AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24679

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24679.t1 MTR_1g061970 97.260 146 4 0 1 146 346 491 1.12e-99 295
MS.gene24679.t1 MTR_4g049910 76.027 146 31 1 1 146 309 450 8.45e-75 229
MS.gene24679.t1 MTR_0427s0010 72.727 143 39 0 4 146 83 225 1.41e-70 212
MS.gene24679.t1 MTR_2g039960 44.715 123 53 3 11 133 304 411 1.47e-27 105
MS.gene24679.t1 MTR_8g018400 45.763 118 49 3 11 128 304 406 3.36e-27 104
MS.gene24679.t1 MTR_2g099620 44.068 118 51 3 11 128 288 390 6.84e-26 101
MS.gene24679.t1 MTR_4g125970 43.089 123 55 3 11 133 304 411 7.47e-26 101
MS.gene24679.t1 MTR_2g099620 44.068 118 51 3 11 128 304 406 7.47e-26 101
MS.gene24679.t1 MTR_2g438110 44.068 118 51 2 10 127 296 398 8.34e-26 100
MS.gene24679.t1 MTR_4g125970 43.089 123 55 3 11 133 321 428 8.78e-26 101
MS.gene24679.t1 MTR_7g076800 38.583 127 63 2 1 127 392 503 3.81e-22 91.7
MS.gene24679.t1 MTR_7g076830 38.583 127 63 2 1 127 394 505 4.10e-22 91.3
MS.gene24679.t1 MTR_7g076820 37.795 127 64 2 1 127 401 512 5.78e-22 90.9
MS.gene24679.t1 MTR_4g010565 34.884 129 70 1 2 130 381 495 3.48e-21 88.6
MS.gene24679.t1 MTR_1g012420 34.884 129 70 1 2 130 304 418 1.19e-20 87.0
MS.gene24679.t1 MTR_8g018370 40.678 118 55 2 11 128 215 317 1.20e-19 83.2
MS.gene24679.t1 MTR_3g107420 31.783 129 74 1 2 130 304 418 2.66e-19 83.2
MS.gene24679.t1 MTR_2g007000 38.679 106 51 1 2 107 766 857 2.83e-18 80.5
MS.gene24679.t1 MTR_1g026830 33.333 129 68 3 2 130 413 523 1.24e-15 72.8
MS.gene24679.t1 MTR_1g095810 33.333 129 68 3 2 130 411 521 5.38e-15 71.2
MS.gene24679.t1 MTR_4g105100 35.106 94 47 1 10 103 470 549 2.27e-14 69.3
MS.gene24679.t1 MTR_6g005550 33.333 108 57 2 11 118 433 525 3.65e-14 68.9
MS.gene24679.t1 MTR_7g100820 43.023 86 35 1 13 98 399 470 5.20e-14 68.2
MS.gene24679.t1 MTR_3g083690 37.895 95 42 2 11 102 429 509 7.56e-14 67.8
MS.gene24679.t1 MTR_6g082080 31.746 126 71 2 1 126 265 375 9.44e-14 67.4
MS.gene24679.t1 MTR_2g100230 37.234 94 45 1 10 103 364 443 1.23e-13 67.0
MS.gene24679.t1 MTR_7g056830 31.746 126 71 2 1 126 265 375 1.42e-13 67.0
MS.gene24679.t1 MTR_1g054630 37.500 96 43 2 10 102 436 517 1.77e-13 66.6
MS.gene24679.t1 MTR_3g449250 30.833 120 68 2 15 134 362 466 1.82e-13 66.6
MS.gene24679.t1 MTR_3g449250 30.833 120 68 2 15 134 362 466 1.97e-13 66.6
MS.gene24679.t1 MTR_5g090120 31.092 119 67 2 15 133 353 456 4.79e-13 65.5
MS.gene24679.t1 MTR_1g046570 37.705 122 55 7 11 128 287 391 9.60e-13 64.7
MS.gene24679.t1 MTR_5g027840 37.113 97 47 1 2 98 368 450 1.73e-12 63.9
MS.gene24679.t1 MTR_2g032630 33.043 115 55 4 11 125 764 856 2.29e-12 63.5
MS.gene24679.t1 MTR_4g114120 34.021 97 50 1 2 98 417 499 2.40e-12 63.5
MS.gene24679.t1 MTR_7g109720 35.417 96 47 2 10 104 500 581 3.09e-12 63.2
MS.gene24679.t1 MTR_4g134170 34.615 104 54 1 2 105 565 654 3.46e-12 63.2
MS.gene24679.t1 MTR_2g063080 33.333 111 59 2 10 120 430 525 4.99e-12 62.8
