Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058994.t1 | XP_013468346.1 | 99.2 | 128 | 1 | 0 | 1 | 128 | 28 | 155 | 1.20E-64 | 255.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058994.t1 | Q9FLF0 | 93.0 | 128 | 9 | 0 | 1 | 128 | 1 | 128 | 3.7e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058994.t1 | G7ZZL1 | 99.2 | 128 | 1 | 0 | 1 | 128 | 28 | 155 | 8.8e-65 | 255.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene058994 | 0.80258 | 5.24E-49 | -1.69E-46 |
| MS.gene050252 | MS.gene058994 | 0.859747 | 3.34E-63 | -1.69E-46 |
| MS.gene054733 | MS.gene058994 | 0.834653 | 2.65E-56 | -1.69E-46 |
| MS.gene057272 | MS.gene058994 | 0.824082 | 9.79E-54 | -1.69E-46 |
| MS.gene058994 | MS.gene059878 | 0.824799 | 6.63E-54 | -1.69E-46 |
| MS.gene058994 | MS.gene059880 | 0.841177 | 5.56E-58 | -1.69E-46 |
| MS.gene058994 | MS.gene063979 | 0.852861 | 3.50E-61 | -1.69E-46 |
| MS.gene058994 | MS.gene06617 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene058994 | MS.gene066583 | 0.808628 | 2.82E-50 | -1.69E-46 |
| MS.gene058994 | MS.gene066811 | 0.810239 | 1.27E-50 | -1.69E-46 |
| MS.gene058994 | MS.gene07018 | 0.811377 | 7.22E-51 | -1.69E-46 |
| MS.gene058994 | MS.gene073358 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene058994 | MS.gene073893 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene22507 | 0.802837 | 4.64E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene23437 | 0.808966 | 2.39E-50 | -1.69E-46 |
| MS.gene058994 | MS.gene24054 | 0.84124 | 5.36E-58 | -1.69E-46 |
| MS.gene058994 | MS.gene24636 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene25236 | 0.810341 | 1.21E-50 | -1.69E-46 |
| MS.gene058994 | MS.gene25639 | 0.811308 | 7.47E-51 | -1.69E-46 |
| MS.gene058994 | MS.gene25903 | 0.803306 | 3.71E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene27265 | 0.851694 | 7.51E-61 | -1.69E-46 |
| MS.gene058994 | MS.gene34372 | 0.809257 | 2.07E-50 | -1.69E-46 |
| MS.gene058994 | MS.gene38222 | 0.844359 | 7.94E-59 | -1.69E-46 |
| MS.gene058994 | MS.gene40834 | 0.840167 | 1.02E-57 | -1.69E-46 |
| MS.gene058994 | MS.gene44354 | 0.809522 | 1.81E-50 | -1.69E-46 |
| MS.gene058994 | MS.gene48048 | 0.855305 | 6.90E-62 | -1.69E-46 |
| MS.gene058994 | MS.gene50640 | 0.82135 | 4.23E-53 | -1.69E-46 |
| MS.gene058994 | MS.gene54437 | 0.820847 | 5.52E-53 | -1.69E-46 |
| MS.gene058994 | MS.gene55890 | 0.824624 | 7.30E-54 | -1.69E-46 |
| MS.gene058994 | MS.gene59457 | 0.867402 | 1.41E-65 | -1.69E-46 |
| MS.gene058994 | MS.gene61251 | 0.854738 | 1.01E-61 | -1.69E-46 |
