Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052613.t1 | GAU35956.1 | 93.3 | 60 | 4 | 0 | 1 | 60 | 308 | 367 | 2.30E-25 | 124 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052613.t1 | Q5XF07 | 70.0 | 60 | 18 | 0 | 1 | 60 | 303 | 362 | 4.3e-20 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052613.t1 | A0A2Z6MV94 | 93.3 | 60 | 4 | 0 | 1 | 60 | 308 | 367 | 1.7e-25 | 124.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050438 | MS.gene052613 | 0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene050787 | MS.gene052613 | 0.802458 | 5.56E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene052613 | 0.822775 | 1.98E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene052863 | 0.82127 | 4.41E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene052896 | 0.810474 | 1.13E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene053221 | 0.806992 | 6.28E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene055357 | 0.821532 | 3.84E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene055358 | 0.807188 | 5.71E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene055466 | 0.813048 | 3.12E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene058625 | 0.817099 | 3.93E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene05954 | 0.816053 | 6.74E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene061618 | 0.80221 | 6.25E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene062743 | 0.814175 | 1.76E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene062821 | 0.817995 | 2.47E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene064944 | 0.841375 | 4.94E-58 | -1.69E-46 |
| MS.gene052613 | MS.gene065663 | 0.80875 | 2.66E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene065667 | 0.808264 | 3.37E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene066112 | 0.811305 | 7.48E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene06705 | 0.830608 | 2.67E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene067932 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene067974 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene052613 | MS.gene068004 | 0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene052613 | MS.gene069142 | 0.809503 | 1.83E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene06921 | 0.817283 | 3.57E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene06922 | 0.83086 | 2.31E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene07115 | 0.820556 | 6.44E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene072442 | 0.803851 | 2.86E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene072671 | 0.8247 | 7.00E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene074616 | 0.802636 | 5.11E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene074617 | 0.802816 | 4.69E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene07530 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene052613 | MS.gene08365 | 0.842843 | 2.02E-58 | -1.69E-46 |