MS.gene24679.t1 MTR_3g467550 32.174 115 63 2 4 118 356 455 5.66e-12 62.4
MS.gene24679.t1 MTR_3g467550 32.174 115 63 2 4 118 387 486 5.72e-12 62.4
MS.gene24679.t1 MTR_6g005320 34.375 96 49 1 10 105 533 614 7.63e-12 62.0
MS.gene24679.t1 MTR_4g079320 32.653 98 52 1 10 107 285 368 1.26e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24679.t1 AT3G53110 64.384 146 43 3 2 145 356 494 1.68e-55 181
MS.gene24679.t1 AT1G72730 42.373 118 53 3 11 128 305 407 5.20e-26 101
MS.gene24679.t1 AT3G19760 44.068 118 51 2 10 127 298 400 8.37e-26 100
MS.gene24679.t1 AT3G13920 43.590 117 51 3 11 127 293 394 2.92e-25 99.4
MS.gene24679.t1 AT3G13920 43.590 117 51 3 11 127 298 399 3.05e-25 99.4
MS.gene24679.t1 AT3G13920 43.590 117 51 3 11 127 303 404 3.29e-25 99.4
MS.gene24679.t1 AT1G54270 41.525 118 54 2 11 128 298 400 1.35e-24 97.8
MS.gene24679.t1 AT1G54270 42.373 118 53 3 11 128 303 405 1.50e-24 97.8
MS.gene24679.t1 AT3G13920 46.154 104 41 3 11 114 303 391 7.05e-23 93.2
MS.gene24679.t1 AT3G13920 46.154 104 41 3 11 114 307 395 8.42e-23 92.8
MS.gene24679.t1 AT1G51380 41.525 118 54 3 10 127 285 387 2.80e-22 91.3
MS.gene24679.t1 AT4G00660 38.281 128 64 2 1 128 383 495 4.16e-22 91.3
MS.gene24679.t1 AT4G00660 38.281 128 64 2 1 128 383 495 4.16e-22 91.3
MS.gene24679.t1 AT5G11170 34.109 129 71 1 2 130 221 335 1.24e-21 89.0
MS.gene24679.t1 AT5G11170 34.109 129 71 1 2 130 304 418 2.53e-21 89.0
MS.gene24679.t1 AT5G11200 34.109 129 71 1 2 130 304 418 2.53e-21 89.0
MS.gene24679.t1 AT5G11200 34.109 129 71 1 2 130 345 459 3.25e-21 89.0
MS.gene24679.t1 AT5G11200 34.109 129 71 1 2 130 363 477 5.00e-21 88.2
MS.gene24679.t1 AT3G61240 37.008 127 65 2 1 127 376 487 1.58e-20 87.0
MS.gene24679.t1 AT3G61240 37.008 127 65 2 1 127 376 487 1.58e-20 87.0
MS.gene24679.t1 AT2G45810 36.220 127 66 2 1 127 406 517 9.84e-20 84.7
MS.gene24679.t1 AT1G20920 35.577 104 53 1 2 105 792 881 9.96e-17 76.3
MS.gene24679.t1 AT1G20920 35.577 104 53 1 2 105 792 881 9.96e-17 76.3
MS.gene24679.t1 AT1G20920 35.577 104 53 1 2 105 792 881 9.96e-17 76.3
MS.gene24679.t1 AT1G20920 35.577 104 53 1 2 105 792 881 9.96e-17 76.3
MS.gene24679.t1 AT1G20920 35.577 104 53 1 2 105 792 881 9.96e-17 76.3
MS.gene24679.t1 AT1G20920 35.577 104 53 1 2 105 792 881 9.96e-17 76.3
MS.gene24679.t1 AT1G20920 35.922 103 52 1 2 104 454 542 1.41e-16 75.9
MS.gene24679.t1 AT3G22310 33.333 123 67 2 11 133 385 492 1.74e-16 75.5
MS.gene24679.t1 AT3G22310 33.333 123 67 2 11 133 385 492 1.75e-16 75.5
MS.gene24679.t1 AT5G51280 34.109 129 67 3 2 130 413 523 1.02e-15 73.2
MS.gene24679.t1 AT4G33370 34.884 129 66 3 2 130 364 474 4.07e-15 71.6
MS.gene24679.t1 AT3G01540 35.185 108 55 3 11 118 427 519 1.00e-14 70.5
MS.gene24679.t1 AT3G01540 35.185 108 55 3 11 118 427 519 1.00e-14 70.5
MS.gene24679.t1 AT3G01540 35.185 108 55 3 11 118 427 519 1.00e-14 70.5
MS.gene24679.t1 AT3G01540 35.185 108 55 3 11 118 427 519 1.00e-14 70.5