| MS.gene058994 | MS.gene63973 | 0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene058994 | MS.gene64754 | 0.888111 | 7.89E-73 | -1.69E-46 |
| MS.gene058994 | MS.gene68049 | 0.833538 | 5.04E-56 | -1.69E-46 |
| MS.gene058994 | MS.gene68085 | 0.834317 | 3.21E-56 | -1.69E-46 |
| MS.gene058994 | MS.gene70805 | 0.804667 | 1.94E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene79721 | 0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene058994 | MS.gene82545 | 0.801874 | 7.33E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene88081 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene058994 | MS.gene89608 | 0.801166 | 1.02E-48 | -1.69E-46 |
| MS.gene058994 | MS.gene90360 | 0.868888 | 4.67E-66 | -1.69E-46 |
| MS.gene058994 | MS.gene93753 | 0.873238 | 1.72E-67 | -1.69E-46 |
| MS.gene058994 | MS.gene95803 | 0.805311 | 1.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058994.t1 | MTR_1g068965 | 99.219 | 128 | 1 | 0 | 1 | 128 | 28 | 155 | 2.00e-89 | 259 |
| MS.gene058994.t1 | MTR_4g021290 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.50e-88 | 256 |
| MS.gene058994.t1 | MTR_3g005450 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.50e-88 | 256 |
| MS.gene058994.t1 | MTR_3g005430 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 1.50e-88 | 256 |
| MS.gene058994.t1 | MTR_7g067490 | 96.875 | 128 | 4 | 0 | 1 | 128 | 1 | 128 | 8.03e-87 | 252 |
| MS.gene058994.t1 | MTR_4g108310 | 96.522 | 115 | 4 | 0 | 1 | 115 | 1 | 115 | 1.31e-76 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058994.t1 | AT5G39850 | 92.969 | 128 | 9 | 0 | 1 | 128 | 1 | 128 | 8.73e-83 | 241 |
| MS.gene058994.t1 | AT5G15200 | 87.500 | 128 | 16 | 0 | 1 | 128 | 1 | 128 | 1.43e-78 | 229 |
| MS.gene058994.t1 | AT5G15200 | 87.500 | 128 | 16 | 0 | 1 | 128 | 1 | 128 | 2.85e-78 | 230 |
Find 44 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGACACTTGTATTCAAATC+TGG | 0.328033 | 1.2:+51664702 | MS.gene058994:CDS |
| GTTTCATAGGGTTGGAAGGC+AGG | 0.358634 | 1.2:+51665990 | MS.gene058994:intron |
| TCCTTATGAGAAGGAACGTT+TGG | 0.386694 | 1.2:+51664425 | MS.gene058994:CDS |
| TTCGGTGCAAGAGGGAGCTT+TGG | 0.394293 | 1.2:+51664481 | MS.gene058994:CDS |
| ACAGATTCCTTGCATTGTTA+CGG | 0.425233 | 1.2:-51664530 | None:intergenic |
| GGTGAACATCCCATCCTTCA+TGG | 0.437604 | 1.2:+51666014 | MS.gene058994:CDS |
| TCCTTGCATTGTTACGGATA+CGG | 0.449433 | 1.2:-51664524 | None:intergenic |
| GGTGCAAGAGGGAGCTTTGG+AGG | 0.455063 | 1.2:+51664484 | MS.gene058994:CDS |
| AAGATAGATACTCACAGTTC+CGG | 0.468521 | 1.2:-51664277 | None:intergenic |
| TTGAAGCTGGTCGGAGAGTA+CGG | 0.474460 | 1.2:+51664456 | MS.gene058994:CDS |