| MS.gene052613 | MS.gene09091 | 0.808142 | 3.58E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene23006 | 0.809947 | 1.47E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene24599 | 0.822256 | 2.61E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene24741 | 0.812323 | 4.49E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene27571 | 0.804979 | 1.67E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene27573 | 0.811971 | 5.36E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene27903 | 0.825092 | 5.66E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene28658 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene052613 | MS.gene28841 | 0.806446 | 8.20E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene30530 | 0.814432 | 1.55E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene33527 | 0.826623 | 2.45E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene34979 | 0.842947 | 1.89E-58 | -1.69E-46 |
| MS.gene052613 | MS.gene35438 | 0.817521 | 3.16E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene35533 | 0.8121 | 5.02E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene36281 | 0.809478 | 1.85E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene36899 | 0.803482 | 3.41E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene37438 | 0.807891 | 4.05E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene38494 | 0.820604 | 6.28E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene40837 | -0.809257 | 2.07E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene42160 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene42162 | 0.827047 | 1.94E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene43810 | 0.805482 | 1.31E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene43886 | 0.814076 | 1.85E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene44217 | 0.808367 | 3.21E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene45193 | 0.819686 | 1.02E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene45194 | 0.816184 | 6.30E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene45268 | 0.946598 | 3.40E-105 | -1.69E-46 |
| MS.gene052613 | MS.gene45418 | 0.822567 | 2.21E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene45578 | 0.80887 | 2.50E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene45609 | 0.81082 | 9.53E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene46773 | 0.8061 | 9.69E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene47111 | 0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene47338 | 0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene47339 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene47340 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene48577 | 0.812864 | 3.42E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene48701 | 0.833026 | 6.75E-56 | -1.69E-46 |
| MS.gene052613 | MS.gene49003 | 0.818684 | 1.72E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene49665 | 0.80889 | 2.48E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene50990 | 0.839435 | 1.59E-57 | -1.69E-46 |
| MS.gene052613 | MS.gene51240 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene052613 | MS.gene51459 | 0.808523 | 2.97E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene51511 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene53586 | 0.850427 | 1.71E-60 | -1.69E-46 |
| MS.gene052613 | MS.gene54544 | 0.81146 | 6.93E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene55111 | 0.804794 | 1.82E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene55470 | 0.828464 | 8.86E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene55651 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene57486 | 0.812044 | 5.17E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene58375 | 0.813881 | 2.05E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene59838 | 0.819492 | 1.13E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene59840 | 0.805407 | 1.35E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene59876 | 0.806603 | 7.59E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene62214 | 0.81663 | 5.01E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene63327 | 0.816277 | 6.01E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene64249 | 0.839407 | 1.61E-57 | -1.69E-46 |