MS.gene24679.t1 AT3G22330 30.081 123 71 2 11 133 373 480 1.74e-14 69.7
MS.gene24679.t1 AT1G55150 34.211 114 59 2 10 121 393 492 1.86e-14 69.7
MS.gene24679.t1 AT2G42520 39.583 96 41 2 10 102 442 523 2.10e-14 69.3
MS.gene24679.t1 AT2G42520 39.583 96 41 2 10 102 442 523 2.10e-14 69.3
MS.gene24679.t1 AT2G42520 39.583 96 41 2 10 102 442 523 2.10e-14 69.3
MS.gene24679.t1 AT5G63120 35.106 94 47 1 10 103 434 513 2.38e-14 69.3
MS.gene24679.t1 AT5G14610 34.259 108 56 3 11 118 299 391 2.68e-14 69.3
MS.gene24679.t1 AT5G14610 34.259 108 56 3 11 118 299 391 2.68e-14 69.3
MS.gene24679.t1 AT5G14610 34.259 108 56 3 11 118 430 522 2.79e-14 69.3
MS.gene24679.t1 AT5G14610 34.259 108 56 3 11 118 430 522 2.79e-14 69.3
MS.gene24679.t1 AT5G14610 34.259 108 56 3 11 118 438 530 2.79e-14 69.3
MS.gene24679.t1 AT5G14610 34.259 108 56 3 11 118 498 590 2.83e-14 69.3
MS.gene24679.t1 AT1G55150 33.333 117 62 2 10 124 368 470 1.02e-13 67.4
MS.gene24679.t1 AT1G12770 33.929 112 59 2 10 121 431 527 1.82e-13 66.6
MS.gene24679.t1 AT1G12770 33.929 112 59 2 10 121 431 527 1.82e-13 66.6
MS.gene24679.t1 AT3G58570 37.500 96 43 2 10 102 429 510 2.04e-13 66.6
MS.gene24679.t1 AT1G31970 37.113 97 47 1 2 98 382 464 3.23e-13 66.2
MS.gene24679.t1 AT5G60990 32.000 125 70 2 2 126 276 385 3.63e-13 65.9
MS.gene24679.t1 AT1G16280 38.136 118 54 3 25 138 341 443 6.35e-13 65.1
MS.gene24679.t1 AT3G58510 37.895 95 42 2 11 102 433 513 6.49e-13 65.1
MS.gene24679.t1 AT3G58510 37.895 95 42 2 11 102 433 513 6.49e-13 65.1
MS.gene24679.t1 AT3G58510 37.895 95 42 2 11 102 433 513 6.49e-13 65.1
MS.gene24679.t1 AT3G06480 37.500 96 45 2 16 111 709 789 8.03e-13 65.1
MS.gene24679.t1 AT3G09720 42.169 83 34 1 16 98 410 478 8.74e-13 64.7
MS.gene24679.t1 AT3G09720 42.169 83 34 1 16 98 410 478 8.74e-13 64.7
MS.gene24679.t1 AT5G26742 29.167 120 70 2 15 134 286 390 1.20e-12 64.3
MS.gene24679.t1 AT5G26742 29.167 120 70 2 15 134 379 483 1.22e-12 64.3
MS.gene24679.t1 AT5G26742 29.167 120 70 2 15 134 379 483 1.22e-12 64.3
MS.gene24679.t1 AT4G15850 33.333 105 55 2 18 122 370 459 5.27e-12 62.4
MS.gene24679.t1 AT2G33730 32.692 104 56 1 2 105 592 681 1.09e-11 61.6
MS.gene24679.t1 AT3G09620 38.272 81 36 1 25 105 653 719 1.15e-11 61.6
MS.gene24679.t1 AT3G09620 38.272 81 36 1 25 105 654 720 1.18e-11 61.6
MS.gene24679.t1 AT2G47330 33.684 95 48 2 11 104 498 578 1.66e-11 61.2

Find 35 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATTGTTTAGGTTAATT+TGG 0.187218 1.1:+46857918 MS.gene24679:intron
GTTGGTAGGGCTGGGCGATT+TGG 0.187734 1.1:+46858030 MS.gene24679:CDS
TTGCACAGGGTTGGTAGGGC+TGG 0.257464 1.1:+46858021 MS.gene24679:CDS
CATAATCAGGCTCTTGTTCT+TGG 0.272275 1.1:-46857990 None:intergenic
CATCCCTTTCACCACATATC+AGG 0.299190 1.1:-46859103 None:intergenic
CACAAAGCTCTTGTTGATTT+AGG 0.301798 1.1:+46857670 MS.gene24679:CDS
TTGGTAGGGCTGGGCGATTT+GGG 0.326658 1.1:+46858031 MS.gene24679:CDS