| TGGTTAAAGTTGCTTTCTAC+CGG | 0.476762 | 1.2:+51664258 | MS.gene058994:CDS |
| GAACCCTCGTCGTATCTTTG+AGG | 0.479838 | 1.2:+51664569 | MS.gene058994:CDS |
| TCCAAACGTTCCTTCTCATA+AGG | 0.485854 | 1.2:-51664426 | None:intergenic |
| GAACAAACTTGATTATGTCT+TGG | 0.487846 | 1.2:+51664644 | MS.gene058994:CDS |
| CCTAGCATGATGAATGGACT+TGG | 0.491509 | 1.2:-51664730 | None:intergenic |
| TGGTCGGAGAGTACGGTCTT+CGG | 0.495090 | 1.2:+51664463 | MS.gene058994:CDS |
| AACCCTCGTCGTATCTTTGA+GGG | 0.518161 | 1.2:+51664570 | MS.gene058994:CDS |
| AAGAACCCTAGCATGATGAA+TGG | 0.528751 | 1.2:-51664736 | None:intergenic |
| TCAACCCTCACCATGAAGGA+TGG | 0.531047 | 1.2:-51666024 | None:intergenic |
| CCAAGTCCATTCATCATGCT+AGG | 0.540233 | 1.2:+51664730 | MS.gene058994:CDS |
| ACTTGTATTCAAATCTGGTA+TGG | 0.540887 | 1.2:+51664707 | MS.gene058994:CDS |
| TTTGGTTTCATAGGGTTGGA+AGG | 0.553079 | 1.2:+51665986 | MS.gene058994:intron |
| GTGCAAGAGGGAGCTTTGGA+GGG | 0.553805 | 1.2:+51664485 | MS.gene058994:CDS |
| CAACCCTCACCATGAAGGAT+GGG | 0.569875 | 1.2:-51666023 | None:intergenic |
| TGAATCAACCCTCACCATGA+AGG | 0.571223 | 1.2:-51666028 | None:intergenic |
| TGCAAGGAATCTGTTGACCT+TGG | 0.574046 | 1.2:+51664539 | MS.gene058994:CDS |
| AGGGTGAAGCGCTATTGAGA+AGG | 0.577811 | 1.2:+51664589 | MS.gene058994:CDS |
| TTTGGATGCTGAGTTGAAGC+TGG | 0.580359 | 1.2:+51664443 | MS.gene058994:CDS |
| AGTACGGTCTTCGGTGCAAG+AGG | 0.589539 | 1.2:+51664472 | MS.gene058994:CDS |
| CAAGTCCATTCATCATGCTA+GGG | 0.590386 | 1.2:+51664731 | MS.gene058994:CDS |
| CATCCCATCCTTCATGGTGA+GGG | 0.593258 | 1.2:+51666020 | MS.gene058994:CDS |
| GCCGTATCCGTAACAATGCA+AGG | 0.595109 | 1.2:+51664523 | MS.gene058994:CDS |
| GCCGCGTCGTCCTTATGAGA+AGG | 0.598413 | 1.2:+51664416 | MS.gene058994:CDS |
| TCATAGGGTTGGAAGGCAGG+TGG | 0.599698 | 1.2:+51665993 | MS.gene058994:intron |
| ACATCCCATCCTTCATGGTG+AGG | 0.616704 | 1.2:+51666019 | MS.gene058994:CDS |
| ACGAGGGTTCTTCTCATCCA+AGG | 0.618972 | 1.2:-51664556 | None:intergenic |
| TTGAGAAGGATGTTTAAGCA+TGG | 0.626035 | 1.2:+51664603 | MS.gene058994:CDS |
| GATGCTGAGTTGAAGCTGGT+CGG | 0.640820 | 1.2:+51664447 | MS.gene058994:CDS |
| ATTTGAATACAAGTGTCTGA+AGG | 0.654254 | 1.2:-51664698 | None:intergenic |
| TGAATACAAGTGTCTGAAGG+CGG | 0.659618 | 1.2:-51664695 | None:intergenic |
| GTACGGTCTTCGGTGCAAGA+GGG | 0.685910 | 1.2:+51664473 | MS.gene058994:CDS |
| TCACCCTCAAAGATACGACG+AGG | 0.726164 | 1.2:-51664573 | None:intergenic |
| CACCCTCAAAGATACGACGA+GGG | 0.739733 | 1.2:-51664572 | None:intergenic |
| TCCTTCTCATAAGGACGACG+CGG | 0.741698 | 1.2:-51664417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGAAAAATATAAACA+AGG | - | chr1.2:51665885-51665904 | None:intergenic | 10.0% |
