Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24636.t1 | XP_013450091.1 | 100 | 273 | 0 | 0 | 1 | 273 | 172 | 444 | 7.30E-151 | 543.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24636.t1 | P25696 | 91.2 | 273 | 24 | 0 | 1 | 273 | 172 | 444 | 4.1e-142 | 505.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24636.t1 | A0A072UE69 | 100.0 | 273 | 0 | 0 | 1 | 273 | 122 | 394 | 5.3e-151 | 543.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051963 | MS.gene24636 | 0.838987 | 2.07E-57 | -1.69E-46 |
| MS.gene058994 | MS.gene24636 | 0.804729 | 1.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24636.t1 | MTR_7g103620 | 100.000 | 273 | 0 | 0 | 1 | 273 | 172 | 444 | 0.0 | 563 |
| MS.gene24636.t1 | MTR_7g103620 | 100.000 | 273 | 0 | 0 | 1 | 273 | 122 | 394 | 0.0 | 562 |
| MS.gene24636.t1 | MTR_6g060570 | 86.260 | 262 | 35 | 1 | 13 | 273 | 168 | 429 | 8.06e-168 | 471 |
| MS.gene24636.t1 | MTR_2g056190 | 71.375 | 269 | 74 | 2 | 1 | 269 | 226 | 491 | 1.27e-140 | 404 |
| MS.gene24636.t1 | MTR_5g096970 | 59.176 | 267 | 106 | 3 | 1 | 267 | 209 | 472 | 2.25e-110 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24636.t1 | AT2G36530 | 91.209 | 273 | 24 | 0 | 1 | 273 | 172 | 444 | 0.0 | 522 |
| MS.gene24636.t1 | AT2G36530 | 91.209 | 273 | 24 | 0 | 1 | 273 | 161 | 433 | 0.0 | 522 |
| MS.gene24636.t1 | AT1G74030 | 69.888 | 269 | 78 | 2 | 1 | 269 | 212 | 477 | 2.69e-139 | 401 |
| MS.gene24636.t1 | AT2G29560 | 58.801 | 267 | 107 | 3 | 1 | 267 | 209 | 472 | 3.77e-109 | 324 |
Find 72 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCATATGCAGGAGTTTA+TGG | 0.174723 | 7.3:-10458742 | None:intergenic |
| AAACAACAGGTCAACCAAAT+TGG | 0.247163 | 7.3:-10457069 | MS.gene24636:intron |
| TCTCAGTCACGGATCCAATT+TGG | 0.266564 | 7.3:+10457055 | None:intergenic |
| AGCTTCTAGTATGGCTCAAC+AGG | 0.287729 | 7.3:+10456490 | None:intergenic |
| CACTTTCAAAGCTTCTAGTA+TGG | 0.308227 | 7.3:+10456481 | None:intergenic |
| GGATCCTCAATTGAAACAAT+TGG | 0.323273 | 7.3:+10457425 | None:intergenic |
| GACTTCCACACCCATCTTCA+TGG | 0.331030 | 7.3:+10458686 | None:intergenic |
| CAATGTTCTTAGGTTGTCAT+TGG | 0.342489 | 7.3:-10458146 | MS.gene24636:intron |
| TCAGGAAAACAAGGAAGGTT+TGG | 0.362760 | 7.3:-10458290 | MS.gene24636:CDS |
| TTAAGACCGGAGCACCTTGC+AGG | 0.385327 | 7.3:-10456699 | MS.gene24636:CDS |
| TGTTGGAGCCTCCTCTTTCA+AGG | 0.388440 | 7.3:-10458712 | MS.gene24636:CDS |
| GACGGCTCACAGAAGATATC+TGG | 0.395388 | 7.3:-10457491 | MS.gene24636:CDS |
| ATCATACGATTTGAACTTCA+AGG | 0.407971 | 7.3:-10458084 | MS.gene24636:CDS |
| GCTAAGATGACCGGTGAGAT+TGG | 0.409902 | 7.3:-10457374 | MS.gene24636:CDS |
| AGCCGTCAGGATGTCCAAAA+AGG | 0.410162 | 7.3:-10457025 | MS.gene24636:CDS |
| TTCATTGCTGATCTTGCTGT+TGG | 0.424087 | 7.3:-10456835 | MS.gene24636:CDS |
| CTCTGACCTGCAAGGTGCTC+CGG | 0.431664 | 7.3:+10456693 | None:intergenic |
| GGTGCTGAAGCAGTGTATGC+TGG | 0.440630 | 7.3:-10456529 | MS.gene24636:CDS |
| GTACCCAATTGTTTCAATTG+AGG | 0.440774 | 7.3:-10457429 | MS.gene24636:CDS |
| AACACTAACCTGGTTGTACT+TGG | 0.444307 | 7.3:+10456663 | None:intergenic |