TGCAAATACACCTCATAATC+AGG 0.379608 1.1:-46858003 None:intergenic
TGCACAGGGTTGGTAGGGCT+GGG 0.404676 1.1:+46858022 MS.gene24679:CDS
GGCTGGGCGATTTGGGCGCA+AGG 0.424800 1.1:+46858038 MS.gene24679:CDS
CCGTGGCTTTGATCAGCAAC+AGG 0.433702 1.1:+46857804 MS.gene24679:CDS
CAGGCTCTTGTTCTTGGCCA+CGG 0.435431 1.1:-46857984 None:intergenic
AAAGTTGCTCTTAAAGAAGC+TGG 0.440458 1.1:+46859333 MS.gene24679:CDS
TGTATTTGCACAGGGTTGGT+AGG 0.446992 1.1:+46858016 MS.gene24679:CDS
ATGGTCAAGAGCACCTTGTA+TGG 0.458366 1.1:-46857707 None:intergenic
GTATTTGCACAGGGTTGGTA+GGG 0.470296 1.1:+46858017 MS.gene24679:CDS
AGGCTCTTGTTCTTGGCCAC+GGG 0.481618 1.1:-46857983 None:intergenic
ATCGTCAAAGAGTTCAAAGA+TGG 0.487343 1.1:+46857745 MS.gene24679:CDS
ATTATGAGGTGTATTTGCAC+AGG 0.499481 1.1:+46858007 MS.gene24679:CDS
TCTTGTTGATTTAGGCTATG+AGG 0.514061 1.1:+46857678 MS.gene24679:CDS
GTTCAAAGATGGTTTGACTC+AGG 0.527101 1.1:+46857756 MS.gene24679:CDS
AGAACAAGAGCCTGATTATG+AGG 0.530550 1.1:+46857993 MS.gene24679:CDS
TAACCTGATATGTGGTGAAA+GGG 0.534784 1.1:+46859100 MS.gene24679:CDS
TATGAGGTCACTTCCATACA+AGG 0.536146 1.1:+46857694 MS.gene24679:CDS
TTAACCTGATATGTGGTGAA+AGG 0.547238 1.1:+46859099 MS.gene24679:CDS
CGATCTTGTCTCTATCATCA+TGG 0.553290 1.1:-46857726 None:intergenic
TCGACTGATGTTCTTGCCCG+TGG 0.555694 1.1:+46857787 MS.gene24679:CDS
GAGGTGTATTTGCACAGGGT+TGG 0.581567 1.1:+46858012 MS.gene24679:CDS
CCTGTTGCTGATCAAAGCCA+CGG 0.583710 1.1:-46857804 None:intergenic
GCTGGGCGATTTGGGCGCAA+GGG 0.595158 1.1:+46858039 MS.gene24679:CDS
CTGTTGCTGATCAAAGCCAC+GGG 0.620873 1.1:-46857803 None:intergenic
TACTCAGCAGAGTACTTCAG+TGG 0.636769 1.1:-46857958 None:intergenic
GCTGTATTTAACCTGATATG+TGG 0.649135 1.1:+46859092 MS.gene24679:CDS
TTATGAGGTGTATTTGCACA+GGG 0.652424 1.1:+46858008 MS.gene24679:CDS
TACTCTGCTGAGTACACCCG+TGG 0.681522 1.1:+46857967 MS.gene24679:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCTAACAATTATAATATAT+GGG - chr1.1:46858278-46858297 None:intergenic 15.0%
!! TTAGAAAATGCTAAAAATAT+AGG - chr1.1:46858967-46858986 None:intergenic 15.0%
!! AATATTTAAAGATTCCACAT+TGG + chr1.1:46858668-46858687 MS.gene24679:intron 20.0%
!! AATGTGAGATATGTAATATT+TGG - chr1.1:46858233-46858252 None:intergenic 20.0%
!! AGATAGATTAGAGAAATAAT+AGG - chr1.1:46858394-46858413 None:intergenic 20.0%
!! GCTCTAACAATTATAATATA+TGG - chr1.1:46858279-46858298 None:intergenic 20.0%
!! TCTTGTAATTATTCTCATTT+AGG + chr1.1:46858600-46858619 MS.gene24679:intron 20.0%
!! TTGTTTCATTTGATTGAATA+GGG + chr1.1:46859069-46859088 MS.gene24679:intron 20.0%
!! TTTGTTTCATTTGATTGAAT+AGG + chr1.1:46859068-46859087 MS.gene24679:intron 20.0%
!!! TCAAAGATTGAAAAACATTT+TGG + chr1.1:46859137-46859156 MS.gene24679:CDS 20.0%
! AATAACACCATCAAAAGATT+TGG - chr1.1:46858313-46858332 None:intergenic 25.0%
! AATTAACCTAAACAATGCAA+TGG - chr1.1:46857918-46857937 None:intergenic 25.0%
! ATAACACCATCAAAAGATTT+GGG - chr1.1:46858312-46858331 None:intergenic 25.0%