| MS.gene052613 | MS.gene65271 | 0.806284 | 8.87E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene67746 | 0.825551 | 4.41E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene71704 | 0.812212 | 4.75E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene72121 | 0.802008 | 6.88E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene72123 | 0.805457 | 1.32E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene72203 | 0.803417 | 3.52E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene72268 | 0.850803 | 1.34E-60 | -1.69E-46 |
| MS.gene052613 | MS.gene72811 | 0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene72812 | 0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene74367 | 0.812948 | 3.28E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene74370 | 0.833403 | 5.44E-56 | -1.69E-46 |
| MS.gene052613 | MS.gene74373 | 0.834581 | 2.76E-56 | -1.69E-46 |
| MS.gene052613 | MS.gene74980 | 0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene77588 | 0.801574 | 8.45E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene77781 | 0.818247 | 2.16E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene77785 | 0.826649 | 2.42E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene78337 | 0.806147 | 9.47E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene79202 | 0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene79960 | 0.80787 | 4.09E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene81256 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene81329 | 0.80175 | 7.77E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene82119 | 0.828527 | 8.56E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene83476 | 0.813201 | 2.89E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene84300 | 0.816866 | 4.43E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene84388 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene85604 | 0.818508 | 1.89E-52 | -1.69E-46 |
| MS.gene052613 | MS.gene85606 | 0.83246 | 9.34E-56 | -1.69E-46 |
| MS.gene052613 | MS.gene86086 | 0.80395 | 2.73E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene86678 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene87771 | 0.803669 | 3.12E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene88243 | 0.807335 | 5.32E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene88380 | 0.803987 | 2.68E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene89096 | 0.828937 | 6.81E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene90239 | 0.803918 | 2.77E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene90649 | 0.805969 | 1.03E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene90917 | 0.834292 | 3.26E-56 | -1.69E-46 |