| GATCCTCAATTGAAACAATT+GGG | 0.460561 | 7.3:+10457426 | None:intergenic |
| GAGTTTATGGTTCTTCCTGT+TGG | 0.470295 | 7.3:-10458729 | MS.gene24636:CDS |
| TTGAAAGAGGAGGCTCCAAC+AGG | 0.471503 | 7.3:+10458714 | None:intergenic |
| CTTCATGGCTTCCTTGAAAG+AGG | 0.475418 | 7.3:+10458701 | None:intergenic |
| TCCCAGTCATCCTGGTCAAA+AGG | 0.478242 | 7.3:+10457404 | None:intergenic |
| CATAGTGCTCCCAGTCATCC+TGG | 0.492578 | 7.3:+10457396 | None:intergenic |
| GGAACCAATGTACAAATTGT+TGG | 0.493520 | 7.3:-10457353 | MS.gene24636:CDS |
| AATTGTTGGTGATGATCTCT+TGG | 0.498883 | 7.3:-10457339 | MS.gene24636:CDS |
| GCTGTGATTAAGAAGAAATA+TGG | 0.499581 | 7.3:-10458361 | MS.gene24636:CDS |
| ATCACCAACAATTTGTACAT+TGG | 0.504433 | 7.3:+10457349 | None:intergenic |
| AACAGCAAGATCAGCAATGA+AGG | 0.504723 | 7.3:+10456837 | None:intergenic |
| CTGAGAGTATTGAAGCCGTC+AGG | 0.511646 | 7.3:-10457038 | MS.gene24636:CDS |
| AAGTTCAAACCTTCTGTGGC+TGG | 0.511692 | 7.3:+10456984 | None:intergenic |
| TTGAGAATTGAGGAGGAGCT+TGG | 0.514397 | 7.3:-10456550 | MS.gene24636:CDS |
| GCAGTAAATGTTGGTGATGA+AGG | 0.515363 | 7.3:-10458331 | MS.gene24636:CDS |
| TTCTTAGGTTGTCATTGGAA+TGG | 0.517609 | 7.3:-10458141 | MS.gene24636:intron |
| TTTCAAGGAAGCCATGAAGA+TGG | 0.524759 | 7.3:-10458697 | MS.gene24636:CDS |
| TACATTGGTTCCAATCTCAC+CGG | 0.526389 | 7.3:+10457364 | None:intergenic |
| TTGGCAGCTATTGAGAATTG+AGG | 0.528228 | 7.3:-10456560 | MS.gene24636:intron |
| AAGTCCGCCATTGACAAAGC+TGG | 0.537931 | 7.3:-10458259 | MS.gene24636:CDS |
| TGCAGCTTCTGAGTTCTACA+AGG | 0.538609 | 7.3:-10458114 | MS.gene24636:CDS |
| GGTGTAACCAGCTTTGTCAA+TGG | 0.547964 | 7.3:+10458252 | None:intergenic |
| TTCAAGGAAGCCATGAAGAT+GGG | 0.550371 | 7.3:-10458696 | MS.gene24636:CDS |
| CCCCAACATTCAGGAAAACA+AGG | 0.562910 | 7.3:-10458299 | MS.gene24636:CDS |
| GGAAGCCATGAAGATGGGTG+TGG | 0.573653 | 7.3:-10458691 | MS.gene24636:CDS |
| AGTATGGCTCAACAGGGGTA+CGG | 0.574011 | 7.3:+10456497 | None:intergenic |
| TCTTGCTGTTGGTTTGTCAA+CGG | 0.581023 | 7.3:-10456824 | MS.gene24636:intron |
| TAATATACAGACCTTGGGGT+TGG | 0.582575 | 7.3:+10457313 | None:intergenic |
| ATGTCCACAGAGAGTTCAGA+AGG | 0.585044 | 7.3:-10457222 | MS.gene24636:intron |
| AACATTCAGGAAAACAAGGA+AGG | 0.590478 | 7.3:-10458295 | MS.gene24636:CDS |
| CATGGCTTCCTTGAAAGAGG+AGG | 0.591923 | 7.3:+10458704 | None:intergenic |
| GAACAGGGTCAAATTAAGAC+CGG | 0.596686 | 7.3:-10456712 | MS.gene24636:intron |
| GTGTCATGACCAGCCACAGA+AGG | 0.602021 | 7.3:-10456993 | MS.gene24636:intron |
| GCAAGACGCTCTGACCTGCA+AGG | 0.602568 | 7.3:+10456685 | None:intergenic |
| GACAAAGTTCAAACCTTCTG+TGG | 0.611804 | 7.3:+10456980 | None:intergenic |
| GAGCACTATGCTAAGATGAC+CGG | 0.616214 | 7.3:-10457383 | MS.gene24636:CDS |
| ATTGACAAAGCTGGTTACAC+CGG | 0.627043 | 7.3:-10458250 | MS.gene24636:CDS |
| GATGCAAACCGACCTTCAGA+TGG | 0.629057 | 7.3:+10458658 | None:intergenic |
| TGTTTGCAGTGGAGAGACTG+AGG | 0.633750 | 7.3:-10456863 | MS.gene24636:intron |
| GGCTTCAATACTCTCAGTCA+CGG | 0.640921 | 7.3:+10457044 | None:intergenic |
| GCAGCTATTGAGAATTGAGG+AGG | 0.642636 | 7.3:-10456557 | MS.gene24636:intron |