! CTAGACAAAGTGTATAAATA+TGG + chr1.1:46858475-46858494 MS.gene24679:intron 25.0%
! GAAACAAATGTAAGAAAACT+TGG - chr1.1:46859056-46859075 None:intergenic 25.0%
! TACTCTATCGTTATAAGATT+TGG + chr1.1:46858709-46858728 MS.gene24679:intron 25.0%
! TGCATGAAGAAAAAAAAGAA+AGG - chr1.1:46857890-46857909 None:intergenic 25.0%
! TGTTTCATTTGATTGAATAG+GGG + chr1.1:46859070-46859089 MS.gene24679:intron 25.0%
!! AATCATTTTGTTAATGTCAC+TGG + chr1.1:46859277-46859296 MS.gene24679:intron 25.0%
!! ATTTTACAACCAATGAAACA+TGG - chr1.1:46858361-46858380 None:intergenic 25.0%
!! TTCATTGGTTGTAAAATAGA+TGG + chr1.1:46858364-46858383 MS.gene24679:intron 25.0%
!! TTGCATTGTTTAGGTTAATT+TGG + chr1.1:46857918-46857937 MS.gene24679:intron 25.0%
!! TTTCAAGCTTTTTGTATATG+TGG + chr1.1:46858421-46858440 MS.gene24679:intron 25.0%
!!! ATGTTTTTCAATCTTTGACA+AGG - chr1.1:46859135-46859154 None:intergenic 25.0%
!!! GAGTAAAATTTTGACATCAA+TGG - chr1.1:46858817-46858836 None:intergenic 25.0%
AAATAACGTGCATAACTTAC+TGG - chr1.1:46859015-46859034 None:intergenic 30.0%
AATAACGTGCATAACTTACT+GGG - chr1.1:46859014-46859033 None:intergenic 30.0%
TAACACCATCAAAAGATTTG+GGG - chr1.1:46858311-46858330 None:intergenic 30.0%
TATAATATATGGGAAGAGCA+TGG - chr1.1:46858268-46858287 None:intergenic 30.0%
TATTGATAGAAACCCAAGAA+CGG - chr1.1:46858652-46858671 None:intergenic 30.0%
TGTATAAATATGGTTGTGTC+TGG + chr1.1:46858485-46858504 MS.gene24679:intron 30.0%
TTCAACTAGATATATGGCTA+GGG + chr1.1:46858875-46858894 MS.gene24679:intron 30.0%
TTCAGCATAATGCAGAAAAT+CGG + chr1.1:46859221-46859240 MS.gene24679:intron 30.0%
! ATTTTATACTATCCCGTTCT+TGG + chr1.1:46858636-46858655 MS.gene24679:intron 30.0%
! ATTTTCTGCATTATGCTGAA+TGG - chr1.1:46859221-46859240 None:intergenic 30.0%
! CTTATAACGATAGAGTACTT+TGG - chr1.1:46858706-46858725 None:intergenic 30.0%
! TTAGCGTACCTCTTTTATAT+AGG - chr1.1:46859165-46859184 None:intergenic 30.0%
! TTTTATACTATCCCGTTCTT+GGG + chr1.1:46858637-46858656 MS.gene24679:intron 30.0%
! TTTTGGCACCTATATAAAAG+AGG + chr1.1:46859154-46859173 MS.gene24679:CDS 30.0%
!! ACGCTAATTGATAATGTACT+TGG + chr1.1:46859178-46859197 MS.gene24679:intron 30.0%
!!! GGGATTTTTTATAAAGGCTT+GGG + chr1.1:46858897-46858916 MS.gene24679:intron 30.0%
AAAGTTGCTCTTAAAGAAGC+TGG + chr1.1:46859333-46859352 MS.gene24679:CDS 35.0%
AACCTAAACAATGCAATGGA+AGG - chr1.1:46857914-46857933 None:intergenic 35.0%
ACCCACTTCAACTAGATATA+TGG + chr1.1:46858869-46858888 MS.gene24679:intron 35.0%
AGCCATATATCTAGTTGAAG+TGG - chr1.1:46858874-46858893 None:intergenic 35.0%
ATAACGTGCATAACTTACTG+GGG - chr1.1:46859013-46859032 None:intergenic 35.0%
ATCCTTCCATTGCATTGTTT+AGG + chr1.1:46857909-46857928 MS.gene24679:intron 35.0%
ATCGTCAAAGAGTTCAAAGA+TGG + chr1.1:46857745-46857764 MS.gene24679:CDS 35.0%
ATTATGAGGTGTATTTGCAC+AGG + chr1.1:46858007-46858026 MS.gene24679:CDS 35.0%
ATTGATAGAAACCCAAGAAC+GGG - chr1.1:46858651-46858670 None:intergenic 35.0%