| MS.gene052613 | MS.gene91807 | 0.80972 | 1.65E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene93311 | 0.805071 | 1.59E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene94474 | 0.801854 | 7.40E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene95236 | 0.827236 | 1.75E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene95389 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene96083 | 0.805379 | 1.37E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene96085 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene98717 | 0.806713 | 7.20E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene99766 | 0.805023 | 1.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 11 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTCTCCTCAGGTTTCTA+TGG | 0.325287 | 3.1:-61881009 | MS.gene052613:intron |
| GGAGAGAGCTCCAAGGTAAC+AGG | 0.385509 | 3.1:+61880973 | None:intergenic |
| ACATTAATAAGTACTTATAC+TGG | 0.437619 | 3.1:+61880925 | None:intergenic |
| TTTGAAGGTACCGCGGAAAA+CGG | 0.439053 | 3.1:-61882049 | None:intergenic |
| TGATCATTGTCCTGTTACCT+TGG | 0.459781 | 3.1:-61880983 | MS.gene052613:CDS |
| GCATGTGAAATGCATGGAAA+AGG | 0.488169 | 3.1:-61881975 | MS.gene052613:CDS |
| CATGTGAAATGCATGGAAAA+GGG | 0.549839 | 3.1:-61881974 | MS.gene052613:CDS |
| TAGTTCCAACTCTCAAAATG+AGG | 0.586067 | 3.1:-61880950 | MS.gene052613:CDS |
| ATTGTTGCATGTGAAATGCA+TGG | 0.619220 | 3.1:-61881981 | MS.gene052613:CDS |
| GGAAAAGGGATAGAGTTACA+AGG | 0.646371 | 3.1:-61881960 | MS.gene052613:intron |
| GGAACTAGGAGAGAGCTCCA+AGG | 0.654013 | 3.1:+61880966 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAATTAATTTATTAT+CGG | + | chr3.1:61881281-61881300 | None:intergenic | 0.0% |
| !!! | TTTTAATTTATTTATTTTTT+TGG | + | chr3.1:61881564-61881583 | None:intergenic | 0.0% |
| !! | ATTGAAAATGATAATAACAA+TGG | + | chr3.1:61881912-61881931 | None:intergenic | 15.0% |
| !!! | AAAATTTGATATTCGTTTTT+AGG | - | chr3.1:61881085-61881104 | MS.gene052613:intron | 15.0% |
| !!! | AAATTTGATATTCGTTTTTA+GGG | - | chr3.1:61881086-61881105 | MS.gene052613:intron | 15.0% |
| !!! | ATGATTTATGAAATTTTGAA+TGG | - | chr3.1:61881478-61881497 | MS.gene052613:intron | 15.0% |
| !! | ATAAATCATACATAATCCAT+AGG | + | chr3.1:61881467-61881486 | None:intergenic | 20.0% |
| !! | TTTAAGTAATAAGATGTCTA+AGG | + | chr3.1:61881313-61881332 | None:intergenic | 20.0% |
| !!! | AATTTGATATTCGTTTTTAG+GGG | - | chr3.1:61881087-61881106 | MS.gene052613:intron | 20.0% |
| !!! | GTTTAAAAGTTGAAGTTTTT+TGG | - | chr3.1:61881514-61881533 | MS.gene052613:intron | 20.0% |
| !!! | TTTTAACTTAGATAAGCTAA+AGG | + | chr3.1:61881761-61881780 | None:intergenic | 20.0% |
| ! | ACATCATAAAACATATCCTA+TGG | - | chr3.1:61881448-61881467 | MS.gene052613:intron | 25.0% |
| ! | TACCCATTATTATATGGATA+CGG | - | chr3.1:61881215-61881234 | MS.gene052613:intron | 25.0% |
| ! | TTTGACTACCCATTATTATA+TGG | - | chr3.1:61881209-61881228 | MS.gene052613:intron | 25.0% |
| !! | AATTTTGAATGGATGATGTA+TGG | - | chr3.1:61881489-61881508 | MS.gene052613:intron | 25.0% |
| ATCAATGAAGAATCTTAGGT+GGG | + | chr3.1:61881365-61881384 | None:intergenic | 30.0% | |
| GAACCATATACATAAAAGGA+GGG | + | chr3.1:61881736-61881755 | None:intergenic | 30.0% | |
| GGTTATCAATGAAGAATCTT+AGG | + | chr3.1:61881369-61881388 | None:intergenic | 30.0% | |
| GTCCGTATCCATATAATAAT+GGG | + | chr3.1:61881220-61881239 | None:intergenic | 30.0% | |
| GTTGTATCTAACCTGTTTAA+TGG | - | chr3.1:61881824-61881843 | MS.gene052613:intron | 30.0% | |
| TAACTTAGATAAGCTAAAGG+AGG | + | chr3.1:61881758-61881777 | None:intergenic | 30.0% | |
| TATCAATGAAGAATCTTAGG+TGG | + | chr3.1:61881366-61881385 | None:intergenic | 30.0% | |
| TATCCACGGGTATAATAAAT+GGG | - | chr3.1:61881184-61881203 | MS.gene052613:intron | 30.0% | |