| GCTTCTAGTATGGCTCAACA+GGG | 0.643943 | 7.3:+10456491 | None:intergenic |
| GGTCAAGATGCAGTAAATGT+TGG | 0.647677 | 7.3:-10458340 | MS.gene24636:CDS |
| GCGTCTTGCCAAGTACAACC+AGG | 0.651331 | 7.3:-10456671 | MS.gene24636:intron |
| GGAAGTCTATCACCATCTGA+AGG | 0.660829 | 7.3:-10458670 | MS.gene24636:intron |
| GTAACCAGCTTTGTCAATGG+CGG | 0.670465 | 7.3:+10458255 | None:intergenic |
| TCTCTTGGTTACCAACCCCA+AGG | 0.674267 | 7.3:-10457324 | MS.gene24636:intron |
| CTCACAGAAGATATCTGGAG+AGG | 0.680128 | 7.3:-10457486 | MS.gene24636:CDS |
| GTAAATGTTGGTGATGAAGG+TGG | 0.697402 | 7.3:-10458328 | MS.gene24636:CDS |
| AGCTTCTGAGTTCTACAAGG+AGG | 0.702282 | 7.3:-10458111 | MS.gene24636:CDS |
| TTGACAATCCAGAACAACGA+CGG | 0.703661 | 7.3:-10457509 | MS.gene24636:intron |
| CTTCTAGTATGGCTCAACAG+GGG | 0.741364 | 7.3:+10456492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTGTATATATAAATAAAA+TGG | + | chr7.3:10457511-10457530 | None:intergenic | 10.0% |
| !!! | ATGAATTTTTTTTATTCTTT+TGG | - | chr7.3:10457935-10457954 | MS.gene24636:intron | 10.0% |
| !!! | TGAATTTTTTTTATTCTTTT+GGG | - | chr7.3:10457936-10457955 | MS.gene24636:intron | 10.0% |
| !! | TATAAATTAATATACGACAT+TGG | - | chr7.3:10457593-10457612 | MS.gene24636:intron | 15.0% |
| !! | AAAAGGAAACGTTATTATAT+TGG | + | chr7.3:10458477-10458496 | None:intergenic | 20.0% |
| !! | TATAAATAAAATGGCTAACA+AGG | + | chr7.3:10457502-10457521 | None:intergenic | 20.0% |
| !! | TATATATACAACTTGAAAGA+TGG | - | chr7.3:10457518-10457537 | MS.gene24636:intron | 20.0% |
| !!! | AAAATTTAGATAATGCCTTT+TGG | + | chr7.3:10456611-10456630 | None:intergenic | 20.0% |
| !!! | AGATTTGTTTCATATTATTG+AGG | + | chr7.3:10456640-10456659 | None:intergenic | 20.0% |
| !!! | TCAACATAAATGTTTTTTTG+AGG | + | chr7.3:10457660-10457679 | None:intergenic | 20.0% |
| ! | AAACGTTATTATATTGGACA+TGG | + | chr7.3:10458471-10458490 | None:intergenic | 25.0% |
| ! | AACGTTATTATATTGGACAT+GGG | + | chr7.3:10458470-10458489 | None:intergenic | 25.0% |
| ! | ATCAATACATTTATCTACCT+AGG | + | chr7.3:10458113-10458132 | None:intergenic | 25.0% |
| ! | ATTCTTAACCCTTCTTAAAA+AGG | + | chr7.3:10457453-10457472 | None:intergenic | 25.0% |
| ! | CAACTGTAAGATATTTAACA+AGG | - | chr7.3:10458302-10458321 | MS.gene24636:CDS | 25.0% |
| ! | TCAAGATACGATTAACAAAA+AGG | + | chr7.3:10458494-10458513 | None:intergenic | 25.0% |
| ! | TCATATAATATACAGACCTT+GGG | + | chr7.3:10457919-10457938 | None:intergenic | 25.0% |
| ! | TCTCAGATTTATTCATTTGA+GGG | - | chr7.3:10457048-10457067 | MS.gene24636:CDS | 25.0% |
| ! | TTCATATAATATACAGACCT+TGG | + | chr7.3:10457920-10457939 | None:intergenic | 25.0% |
| ! | TTCTCAGATTTATTCATTTG+AGG | - | chr7.3:10457047-10457066 | MS.gene24636:CDS | 25.0% |
| !! | AACAATAGAAACAGTTCTTT+TGG | - | chr7.3:10457398-10457417 | MS.gene24636:CDS | 25.0% |
| !! | AATTTTCTGTTTCGGTTATT+TGG | - | chr7.3:10457023-10457042 | MS.gene24636:CDS | 25.0% |
| !! | CTCTATTCAATTTTCTGTTT+CGG | - | chr7.3:10457015-10457034 | MS.gene24636:CDS | 25.0% |
| !! | TTTGTTGATTACATTTGCTT+CGG | - | chr7.3:10458582-10458601 | MS.gene24636:intron | 25.0% |
