AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053008


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053008.t1 MTR_6g005840 91.222 900 65 4 1 889 1 897 0.0 1606
MS.gene053008.t1 MTR_6g005840 87.000 900 61 5 1 889 1 855 0.0 1515
MS.gene053008.t1 MTR_6g005960 80.925 692 62 6 1 682 1 632 0.0 1066
MS.gene053008.t1 MTR_6g005960 82.609 46 8 0 258 303 631 676 3.18e-17 87.0
MS.gene053008.t1 MTR_1g066890 30.769 351 181 12 129 449 165 483 9.39e-32 134
MS.gene053008.t1 MTR_1g072780 36.500 200 121 4 268 465 362 557 1.29e-30 130
MS.gene053008.t1 MTR_2g104120 30.743 296 160 9 267 546 257 523 2.01e-28 123
MS.gene053008.t1 MTR_4g036445 32.645 242 153 6 267 500 313 552 2.48e-26 115
MS.gene053008.t1 MTR_1g049120 35.263 190 117 5 264 449 286 473 3.11e-26 116
MS.gene053008.t1 MTR_7g113180 45.556 90 48 1 268 356 87 176 6.13e-21 99.4
MS.gene053008.t1 MTR_2g104980 43.000 100 56 1 267 365 232 331 1.77e-18 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053008.t1 AT3G27860 32.636 478 241 17 268 725 61 477 6.10e-54 199
MS.gene053008.t1 AT3G27860 32.636 478 241 17 268 725 61 477 6.10e-54 199
MS.gene053008.t1 AT3G09670 37.569 181 109 3 272 449 201 380 3.82e-27 119
MS.gene053008.t1 AT3G09670 37.569 181 109 3 272 449 201 380 3.82e-27 119
MS.gene053008.t1 AT5G02950 29.779 272 172 6 176 439 8 268 5.11e-26 114
MS.gene053008.t1 AT5G02950 29.779 272 172 6 176 439 8 268 5.11e-26 114
MS.gene053008.t1 AT5G27650 32.292 192 106 5 268 446 171 351 1.99e-21 101
MS.gene053008.t1 AT3G05430 37.226 137 72 4 268 400 133 259 2.46e-20 97.4
MS.gene053008.t1 AT3G05430 46.667 90 47 1 268 356 133 222 2.52e-20 97.4
MS.gene053008.t1 AT3G48187 28.571 196 108 4 263 449 101 273 8.60e-15 79.3

Find 195 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTCCTGAACCTGATTT+TGG 0.131227 6.2:-1624510 None:intergenic
TTCTCACTTGTTTCCACTAT+TGG 0.202116 6.2:-1623565 None:intergenic
TCATCAAAATTATCCTTAAA+AGG 0.203644 6.2:-1624021 None:intergenic
CCCCTTCTTGCCGCTGGTCT+TGG 0.225027 6.2:-1625414 None:intergenic
TTTCTCTTCCTTCCAGTTCC+AGG 0.230105 6.2:-1625269 None:intergenic
GAAAAGCATCGCTGACATTA+TGG 0.243680 6.2:+1624554 MS.gene053008:CDS
TCTGGTTGCAATTAAGTCTA+AGG 0.249968 6.2:+1624635 MS.gene053008:CDS
CTTTCTCATCATCTGGTGTT+TGG 0.275619 6.2:-1625058 None:intergenic
CTTCTTGTCTTGTGAAGGTT+TGG 0.278613 6.2:-1625483 None:intergenic
CTGAATCGATGGAACCATTT+GGG 0.308664 6.2:+1623062 MS.gene053008:CDS
GATTGATCAAGCTCAGATTC+TGG 0.308922 6.2:-1625296 None:intergenic
CTCTTGGTAGCTTACTTTGA+TGG 0.313271 6.2:+1623964 MS.gene053008:CDS
GAGCGAGGTGAAAGGTCTTT+TGG 0.315567 6.2:+1625655 MS.gene053008:CDS
CTCTCACTTGCCTCCACTAT+TGG 0.331300 6.2:-1623673 None:intergenic
AGGGTTTCTTTCTCATCATC+TGG 0.332565 6.2:-1625065 None:intergenic
GGATAGTGAGGAGGGAGAAA+AGG 0.332631 6.2:+1623612 MS.gene053008:CDS
TATTGATATTGCTAGTGTTC+TGG 0.336830 6.2:+1624305 MS.gene053008:CDS
TTCTCGCTTATCTCCACAAT+TGG 0.342327 6.2:-1623469 None:intergenic
ATGCTCTCTGTGCCACTATC+AGG 0.344127 6.2:-1624222 None:intergenic
AATGATTCCCCGGTGAATAA+TGG 0.346633 6.2:+1623220 MS.gene053008:CDS
GAAGGAACCTTGACTTTCTC+TGG 0.349916 6.2:-1625092 None:intergenic
TCTACCTTTGTCTTGAAATC+AGG 0.353557 6.2:-1625632 None:intergenic
TTCTGCTTTCTTCTACGGTT+CGG 0.373335 6.2:-1624534 None:intergenic
GCTGAAAATGTTATGGTTGA+AGG 0.374647 6.2:+1623100 MS.gene053008:CDS
TTCAAGTCCGAGAACCCGTT+TGG 0.377020 6.2:-1624406 None:intergenic
TAGTTTAGCTGAAAATGTTA+TGG 0.387200 6.2:+1623093 MS.gene053008:CDS
GATAGTGAGGAGGGAGAAAA+GGG 0.387448 6.2:+1623613 MS.gene053008:CDS
GTGCCCCTCCTTGACATTTG+TGG 0.393072 6.2:-1625155 None:intergenic
AAGAGAAAAGAGTTGCTTGC+AGG 0.395656 6.2:+1624711 MS.gene053008:CDS
AAAAGCATCGCTGACATTAT+GGG 0.401533 6.2:+1624555 MS.gene053008:CDS
CCTTGACTTTCTCTGGATCA+AGG 0.404674 6.2:-1625085 None:intergenic
TGCAAGTGATGATGAAGTTC+TGG 0.405456 6.2:+1624617 MS.gene053008:CDS
GTGTCTTCTTTGTTGAAAAC+GGG 0.409749 6.2:+1623370 MS.gene053008:CDS
AGTCGTCCGTTTGTTGTGGC+GGG 0.411945 6.2:+1624132 MS.gene053008:CDS
ATCGGTCCCCTTCTTGCCGC+TGG 0.412154 6.2:-1625420 None:intergenic
AATGAGAAGGATAGTGAGGA+GGG 0.420006 6.2:+1623604 MS.gene053008:CDS
ATGATTCCCCGGTGAATAAT+GGG 0.423865 6.2:+1623221 MS.gene053008:CDS
TCATCCGTGGTGGCCAGGTC+GGG 0.423902 6.2:+1623885 MS.gene053008:CDS
GGTGTCTTCTTTGTTGAAAA+CGG 0.424689 6.2:+1623369 MS.gene053008:CDS
GAGATGGTGTGGCTGGAGTT+AGG 0.425440 6.2:-1625517 None:intergenic