| TGTCCGTATCCATATAATAA+TGG | + | chr3.1:61881221-61881240 | None:intergenic | 30.0% | |
| TTATTATATGGATACGGACA+CGG | - | chr3.1:61881221-61881240 | MS.gene052613:intron | 30.0% | |
| ! | CGGTAAAATTTGCTTCAATA+AGG | + | chr3.1:61881342-61881361 | None:intergenic | 30.0% |
| ! | GTTTTATGATGTGAATGAAG+TGG | + | chr3.1:61881440-61881459 | None:intergenic | 30.0% |
| AAAAAATTCATGGGTACCCT+GGG | - | chr3.1:61881580-61881599 | MS.gene052613:intron | 35.0% | |
| ATAAAAGGAGGGATGTCAAT+GGG | + | chr3.1:61881725-61881744 | None:intergenic | 35.0% | |
| ATACCCATTTATTATACCCG+TGG | + | chr3.1:61881190-61881209 | None:intergenic | 35.0% | |
| ATTGTTGCATGTGAAATGCA+TGG | - | chr3.1:61881000-61881019 | MS.gene052613:intron | 35.0% | |
| CATGTGAAATGCATGGAAAA+GGG | - | chr3.1:61881007-61881026 | MS.gene052613:intron | 35.0% | |
| CGGGTATCATATTTATCCAA+CGG | - | chr3.1:61881661-61881680 | MS.gene052613:intron | 35.0% | |
| GGAACCATATACATAAAAGG+AGG | + | chr3.1:61881737-61881756 | None:intergenic | 35.0% | |
| GGAGGAACCATATACATAAA+AGG | + | chr3.1:61881740-61881759 | None:intergenic | 35.0% | |
| GGGTATCATATTTATCCAAC+GGG | - | chr3.1:61881662-61881681 | MS.gene052613:intron | 35.0% | |
| GGTATCATATTTATCCAACG+GGG | - | chr3.1:61881663-61881682 | MS.gene052613:intron | 35.0% | |
| GTATCCACGGGTATAATAAA+TGG | - | chr3.1:61881183-61881202 | MS.gene052613:intron | 35.0% | |
| TAAAAAATTCATGGGTACCC+TGG | - | chr3.1:61881579-61881598 | MS.gene052613:intron | 35.0% | |
| TAATGGCTACCCCAAAAATT+AGG | - | chr3.1:61881841-61881860 | MS.gene052613:intron | 35.0% | |
| TAGTTCCAACTCTCAAAATG+AGG | - | chr3.1:61882031-61882050 | MS.gene052613:CDS | 35.0% | |
| TGATGTGAATGAAGTGGAAA+CGG | + | chr3.1:61881434-61881453 | None:intergenic | 35.0% | |
| TTTGATTGTACTCATACCCA+CGG | - | chr3.1:61881245-61881264 | MS.gene052613:intron | 35.0% | |
| ! | ACAGCAAAGCCTAATTTTTG+GGG | + | chr3.1:61881853-61881872 | None:intergenic | 35.0% |
| ! | CATCCCTCCTTTTATGTATA+TGG | - | chr3.1:61881730-61881749 | MS.gene052613:intron | 35.0% |
| ! | GACAGCAAAGCCTAATTTTT+GGG | + | chr3.1:61881854-61881873 | None:intergenic | 35.0% |
| ! | TGACAGCAAAGCCTAATTTT+TGG | + | chr3.1:61881855-61881874 | None:intergenic | 35.0% |
| ! | TTCTTTTCGTGTGATGATAC+TGG | - | chr3.1:61881049-61881068 | MS.gene052613:intron | 35.0% |
| !! | TCATTTTGAGAGTTGGAACT+AGG | + | chr3.1:61882032-61882051 | None:intergenic | 35.0% |
| !! | TTGATATTCGTTTTTAGGGG+TGG | - | chr3.1:61881090-61881109 | MS.gene052613:intron | 35.0% |
| !! | TTGTGGTAATTGGTGTTGTT+GGG | - | chr3.1:61881802-61881821 | MS.gene052613:intron | 35.0% |
| !! | TTTGTGGTAATTGGTGTTGT+TGG | - | chr3.1:61881801-61881820 | MS.gene052613:intron | 35.0% |
| !!! | GCTGTCATTTTCATATGCAT+GGG | - | chr3.1:61881868-61881887 | MS.gene052613:intron | 35.0% |
| !!! | TGCTGTCATTTTCATATGCA+TGG | - | chr3.1:61881867-61881886 | MS.gene052613:intron | 35.0% |
| AATGAAGAATCTTAGGTGGG+CGG | + | chr3.1:61881362-61881381 | None:intergenic | 40.0% | |
| ATCACTTCCATAGAAACCTG+AGG | + | chr3.1:61881982-61882001 | None:intergenic | 40.0% | |
| ATCATATTTATCCAACGGGG+CGG | - | chr3.1:61881666-61881685 | MS.gene052613:intron | 40.0% | |
| ATTACCACAAAGTTGCACTC+TGG | + | chr3.1:61881792-61881811 | None:intergenic | 40.0% | |
| CATAAAAGGAGGGATGTCAA+TGG | + | chr3.1:61881726-61881745 | None:intergenic | 40.0% | |
| GAGTGCAACTTTGTGGTAAT+TGG | - | chr3.1:61881792-61881811 | MS.gene052613:intron | 40.0% | |