| !!! | AGTGAATAATTTTGAAGAGA+AGG | + | chr7.3:10457244-10457263 | None:intergenic | 25.0% |
| !!! | GTGAATAATTTTGAAGAGAA+GGG | + | chr7.3:10457243-10457262 | None:intergenic | 25.0% |
| !!! | TCATATATTTTTGTTTGCAG+TGG | - | chr7.3:10458350-10458369 | MS.gene24636:CDS | 25.0% |
| !!! | TGTTTTTTACCAGTAATAAG+CGG | - | chr7.3:10456685-10456704 | MS.gene24636:CDS | 25.0% |
| ACAATTGTTGAACTGAGATA+AGG | + | chr7.3:10458431-10458450 | None:intergenic | 30.0% | |
| ATCACCAACAATTTGTACAT+TGG | + | chr7.3:10457878-10457897 | None:intergenic | 30.0% | |
| ATCATACGATTTGAACTTCA+AGG | - | chr7.3:10457140-10457159 | MS.gene24636:intron | 30.0% | |
| CATATAATATACAGACCTTG+GGG | + | chr7.3:10457918-10457937 | None:intergenic | 30.0% | |
| CGAAACAGAAAATTGAATAG+AGG | + | chr7.3:10457017-10457036 | None:intergenic | 30.0% | |
| GATCCTCAATTGAAACAATT+GGG | + | chr7.3:10457801-10457820 | None:intergenic | 30.0% | |
| GCTGTGATTAAGAAGAAATA+TGG | - | chr7.3:10456863-10456882 | MS.gene24636:intron | 30.0% | |
| TAATAACAACTCTGGTACTA+AGG | + | chr7.3:10457366-10457385 | None:intergenic | 30.0% | |
| TACTGGTAAAAAACAAAGCT+TGG | + | chr7.3:10456680-10456699 | None:intergenic | 30.0% | |
| TGTTAATCGTATCTTGAACA+GGG | - | chr7.3:10458497-10458516 | MS.gene24636:intron | 30.0% | |
| TTGTTAATCGTATCTTGAAC+AGG | - | chr7.3:10458496-10458515 | MS.gene24636:intron | 30.0% | |
| ! | CTTGACATATTTGAAACAAC+AGG | - | chr7.3:10458142-10458161 | MS.gene24636:intron | 30.0% |
| !! | TCAAGGTACTCTCATTTTAT+TGG | - | chr7.3:10458058-10458077 | MS.gene24636:intron | 30.0% |
| !!! | GTTTTTTACCAGTAATAAGC+GGG | - | chr7.3:10456686-10456705 | MS.gene24636:CDS | 30.0% |
| AAACAACAGGTCAACCAAAT+TGG | - | chr7.3:10458155-10458174 | MS.gene24636:intron | 35.0% | |
| AAAGAGTGAGAAAGGAAAGT+CGG | + | chr7.3:10457275-10457294 | None:intergenic | 35.0% | |
| AACATTCAGGAAAACAAGGA+AGG | - | chr7.3:10456929-10456948 | MS.gene24636:intron | 35.0% | |
| AAGAACCATCAAAGCATATG+TGG | + | chr7.3:10456770-10456789 | None:intergenic | 35.0% | |
| AAGCTCAAGCAGTTTCTAAT+TGG | - | chr7.3:10458630-10458649 | MS.gene24636:intron | 35.0% | |
| AGCAAAAAGCAACAAATCAG+AGG | + | chr7.3:10457980-10457999 | None:intergenic | 35.0% | |
| AGGCTTTCTAATAACAACTC+TGG | + | chr7.3:10457374-10457393 | None:intergenic | 35.0% | |
| ATTCGTTTACCTCTTCCAAA+AGG | - | chr7.3:10456593-10456612 | MS.gene24636:intron | 35.0% | |
| GGAACCAATGTACAAATTGT+TGG | - | chr7.3:10457871-10457890 | MS.gene24636:intron | 35.0% | |
| GGAGAAAAAACTTACTTTGC+CGG | + | chr7.3:10456996-10457015 | None:intergenic | 35.0% | |
| GGATCCTCAATTGAAACAAT+TGG | + | chr7.3:10457802-10457821 | None:intergenic | 35.0% | |
| GTAATCAACAAACACTAACC+TGG | + | chr7.3:10458574-10458593 | None:intergenic | 35.0% | |
| GTACCCAATTGTTTCAATTG+AGG | - | chr7.3:10457795-10457814 | MS.gene24636:intron | 35.0% | |
| GTTCCTTCTGATATCATTTC+AGG | - | chr7.3:10456841-10456860 | MS.gene24636:CDS | 35.0% | |
| TAACCCTTCTTAAAAAGGAG+CGG | + | chr7.3:10457448-10457467 | None:intergenic | 35.0% | |
| TCAAGCAGTTTCTAATTGGT+TGG | - | chr7.3:10458634-10458653 | MS.gene24636:intron | 35.0% | |