TCTTTCTTCTTGTCTTGTGA+AGG 0.429340 6.2:-1625488 None:intergenic
GTCATACAGCAGAAACTTCA+AGG 0.429955 6.2:+1625572 MS.gene053008:CDS
GAGGATCCCAAACGGGTTCT+CGG 0.430303 6.2:+1624399 MS.gene053008:CDS
ACTGAATCGATGGAACCATT+TGG 0.431119 6.2:+1623061 MS.gene053008:CDS
GCCGAAAGAACCAAATGAAA+AGG 0.433551 6.2:+1624869 MS.gene053008:CDS
GCAGGAGAAGAATGAGCTTA+AGG 0.435652 6.2:+1623129 MS.gene053008:CDS
GTGGAAAAGAAAGCTGTGAC+AGG 0.440805 6.2:+1624757 MS.gene053008:CDS
TTCGGCGGTTACACTTGAAC+CGG 0.441099 6.2:+1624245 MS.gene053008:CDS
ACCAAGACCAGCGGCAAGAA+GGG 0.445474 6.2:+1625413 MS.gene053008:CDS
TCAAGTCCGAGAACCCGTTT+GGG 0.445752 6.2:-1624405 None:intergenic
ATATCACCTAGCGAAGATTC+TGG 0.445815 6.2:+1625326 MS.gene053008:CDS
TTGACCCCAAAATCAGGTTC+AGG 0.446624 6.2:+1624504 MS.gene053008:CDS
GACTGTTGAGGTTCCAATAG+TGG 0.448213 6.2:+1623552 MS.gene053008:CDS
AACGGGAAGGAGAATGAGGA+GGG 0.451447 6.2:+1623508 MS.gene053008:CDS
TTTGTGAAGGGAAGAGGTGC+TGG 0.451932 6.2:+1624960 MS.gene053008:CDS
AGTCCTCTTCAAACGGCCCT+TGG 0.454433 6.2:-1624467 None:intergenic
GTCCTCTTCAAACGGCCCTT+GGG 0.454567 6.2:-1624466 None:intergenic
TTTGAAGGAGAATGATTCTC+AGG 0.456489 6.2:+1623192 MS.gene053008:CDS
AGGGGCAAATCGCAGCATTC+AGG 0.456509 6.2:+1624777 MS.gene053008:CDS
AACAGCATAGGTGAAAGCTT+TGG 0.458113 6.2:-1624064 None:intergenic
TATTGCTAGTGTTCTGGAGC+TGG 0.461926 6.2:+1624311 MS.gene053008:CDS
AATGAAGCTGAACCTGGAAC+TGG 0.462625 6.2:+1625257 MS.gene053008:CDS
CTGCCATTGACCCCAAAATC+AGG 0.463002 6.2:+1624498 MS.gene053008:CDS
GTCATCCGTGGTGGCCAGGT+CGG 0.463100 6.2:+1623884 MS.gene053008:CDS
TCTGGAGCTGGAAGTATTGA+AGG 0.466661 6.2:+1624323 MS.gene053008:CDS
TAGTGGCACAGAGAGCATTT+CGG 0.469354 6.2:+1624227 MS.gene053008:CDS
TTTGAAGGAGAATGACTCTC+AGG 0.472324 6.2:+1623318 MS.gene053008:CDS
AAGAGTCATCCGTGGTGGCC+AGG 0.472435 6.2:+1623880 MS.gene053008:CDS
AAACTAGTTTCAACCCCAAA+TGG 0.472605 6.2:-1623076 None:intergenic
GTCTATTGAGGTACCAATAG+TGG 0.480190 6.2:+1623660 MS.gene053008:CDS
ATATAAGTTACCTTGTTATG+AGG 0.486781 6.2:+1624380 MS.gene053008:CDS
TTGATGCAAAAGATAAGGAA+TGG 0.488934 6.2:+1624592 MS.gene053008:CDS
TTGTTATGAGGATCCCAAAC+GGG 0.489406 6.2:+1624392 MS.gene053008:CDS
CTTGACTTTCTCTGGATCAA+GGG 0.492651 6.2:-1625084 None:intergenic
AGCTGGAAGTATTGAAGGCT+CGG 0.494837 6.2:+1624328 MS.gene053008:CDS
ACTTTGATGGAACATTTGCT+TGG 0.495401 6.2:+1623977 MS.gene053008:CDS
ATGTTGATATTGAAGTGAAC+GGG 0.496688 6.2:+1623491 MS.gene053008:CDS
GATGAGTCGTCCGTTTGTTG+TGG 0.497438 6.2:+1624128 MS.gene053008:CDS
GAATACAATGAAGCTGAACC+TGG 0.498419 6.2:+1625251 MS.gene053008:CDS
GACTGTGGAGATTCCAATTG+TGG 0.500206 6.2:+1623456 MS.gene053008:CDS
AACAAAGATGACAATTGTGA+TGG 0.500623 6.2:+1623736 MS.gene053008:CDS
AGAGACTTTGTGAAGGGAAG+AGG 0.502911 6.2:+1624954 MS.gene053008:CDS
CAAGAAGCTGTAAATGAGGT+TGG 0.503519 6.2:+1624087 MS.gene053008:CDS
TTTGACAGAATTTCGGCTGA+AGG 0.505616 6.2:-1625110 None:intergenic
ACAGCAGAAACTTCAAGGTC+TGG 0.505797 6.2:+1625577 MS.gene053008:CDS
GAAACAAAAGAATAGACTCT+TGG 0.505954 6.2:+1623948 MS.gene053008:CDS
GTCGTCCGTTTGTTGTGGCG+GGG 0.506854 6.2:+1624133 MS.gene053008:CDS
CAGTGAGGCATTTCAAGAGT+TGG 0.507802 6.2:+1625013 MS.gene053008:CDS
GACTATTGAGGATTCAATAG+TGG 0.508888 6.2:+1623768 MS.gene053008:CDS
AGCCACACCATCTCTGTCAC+AGG 0.510870 6.2:+1625526 MS.gene053008:CDS
TCAGGTTGTGAATGATTCCC+CGG 0.512345 6.2:+1623210 MS.gene053008:CDS
GATGAATGAGAAGGATAGTG+AGG 0.516877 6.2:+1623600 MS.gene053008:CDS
GTCTGAATTCGCTCCAATGT+TGG 0.517774 6.2:+1624164 MS.gene053008:CDS
TCGTCCGTTTGTTGTGGCGG+GGG 0.517804 6.2:+1624134 MS.gene053008:CDS
TCTTCAAACGGCCCTTGGGA+TGG 0.521494 6.2:-1624462 None:intergenic
AGTGAACGGGAAGGAGAATG+AGG 0.522445 6.2:+1623504 MS.gene053008:CDS
AGCGGAGAGGAAAACGATGA+AGG 0.522589 6.2:+1624843 MS.gene053008:CDS
AGATGTTGATGCAAAAGATA+AGG 0.523242 6.2:+1624587 MS.gene053008:CDS
GAATGAGAAGGATAGTGAGG+AGG 0.523714 6.2:+1623603 MS.gene053008:CDS
GAGAACATCAGCGGTGGGAG+CGG 0.524254 6.2:+1624825 MS.gene053008:CDS
AACCAAGACCAGCGGCAAGA+AGG 0.531503 6.2:+1625412 MS.gene053008:CDS
CCGAAAGAACCAAATGAAAA+GGG 0.533668 6.2:+1624870 MS.gene053008:CDS
GTAGAGTAGTCCTCTTCAAA+CGG 0.540996 6.2:-1624474 None:intergenic
ACTGATACAGAGACTGTAAG+AGG 0.542096 6.2:+1624735 MS.gene053008:CDS
CCAAGACCAGCGGCAAGAAG+GGG 0.545038 6.2:+1625414 MS.gene053008:CDS
GCGGAGAGGAAAACGATGAA+GGG 0.547080 6.2:+1624844 MS.gene053008:CDS
