intergenic | 20.0% |
| !! | TTTGTAGTATTGCAAATTTA+TGG | + | chr1.3:46480778-46480797 | None:intergenic | 20.0% |
| !!! | AATTATTTTTGGCATTCTTT+TGG | - | chr1.3:46481081-46481100 | MS.gene24599:intron | 20.0% |
| !!! | AATTTTCTTAAATTAGTCAC+TGG | - | chr1.3:46480173-46480192 | MS.gene24599:intron | 20.0% |
| !!! | ACATTTAGAACTTATTTTGA+TGG | - | chr1.3:46479881-46479900 | MS.gene24599:intron | 20.0% |
| !!! | AGTTCTAAATGTAATCAAAA+TGG | + | chr1.3:46479873-46479892 | None:intergenic | 20.0% |
| !!! | ATTTAGAACTTGATTTTGTT+AGG | - | chr1.3:46479844-46479863 | MS.gene24599:intron | 20.0% |
| !!! | ATTTTCTACCATTTTGATTT+TGG | - | chr1.3:46481054-46481073 | MS.gene24599:intron | 20.0% |
| !!! | ATTTTGGTGGAAATTATTTT+TGG | - | chr1.3:46481070-46481089 | MS.gene24599:intron | 20.0% |
| !!! | CATTTAGAACTTATTTTGAT+GGG | - | chr1.3:46479882-46479901 | MS.gene24599:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTGGAGAG+GGG | - | chr1.3:46479919-46479938 | MS.gene24599:intron | 20.0% |
| ! | AAAATTAACAGTTCATAGTG+TGG | + | chr1.3:46480918-46480937 | None:intergenic | 25.0% |
| ! | AATTTCCACCAAAATCAAAA+TGG | + | chr1.3:46481065-46481084 | None:intergenic | 25.0% |
| ! | ACAATATTAGGTCACTTAAA+TGG | + | chr1.3:46479757-46479776 | None:intergenic | 25.0% |
| ! | ACAGTTTGATATTGCTAATA+GGG | - | chr1.3:46480338-46480357 | MS.gene24599:intron | 25.0% |
| ! | AGATTGTGAATTTGTGATTA+AGG | + | chr1.3:46480559-46480578 | None:intergenic | 25.0% |
| ! | ATGATTTCAGCATAAAGATA+TGG | + | chr1.3:46479346-46479365 | None:intergenic | 25.0% |
| ! | GATTATAATATAACGATGCT+TGG | - | chr1.3:46480293-46480312 | MS.gene24599:intron | 25.0% |
| ! | TGATTTCAGCATAAAGATAT+GGG | + | chr1.3:46479345-46479364 | None:intergenic | 25.0% |
| !! | AAGTTTCGTTTTATGATTGA+TGG | - | chr1.3:46479410-46479429 | MS.gene24599:intron | 25.0% |
| !! | AGTTTCGTTTTATGATTGAT+GGG | - | chr1.3:46479411-46479430 | MS.gene24599:intron | 25.0% |
| !! | ATCATGTACCAATTTTATCT+TGG | + | chr1.3:46480609-46480628 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTTGGAGAGG+GGG | - | chr1.3:46479920-46479939 | MS.gene24599:intron | 25.0% |
| AAAAGAAGATCAACGTTAGT+GGG | - | chr1.3:46479154-46479173 | MS.gene24599:CDS | 30.0% | |
| AAATGTAATCAAGATGAACG+AGG | + | chr1.3:46479828-46479847 | None:intergenic | 30.0% | |
| AAATTCACAATCTGTGTGAA+TGG | - | chr1.3:46480566-46480585 | MS.gene24599:intron | 30.0% | |
| AATGTAATCAAGATGAACGA+GGG | + | chr1.3:46479827-46479846 | None:intergenic | 30.0% | |
| AATTCACAATCTGTGTGAAT+GGG | - | chr1.3:46480567-46480586 | MS.gene24599:intron | 30.0% | |