| TCTATCCACATATGCTTTGA+TGG | - | chr7.3:10456762-10456781 | MS.gene24636:intron | 35.0% | |
| ! | ACTTTCCTTTCTCACTCTTT+TGG | - | chr7.3:10457275-10457294 | MS.gene24636:intron | 35.0% |
| ! | AGAAACAGTTCTTTTGGCAA+AGG | - | chr7.3:10457404-10457423 | MS.gene24636:CDS | 35.0% |
| ! | AGAGTTGTTATTAGAAAGCC+TGG | - | chr7.3:10457373-10457392 | MS.gene24636:CDS | 35.0% |
| ! | CAATGTTCTTAGGTTGTCAT+TGG | - | chr7.3:10457078-10457097 | MS.gene24636:intron | 35.0% |
| ! | GAAACAGTTCTTTTGGCAAA+GGG | - | chr7.3:10457405-10457424 | MS.gene24636:CDS | 35.0% |
| ! | GAGTTGTTATTAGAAAGCCT+GGG | - | chr7.3:10457374-10457393 | MS.gene24636:CDS | 35.0% |
| ! | TTCTTAGGTTGTCATTGGAA+TGG | - | chr7.3:10457083-10457102 | MS.gene24636:intron | 35.0% |
| !! | AACTGTTTCTATTGTTACCC+AGG | + | chr7.3:10457394-10457413 | None:intergenic | 35.0% |
| !! | AATTGTTGGTGATGATCTCT+TGG | - | chr7.3:10457885-10457904 | MS.gene24636:intron | 35.0% |
| !! | ATATCCGCTCCTTTTTAAGA+AGG | - | chr7.3:10457441-10457460 | MS.gene24636:CDS | 35.0% |
| !! | ATTTTGAAGAGAAGGGAGTA+AGG | + | chr7.3:10457236-10457255 | None:intergenic | 35.0% |
| !! | TAGATAATGCCTTTTGGAAG+AGG | + | chr7.3:10456605-10456624 | None:intergenic | 35.0% |
| !! | TATCCGCTCCTTTTTAAGAA+GGG | - | chr7.3:10457442-10457461 | MS.gene24636:CDS | 35.0% |
| !!! | TCCTTGTTTTCCTGAATGTT+GGG | + | chr7.3:10456929-10456948 | None:intergenic | 35.0% |
| !!! | TTCCTTGTTTTCCTGAATGT+TGG | + | chr7.3:10456930-10456949 | None:intergenic | 35.0% |
| AACACTAACCTGGTTGTACT+TGG | + | chr7.3:10458564-10458583 | None:intergenic | 40.0% | |
| AACAGCAAGATCAGCAATGA+AGG | + | chr7.3:10458390-10458409 | None:intergenic | 40.0% | |
| AAGCACCAAAAGAGTGAGAA+AGG | + | chr7.3:10457283-10457302 | None:intergenic | 40.0% | |
| ATTGACAAAGCTGGTTACAC+CGG | - | chr7.3:10456974-10456993 | MS.gene24636:intron | 40.0% | |
| CAGCCTGAAATGATATCAGA+AGG | + | chr7.3:10456847-10456866 | None:intergenic | 40.0% | |
| CTAAGGTGTATAATCAGCAC+AGG | + | chr7.3:10457349-10457368 | None:intergenic | 40.0% | |
| GAACAGGGTCAAATTAAGAC+CGG | - | chr7.3:10458512-10458531 | MS.gene24636:intron | 40.0% | |
| GACAAAGTTCAAACCTTCTG+TGG | + | chr7.3:10458247-10458266 | None:intergenic | 40.0% | |
| GAGTTTATGGTTCTTCCTGT+TGG | - | chr7.3:10456495-10456514 | MS.gene24636:CDS | 40.0% | |
| GGGAGTTTGACAATGTTCTT+AGG | - | chr7.3:10457068-10457087 | MS.gene24636:intron | 40.0% | |
| GGTCAAGATGCAGTAAATGT+TGG | - | chr7.3:10456884-10456903 | MS.gene24636:intron | 40.0% | |
| TAATATACAGACCTTGGGGT+TGG | + | chr7.3:10457914-10457933 | None:intergenic | 40.0% | |
| TACATTTGCTTCGGTTGCTT+CGG | - | chr7.3:10458591-10458610 | MS.gene24636:intron | 40.0% | |
| TCAGGAAAACAAGGAAGGTT+TGG | - | chr7.3:10456934-10456953 | MS.gene24636:intron | 40.0% | |
| TTCAAGGAAGCCATGAAGAT+GGG | - | chr7.3:10456528-10456547 | MS.gene24636:CDS | 40.0% | |
| TTGACAATCCAGAACAACGA+CGG | - | chr7.3:10457715-10457734 | MS.gene24636:intron | 40.0% | |
| TTGGCAGCTATTGAGAATTG+AGG | - | chr7.3:10458664-10458683 | MS.gene24636:intron | 40.0% | |