AATGTTGATATTGAAGTGAA+CGG 0.548378 6.2:+1623490 MS.gene053008:CDS
GAAAAGGGTGAAAATTGTGA+TGG 0.548470 6.2:+1623628 MS.gene053008:CDS
TTAAAAGGCTTCAATTGTGA+CGG 0.549559 6.2:-1624006 None:intergenic
GAGTCGTCCGTTTGTTGTGG+CGG 0.551345 6.2:+1624131 MS.gene053008:CDS
GAAGACACCCCATTATTCAC+CGG 0.552105 6.2:-1623229 None:intergenic
TGTGACAGAGATGGTGTGGC+TGG 0.552295 6.2:-1625524 None:intergenic
GAAATCAGGCGATTTGTCGT+CGG 0.552919 6.2:-1625618 None:intergenic
ATCCCAAGGGCCGTTTGAAG+AGG 0.558737 6.2:+1624464 MS.gene053008:CDS
AAGCTGTAAATGAGGTTGGA+AGG 0.558828 6.2:+1624091 MS.gene053008:CDS
ACTGAGAAGGAGAGCGCGGA+AGG 0.560275 6.2:+1623712 MS.gene053008:CDS
GACGATCAACTTAGATGTCT+CGG 0.562618 6.2:-1625552 None:intergenic
AAAGCATCGCTGACATTATG+GGG 0.562780 6.2:+1624556 MS.gene053008:CDS
CTGGTTGCAATTAAGTCTAA+GGG 0.563006 6.2:+1624636 MS.gene053008:CDS
CGCTTAGTCCACAAATGTCA+AGG 0.564092 6.2:+1625147 MS.gene053008:CDS
GCAAGTTCCGACGCATCAGA+CGG 0.564834 6.2:-1623916 None:intergenic
TATGGTTGAAGGTTCAGAGC+AGG 0.565252 6.2:+1623111 MS.gene053008:CDS
TTGACGATTTGATTGATGAA+AGG 0.567900 6.2:+1623818 MS.gene053008:CDS
TCAATCAGAGACTTTGTGAA+GGG 0.572253 6.2:+1624948 MS.gene053008:CDS
TGTGATAAGAAAGTCAAAGA+AGG 0.573083 6.2:+1623418 MS.gene053008:CDS
AGTGGAGGCTAGTGAGAGCA+TGG 0.574743 6.2:+1623786 MS.gene053008:CDS
TGATGCAAAAGATAAGGAAT+GGG 0.574961 6.2:+1624593 MS.gene053008:CDS
TTGAAACTCGAGGAGAAAGC+AGG 0.575194 6.2:-1624983 None:intergenic
CTTGTTATGAGGATCCCAAA+CGG 0.575919 6.2:+1624391 MS.gene053008:CDS
GGAAAAGAAAGCTGTGACAG+GGG 0.576442 6.2:+1624759 MS.gene053008:CDS
GAACGGGAAGGAGAATGAGG+AGG 0.577213 6.2:+1623507 MS.gene053008:CDS
AAGGCTTCAATTGTGACGGA+TGG 0.578767 6.2:-1624002 None:intergenic
TGGACCAGCCAAGAAAAGAA+AGG 0.581389 6.2:+1625346 MS.gene053008:CDS
AAGGTAGAGAGCGAGGTGAA+AGG 0.582258 6.2:+1625647 MS.gene053008:CDS
TGGGAAGATCGAGACTATTG+AGG 0.585945 6.2:+1623756 MS.gene053008:CDS
AGCTGTAAATGAGGTTGGAA+GGG 0.590294 6.2:+1624092 MS.gene053008:CDS
ACAAAGATGACAATTGTGAT+GGG 0.590514 6.2:+1623737 MS.gene053008:CDS
GCAGTTGAAGCACCATCCCA+AGG 0.591867 6.2:+1624450 MS.gene053008:CDS
AAAAGGGTGAAAATTGTGAT+GGG 0.593063 6.2:+1623629 MS.gene053008:CDS
TGAATCGATGGAACCATTTG+GGG 0.594772 6.2:+1623063 MS.gene053008:CDS
TAGTCCACAAATGTCAAGGA+GGG 0.595379 6.2:+1625151 MS.gene053008:CDS
CGATGTTGAAATGACTGAGA+AGG 0.596335 6.2:+1623699 MS.gene053008:CDS
ACTTGAGAAAGTAACTCAGC+CGG 0.596936 6.2:-1624264 None:intergenic
GCTGGTCCAGAATCTTCGCT+AGG 0.598905 6.2:-1625332 None:intergenic
TTATGATCCGTCTGATGCGT+CGG 0.599363 6.2:+1623909 MS.gene053008:CDS
AAGACACCCCATTATTCACC+GGG 0.600301 6.2:-1623228 None:intergenic
CTGTTATACTTTGAAACTCG+AGG 0.601039 6.2:-1624993 None:intergenic
TACAGCTTCTTGAACAGCAT+AGG 0.602664 6.2:-1624076 None:intergenic
TCTCTGATTGAAGTAGTGAA+AGG 0.604217 6.2:-1624936 None:intergenic
TTCAATCAGAGACTTTGTGA+AGG 0.604784 6.2:+1624947 MS.gene053008:CDS
AAATGAGGTTGGAAGGGTGC+TGG 0.605434 6.2:+1624098 MS.gene053008:CDS
CGTTTGGGATCCTCATAACA+AGG 0.612389 6.2:-1624390 None:intergenic
TTTGATGATATGGTGGGACA+AGG 0.614353 6.2:+1624036 MS.gene053008:CDS
TGGAAAAGAAAGCTGTGACA+GGG 0.618152 6.2:+1624758 MS.gene053008:CDS
TAAACCCGACCTGGCCACCA+CGG 0.618975 6.2:-1623889 None:intergenic
AGAAGTTCATTGTATCGCGA+AGG 0.620174 6.2:+1625215 MS.gene053008:CDS
TGATATTGAAGTGAACGGGA+AGG 0.622379 6.2:+1623495 MS.gene053008:CDS
GACGGATCATAAACCCGACC+TGG 0.623787 6.2:-1623898 None:intergenic
CAAGACAAAGGTAGAGAGCG+AGG 0.627059 6.2:+1625640 MS.gene053008:CDS
ATCGCCTGATTTCAAGACAA+AGG 0.628439 6.2:+1625628 MS.gene053008:CDS
GGTAATGAGAACATCAGCGG+TGG 0.629748 6.2:+1624819 MS.gene053008:CDS
TATTGAGGATTCAATAGTGG+AGG 0.631691 6.2:+1623771 MS.gene053008:CDS
TGGGAAGATAGAGTCTATTG+AGG 0.636228 6.2:+1623648 MS.gene053008:CDS
TGTGGTTGATACTGAATCGA+TGG 0.639717 6.2:+1623051 MS.gene053008:CDS
TTGAAAACGGGAGAAAACGA+TGG 0.643487 6.2:+1623382 MS.gene053008:CDS
AGTCCACAAATGTCAAGGAG+GGG 0.647484 6.2:+1625152 MS.gene053008:CDS
CTGATTGAAGTAGTGAAAGG+AGG 0.649899 6.2:-1624933 None:intergenic
TCGGTACCCTGTGACAGAGA+TGG 0.651603 6.2:-1625533 None:intergenic
TGTTCAAGAAGCTGTAAATG+AGG 0.656142 6.2:+1624083 MS.gene053008:CDS
AAGCTGAACCTGGAACTGGA+AGG 0.657278 6.2:+1625261 MS.gene053008:CDS
TATTGAGGTACCAATAGTGG+AGG 0.665817 6.2:+1623663 MS.gene053008:CDS
GATACAGAGACTGTAAGAGG+TGG 0.665933 6.2:+1624738 MS.gene053008:CDS
CATCAGCGGTGGGAGCGGAG+AGG 0.666693 6.2:+1624830 MS.gene053008:CDS