| AGAATGCAATCTTACTTGAA+AGG | - | chr1.3:46481167-46481186 | MS.gene24599:CDS | 30.0% | |
| AGTGTTACATTCATAGACTA+AGG | + | chr1.3:46479482-46479501 | None:intergenic | 30.0% | |
| ATACATGTTAGTGTTCTGTT+CGG | - | chr1.3:46480196-46480215 | MS.gene24599:intron | 30.0% | |
| ATGTTGTTAATCTCAGATAG+TGG | + | chr1.3:46480137-46480156 | None:intergenic | 30.0% | |
| CGTGTTTGATTGTTTGATTA+TGG | - | chr1.3:46479783-46479802 | MS.gene24599:intron | 30.0% | |
| GAATGCAATCTTACTTGAAA+GGG | - | chr1.3:46481168-46481187 | MS.gene24599:CDS | 30.0% | |
| GACAGTTTGATATTGCTAAT+AGG | - | chr1.3:46480337-46480356 | MS.gene24599:intron | 30.0% | |
| GCAAATTTATGGTTAATACC+AGG | + | chr1.3:46480767-46480786 | None:intergenic | 30.0% | |
| GTTCAAGTATTATACCATTG+TGG | - | chr1.3:46480509-46480528 | MS.gene24599:intron | 30.0% | |
| TAATCAAACAATCAAACACG+AGG | + | chr1.3:46479783-46479802 | None:intergenic | 30.0% | |
| TTGTGAATTTGTGATTAAGG+CGG | + | chr1.3:46480556-46480575 | None:intergenic | 30.0% | |
| ! | AGATTTTACAGGAAAGACAA+AGG | + | chr1.3:46480699-46480718 | None:intergenic | 30.0% |
| ! | ATTTGGGACTGATTATAAGT+TGG | + | chr1.3:46480961-46480980 | None:intergenic | 30.0% |
| ! | ATTTTACAGGAAAGACAAAG+GGG | + | chr1.3:46480697-46480716 | None:intergenic | 30.0% |
| ! | GATTTTACAGGAAAGACAAA+GGG | + | chr1.3:46480698-46480717 | None:intergenic | 30.0% |
| ! | TGCTGTTTATTTCAGACTTT+GGG | - | chr1.3:46479204-46479223 | MS.gene24599:intron | 30.0% |
| ! | TTCCTGTAAAATCTTTTGTG+TGG | - | chr1.3:46480705-46480724 | MS.gene24599:intron | 30.0% |
| !! | TTGCTGTTTATTTCAGACTT+TGG | - | chr1.3:46479203-46479222 | MS.gene24599:CDS | 30.0% |
| !! | TTGGCTTTTCTAATGTTCAT+GGG | - | chr1.3:46479178-46479197 | MS.gene24599:CDS | 30.0% |
| !!! | TTCTACCATTTTGATTTTGG+TGG | - | chr1.3:46481057-46481076 | MS.gene24599:intron | 30.0% |
| !!! | TTTGGCTTTTCTAATGTTCA+TGG | - | chr1.3:46479177-46479196 | MS.gene24599:CDS | 30.0% |
| AACACGAGGCTTACAATATT+AGG | + | chr1.3:46479769-46479788 | None:intergenic | 35.0% | |
| ACACTGACATTTCAGATTGA+AGG | - | chr1.3:46479497-46479516 | MS.gene24599:intron | 35.0% | |
| ATCGTGTCAGTATCAAACAA+AGG | + | chr1.3:46479544-46479563 | None:intergenic | 35.0% | |
| ATGAATAGTGGTAGAAAAGC+AGG | - | chr1.3:46479705-46479724 | MS.gene24599:intron | 35.0% | |
| ATTAAAACGACAGCTTGAAG+AGG | - | chr1.3:46481198-46481217 | MS.gene24599:CDS | 35.0% | |
| ATTCACAATCTGTGTGAATG+GGG | - | chr1.3:46480568-46480587 | MS.gene24599:intron | 35.0% | |