| TTTCAAGGAAGCCATGAAGA+TGG | - | chr7.3:10456527-10456546 | MS.gene24636:CDS | 40.0% | |
| ! | AAGGATTTGAGACTTCTGAG+CGG | + | chr7.3:10457217-10457236 | None:intergenic | 40.0% |
| ! | AATTGAGGATCCTTTTGACC+AGG | - | chr7.3:10457810-10457829 | MS.gene24636:intron | 40.0% |
| ! | ATGCAATGCTCTTTTGCTCA+AGG | - | chr7.3:10458041-10458060 | MS.gene24636:intron | 40.0% |
| ! | GGCAAATATTTTCTGCAGAG+AGG | - | chr7.3:10458079-10458098 | MS.gene24636:CDS | 40.0% |
| ! | TAATAAGCGGGTGCTTTTAC+TGG | - | chr7.3:10456698-10456717 | MS.gene24636:CDS | 40.0% |
| ! | TTCATTGCTGATCTTGCTGT+TGG | - | chr7.3:10458389-10458408 | MS.gene24636:intron | 40.0% |
| !! | CTTGTTTTCCTGAATGTTGG+GGG | + | chr7.3:10456927-10456946 | None:intergenic | 40.0% |
| !! | GCAGTAAATGTTGGTGATGA+AGG | - | chr7.3:10456893-10456912 | MS.gene24636:intron | 40.0% |
| !! | GTAAATGTTGGTGATGAAGG+TGG | - | chr7.3:10456896-10456915 | MS.gene24636:intron | 40.0% |
| !! | TAAAAGCACCCGCTTATTAC+TGG | + | chr7.3:10456697-10456716 | None:intergenic | 40.0% |
| !! | TACATTGGTTCCAATCTCAC+CGG | + | chr7.3:10457863-10457882 | None:intergenic | 40.0% |
| !! | TCTTGCTGTTGGTTTGTCAA+CGG | - | chr7.3:10458400-10458419 | MS.gene24636:intron | 40.0% |
| !!! | CCTTGTTTTCCTGAATGTTG+GGG | + | chr7.3:10456928-10456947 | None:intergenic | 40.0% |
| AAGTTCAAACCTTCTGTGGC+TGG | + | chr7.3:10458243-10458262 | None:intergenic | 45.0% | |
| AGCATATGTGGATAGACACC+AGG | + | chr7.3:10456758-10456777 | None:intergenic | 45.0% | |
| AGCTTCTGAGTTCTACAAGG+AGG | - | chr7.3:10457113-10457132 | MS.gene24636:intron | 45.0% | |
| AGGTGTATAATCAGCACAGG+AGG | + | chr7.3:10457346-10457365 | None:intergenic | 45.0% | |
| AGTGAGAAAGGAAAGTCGGT+TGG | + | chr7.3:10457271-10457290 | None:intergenic | 45.0% | |
| ATGTCCAAAAAGGCTGGATG+GGG | - | chr7.3:10458209-10458228 | MS.gene24636:intron | 45.0% | |
| ATGTCCACAGAGAGTTCAGA+AGG | - | chr7.3:10458002-10458021 | MS.gene24636:intron | 45.0% | |
| ATTGCCTTCTGAACTCTCTG+TGG | + | chr7.3:10458009-10458028 | None:intergenic | 45.0% | |
| CCCCAACATTCAGGAAAACA+AGG | - | chr7.3:10456925-10456944 | MS.gene24636:intron | 45.0% | |
| CTCACAGAAGATATCTGGAG+AGG | - | chr7.3:10457738-10457757 | MS.gene24636:intron | 45.0% | |
| CTTCATGGCTTCCTTGAAAG+AGG | + | chr7.3:10456526-10456545 | None:intergenic | 45.0% | |
| GAGCACTATGCTAAGATGAC+CGG | - | chr7.3:10457841-10457860 | MS.gene24636:intron | 45.0% | |
| GATGTCCAAAAAGGCTGGAT+GGG | - | chr7.3:10458208-10458227 | MS.gene24636:intron | 45.0% | |
| GCAGAGAGGTTATTAGACCT+AGG | - | chr7.3:10458093-10458112 | MS.gene24636:CDS | 45.0% | |
| GCAGCTATTGAGAATTGAGG+AGG | - | chr7.3:10458667-10458686 | MS.gene24636:intron | 45.0% | |
| GCATATGTGGATAGACACCA+GGG | + | chr7.3:10456757-10456776 | None:intergenic | 45.0% | |
| GGAAGTCTATCACCATCTGA+AGG | - | chr7.3:10456554-10456573 | MS.gene24636:CDS | 45.0% | |
| GGCTTCAATACTCTCAGTCA+CGG | + | chr7.3:10458183-10458202 | None:intergenic | 45.0% | |
| GTCTATCACCATCTGAAGGT+CGG | - | chr7.3:10456558-10456577 | MS.gene24636:intron | 45.0% | |
| GTGAGAAAGGAAAGTCGGTT+GGG | + | chr7.3:10457270-10457289 | None:intergenic | 45.0% | |