| !! | AATAAATAAATAAACATTAG+GGG | - | chr1.2:51665923-51665942 | None:intergenic | 10.0% |
| !! | AATTAATGATAATAATGAAA+TGG | - | chr1.2:51664303-51664322 | None:intergenic | 10.0% |
| !!! | ATGTATGATAATATTATTTT+TGG | + | chr1.2:51665968-51665987 | MS.gene058994:intron | 10.0% |
| !!! | AATATTATTTTTGGTTTCAT+AGG | + | chr1.2:51665977-51665996 | MS.gene058994:intron | 15.0% |
| !!! | ATATTATTTTTGGTTTCATA+GGG | + | chr1.2:51665978-51665997 | MS.gene058994:intron | 15.0% |
| !!! | TGAATTTTTCTGATTTTTTA+TGG | + | chr1.2:51664823-51664842 | MS.gene058994:intron | 15.0% |
| !!! | TTTGAGTATTTTAATTAAAC+AGG | - | chr1.2:51665744-51665763 | None:intergenic | 15.0% |
| !! | CAAAACATGTATTGAATTAA+AGG | - | chr1.2:51665535-51665554 | None:intergenic | 20.0% |
| !!! | ACAATTGTTTGTTGAATTTA+TGG | + | chr1.2:51664341-51664360 | MS.gene058994:intron | 20.0% |
| !!! | ATGTTTTTTCAAAATAATGC+AGG | - | chr1.2:51665066-51665085 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGTTACTCTGAA+TGG | + | chr1.2:51665857-51665876 | MS.gene058994:intron | 20.0% |
| !!! | TGTTTTTTCAAAATAATGCA+GGG | - | chr1.2:51665065-51665084 | None:intergenic | 20.0% |
| ! | AGTCTTAACGAAATATGTTT+GGG | + | chr1.2:51665944-51665963 | MS.gene058994:intron | 25.0% |
| ! | CAATATATTCTATGTATCGA+AGG | + | chr1.2:51665682-51665701 | MS.gene058994:intron | 25.0% |
| ! | TTCTCAAATATTATCAGTGT+CGG | + | chr1.2:51665356-51665375 | MS.gene058994:intron | 25.0% |
| !! | TAGTCTTAACGAAATATGTT+TGG | + | chr1.2:51665943-51665962 | MS.gene058994:intron | 25.0% |
| !! | TTCATATTTTGTCTGCTTAT+TGG | + | chr1.2:51665896-51665915 | MS.gene058994:intron | 25.0% |
| !!! | ACGTCATTTGCTATAAAAAA+TGG | - | chr1.2:51664876-51664895 | None:intergenic | 25.0% |
| ACTTGTATTCAAATCTGGTA+TGG | + | chr1.2:51664707-51664726 | MS.gene058994:CDS | 30.0% | |
| ATATGTGAAATGGAGTATAC+AGG | + | chr1.2:51665487-51665506 | MS.gene058994:intron | 30.0% | |
| ATTGAATACACATACACAGA+TGG | + | chr1.2:51664378-51664397 | MS.gene058994:intron | 30.0% | |
| ATTTGAATACAAGTGTCTGA+AGG | - | chr1.2:51664701-51664720 | None:intergenic | 30.0% | |
| GAACAAACTTGATTATGTCT+TGG | + | chr1.2:51664644-51664663 | MS.gene058994:CDS | 30.0% | |
| GTAGATCATGTTTAGATCAT+TGG | + | chr1.2:51665164-51665183 | MS.gene058994:intron | 30.0% | |
| TGTTTGTATTCACCATGAAT+TGG | + | chr1.2:51665449-51665468 | MS.gene058994:intron | 30.0% | |
| TTGAATACACATACACAGAT+GGG | + | chr1.2:51664379-51664398 | MS.gene058994:intron | 30.0% | |
| ! | ACAGGAAAGTATATGTGAAA+TGG | + | chr1.2:51665477-51665496 | MS.gene058994:intron | 30.0% |