| CAAATCAAATGTTGCAGAAG+AGG | + | chr1.3:46479280-46479299 | None:intergenic | 35.0% | |
| CTACTCTTAAAGATGCTTTG+CGG | + | chr1.3:46479666-46479685 | None:intergenic | 35.0% | |
| CTCCTGGAATATAAAGTTGA+AGG | + | chr1.3:46481149-46481168 | None:intergenic | 35.0% | |
| CTTAAATGGTTAAACCGCTA+CGG | + | chr1.3:46479743-46479762 | None:intergenic | 35.0% | |
| GAAAAGAAGATCAACGTTAG+TGG | - | chr1.3:46479153-46479172 | MS.gene24599:CDS | 35.0% | |
| GACCTTCAACTTTATATTCC+AGG | - | chr1.3:46481144-46481163 | MS.gene24599:CDS | 35.0% | |
| GTGAATGACTAGAAAGGTTA+AGG | - | chr1.3:46480487-46480506 | MS.gene24599:intron | 35.0% | |
| GTTTGATATTGCTAATAGGG+AGG | - | chr1.3:46480341-46480360 | MS.gene24599:intron | 35.0% | |
| TACTCTATGAATCACAGACA+CGG | + | chr1.3:46480243-46480262 | None:intergenic | 35.0% | |
| TACTCTTAAAGATGCTTTGC+GGG | + | chr1.3:46479665-46479684 | None:intergenic | 35.0% | |
| TCCAAAGTGAATGACTAGAA+AGG | - | chr1.3:46480481-46480500 | MS.gene24599:intron | 35.0% | |
| TGAATAGTGGTAGAAAAGCA+GGG | - | chr1.3:46479706-46479725 | MS.gene24599:intron | 35.0% | |
| TTAAGAGTAGTGTGTGTTAG+CGG | - | chr1.3:46479676-46479695 | MS.gene24599:intron | 35.0% | |
| TTCTAGTCATTCACTTTGGA+AGG | + | chr1.3:46480481-46480500 | None:intergenic | 35.0% | |
| ! | ACCTTTCTAGTCATTCACTT+TGG | + | chr1.3:46480485-46480504 | None:intergenic | 35.0% |
| ! | TGCCACACAAAAGATTTTAC+AGG | + | chr1.3:46480710-46480729 | None:intergenic | 35.0% |
| ! | TTATCCTTGTTTCCCTAAGA+TGG | + | chr1.3:46480879-46480898 | None:intergenic | 35.0% |
| !! | ATTGACTTGAGCAAAATCAG+CGG | + | chr1.3:46481010-46481029 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTCTTTTGGCA+TGG | - | chr1.3:46481086-46481105 | MS.gene24599:intron | 35.0% |
| AATTTGTGATTAAGGCGGCT+AGG | + | chr1.3:46480551-46480570 | None:intergenic | 40.0% | |
| AGTATGATAAGGAGGTGGAT+AGG | - | chr1.3:46480394-46480413 | MS.gene24599:intron | 40.0% | |
| CAAGTAAGATTGCATTCTCC+TGG | + | chr1.3:46481165-46481184 | None:intergenic | 40.0% | |
| GAGGCTAAAGTATGATAAGG+AGG | - | chr1.3:46480386-46480405 | MS.gene24599:intron | 40.0% | |
| GCTAAAGTATGATAAGGAGG+TGG | - | chr1.3:46480389-46480408 | MS.gene24599:intron | 40.0% | |
| GTATGATAAGGAGGTGGATA+GGG | - | chr1.3:46480395-46480414 | MS.gene24599:intron | 40.0% | |
| GTCTCCTACATATAGTTGAG+TGG | + | chr1.3:46480320-46480339 | None:intergenic | 40.0% | |
| GTGCTTAAAGGAACTTCAAG+TGG | - | chr1.3:46480425-46480444 | MS.gene24599:intron | 40.0% | |
| GTGGAGGCTAAAGTATGATA+AGG | - | chr1.3:46480383-46480402 | MS.gene24599:intron | 40.0% | |