| TCTCAGTCACGGATCCAATT+TGG | + | chr7.3:10458172-10458191 | None:intergenic | 45.0% | |
| TGAGAAAGGAAAGTCGGTTG+GGG | + | chr7.3:10457269-10457288 | None:intergenic | 45.0% | |
| TGCAGCTTCTGAGTTCTACA+AGG | - | chr7.3:10457110-10457129 | MS.gene24636:intron | 45.0% | |
| TTGAGAATTGAGGAGGAGCT+TGG | - | chr7.3:10458674-10458693 | MS.gene24636:CDS | 45.0% | |
| ! | AGCCTTTTTGGACATCCTGA+CGG | + | chr7.3:10458204-10458223 | None:intergenic | 45.0% |
| ! | AGGATTTGAGACTTCTGAGC+GGG | + | chr7.3:10457216-10457235 | None:intergenic | 45.0% |
| ! | ATCCTTTTGACCAGGATGAC+TGG | - | chr7.3:10457818-10457837 | MS.gene24636:intron | 45.0% |
| ! | CTAATTGGTTGGTGCTCACT+TGG | - | chr7.3:10458645-10458664 | MS.gene24636:intron | 45.0% |
| ! | GGTGTAACCAGCTTTGTCAA+TGG | + | chr7.3:10456975-10456994 | None:intergenic | 45.0% |
| ! | GTAACCAGCTTTGTCAATGG+CGG | + | chr7.3:10456972-10456991 | None:intergenic | 45.0% |
| ! | TCCTTTTGACCAGGATGACT+GGG | - | chr7.3:10457819-10457838 | MS.gene24636:intron | 45.0% |
| AAGTCCGCCATTGACAAAGC+TGG | - | chr7.3:10456965-10456984 | MS.gene24636:intron | 50.0% | |
| AGCCGTCAGGATGTCCAAAA+AGG | - | chr7.3:10458199-10458218 | MS.gene24636:intron | 50.0% | |
| AGTATGGCTCAACAGGGGTA+CGG | + | chr7.3:10458730-10458749 | None:intergenic | 50.0% | |
| CATGGCTTCCTTGAAAGAGG+AGG | + | chr7.3:10456523-10456542 | None:intergenic | 50.0% | |
| GACGGCTCACAGAAGATATC+TGG | - | chr7.3:10457733-10457752 | MS.gene24636:intron | 50.0% | |
| GACTTCCACACCCATCTTCA+TGG | + | chr7.3:10456541-10456560 | None:intergenic | 50.0% | |
| GATGCAAACCGACCTTCAGA+TGG | + | chr7.3:10456569-10456588 | None:intergenic | 50.0% | |
| GCTAAGATGACCGGTGAGAT+TGG | - | chr7.3:10457850-10457869 | MS.gene24636:intron | 50.0% | |
| GGATGTCCAAAAAGGCTGGA+TGG | - | chr7.3:10458207-10458226 | MS.gene24636:intron | 50.0% | |
| GTCAGGATGTCCAAAAAGGC+TGG | - | chr7.3:10458203-10458222 | MS.gene24636:intron | 50.0% | |
| TACCCCTGTTGAGCCATACT+AGG | - | chr7.3:10458730-10458749 | MS.gene24636:CDS | 50.0% | |
| TCCCAGTCATCCTGGTCAAA+AGG | + | chr7.3:10457823-10457842 | None:intergenic | 50.0% | |
| TCTCTTGGTTACCAACCCCA+AGG | - | chr7.3:10457900-10457919 | MS.gene24636:intron | 50.0% | |
| TGTTGGAGCCTCCTCTTTCA+AGG | - | chr7.3:10456512-10456531 | MS.gene24636:CDS | 50.0% | |
| TGTTTGCAGTGGAGAGACTG+AGG | - | chr7.3:10458361-10458380 | MS.gene24636:CDS | 50.0% | |
| TTGAAAGAGGAGGCTCCAAC+AGG | + | chr7.3:10456513-10456532 | None:intergenic | 50.0% | |
| ! | GGATTTGAGACTTCTGAGCG+GGG | + | chr7.3:10457215-10457234 | None:intergenic | 50.0% |
| ! | TCAGCACAGGAGGCATAATG+AGG | + | chr7.3:10457336-10457355 | None:intergenic | 50.0% |
| !! | CTGAGAGTATTGAAGCCGTC+AGG | - | chr7.3:10458186-10458205 | MS.gene24636:intron | 50.0% |
| AGACTTCTGAGCGGGGAGAT+TGG | + | chr7.3:10457208-10457227 | None:intergenic | 55.0% | |
| ATGTGGATAGACACCAGGGC+TGG | + | chr7.3:10456753-10456772 | None:intergenic | 55.0% | |
| CATAGTGCTCCCAGTCATCC+TGG | + | chr7.3:10457831-10457850 | None:intergenic | 55.0% | |
| GCGTCTTGCCAAGTACAACC+AGG | - | chr7.3:10458553-10458572 | MS.gene24636:intron | 55.0% | |