CAGTTGAAGCACCATCCCAA+GGG 0.667937 6.2:+1624451 MS.gene053008:CDS
ACCCTGTGACAGAGATGGTG+TGG 0.668589 6.2:-1625528 None:intergenic
GTAATGAGAACATCAGCGGT+GGG 0.671348 6.2:+1624820 MS.gene053008:CDS
CAAATCGCAGCATTCAGGTG+AGG 0.675770 6.2:+1624782 MS.gene053008:CDS
TTAGTCCACAAATGTCAAGG+AGG 0.675813 6.2:+1625150 MS.gene053008:CDS
TGATGTTGAGATGAATGAGA+AGG 0.677474 6.2:+1623591 MS.gene053008:CDS
GCCACACCATCTCTGTCACA+GGG 0.681280 6.2:+1625527 MS.gene053008:CDS
TGGCACAGAGAGCATTTCGG+CGG 0.682197 6.2:+1624230 MS.gene053008:CDS
CCTTGATCCAGAGAAAGTCA+AGG 0.684171 6.2:+1625085 MS.gene053008:CDS
TGATTCTGAAGTGAATAATG+AGG 0.686144 6.2:+1623348 MS.gene053008:CDS
AATGACTGAGAAGGAGAGCG+CGG 0.688964 6.2:+1623708 MS.gene053008:CDS
AGATTAAGAGTCATCCGTGG+TGG 0.700219 6.2:+1623875 MS.gene053008:CDS
TCTGGTAATGAGAACATCAG+CGG 0.703698 6.2:+1624816 MS.gene053008:CDS
GCTCGTGAAACCAAGACCAG+CGG 0.704734 6.2:+1625404 MS.gene053008:CDS
AAGCATCGCTGACATTATGG+GGG 0.710590 6.2:+1624557 MS.gene053008:CDS
ACGGGAAGGAGAATGAGGAG+GGG 0.710995 6.2:+1623509 MS.gene053008:CDS
TCTTCTGAGATGAATAATGA+CGG 0.712707 6.2:+1623247 MS.gene053008:CDS
TTTGGAGGATGTGAACAACA+TGG 0.726968 6.2:+1625673 MS.gene053008:CDS
TGATTCCCCGGTGAATAATG+GGG 0.731764 6.2:+1623222 MS.gene053008:CDS
AGTTTCAAAGTATAACAGTG+AGG 0.743340 6.2:+1624998 MS.gene053008:CDS
GAAAGATTAAGAGTCATCCG+TGG 0.746341 6.2:+1623872 MS.gene053008:CDS
AGACACCCCATTATTCACCG+GGG 0.792139 6.2:-1623227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCAAAATTATCCTTAAA+AGG - chr6.2:1624024-1624043 None:intergenic 20.0%
!!! TAAGGATAATTTTGATGATA+TGG + chr6.2:1624026-1624045 MS.gene053008:CDS 20.0%
! AATGTTGATATTGAAGTGAA+CGG + chr6.2:1623490-1623509 MS.gene053008:CDS 25.0%
! TAGTTTAGCTGAAAATGTTA+TGG + chr6.2:1623093-1623112 MS.gene053008:CDS 25.0%
!! ATATAAGTTACCTTGTTATG+AGG + chr6.2:1624380-1624399 MS.gene053008:CDS 25.0%
!!! GATAATTTTGATGATATGGT+GGG + chr6.2:1624030-1624049 MS.gene053008:CDS 25.0%
AAAAATTCAGGAATCAAGGA+AGG + chr6.2:1624189-1624208 MS.gene053008:CDS 30.0%
AAAAGGGTGAAAATTGTGAT+GGG + chr6.2:1623629-1623648 MS.gene053008:CDS 30.0%
AACAAAGATGACAATTGTGA+TGG + chr6.2:1623736-1623755 MS.gene053008:CDS 30.0%
ACAAAGATGACAATTGTGAT+GGG + chr6.2:1623737-1623756 MS.gene053008:CDS 30.0%
AGATGTTGATGCAAAAGATA+AGG + chr6.2:1624587-1624606 MS.gene053008:CDS 30.0%
AGTTTCAAAGTATAACAGTG+AGG + chr6.2:1624998-1625017 MS.gene053008:CDS 30.0%
ATGTTGATATTGAAGTGAAC+GGG + chr6.2:1623491-1623510 MS.gene053008:CDS 30.0%
GAAACAAAAGAATAGACTCT+TGG + chr6.2:1623948-1623967 MS.gene053008:CDS 30.0%
TATTGATATTGCTAGTGTTC+TGG + chr6.2:1624305-1624324 MS.gene053008:CDS 30.0%
TGATGAAAAAATTCAGACTG+TGG + chr6.2:1623441-1623460 MS.gene053008:CDS 30.0%
TGATGCAAAAGATAAGGAAT+GGG + chr6.2:1624593-1624612 MS.gene053008:CDS 30.0%
TGTGATAAGAAAGTCAAAGA+AGG + chr6.2:1623418-1623437 MS.gene053008:CDS 30.0%
TTAAAAGGCTTCAATTGTGA+CGG - chr6.2:1624009-1624028 None:intergenic 30.0%
TTGACGATTTGATTGATGAA+AGG + chr6.2:1623818-1623837 MS.gene053008:CDS 30.0%
TTGATGCAAAAGATAAGGAA+TGG + chr6.2:1624592-1624611 MS.gene053008:CDS 30.0%
! GACAAAAAACCCTTTTCATT+TGG - chr6.2:1624882-1624901 None:intergenic 30.0%
! GCGAATTTTTGACAGAATTT+CGG - chr6.2:1625120-1625139 None:intergenic 30.0%
! TCAGCTTTTTATCTCTCAAA+AGG + chr6.2:1624354-1624373 MS.gene053008:CDS 30.0%
!! GGATAATTTTGATGATATGG+TGG + chr6.2:1624029-1624048 MS.gene053008:CDS 30.0%
!! TCTTCTGAGATGAATAATGA+CGG + chr6.2:1623247-1623266 MS.gene053008:CDS 30.0%
!! TGATTCTGAAGTGAATAATG+AGG + chr6.2:1623348-1623367 MS.gene053008:CDS 30.0%
ACTTTGATGGAACATTTGCT+TGG + chr6.2:1623977-1623996 MS.gene053008:CDS 35.0%
CCGAAAGAACCAAATGAAAA+GGG + chr6.2:1624870-1624889 MS.gene053008:CDS 35.0%
CTGGTTGCAATTAAGTCTAA+GGG + chr6.2:1624636-1624655 MS.gene053008:CDS 35.0%
GAAAAGGGTGAAAATTGTGA+TGG + chr6.2:1623628-1623647 MS.gene053008:CDS 35.0%
GACTATTGAGGATTCAATAG+TGG + chr6.2:1623768-1623787 MS.gene053008:CDS 35.0%
GCTGAAAATGTTATGGTTGA+AGG + chr6.2:1623100-1623119 MS.gene053008:CDS 35.0%
GGTGTCTTCTTTGTTGAAAA+CGG + chr6.2:1623369-1623388 MS.gene053008:CDS 35.0%
GTGTCTTCTTTGTTGAAAAC+GGG + chr6.2:1623370-1623389 MS.gene053008:CDS 35.0%
TATTGAGGATTCAATAGTGG+AGG + chr6.2:1623771-1623790 MS.gene053008:CDS 35.0%
TCAATCAGAGACTTTGTGAA+GGG + chr6.2:1624948-1624967 MS.gene053008:CDS 35.0%
TCTACCTTTGTCTTGAAATC+AGG - chr6.2:1625635-1625654 None:intergenic 35.0%