| TATTGCTAATAGGGAGGCAA+TGG | - | chr1.3:46480347-46480366 | MS.gene24599:intron | 40.0% | |
| TCAGTATCAAACAAAGGCAG+TGG | + | chr1.3:46479538-46479557 | None:intergenic | 40.0% | |
| TCGATGATTCTGAGCTCATA+AGG | - | chr1.3:46479248-46479267 | MS.gene24599:intron | 40.0% | |
| TCTATTCCCTAGCCATCTTA+GGG | - | chr1.3:46480864-46480883 | MS.gene24599:intron | 40.0% | |
| TGCAATCTTACTTGAAAGGG+TGG | - | chr1.3:46481171-46481190 | MS.gene24599:CDS | 40.0% | |
| TGGTCCACTCAACTATATGT+AGG | - | chr1.3:46480313-46480332 | MS.gene24599:intron | 40.0% | |
| TTCTATTCCCTAGCCATCTT+AGG | - | chr1.3:46480863-46480882 | MS.gene24599:intron | 40.0% | |
| TTGTTTCCCTAAGATGGCTA+GGG | + | chr1.3:46480873-46480892 | None:intergenic | 40.0% | |
| TTTCAGATTGAAGGTCTGTC+TGG | - | chr1.3:46479506-46479525 | MS.gene24599:intron | 40.0% | |
| ! | TATACCGCTAGAGCATCTTT+GGG | - | chr1.3:46480096-46480115 | MS.gene24599:intron | 40.0% |
| ! | TGAAGTACTACGAACCACAA+TGG | + | chr1.3:46480526-46480545 | None:intergenic | 40.0% |
| ! | TTGACTTGAGCAAAATCAGC+GGG | + | chr1.3:46481009-46481028 | None:intergenic | 40.0% |
| !! | AAGATCAACGTTAGTGGGTT+TGG | - | chr1.3:46479159-46479178 | MS.gene24599:CDS | 40.0% |
| !! | GTTAATACCAGGAGCATCTT+TGG | + | chr1.3:46480756-46480775 | None:intergenic | 40.0% |
| AAGATGCTCTAGCGGTATAG+CGG | + | chr1.3:46480095-46480114 | None:intergenic | 45.0% | |
| ACTACACTACACCGCAATAG+CGG | + | chr1.3:46479620-46479639 | None:intergenic | 45.0% | |
| CAATGGATGAATCTGCTGAG+TGG | - | chr1.3:46480364-46480383 | MS.gene24599:intron | 45.0% | |
| CTAGCCATCTTAGGGAAACA+AGG | - | chr1.3:46480872-46480891 | MS.gene24599:intron | 45.0% | |
| CTTGTTTCCCTAAGATGGCT+AGG | + | chr1.3:46480874-46480893 | None:intergenic | 45.0% | |
| GTATCAAACAAAGGCAGTGG+TGG | + | chr1.3:46479535-46479554 | None:intergenic | 45.0% | |
| TAGCGGTTGCGAATGAATAG+TGG | - | chr1.3:46479693-46479712 | MS.gene24599:intron | 45.0% | |
| TAGGGTGAATGGGTGCTTAA+AGG | - | chr1.3:46480413-46480432 | MS.gene24599:intron | 45.0% | |
| ! | ATACCGCTAGAGCATCTTTG+GGG | - | chr1.3:46480097-46480116 | MS.gene24599:intron | 45.0% |
| ! | CTATACCGCTAGAGCATCTT+TGG | - | chr1.3:46480095-46480114 | MS.gene24599:intron | 45.0% |
| ! | TTGAGCAAAATCAGCGGGTT+CGG | + | chr1.3:46481004-46481023 | None:intergenic | 45.0% |
| AAGGAGGTGGATAGGGTGAA+TGG | - | chr1.3:46480402-46480421 | MS.gene24599:intron | 50.0% | |
| AGGAGGTGGATAGGGTGAAT+GGG | - | chr1.3:46480403-46480422 | MS.gene24599:intron | 50.0% | |