| GCATGTGAAATGCATGGAAA+AGG | - | chr3.1:61881006-61881025 | MS.gene052613:intron | 40.0% | |
| GGAAAAGGGATAGAGTTACA+AGG | - | chr3.1:61881021-61881040 | MS.gene052613:intron | 40.0% | |
| TGATCATTGTCCTGTTACCT+TGG | - | chr3.1:61881998-61882017 | MS.gene052613:CDS | 40.0% | |
| TTGATTGTACTCATACCCAC+GGG | - | chr3.1:61881246-61881265 | MS.gene052613:intron | 40.0% | |
| !! | TGGATCCTCATTTTGAGAGT+TGG | + | chr3.1:61882039-61882058 | None:intergenic | 40.0% |
| !!! | TTTTGGGGTAGCCATTAAAC+AGG | + | chr3.1:61881838-61881857 | None:intergenic | 40.0% |
| AACCTGAGGAGACAACAACA+AGG | + | chr3.1:61881968-61881987 | None:intergenic | 45.0% | |
| ATCATGCTATCCGTACCCAT+GGG | - | chr3.1:61881697-61881716 | MS.gene052613:intron | 45.0% | |
| GAATCCAGAGTGCAACTTTG+TGG | - | chr3.1:61881785-61881804 | MS.gene052613:intron | 45.0% | |
| GTTGTCTCCTCAGGTTTCTA+TGG | - | chr3.1:61881972-61881991 | MS.gene052613:CDS | 45.0% | |
| TATCATGCTATCCGTACCCA+TGG | - | chr3.1:61881696-61881715 | MS.gene052613:intron | 45.0% | |
| TCATATTTATCCAACGGGGC+GGG | - | chr3.1:61881667-61881686 | MS.gene052613:intron | 45.0% | |
| TCCGTGGGTAAAATCCATCA+CGG | - | chr3.1:61881137-61881156 | MS.gene052613:intron | 45.0% | |
| ! | CTATTCTCATCCGTTTTCCG+CGG | + | chr3.1:61880945-61880964 | None:intergenic | 45.0% |
| !! | AAAAAATTCTAAATAAAAAT+AGG | + | chr3.1:61881390-61881409 | None:intergenic | 5.0% |
| !! | AAATAAATTAAAAAATTCAT+GGG | - | chr3.1:61881571-61881590 | MS.gene052613:intron | 5.0% |
| !! | AATTTAATTAATTTATTATC+GGG | + | chr3.1:61881280-61881299 | None:intergenic | 5.0% |
| !! | TAAATAAATTAAAAAATTCA+TGG | - | chr3.1:61881570-61881589 | MS.gene052613:intron | 5.0% |
| CATATTTATCCAACGGGGCG+GGG | - | chr3.1:61881668-61881687 | MS.gene052613:intron | 50.0% | |
| CCCTCGTGGTATCCACTATA+CGG | + | chr3.1:61881628-61881647 | None:intergenic | 50.0% | |
| CCGTGGGTAAAATCCATCAC+GGG | - | chr3.1:61881138-61881157 | MS.gene052613:intron | 50.0% | |
| CCTCGTGGTATCCACTATAC+GGG | + | chr3.1:61881627-61881646 | None:intergenic | 50.0% | |
| GCAAAAATACCCATGCCCAC+GGG | - | chr3.1:61881112-61881131 | MS.gene052613:intron | 50.0% | |
| GGATGTCAATGGGTACCCAT+GGG | + | chr3.1:61881715-61881734 | None:intergenic | 50.0% | |
| GGCAAAAATACCCATGCCCA+CGG | - | chr3.1:61881111-61881130 | MS.gene052613:intron | 50.0% | |
| GGTAAAATCCATCACGGGCA+CGG | - | chr3.1:61881143-61881162 | MS.gene052613:intron | 50.0% | |
| GGTAGCTAAACGGGTATCCA+CGG | - | chr3.1:61881170-61881189 | MS.gene052613:intron | 50.0% | |
| GTAAAATCCATCACGGGCAC+GGG | - | chr3.1:61881144-61881163 | MS.gene052613:intron | 50.0% | |
| GTAGCTAAACGGGTATCCAC+GGG | - | chr3.1:61881171-61881190 | MS.gene052613:intron | 50.0% | |
| TAAAATCCATCACGGGCACG+GGG | - | chr3.1:61881145-61881164 | MS.gene052613:intron | 50.0% | |
| TATCGGGTATGAGTACCCGT+GGG | + | chr3.1:61881264-61881283 | None:intergenic | 50.0% | |
| TCAATGGGTACCCATGGGTA+CGG | + | chr3.1:61881710-61881729 | None:intergenic | 50.0% | |
| TTATCGGGTATGAGTACCCG+TGG | + | chr3.1:61881265-61881284 | None:intergenic | 50.0% | |
| ! | ATTTTACCCACGGATACCCG+TGG | + | chr3.1:61881131-61881150 | None:intergenic | 50.0% |
| ! | TAGTGGATACCACGAGGGTA+CGG | - | chr3.1:61881630-61881649 | MS.gene052613:intron | 50.0% |
| ! | TTTTACCCACGGATACCCGT+GGG | + | chr3.1:61881130-61881149 | None:intergenic | 50.0% |
| !! | CCGTATAGTGGATACCACGA+GGG | - | chr3.1:61881625-61881644 | MS.gene052613:intron | 50.0% |
| !! | GACCTTGTTGTTGTCTCCTC+AGG | - | chr3.1:61881963-61881982 | MS.gene052613:CDS | 50.0% |