ATTTCTGTTAGGAACCTTGT+GGG + chr1.1:46858513-46858532 MS.gene24679:intron 35.0%
CTTCAACTAGATATATGGCT+AGG + chr1.1:46858874-46858893 MS.gene24679:intron 35.0%
GCCATATATCTAGTTGAAGT+GGG - chr1.1:46858873-46858892 None:intergenic 35.0%
GCTGTATTTAACCTGATATG+TGG + chr1.1:46859092-46859111 MS.gene24679:CDS 35.0%
GTTAGGCATAAATTCCAACA+TGG + chr1.1:46858758-46858777 MS.gene24679:intron 35.0%
TAACCTGATATGTGGTGAAA+GGG + chr1.1:46859100-46859119 MS.gene24679:CDS 35.0%
TAGGCCAAAGAAAATACCAA+AGG - chr1.1:46858948-46858967 None:intergenic 35.0%
TCAACTAGATATATGGCTAG+GGG + chr1.1:46858876-46858895 MS.gene24679:intron 35.0%
TGCAAATACACCTCATAATC+AGG - chr1.1:46858006-46858025 None:intergenic 35.0%
TTAACCTGATATGTGGTGAA+AGG + chr1.1:46859099-46859118 MS.gene24679:CDS 35.0%
TTACAACCAATGAAACATGG+TGG - chr1.1:46858358-46858377 None:intergenic 35.0%
TTATGAGGTGTATTTGCACA+GGG + chr1.1:46858008-46858027 MS.gene24679:CDS 35.0%
TTGTTAATGTCACTGGATGT+AGG + chr1.1:46859284-46859303 MS.gene24679:intron 35.0%
! GATAAGCTCTAATACCATGT+TGG - chr1.1:46858775-46858794 None:intergenic 35.0%
!! ATGCACGTTATTTTCAGTAG+TGG + chr1.1:46859022-46859041 MS.gene24679:intron 35.0%
!! CACAAAGCTCTTGTTGATTT+AGG + chr1.1:46857670-46857689 MS.gene24679:CDS 35.0%
!! CTAGCCTTTGGTATTTTCTT+TGG + chr1.1:46858941-46858960 MS.gene24679:intron 35.0%
!! TCTTGTTGATTTAGGCTATG+AGG + chr1.1:46857678-46857697 MS.gene24679:CDS 35.0%
!!! ACTTTTGAGATGCTTTGCTA+TGG + chr1.1:46858560-46858579 MS.gene24679:intron 35.0%
!!! CTTTTGAGATGCTTTGCTAT+GGG + chr1.1:46858561-46858580 MS.gene24679:intron 35.0%
!!! GCTAGGGGGATTTTTTATAA+AGG + chr1.1:46858891-46858910 MS.gene24679:intron 35.0%
!!! GGGGATTTTTTATAAAGGCT+TGG + chr1.1:46858896-46858915 MS.gene24679:intron 35.0%
!!! TTTTGAGATGCTTTGCTATG+GGG + chr1.1:46858562-46858581 MS.gene24679:intron 35.0%
AAAGAGAAGACACACAGAGA+TGG - chr1.1:46857842-46857861 None:intergenic 40.0%
AGAACAAGAGCCTGATTATG+AGG + chr1.1:46857993-46858012 MS.gene24679:CDS 40.0%
CAACTAGATATATGGCTAGG+GGG + chr1.1:46858877-46858896 MS.gene24679:intron 40.0%
CATAATCAGGCTCTTGTTCT+TGG - chr1.1:46857993-46858012 None:intergenic 40.0%
CATCAATGGACAACTCTATC+AGG - chr1.1:46858803-46858822 None:intergenic 40.0%
CATTTCTGTTAGGAACCTTG+TGG + chr1.1:46858512-46858531 MS.gene24679:intron 40.0%
CGATCTTGTCTCTATCATCA+TGG - chr1.1:46857729-46857748 None:intergenic 40.0%
GCCTAACTAAACTAGCTCAA+GGG - chr1.1:46858745-46858764 None:intergenic 40.0%
GGTCATATCTCTTACCAATG+TGG - chr1.1:46858685-46858704 None:intergenic 40.0%
GTCTGGACATCATTTCTGTT+AGG + chr1.1:46858502-46858521 MS.gene24679:intron 40.0%
GTTCAAAGATGGTTTGACTC+AGG + chr1.1:46857756-46857775 MS.gene24679:CDS 40.0%
TAACGTGCATAACTTACTGG+GGG - chr1.1:46859012-46859031 None:intergenic 40.0%
TATGAGGTCACTTCCATACA+AGG + chr1.1:46857694-46857713 MS.gene24679:CDS 40.0%
TGCCTAACTAAACTAGCTCA+AGG - chr1.1:46858746-46858765 None:intergenic 40.0%