TCTCTGATTGAAGTAGTGAA+AGG - chr6.2:1624939-1624958 None:intergenic 35.0%
TCTGGTTGCAATTAAGTCTA+AGG + chr6.2:1624635-1624654 MS.gene053008:CDS 35.0%
TCTTTCTTCTTGTCTTGTGA+AGG - chr6.2:1625491-1625510 None:intergenic 35.0%
TGAAAAAATTGCGACTGTTG+AGG + chr6.2:1623540-1623559 MS.gene053008:CDS 35.0%
TGATGTTGAGATGAATGAGA+AGG + chr6.2:1623591-1623610 MS.gene053008:CDS 35.0%
TGTTCAAGAAGCTGTAAATG+AGG + chr6.2:1624083-1624102 MS.gene053008:CDS 35.0%
TTCAATCAGAGACTTTGTGA+AGG + chr6.2:1624947-1624966 MS.gene053008:CDS 35.0%
TTCTCACTTGTTTCCACTAT+TGG - chr6.2:1623568-1623587 None:intergenic 35.0%
TTTGAAGGAGAATGATTCTC+AGG + chr6.2:1623192-1623211 MS.gene053008:CDS 35.0%
! AAACTAGTTTCAACCCCAAA+TGG - chr6.2:1623079-1623098 None:intergenic 35.0%
! AACTCTTTTCTCTTCTGAAC+TGG - chr6.2:1624705-1624724 None:intergenic 35.0%
! AGTTCTCTCCTTTCTTTTCT+TGG - chr6.2:1625357-1625376 None:intergenic 35.0%
! GCTTTTTATCTCTCAAAAGG+AGG + chr6.2:1624357-1624376 MS.gene053008:CDS 35.0%
! GTCACAATTGAAGCCTTTTA+AGG + chr6.2:1624008-1624027 MS.gene053008:CDS 35.0%
! TACTTCCTGAACCTGATTTT+GGG - chr6.2:1624512-1624531 None:intergenic 35.0%
! TGCTTTTCTGCTTTCTTCTA+CGG - chr6.2:1624542-1624561 None:intergenic 35.0%
! TTGTCCTCCAGATTTTTCAT+CGG - chr6.2:1625441-1625460 None:intergenic 35.0%
! TTTCTGTTGGCGATTTTGTT+TGG + chr6.2:1623848-1623867 MS.gene053008:CDS 35.0%
!! AAAAGCATCGCTGACATTAT+GGG + chr6.2:1624555-1624574 MS.gene053008:CDS 35.0%
!! CTGTTATACTTTGAAACTCG+AGG - chr6.2:1624996-1625015 None:intergenic 35.0%
!! TGTTTTCAAGACTGAGGTTT+CGG + chr6.2:1623168-1623187 MS.gene053008:CDS 35.0%
!! TTCTGTTGGCGATTTTGTTT+GGG + chr6.2:1623849-1623868 MS.gene053008:CDS 35.0%
!!! AGGGTTTTTTGTCAAGAGAA+AGG + chr6.2:1624889-1624908 MS.gene053008:CDS 35.0%
!!! CCCTTTTCATTTGGTTCTTT+CGG - chr6.2:1624873-1624892 None:intergenic 35.0%
AAAAAAGACAACGACGATGC+AGG + chr6.2:1624669-1624688 MS.gene053008:CDS 40.0%
AAAAAGACAACGACGATGCA+GGG + chr6.2:1624670-1624689 MS.gene053008:CDS 40.0%
AACAGCATAGGTGAAAGCTT+TGG - chr6.2:1624067-1624086 None:intergenic 40.0%
AAGAGAAAAGAGTTGCTTGC+AGG + chr6.2:1624711-1624730 MS.gene053008:CDS 40.0%
AAGCTGTAAATGAGGTTGGA+AGG + chr6.2:1624091-1624110 MS.gene053008:CDS 40.0%
AATGAGAAGGATAGTGAGGA+GGG + chr6.2:1623604-1623623 MS.gene053008:CDS 40.0%
AATGATTCCCCGGTGAATAA+TGG + chr6.2:1623220-1623239 MS.gene053008:CDS 40.0%
ACTGAATCGATGGAACCATT+TGG + chr6.2:1623061-1623080 MS.gene053008:CDS 40.0%
ACTGATACAGAGACTGTAAG+AGG + chr6.2:1624735-1624754 MS.gene053008:CDS 40.0%
ACTTGAGAAAGTAACTCAGC+CGG - chr6.2:1624267-1624286 None:intergenic 40.0%
AGAAGTTCATTGTATCGCGA+AGG + chr6.2:1625215-1625234 MS.gene053008:CDS 40.0%
AGCTGTAAATGAGGTTGGAA+GGG + chr6.2:1624092-1624111 MS.gene053008:CDS 40.0%
AGGGTTTCTTTCTCATCATC+TGG - chr6.2:1625068-1625087 None:intergenic 40.0%
ATATCACCTAGCGAAGATTC+TGG + chr6.2:1625326-1625345 MS.gene053008:CDS 40.0%
ATCGCCTGATTTCAAGACAA+AGG + chr6.2:1625628-1625647 MS.gene053008:CDS 40.0%
ATGATTCCCCGGTGAATAAT+GGG + chr6.2:1623221-1623240 MS.gene053008:CDS 40.0%
CAAGAAGCTGTAAATGAGGT+TGG + chr6.2:1624087-1624106 MS.gene053008:CDS 40.0%
CCAATGTTGGCGAAAAATTC+AGG + chr6.2:1624177-1624196 MS.gene053008:CDS 40.0%
CGATGTTGAAATGACTGAGA+AGG + chr6.2:1623699-1623718 MS.gene053008:CDS 40.0%
CTGAATCGATGGAACCATTT+GGG + chr6.2:1623062-1623081 MS.gene053008:CDS 40.0%
CTGATTGAAGTAGTGAAAGG+AGG - chr6.2:1624936-1624955 None:intergenic 40.0%
CTTCTTGTCTTGTGAAGGTT+TGG - chr6.2:1625486-1625505 None:intergenic 40.0%
CTTGACTTTCTCTGGATCAA+GGG - chr6.2:1625087-1625106 None:intergenic 40.0%
CTTTCTCATCATCTGGTGTT+TGG - chr6.2:1625061-1625080 None:intergenic 40.0%
GAAAGATTAAGAGTCATCCG+TGG + chr6.2:1623872-1623891 MS.gene053008:CDS 40.0%
GAATACAATGAAGCTGAACC+TGG + chr6.2:1625251-1625270 MS.gene053008:CDS 40.0%
GACGATCAACTTAGATGTCT+CGG - chr6.2:1625555-1625574 None:intergenic 40.0%
GATGAATGAGAAGGATAGTG+AGG + chr6.2:1623600-1623619 MS.gene053008:CDS 40.0%
GATTGATCAAGCTCAGATTC+TGG - chr6.2:1625299-1625318 None:intergenic 40.0%
GCCGAAAGAACCAAATGAAA+AGG + chr6.2:1624869-1624888 MS.gene053008:CDS 40.0%
GGCGAAAAATTCAGGAATCA+AGG + chr6.2:1624185-1624204 MS.gene053008:CDS 40.0%
GTAGAGTAGTCCTCTTCAAA+CGG - chr6.2:1624477-1624496 None:intergenic 40.0%
GTCATACAGCAGAAACTTCA+AGG + chr6.2:1625572-1625591 MS.gene053008:CDS 40.0%
TACAGCTTCTTGAACAGCAT+AGG - chr6.2:1624079-1624098 None:intergenic 40.0%