| GGAAGCCATGAAGATGGGTG+TGG | - | chr7.3:10456533-10456552 | MS.gene24636:CDS | 55.0% | |
| GTGTCATGACCAGCCACAGA+AGG | - | chr7.3:10458231-10458250 | MS.gene24636:intron | 55.0% | |
| TCTGAGCGGGGAGATTGGTA+TGG | + | chr7.3:10457203-10457222 | None:intergenic | 55.0% | |
| TCTGTGAGCCGTCGTTGTTC+TGG | + | chr7.3:10457726-10457745 | None:intergenic | 55.0% | |
| ! | GACACCCCATCCAGCCTTTT+TGG | + | chr7.3:10458216-10458235 | None:intergenic | 55.0% |
| ! | GGTGCTGAAGCAGTGTATGC+TGG | - | chr7.3:10458695-10458714 | MS.gene24636:CDS | 55.0% |
| ! | TGGCTTTGCCCCCAACATTC+AGG | - | chr7.3:10456916-10456935 | MS.gene24636:intron | 55.0% |
| ! | TTAAGACCGGAGCACCTTGC+AGG | - | chr7.3:10458525-10458544 | MS.gene24636:intron | 55.0% |
| AGTCTCCTTTGTGCCAGCCC+TGG | - | chr7.3:10456737-10456756 | MS.gene24636:intron | 60.0% | |
| GCAAGACGCTCTGACCTGCA+AGG | + | chr7.3:10458542-10458561 | None:intergenic | 60.0% | |
| ! | AGACACCAGGGCTGGCACAA+AGG | + | chr7.3:10456745-10456764 | None:intergenic | 60.0% |
| ! | CTCTGACCTGCAAGGTGCTC+CGG | + | chr7.3:10458534-10458553 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 10456495 | 10458751 | 10456495 | ID=MS.gene24636 |
| chr7.3 | mRNA | 10456495 | 10458751 | 10456495 | ID=MS.gene24636.t1;Parent=MS.gene24636 |
| chr7.3 | exon | 10458671 | 10458751 | 10458671 | ID=MS.gene24636.t1.exon1;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10458671 | 10458751 | 10458671 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10458246 | 10458383 | 10458246 | ID=MS.gene24636.t1.exon2;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10458246 | 10458383 | 10458246 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10458079 | 10458156 | 10458079 | ID=MS.gene24636.t1.exon3;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10458079 | 10458156 | 10458079 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10457325 | 10457519 | 10457325 | ID=MS.gene24636.t1.exon4;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10457325 | 10457519 | 10457325 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10457184 | 10457234 | 10457184 | ID=MS.gene24636.t1.exon5;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10457184 | 10457234 | 10457184 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10456994 | 10457082 | 10456994 | ID=MS.gene24636.t1.exon6;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10456994 | 10457082 | 10456994 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10456825 | 10456876 | 10456825 | ID=MS.gene24636.t1.exon7;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10456825 | 10456876 | 10456825 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10456672 | 10456728 | 10456672 | ID=MS.gene24636.t1.exon8;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10456672 | 10456728 | 10456672 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| chr7.3 | exon | 10456495 | 10456575 | 10456495 | ID=MS.gene24636.t1.exon9;Parent=MS.gene24636.t1 |
| chr7.3 | CDS | 10456495 | 10456575 | 10456495 | ID=cds.MS.gene24636.t1;Parent=MS.gene24636.t1 |
| Gene Sequence |
| Protein sequence |