TGGCAACAACACTTTCTTTG+AGG - chr1.1:46858338-46858357 None:intergenic 40.0%
TTGTTGCCACCATGTTTCAT+TGG + chr1.1:46858349-46858368 MS.gene24679:intron 40.0%
! GAAAATACCAAAGGCTAGCT+CGG - chr1.1:46858939-46858958 None:intergenic 40.0%
! TCCCTTGAGCTAGTTTAGTT+AGG + chr1.1:46858741-46858760 MS.gene24679:intron 40.0%
! TCTGACCCCAAATCTTTTGA+TGG + chr1.1:46858303-46858322 MS.gene24679:intron 40.0%
ACTAGCTCAAGGGAAATGAC+TGG - chr1.1:46858735-46858754 None:intergenic 45.0%
ACTCTCCATATGTCCAACTC+AGG + chr1.1:46858833-46858852 MS.gene24679:intron 45.0%
ATCAGCAACAGGTGCTCATT+TGG + chr1.1:46857815-46857834 MS.gene24679:intron 45.0%
CATCCCTTTCACCACATATC+AGG - chr1.1:46859106-46859125 None:intergenic 45.0%
CTCTCCATATGTCCAACTCA+GGG + chr1.1:46858834-46858853 MS.gene24679:intron 45.0%
TCTCCATATGTCCAACTCAG+GGG + chr1.1:46858835-46858854 MS.gene24679:intron 45.0%
TGTTAGGAACCTTGTGGGTT+GGG + chr1.1:46858518-46858537 MS.gene24679:intron 45.0%
! AATCCCCTGAGTTGGACATA+TGG - chr1.1:46858841-46858860 None:intergenic 45.0%
! TACTCAGCAGAGTACTTCAG+TGG - chr1.1:46857961-46857980 None:intergenic 45.0%
! TGTATTTGCACAGGGTTGGT+AGG + chr1.1:46858016-46858035 MS.gene24679:CDS 45.0%
!! ATGGTCAAGAGCACCTTGTA+TGG - chr1.1:46857710-46857729 None:intergenic 45.0%
!! GTATTTGCACAGGGTTGGTA+GGG + chr1.1:46858017-46858036 MS.gene24679:CDS 45.0%
CCTGTTGCTGATCAAAGCCA+CGG - chr1.1:46857807-46857826 None:intergenic 50.0%
CTGTTAGGAACCTTGTGGGT+TGG + chr1.1:46858517-46858536 MS.gene24679:intron 50.0%
CTGTTGCTGATCAAAGCCAC+GGG - chr1.1:46857806-46857825 None:intergenic 50.0%
GAGGTGTATTTGCACAGGGT+TGG + chr1.1:46858012-46858031 MS.gene24679:CDS 50.0%
TCCAACTCAGGGGATTTGAC+TGG + chr1.1:46858845-46858864 MS.gene24679:intron 50.0%
! CAAAGGCTAGCTCGGATCAA+GGG - chr1.1:46858931-46858950 None:intergenic 50.0%
AGGCTCTTGTTCTTGGCCAC+GGG - chr1.1:46857986-46858005 None:intergenic 55.0%
CAGGCTCTTGTTCTTGGCCA+CGG - chr1.1:46857987-46858006 None:intergenic 55.0%
GCCAGTCAAATCCCCTGAGT+TGG - chr1.1:46858849-46858868 None:intergenic 55.0%
TACTCTGCTGAGTACACCCG+TGG + chr1.1:46857967-46857986 MS.gene24679:CDS 55.0%
TCAACTCTGCCCAACCCACA+AGG - chr1.1:46858530-46858549 None:intergenic 55.0%
TCGACTGATGTTCTTGCCCG+TGG + chr1.1:46857787-46857806 MS.gene24679:CDS 55.0%
TTGGTAGGGCTGGGCGATTT+GGG + chr1.1:46858031-46858050 MS.gene24679:CDS 55.0%
! CCAAAGGCTAGCTCGGATCA+AGG - chr1.1:46858932-46858951 None:intergenic 55.0%
!! CCGTGGCTTTGATCAGCAAC+AGG + chr1.1:46857804-46857823 MS.gene24679:CDS 55.0%
!! CCTTGATCCGAGCTAGCCTT+TGG + chr1.1:46858929-46858948 MS.gene24679:intron 55.0%
! GTTGGTAGGGCTGGGCGATT+TGG + chr1.1:46858030-46858049 MS.gene24679:CDS 60.0%
!! TGCACAGGGTTGGTAGGGCT+GGG + chr1.1:46858022-46858041 MS.gene24679:CDS 60.0%
!! TTGCACAGGGTTGGTAGGGC+TGG + chr1.1:46858021-46858040 MS.gene24679:CDS 60.0%
! GCTGGGCGATTTGGGCGCAA+GGG + chr1.1:46858039-46858058 MS.gene24679:CDS 65.0%