TAGTCCACAAATGTCAAGGA+GGG + chr6.2:1625151-1625170 MS.gene053008:CDS 40.0%
TGAATCGATGGAACCATTTG+GGG + chr6.2:1623063-1623082 MS.gene053008:CDS 40.0%
TGATATTGAAGTGAACGGGA+AGG + chr6.2:1623495-1623514 MS.gene053008:CDS 40.0%
TGGAAAAGAAAGCTGTGACA+GGG + chr6.2:1624758-1624777 MS.gene053008:CDS 40.0%
TGGGAAGATAGAGTCTATTG+AGG + chr6.2:1623648-1623667 MS.gene053008:CDS 40.0%
TTAGTCCACAAATGTCAAGG+AGG + chr6.2:1625150-1625169 MS.gene053008:CDS 40.0%
TTCTCGCTTATCTCCACAAT+TGG - chr6.2:1623472-1623491 None:intergenic 40.0%
TTCTGCTTTCTTCTACGGTT+CGG - chr6.2:1624537-1624556 None:intergenic 40.0%
TTGAAAACGGGAGAAAACGA+TGG + chr6.2:1623382-1623401 MS.gene053008:CDS 40.0%
TTGTTATGAGGATCCCAAAC+GGG + chr6.2:1624392-1624411 MS.gene053008:CDS 40.0%
TTTGAAGGAGAATGACTCTC+AGG + chr6.2:1623318-1623337 MS.gene053008:CDS 40.0%
TTTGACAGAATTTCGGCTGA+AGG - chr6.2:1625113-1625132 None:intergenic 40.0%
TTTGGAGGATGTGAACAACA+TGG + chr6.2:1625673-1625692 MS.gene053008:CDS 40.0%
! ACTTCCTGAACCTGATTTTG+GGG - chr6.2:1624511-1624530 None:intergenic 40.0%
! CCTGAATTTTTCGCCAACAT+TGG - chr6.2:1624180-1624199 None:intergenic 40.0%
! CTACTTCCTGAACCTGATTT+TGG - chr6.2:1624513-1624532 None:intergenic 40.0%
! CTCTTGGTAGCTTACTTTGA+TGG + chr6.2:1623964-1623983 MS.gene053008:CDS 40.0%
! CTTGTTATGAGGATCCCAAA+CGG + chr6.2:1624391-1624410 MS.gene053008:CDS 40.0%
! GACTGAGGTTTCGATTTTGA+AGG + chr6.2:1623303-1623322 MS.gene053008:CDS 40.0%
! GTCTATTGAGGTACCAATAG+TGG + chr6.2:1623660-1623679 MS.gene053008:CDS 40.0%
! TATTGAGGTACCAATAGTGG+AGG + chr6.2:1623663-1623682 MS.gene053008:CDS 40.0%
! TCTGGTAATGAGAACATCAG+CGG + chr6.2:1624816-1624835 MS.gene053008:CDS 40.0%
! TGCAAGTGATGATGAAGTTC+TGG + chr6.2:1624617-1624636 MS.gene053008:CDS 40.0%
! TGTGGTTGATACTGAATCGA+TGG + chr6.2:1623051-1623070 MS.gene053008:CDS 40.0%
! TTTGATGATATGGTGGGACA+AGG + chr6.2:1624036-1624055 MS.gene053008:CDS 40.0%
!! AAAGCATCGCTGACATTATG+GGG + chr6.2:1624556-1624575 MS.gene053008:CDS 40.0%
!! GAAAAGCATCGCTGACATTA+TGG + chr6.2:1624554-1624573 MS.gene053008:CDS 40.0%
!! GAAAGGTGTGACTTTTCTGT+TGG + chr6.2:1623835-1623854 MS.gene053008:CDS 40.0%
!! GAGTAGTGTTTTCAAGACTG+AGG + chr6.2:1623162-1623181 MS.gene053008:CDS 40.0%
!! TCTGTTGGCGATTTTGTTTG+GGG + chr6.2:1623850-1623869 MS.gene053008:CDS 40.0%
AAGACACCCCATTATTCACC+GGG - chr6.2:1623231-1623250 None:intergenic 45.0%
AAGGGGACCGATGAAAAATC+TGG + chr6.2:1625431-1625450 MS.gene053008:CDS 45.0%
AATGAAGCTGAACCTGGAAC+TGG + chr6.2:1625257-1625276 MS.gene053008:CDS 45.0%
ACAGCAGAAACTTCAAGGTC+TGG + chr6.2:1625577-1625596 MS.gene053008:CDS 45.0%
AGAGACTTTGTGAAGGGAAG+AGG + chr6.2:1624954-1624973 MS.gene053008:CDS 45.0%
AGATTAAGAGTCATCCGTGG+TGG + chr6.2:1623875-1623894 MS.gene053008:CDS 45.0%
AGTCCACAAATGTCAAGGAG+GGG + chr6.2:1625152-1625171 MS.gene053008:CDS 45.0%
CCTTGACTTTCTCTGGATCA+AGG - chr6.2:1625088-1625107 None:intergenic 45.0%
CCTTGATCCAGAGAAAGTCA+AGG + chr6.2:1625085-1625104 MS.gene053008:CDS 45.0%
CGCTTAGTCCACAAATGTCA+AGG + chr6.2:1625147-1625166 MS.gene053008:CDS 45.0%
GAAATCAGGCGATTTGTCGT+CGG - chr6.2:1625621-1625640 None:intergenic 45.0%
GAAGACACCCCATTATTCAC+CGG - chr6.2:1623232-1623251 None:intergenic 45.0%
GAAGGAACCTTGACTTTCTC+TGG - chr6.2:1625095-1625114 None:intergenic 45.0%
GAATGAGAAGGATAGTGAGG+AGG + chr6.2:1623603-1623622 MS.gene053008:CDS 45.0%
GACTGTGGAGATTCCAATTG+TGG + chr6.2:1623456-1623475 MS.gene053008:CDS 45.0%
GACTGTTGAGGTTCCAATAG+TGG + chr6.2:1623552-1623571 MS.gene053008:CDS 45.0%
GATACAGAGACTGTAAGAGG+TGG + chr6.2:1624738-1624757 MS.gene053008:CDS 45.0%
GATAGTGAGGAGGGAGAAAA+GGG + chr6.2:1623613-1623632 MS.gene053008:CDS 45.0%
GCAGGAGAAGAATGAGCTTA+AGG + chr6.2:1623129-1623148 MS.gene053008:CDS 45.0%
GGAAAAGAAAGCTGTGACAG+GGG + chr6.2:1624759-1624778 MS.gene053008:CDS 45.0%
GGTGAGGAAAAAGAAGCTTC+TGG + chr6.2:1624798-1624817 MS.gene053008:CDS 45.0%
GTAATGAGAACATCAGCGGT+GGG + chr6.2:1624820-1624839 MS.gene053008:CDS 45.0%
GTCTGAATTCGCTCCAATGT+TGG + chr6.2:1624164-1624183 MS.gene053008:CDS 45.0%
GTGGAAAAGAAAGCTGTGAC+AGG + chr6.2:1624757-1624776 MS.gene053008:CDS 45.0%
TATGGTTGAAGGTTCAGAGC+AGG + chr6.2:1623111-1623130 MS.gene053008:CDS 45.0%
TGATTCCCCGGTGAATAATG+GGG + chr6.2:1623222-1623241 MS.gene053008:CDS 45.0%
TGGACCAGCCAAGAAAAGAA+AGG + chr6.2:1625346-1625365 MS.gene053008:CDS 45.0%
TGGGAAGATCGAGACTATTG+AGG + chr6.2:1623756-1623775 MS.gene053008:CDS 45.0%