| ATGGTTAAACCGCTACGGCA+TGG | + | chr1.3:46479738-46479757 | None:intergenic | 50.0% | |
| CAGATAGCCAAAGATGCTCC+TGG | - | chr1.3:46480746-46480765 | MS.gene24599:intron | 50.0% | |
| TGGATGAATCTGCTGAGTGG+AGG | - | chr1.3:46480367-46480386 | MS.gene24599:intron | 50.0% | |
| ! | GAGGGCATGATGAAAGAGAG+CGG | + | chr1.3:46479809-46479828 | None:intergenic | 50.0% |
| ! | GCACTATAGTGCCGCTATTG+CGG | - | chr1.3:46479606-46479625 | MS.gene24599:CDS | 50.0% |
| ! | TACCGCTAGAGCATCTTTGG+GGG | - | chr1.3:46480098-46480117 | MS.gene24599:intron | 50.0% |
| !! | GGTATAGCGGATAGCAGGAT+GGG | + | chr1.3:46480082-46480101 | None:intergenic | 50.0% |
| GACCCCCAAAGATGCTCTAG+CGG | + | chr1.3:46480103-46480122 | None:intergenic | 55.0% | |
| TGTCCCCACTGTCACAGCAT+AGG | - | chr1.3:46479639-46479658 | MS.gene24599:intron | 55.0% | |
| !! | CGGTATAGCGGATAGCAGGA+TGG | + | chr1.3:46480083-46480102 | None:intergenic | 55.0% |
| !! | CTAGCGGTATAGCGGATAGC+AGG | + | chr1.3:46480087-46480106 | None:intergenic | 55.0% |
| !! | TTCGGTGTCAGTGTCCTGTG+TGG | - | chr1.3:46480214-46480233 | MS.gene24599:intron | 55.0% |
| CACAGACACGGACACCACAC+AGG | + | chr1.3:46480231-46480250 | None:intergenic | 60.0% | |
| CGGGCCTATGCTGTGACAGT+GGG | + | chr1.3:46479646-46479665 | None:intergenic | 60.0% | |
| GGGCAATTGCCATGCCGTAG+CGG | - | chr1.3:46479726-46479745 | MS.gene24599:intron | 60.0% | |
| GGGCCTATGCTGTGACAGTG+GGG | + | chr1.3:46479645-46479664 | None:intergenic | 60.0% | |
| GCGGGCCTATGCTGTGACAG+TGG | + | chr1.3:46479647-46479666 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46479142 | 46481246 | 46479142 | ID=MS.gene24599 |
| chr1.3 | mRNA | 46479142 | 46481246 | 46479142 | ID=MS.gene24599.t1;Parent=MS.gene24599 |
| chr1.3 | exon | 46481119 | 46481246 | 46481119 | ID=MS.gene24599.t1.exon1;Parent=MS.gene24599.t1 |
| chr1.3 | CDS | 46481119 | 46481246 | 46481119 | ID=cds.MS.gene24599.t1;Parent=MS.gene24599.t1 |
| chr1.3 | exon | 46479942 | 46480053 | 46479942 | ID=MS.gene24599.t1.exon2;Parent=MS.gene24599.t1 |
| chr1.3 | CDS | 46479942 | 46480053 | 46479942 | ID=cds.MS.gene24599.t1;Parent=MS.gene24599.t1 |
| chr1.3 | exon | 46479589 | 46479657 | 46479589 | ID=MS.gene24599.t1.exon3;Parent=MS.gene24599.t1 |
| chr1.3 | CDS | 46479589 | 46479657 | 46479589 | ID=cds.MS.gene24599.t1;Parent=MS.gene24599.t1 |
| chr1.3 | exon | 46479142 | 46479222 | 46479142 | ID=MS.gene24599.t1.exon4;Parent=MS.gene24599.t1 |
| chr1.3 | CDS | 46479142 | 46479222 | 46479142 | ID=cds.MS.gene24599.t1;Parent=MS.gene24599.t1 |
| Gene Sequence |
| Protein sequence |