! GGCTGGGCGATTTGGGCGCA+AGG + chr1.1:46858038-46858057 MS.gene24679:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 46857664 46859368 46857664 ID=MS.gene24679
chr1.1 mRNA 46857664 46859368 46857664 ID=MS.gene24679.t1;Parent=MS.gene24679
chr1.1 exon 46857664 46857825 46857664 ID=MS.gene24679.t1.exon1;Parent=MS.gene24679.t1
chr1.1 CDS 46857664 46857825 46857664 ID=cds.MS.gene24679.t1;Parent=MS.gene24679.t1
chr1.1 exon 46857931 46858060 46857931 ID=MS.gene24679.t1.exon2;Parent=MS.gene24679.t1
chr1.1 CDS 46857931 46858060 46857931 ID=cds.MS.gene24679.t1;Parent=MS.gene24679.t1
chr1.1 exon 46859090 46859175 46859090 ID=MS.gene24679.t1.exon3;Parent=MS.gene24679.t1
chr1.1 CDS 46859090 46859175 46859090 ID=cds.MS.gene24679.t1;Parent=MS.gene24679.t1
chr1.1 exon 46859306 46859368 46859306 ID=MS.gene24679.t1.exon4;Parent=MS.gene24679.t1
chr1.1 CDS 46859306 46859368 46859306 ID=cds.MS.gene24679.t1;Parent=MS.gene24679.t1
Gene Sequence

>MS.gene24679

ATGTTGCACAAAGCTCTTGTTGATTTAGGCTATGAGGTCACTTCCATACAAGGTGCTCTTGACCATGATGATAGAGACAAGATCGTCAAAGAGTTCAAAGATGGTTTGACTCAGGTTCTTATATCGACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTGCTCATTTGGTCCATCTCTGTGTGTCTTCTCTTTATGTGTGTTTAAGCTTTTTTTTTTTCCTTTCTTTTTTTTCTTCATGCATCCTTCCATTGCATTGTTTAGGTTAATTTGGTTATAAACTATGATCTTCCACTGAAGTACTCTGCTGAGTACACCCGTGGCCAAGAACAAGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGATTTGGGCGCAAGGGTAAGTTTCTAAATCTGTCTGCTTAGTGTTATGTAGTAAACTGTCTGCTTGTGTGTGTAGTTATCATAAATAAATTATTATATTATTATAACAAGTGAGCTTCATGTTAATATTATATTATTATAACAAGTGAGCTTCATGTTAATATTTTTAGTTCAGCTTGTTTAAGCCAAATATTACATATCTCACATTGTAGTAATTTAGCCATGCTCTTCCCATATATTATAATTGTTAGAGCAAACTCTGACCCCAAATCTTTTGATGGTGTTATTTTCCTCAAAGAAAGTGTTGTTGCCACCATGTTTCATTGGTTGTAAAATAGATGGCGATCCTATTATTTCTCTAATCTATCTAGTAATATTTCAAGCTTTTTGTATATGTGGATAGCGAATGTTATTTTGTGCTCGAGAAATTCTAGACAAAGTGTATAAATATGGTTGTGTCTGGACATCATTTCTGTTAGGAACCTTGTGGGTTGGGCAGAGTTGAGAGTTAACTGACTTTTGAGATGCTTTGCTATGGGGATTACAAGAAGAAACTCTTGTAATTATTCTCATTTAGGAAATTATACACTCATTTTATACTATCCCGTTCTTGGGTTTCTATCAATATTTAAAGATTCCACATTGGTAAGAGATATGACCAAAGTACTCTATCGTTATAAGATTTGGCCAGTCATTTCCCTTGAGCTAGTTTAGTTAGGCATAAATTCCAACATGGTATTAGAGCTTATCTGAAACCTGATAGAGTTGTCCATTGATGTCAAAATTTTACTCTCCATATGTCCAACTCAGGGGATTTGACTGGCACCCACTTCAACTAGATATATGGCTAGGGGGATTTTTTATAAAGGCTTGGGCAATCTTGCCCTTGATCCGAGCTAGCCTTTGGTATTTTCTTTGGCCTATATTTTTAGCATTTTCTAAGAAAGTCAAATTGTAATTTCAGCCCCCAGTAAGTTATGCACGTTATTTTCAGTAGTGGTGCAAATACCAAGTTTTCTTACATTTGTTTCATTTGATTGAATAGGGGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAAGACCTTGTCAAAGATTGAAAAACATTTTGGCACCTATATAAAAGAGGTACGCTAATTGATAATGTACTTGGATTATGATTATGATATTCCATTCAGCATAATGCAGAAAATCGGATCTTTAAAATTCGAACACTTTGTATGCATGTAAATCATTTTGTTAATGTCACTGGATGTAGGTGAAAGACAGAAGTGTTGAAGACTATAAAGTTGCTCTTAAAGAAGCTGGTTTACTGTTTTGA
Protein sequence

>MS.gene24679.t1

MLHKALVDLGYEVTSIQGALDHDDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYSAEYTRGQEQEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDEKTLSKIEKHFGTYIKEVKDRSVEDYKVALKEAGLLF