TTATGATCCGTCTGATGCGT+CGG + chr6.2:1623909-1623928 MS.gene053008:CDS 45.0%
TTGAAACTCGAGGAGAAAGC+AGG - chr6.2:1624986-1625005 None:intergenic 45.0%
TTGACCCCAAAATCAGGTTC+AGG + chr6.2:1624504-1624523 MS.gene053008:CDS 45.0%
TTTCTCTTCCTTCCAGTTCC+AGG - chr6.2:1625272-1625291 None:intergenic 45.0%
! AAGCATCGCTGACATTATGG+GGG + chr6.2:1624557-1624576 MS.gene053008:CDS 45.0%
! AAGGCTTCAATTGTGACGGA+TGG - chr6.2:1624005-1624024 None:intergenic 45.0%
! CAGTGAGGCATTTCAAGAGT+TGG + chr6.2:1625013-1625032 MS.gene053008:CDS 45.0%
! CGTTTGGGATCCTCATAACA+AGG - chr6.2:1624393-1624412 None:intergenic 45.0%
! CTCTCCTTTCTTTTCTTGGC+TGG - chr6.2:1625353-1625372 None:intergenic 45.0%
! TCAGGTTGTGAATGATTCCC+CGG + chr6.2:1623210-1623229 MS.gene053008:CDS 45.0%
!! AGCTGGAAGTATTGAAGGCT+CGG + chr6.2:1624328-1624347 MS.gene053008:CDS 45.0%
!! GACTGAGGTTTCGGTTTTGA+AGG + chr6.2:1623177-1623196 MS.gene053008:CDS 45.0%
!! GGTGTTTTTGTGCCTGATAG+TGG + chr6.2:1624210-1624229 MS.gene053008:CDS 45.0%
!! TAGTGGCACAGAGAGCATTT+CGG + chr6.2:1624227-1624246 MS.gene053008:CDS 45.0%
!! TATTGCTAGTGTTCTGGAGC+TGG + chr6.2:1624311-1624330 MS.gene053008:CDS 45.0%
!! TCTGGAGCTGGAAGTATTGA+AGG + chr6.2:1624323-1624342 MS.gene053008:CDS 45.0%
!!! GAACCTGATTTTGGGGTCAA+TGG - chr6.2:1624504-1624523 None:intergenic 45.0%
AACGGGAAGGAGAATGAGGA+GGG + chr6.2:1623508-1623527 MS.gene053008:CDS 50.0%
AAGCTGAACCTGGAACTGGA+AGG + chr6.2:1625261-1625280 MS.gene053008:CDS 50.0%
AAGGTAGAGAGCGAGGTGAA+AGG + chr6.2:1625647-1625666 MS.gene053008:CDS 50.0%
AATGACTGAGAAGGAGAGCG+CGG + chr6.2:1623708-1623727 MS.gene053008:CDS 50.0%
AGACACCCCATTATTCACCG+GGG - chr6.2:1623230-1623249 None:intergenic 50.0%
AGCGGAGAGGAAAACGATGA+AGG + chr6.2:1624843-1624862 MS.gene053008:CDS 50.0%
AGTGAACGGGAAGGAGAATG+AGG + chr6.2:1623504-1623523 MS.gene053008:CDS 50.0%
CAAATCGCAGCATTCAGGTG+AGG + chr6.2:1624782-1624801 MS.gene053008:CDS 50.0%
CAAGACAAAGGTAGAGAGCG+AGG + chr6.2:1625640-1625659 MS.gene053008:CDS 50.0%
CTCTCACTTGCCTCCACTAT+TGG - chr6.2:1623676-1623695 None:intergenic 50.0%
CTGCCATTGACCCCAAAATC+AGG + chr6.2:1624498-1624517 MS.gene053008:CDS 50.0%
GCGGAGAGGAAAACGATGAA+GGG + chr6.2:1624844-1624863 MS.gene053008:CDS 50.0%
GGATAGTGAGGAGGGAGAAA+AGG + chr6.2:1623612-1623631 MS.gene053008:CDS 50.0%
GGGACCGATGAAAAATCTGG+AGG + chr6.2:1625434-1625453 MS.gene053008:CDS 50.0%
GGTAATGAGAACATCAGCGG+TGG + chr6.2:1624819-1624838 MS.gene053008:CDS 50.0%
TCAAGTCCGAGAACCCGTTT+GGG - chr6.2:1624408-1624427 None:intergenic 50.0%
TTCAAGTCCGAGAACCCGTT+TGG - chr6.2:1624409-1624428 None:intergenic 50.0%
TTCGGCGGTTACACTTGAAC+CGG + chr6.2:1624245-1624264 MS.gene053008:CDS 50.0%
! AAATGAGGTTGGAAGGGTGC+TGG + chr6.2:1624098-1624117 MS.gene053008:CDS 50.0%
! ATGCTCTCTGTGCCACTATC+AGG - chr6.2:1624225-1624244 None:intergenic 50.0%
! CAGTTGAAGCACCATCCCAA+GGG + chr6.2:1624451-1624470 MS.gene053008:CDS 50.0%
! CGAGGTGAAAGGTCTTTTGG+AGG + chr6.2:1625658-1625677 MS.gene053008:CDS 50.0%
! GAGCGAGGTGAAAGGTCTTT+TGG + chr6.2:1625655-1625674 MS.gene053008:CDS 50.0%
! GATGAGTCGTCCGTTTGTTG+TGG + chr6.2:1624128-1624147 MS.gene053008:CDS 50.0%
! TTTGTGAAGGGAAGAGGTGC+TGG + chr6.2:1624960-1624979 MS.gene053008:CDS 50.0%
!! GAGTAGCGTTTTCGAGACTG+AGG + chr6.2:1623288-1623307 MS.gene053008:CDS 50.0%
AACCAAGACCAGCGGCAAGA+AGG + chr6.2:1625412-1625431 MS.gene053008:CDS 55.0%
ACCAAGACCAGCGGCAAGAA+GGG + chr6.2:1625413-1625432 MS.gene053008:CDS 55.0%
ACCCTGTGACAGAGATGGTG+TGG - chr6.2:1625531-1625550 None:intergenic 55.0%
ACGGGAAGGAGAATGAGGAG+GGG + chr6.2:1623509-1623528 MS.gene053008:CDS 55.0%
AGCCACACCATCTCTGTCAC+AGG + chr6.2:1625526-1625545 MS.gene053008:CDS 55.0%
AGGGGCAAATCGCAGCATTC+AGG + chr6.2:1624777-1624796 MS.gene053008:CDS 55.0%
AGTCCTCTTCAAACGGCCCT+TGG - chr6.2:1624470-1624489 None:intergenic 55.0%
AGTGGAGGCTAGTGAGAGCA+TGG + chr6.2:1623786-1623805 MS.gene053008:CDS 55.0%
ATCCCAAGGGCCGTTTGAAG+AGG + chr6.2:1624464-1624483 MS.gene053008:CDS 55.0%
CATCGCTGACATTATGGGGG+AGG + chr6.2:1624560-1624579 MS.gene053008:CDS 55.0%
GAACGGGAAGGAGAATGAGG+AGG + chr6.2:1623507-1623526 MS.gene053008:CDS 55.0%
GACGGATCATAAACCCGACC+TGG - chr6.2:1623901-1623920 None:intergenic 55.0%
GAGATGGTGTGGCTGGAGTT+AGG - chr6.2:1625520-1625539 None:intergenic 55.0%
GCAAGTTCCGACGCATCAGA+CGG - chr6.2:1623919-1623938 None:intergenic 55.0%