| !! | GATTATGTTTTTCTTGGTGT+CGG | + | chr1.2:51665275-51665294 | MS.gene058994:intron | 30.0% |
| !! | GCTTATTTGAGTTTGTCTTT+TGG | - | chr1.2:51665029-51665048 | None:intergenic | 30.0% |
| !!! | GTAACTTGCATTTTTTCTAG+CGG | + | chr1.2:51665640-51665659 | MS.gene058994:intron | 30.0% |
| !!! | GTTTGGTTTGCATTTTTGTA+TGG | + | chr1.2:51665201-51665220 | MS.gene058994:intron | 30.0% |
| !!! | TACTCAAATGTCACTGATTT+TGG | + | chr1.2:51665756-51665775 | MS.gene058994:intron | 30.0% |
| !!! | TATTTTTGGTTTCATAGGGT+TGG | + | chr1.2:51665982-51666001 | MS.gene058994:intron | 30.0% |
| !!! | TTCCTGTTTTTTCCAATTCA+TGG | - | chr1.2:51665464-51665483 | None:intergenic | 30.0% |
| AAGATAGATACTCACAGTTC+CGG | - | chr1.2:51664280-51664299 | None:intergenic | 35.0% | |
| ACAGATTCCTTGCATTGTTA+CGG | - | chr1.2:51664533-51664552 | None:intergenic | 35.0% | |
| CACCAAGAAAAACATAATCC+AGG | - | chr1.2:51665274-51665293 | None:intergenic | 35.0% | |
| CACCATGAATTGGAAAAAAC+AGG | + | chr1.2:51665459-51665478 | MS.gene058994:intron | 35.0% | |
| CAGACACTTGTATTCAAATC+TGG | + | chr1.2:51664702-51664721 | MS.gene058994:CDS | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr1.2:51665039-51665058 | MS.gene058994:intron | 35.0% | |
| TGGTTGTCTCTAACAATGTT+TGG | + | chr1.2:51665184-51665203 | MS.gene058994:intron | 35.0% | |
| TTCTATGTATCGAAGGTAGT+AGG | + | chr1.2:51665689-51665708 | MS.gene058994:intron | 35.0% | |
| TTGAGAAGGATGTTTAAGCA+TGG | + | chr1.2:51664603-51664622 | MS.gene058994:CDS | 35.0% | |
| ! | CTCCTGGATTATGTTTTTCT+TGG | + | chr1.2:51665269-51665288 | MS.gene058994:intron | 35.0% |
| ! | TCCATTGTTCAAGTAATGGA+GGG | + | chr1.2:51665718-51665737 | MS.gene058994:intron | 35.0% |
| ! | TGGTTAAAGTTGCTTTCTAC+CGG | + | chr1.2:51664258-51664277 | MS.gene058994:CDS | 35.0% |
| !! | TTCAAGTTGCCAGCAAAAAT+GGG | - | chr1.2:51665571-51665590 | None:intergenic | 35.0% |
| !!! | ATTTTTTCTAGCGGCTGTTA+TGG | + | chr1.2:51665649-51665668 | MS.gene058994:intron | 35.0% |
| AAAATAATGCAGGGCCTGTT+TGG | - | chr1.2:51665056-51665075 | None:intergenic | 40.0% | |
| AAGAACCCTAGCATGATGAA+TGG | - | chr1.2:51664739-51664758 | None:intergenic | 40.0% | |
| ATCATGCTAGGGTTCTTATC+AGG | + | chr1.2:51664742-51664761 | MS.gene058994:intron | 40.0% | |
| CAAGTCCATTCATCATGCTA+GGG | + | chr1.2:51664731-51664750 | MS.gene058994:CDS | 40.0% | |
| CCATTACTTGAACAATGGAG+AGG | - | chr1.2:51665717-51665736 | None:intergenic | 40.0% | |
| CCTCTCCATTGTTCAAGTAA+TGG | + | chr1.2:51665714-51665733 | MS.gene058994:intron | 40.0% | |
| CTCCATTGTTCAAGTAATGG+AGG | + | chr1.2:51665717-51665736 | MS.gene058994:intron | 40.0% | |