| !!! | CCCGTGATGGATTTTACCCA+CGG | + | chr3.1:61881141-61881160 | None:intergenic | 50.0% |
| ATCCACTATACGGGTACCCG+CGG | + | chr3.1:61881618-61881637 | None:intergenic | 55.0% | |
| CTGGGATACCTCAATACCCG+CGG | - | chr3.1:61881598-61881617 | MS.gene052613:intron | 55.0% | |
| GGAACTAGGAGAGAGCTCCA+AGG | + | chr3.1:61882018-61882037 | None:intergenic | 55.0% | |
| GGAGAGAGCTCCAAGGTAAC+AGG | + | chr3.1:61882011-61882030 | None:intergenic | 55.0% | |
| GGGATGTCAATGGGTACCCA+TGG | + | chr3.1:61881716-61881735 | None:intergenic | 55.0% | |
| TGGGATACCTCAATACCCGC+GGG | - | chr3.1:61881599-61881618 | MS.gene052613:intron | 55.0% | |
| ! | AGTGGATACCACGAGGGTAC+GGG | - | chr3.1:61881631-61881650 | MS.gene052613:intron | 55.0% |
| !! | CCCGTATAGTGGATACCACG+AGG | - | chr3.1:61881624-61881643 | MS.gene052613:intron | 55.0% |
| !! | GCGGGTATTGAGGTATCCCA+GGG | + | chr3.1:61881599-61881618 | None:intergenic | 55.0% |
| TCCACTATACGGGTACCCGC+GGG | + | chr3.1:61881617-61881636 | None:intergenic | 60.0% | |
| ! | GTGGATACCACGAGGGTACG+GGG | - | chr3.1:61881632-61881651 | MS.gene052613:intron | 60.0% |
| !! | CGCGGGTATTGAGGTATCCC+AGG | + | chr3.1:61881600-61881619 | None:intergenic | 60.0% |
| AATCCATCACGGGCACGGGG+CGG | - | chr3.1:61881148-61881167 | MS.gene052613:intron | 65.0% | |
| ACCCGCGGGTACCCGTATAG+TGG | - | chr3.1:61881613-61881632 | MS.gene052613:intron | 65.0% | |
| CACGGGGCGGGTAGCTAAAC+GGG | - | chr3.1:61881161-61881180 | MS.gene052613:intron | 65.0% | |
| CCACGGATACCCGTGGGCAT+GGG | + | chr3.1:61881124-61881143 | None:intergenic | 65.0% | |
| CCATGCCCACGGGTATCCGT+GGG | - | chr3.1:61881122-61881141 | MS.gene052613:intron | 65.0% | |
| GCACGGGGCGGGTAGCTAAA+CGG | - | chr3.1:61881160-61881179 | MS.gene052613:intron | 65.0% | |
| TTATCCAACGGGGCGGGGAC+TGG | - | chr3.1:61881673-61881692 | MS.gene052613:intron | 65.0% | |
| ! | ACGGGTACCCGCGGGTATTG+AGG | + | chr3.1:61881609-61881628 | None:intergenic | 65.0% |
| ! | GATACCACGAGGGTACGGGG+CGG | - | chr3.1:61881635-61881654 | MS.gene052613:intron | 65.0% |
| ATCCATCACGGGCACGGGGC+GGG | - | chr3.1:61881149-61881168 | MS.gene052613:intron | 70.0% | |
| CCCACGGATACCCGTGGGCA+TGG | + | chr3.1:61881125-61881144 | None:intergenic | 70.0% | |
| CCCATGCCCACGGGTATCCG+TGG | - | chr3.1:61881121-61881140 | MS.gene052613:intron | 70.0% | |
| GATACCAGTCCCCGCCCCGT+TGG | + | chr3.1:61881680-61881699 | None:intergenic | 70.0% | |
| ! | ACGAGGGTACGGGGCGGACA+CGG | - | chr3.1:61881641-61881660 | MS.gene052613:intron | 70.0% |
| GTGTCCGCCCCGTACCCTCG+TGG | + | chr3.1:61881642-61881661 | None:intergenic | 75.0% | |
| TACCCGCCCCGTGCCCGTGA+TGG | + | chr3.1:61881154-61881173 | None:intergenic | 75.0% | |
| ! | CGAGGGTACGGGGCGGACAC+GGG | - | chr3.1:61881642-61881661 | MS.gene052613:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 61880939 | 61882064 | 61880939 | ID=MS.gene052613 |
| chr3.1 | mRNA | 61880939 | 61882064 | 61880939 | ID=MS.gene052613.t1;Parent=MS.gene052613 |
| chr3.1 | exon | 61881961 | 61882064 | 61881961 | ID=MS.gene052613.t1.exon1;Parent=MS.gene052613.t1 |
| chr3.1 | CDS | 61881961 | 61882064 | 61881961 | ID=cds.MS.gene052613.t1;Parent=MS.gene052613.t1 |
| chr3.1 | exon | 61880939 | 61881018 | 61880939 | ID=MS.gene052613.t1.exon2;Parent=MS.gene052613.t1 |
| chr3.1 | CDS | 61880939 | 61881018 | 61880939 | ID=cds.MS.gene052613.t1;Parent=MS.gene052613.t1 |
| Gene Sequence |
| Protein sequence |