| GTGAATGAAGTGAAGAGAGA+TGG | + | chr1.2:51665823-51665842 | MS.gene058994:intron | 40.0% | |
| TCCAAACGTTCCTTCTCATA+AGG | - | chr1.2:51664429-51664448 | None:intergenic | 40.0% | |
| TCCTTATGAGAAGGAACGTT+TGG | + | chr1.2:51664425-51664444 | MS.gene058994:CDS | 40.0% | |
| TCCTTGCATTGTTACGGATA+CGG | - | chr1.2:51664527-51664546 | None:intergenic | 40.0% | |
| TGAATACAAGTGTCTGAAGG+CGG | - | chr1.2:51664698-51664717 | None:intergenic | 40.0% | |
| ! | TCAAGTTGCCAGCAAAAATG+GGG | - | chr1.2:51665570-51665589 | None:intergenic | 40.0% |
| ! | TTTGGTTTCATAGGGTTGGA+AGG | + | chr1.2:51665986-51666005 | MS.gene058994:intron | 40.0% |
| !! | GACTAAAGCTACTGCTTTTC+TGG | + | chr1.2:51665596-51665615 | MS.gene058994:intron | 40.0% |
| !! | GTTCAAGTTGCCAGCAAAAA+TGG | - | chr1.2:51665572-51665591 | None:intergenic | 40.0% |
| AACCCTCGTCGTATCTTTGA+GGG | + | chr1.2:51664570-51664589 | MS.gene058994:CDS | 45.0% | |
| CCAAGTCCATTCATCATGCT+AGG | + | chr1.2:51664730-51664749 | MS.gene058994:CDS | 45.0% | |
| GCCCTCCATTACTTGAACAA+TGG | - | chr1.2:51665722-51665741 | None:intergenic | 45.0% | |
| TGCAAGGAATCTGTTGACCT+TGG | + | chr1.2:51664539-51664558 | MS.gene058994:CDS | 45.0% | |
| TTATCAGGCAGAGACACATC+AGG | + | chr1.2:51664757-51664776 | MS.gene058994:intron | 45.0% | |
| ! | CCTAGCATGATGAATGGACT+TGG | - | chr1.2:51664733-51664752 | None:intergenic | 45.0% |
| ! | TTTGGATGCTGAGTTGAAGC+TGG | + | chr1.2:51664443-51664462 | MS.gene058994:CDS | 45.0% |
| !! | TGCTATTGCCCCATTTTTGC+TGG | + | chr1.2:51665559-51665578 | MS.gene058994:intron | 45.0% |
| !!! | CTGCTTTTCTGGCTTTTCTC+TGG | + | chr1.2:51665607-51665626 | MS.gene058994:intron | 45.0% |
| !! | AAATAAATAAATAAACATTA+GGG | - | chr1.2:51665924-51665943 | None:intergenic | 5.0% |
| !! | TAAATAAATAAATAAACATT+AGG | - | chr1.2:51665925-51665944 | None:intergenic | 5.0% |
| AATGCAGGGCCTGTTTGGAT+TGG | - | chr1.2:51665051-51665070 | None:intergenic | 50.0% | |
| ACATCCCATCCTTCATGGTG+AGG | + | chr1.2:51666019-51666038 | MS.gene058994:CDS | 50.0% | |
| ACGAGGGTTCTTCTCATCCA+AGG | - | chr1.2:51664559-51664578 | None:intergenic | 50.0% | |
| CAACCCTCACCATGAAGGAT+GGG | - | chr1.2:51666026-51666045 | None:intergenic | 50.0% | |
| CACCCTCAAAGATACGACGA+GGG | - | chr1.2:51664575-51664594 | None:intergenic | 50.0% | |
| CATCCCATCCTTCATGGTGA+GGG | + | chr1.2:51666020-51666039 | MS.gene058994:CDS | 50.0% | |
| CTATGAAGCACGAACACTCC+TGG | + | chr1.2:51665253-51665272 | MS.gene058994:intron | 50.0% | |
| GAACCCTCGTCGTATCTTTG+AGG | + | chr1.2:51664569-51664588 | MS.gene058994:CDS | 50.0% | |
| GCCGTATCCGTAACAATGCA+AGG | + | chr1.2:51664523-51664542 | MS.gene058994:CDS | 50.0% | |
| GGTGAACATCCCATCCTTCA+TGG | + | chr1.2:51666014-51666033 | MS.gene058994:CDS | 50.0% | |
| GTTTCATAGGGTTGGAAGGC+AGG | + | chr1.2:51665990-51666009 | MS.gene058994:intron | 50.0% | |
| TCAACCCTCACCATGAAGGA+TGG | - | chr1.2:51666027-51666046 | None:intergenic | 50.0% | |
| TCACCCTCAAAGATACGACG+AGG | - | chr1.2:51664576-51664595 | None:intergenic | 50.0% | |
| TCCTTCTCATAAGGACGACG+CGG | - | chr1.2:51664420-51664439 | None:intergenic | 50.0% | |
| TTGAAGCTGGTCGGAGAGTA+CGG | + | chr1.2:51664456-51664475 | MS.gene058994:CDS | 50.0% | |
| ! | AGGGTGAAGCGCTATTGAGA+AGG | + | chr1.2:51664589-51664608 | MS.gene058994:CDS | 50.0% |
| ! | GATGCTGAGTTGAAGCTGGT+CGG | + | chr1.2:51664447-51664466 | MS.gene058994:CDS | 50.0% |
| TCATAGGGTTGGAAGGCAGG+TGG | + | chr1.2:51665993-51666012 | MS.gene058994:intron | 55.0% | |
| ! | AGTACGGTCTTCGGTGCAAG+AGG | + | chr1.2:51664472-51664491 | MS.gene058994:CDS | 55.0% |
| ! | GTACGGTCTTCGGTGCAAGA+GGG | + | chr1.2:51664473-51664492 | MS.gene058994:CDS | 55.0% |
| ! | TGGTCGGAGAGTACGGTCTT+CGG | + | chr1.2:51664463-51664482 | MS.gene058994:CDS | 55.0% |
| ! | TTCGGTGCAAGAGGGAGCTT+TGG | + | chr1.2:51664481-51664500 | MS.gene058994:CDS | 55.0% |
| !! | GTGCAAGAGGGAGCTTTGGA+GGG | + | chr1.2:51664485-51664504 | MS.gene058994:CDS | 55.0% |
| GCACCTATGACGCACAGACG+CGG | - | chr1.2:51665392-51665411 | None:intergenic | 60.0% | |
| GCCGCGTCGTCCTTATGAGA+AGG | + | chr1.2:51664416-51664435 | MS.gene058994:CDS | 60.0% | |
| TGTCCGCGTCTGTGCGTCAT+AGG | + | chr1.2:51665386-51665405 | MS.gene058994:intron | 60.0% | |
| ! | GGTGCAAGAGGGAGCTTTGG+AGG | + | chr1.2:51664484-51664503 | MS.gene058994:CDS | 60.0% |
| !! | TCTTGGTGTCGGACACGCGT+CGG | + | chr1.2:51665286-51665305 | MS.gene058994:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 51664257 | 51666046 | 51664257 | ID=MS.gene058994 |
| chr1.2 | mRNA | 51664257 | 51666046 | 51664257 | ID=MS.gene058994.t1;Parent=MS.gene058994 |
| chr1.2 | exon | 51664257 | 51664284 | 51664257 | ID=MS.gene058994.t1.exon1;Parent=MS.gene058994.t1 |
| chr1.2 | CDS | 51664257 | 51664284 | 51664257 | ID=cds.MS.gene058994.t1;Parent=MS.gene058994.t1 |
| chr1.2 | exon | 51664397 | 51664752 | 51664397 | ID=MS.gene058994.t1.exon2;Parent=MS.gene058994.t1 |
| chr1.2 | CDS | 51664397 | 51664752 | 51664397 | ID=cds.MS.gene058994.t1;Parent=MS.gene058994.t1 |
| chr1.2 | exon | 51665999 | 51666046 | 51665999 | ID=MS.gene058994.t1.exon3;Parent=MS.gene058994.t1 |
| chr1.2 | CDS | 51665999 | 51666046 | 51665999 | ID=cds.MS.gene058994.t1;Parent=MS.gene058994.t1 |
| Gene Sequence |
| Protein sequence |