GCCACACCATCTCTGTCACA+GGG + chr6.2:1625527-1625546 MS.gene053008:CDS 55.0%
GCTCGTGAAACCAAGACCAG+CGG + chr6.2:1625404-1625423 MS.gene053008:CDS 55.0%
GCTGGTCCAGAATCTTCGCT+AGG - chr6.2:1625335-1625354 None:intergenic 55.0%
GTCCTCTTCAAACGGCCCTT+GGG - chr6.2:1624469-1624488 None:intergenic 55.0%
GTGCCCCTCCTTGACATTTG+TGG - chr6.2:1625158-1625177 None:intergenic 55.0%
TCGGTACCCTGTGACAGAGA+TGG - chr6.2:1625536-1625555 None:intergenic 55.0%
TCTTCAAACGGCCCTTGGGA+TGG - chr6.2:1624465-1624484 None:intergenic 55.0%
TGTGACAGAGATGGTGTGGC+TGG - chr6.2:1625527-1625546 None:intergenic 55.0%
! GAGGATCCCAAACGGGTTCT+CGG + chr6.2:1624399-1624418 MS.gene053008:CDS 55.0%
! GCAGTTGAAGCACCATCCCA+AGG + chr6.2:1624450-1624469 MS.gene053008:CDS 55.0%
!! AGTCGTCCGTTTGTTGTGGC+GGG + chr6.2:1624132-1624151 MS.gene053008:CDS 55.0%
!! GAGTCGTCCGTTTGTTGTGG+CGG + chr6.2:1624131-1624150 MS.gene053008:CDS 55.0%
!! TGGCACAGAGAGCATTTCGG+CGG + chr6.2:1624230-1624249 MS.gene053008:CDS 55.0%
AAGAGTCATCCGTGGTGGCC+AGG + chr6.2:1623880-1623899 MS.gene053008:CDS 60.0%
CCAAGACCAGCGGCAAGAAG+GGG + chr6.2:1625414-1625433 MS.gene053008:CDS 60.0%
GAGAACATCAGCGGTGGGAG+CGG + chr6.2:1624825-1624844 MS.gene053008:CDS 60.0%
GTCTCCCCCGCCACAACAAA+CGG - chr6.2:1624141-1624160 None:intergenic 60.0%
TAAACCCGACCTGGCCACCA+CGG - chr6.2:1623892-1623911 None:intergenic 60.0%
! ACTGAGAAGGAGAGCGCGGA+AGG + chr6.2:1623712-1623731 MS.gene053008:CDS 60.0%
!! GTCGTCCGTTTGTTGTGGCG+GGG + chr6.2:1624133-1624152 MS.gene053008:CDS 60.0%
!! TCGTCCGTTTGTTGTGGCGG+GGG + chr6.2:1624134-1624153 MS.gene053008:CDS 60.0%
ATCGGTCCCCTTCTTGCCGC+TGG - chr6.2:1625423-1625442 None:intergenic 65.0%
GTCATCCGTGGTGGCCAGGT+CGG + chr6.2:1623884-1623903 MS.gene053008:CDS 65.0%
TCATCCGTGGTGGCCAGGTC+GGG + chr6.2:1623885-1623904 MS.gene053008:CDS 65.0%
! CCCCTTCTTGCCGCTGGTCT+TGG - chr6.2:1625417-1625436 None:intergenic 65.0%
CATCAGCGGTGGGAGCGGAG+AGG + chr6.2:1624830-1624849 MS.gene053008:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 1623046 1625715 1623046 ID=MS.gene053008
chr6.2 mRNA 1623046 1625715 1623046 ID=MS.gene053008.t1;Parent=MS.gene053008
chr6.2 exon 1623046 1625715 1623046 ID=MS.gene053008.t1.exon1;Parent=MS.gene053008.t1
chr6.2 CDS 1623046 1625715 1623046 ID=cds.MS.gene053008.t1;Parent=MS.gene053008.t1
Gene Sequence

>MS.gene053008

ATGGGTGTGGTTGATACTGAATCGATGGAACCATTTGGGGTTGAAACTAGTTTAGCTGAAAATGTTATGGTTGAAGGTTCAGAGCAGGAGAAGAATGAGCTTAAGGAAGTTGTTAAGAGTAGTGTTTTCAAGACTGAGGTTTCGGTTTTGAAGGAGAATGATTCTCAGGTTGTGAATGATTCCCCGGTGAATAATGGGGTGTCTTCTGAGATGAATAATGACGGTGCTGTTGAAGTTGTTAAGAGTAGCGTTTTCGAGACTGAGGTTTCGATTTTGAAGGAGAATGACTCTCAGGTTGTGACTGATTCTGAAGTGAATAATGAGGTGTCTTCTTTGTTGAAAACGGGAGAAAACGATGGAAGCGTCGTCGTTTGTGATAAGAAAGTCAAAGAAGGTGATGAAAAAATTCAGACTGTGGAGATTCCAATTGTGGAGATAAGCGAGAATGTTGATATTGAAGTGAACGGGAAGGAGAATGAGGAGGGGAAAAAAGATGAAAAAATTGCGACTGTTGAGGTTCCAATAGTGGAAACAAGTGAGAACATTGATGTTGAGATGAATGAGAAGGATAGTGAGGAGGGAGAAAAGGGTGAAAATTGTGATGGGAAGATAGAGTCTATTGAGGTACCAATAGTGGAGGCAAGTGAGAGCATCGATGTTGAAATGACTGAGAAGGAGAGCGCGGAAGGAAACAAAGATGACAATTGTGATGGGAAGATCGAGACTATTGAGGATTCAATAGTGGAGGCTAGTGAGAGCATGGATGTTGAAGTTGACGATTTGATTGATGAAAGGTGTGACTTTTCTGTTGGCGATTTTGTTTGGGGAAAGATTAAGAGTCATCCGTGGTGGCCAGGTCGGGTTTATGATCCGTCTGATGCGTCGGAACTTGCTTTAAAGCTGAAACAAAAGAATAGACTCTTGGTAGCTTACTTTGATGGAACATTTGCTTGGTGCCATCCGTCACAATTGAAGCCTTTTAAGGATAATTTTGATGATATGGTGGGACAAGGTAGTTCCAAAGCTTTCACCTATGCTGTTCAAGAAGCTGTAAATGAGGTTGGAAGGGTGCTGGTTACAAAGATGAGTCGTCCGTTTGTTGTGGCGGGGGAGACTAAGTCTGAATTCGCTCCAATGTTGGCGAAAAATTCAGGAATCAAGGAAGGTGTTTTTGTGCCTGATAGTGGCACAGAGAGCATTTCGGCGGTTACACTTGAACCGGCTGAGTTACTTTCTCAAGTGAAACAAATTGCTGAAAGTATTGATATTGCTAGTGTTCTGGAGCTGGAAGTATTGAAGGCTCGGATTTCAGCTTTTTATCTCTCAAAAGGAGGATATAAGTTACCTTGTTATGAGGATCCCAAACGGGTTCTCGGACTTGAAGATAAAGATGATGTCAACAATGCAGTTGAAGCACCATCCCAAGGGCCGTTTGAAGAGGACTACTCTACACTGCCATTGACCCCAAAATCAGGTTCAGGAAGTAGACCGAACCGTAGAAGAAAGCAGAAAAGCATCGCTGACATTATGGGGGAGGAAAAAGATGTTGATGCAAAAGATAAGGAATGGGATGCAAGTGATGATGAAGTTCTGGTTGCAATTAAGTCTAAGGGTAGAAAAAAGAAAAAAGACAACGACGATGCAGGGACATCTGAACCAGTTCAGAAGAGAAAAGAGTTGCTTGCAGGTACTGATACAGAGACTGTAAGAGGTGGAAAAGAAAGCTGTGACAGGGGCAAATCGCAGCATTCAGGTGAGGAAAAAGAAGCTTCTGGTAATGAGAACATCAGCGGTGGGAGCGGAGAGGAAAACGATGAAGGGAAGCCGAAAGAACCAAATGAAAAGGGTTTTTTGTCAAGAGAAAGGAAGAAAAGCAAGTATTTGTCACCTCCTTTCACTACTTCAATCAGAGACTTTGTGAAGGGAAGAGGTGCTGGCCTGCTTTCTCCTCGAGTTTCAAAGTATAACAGTGAGGCATTTCAAGAGTTGGAACTTTCTGTTAGCTTGAATCACCAAACACCAGATGATGAGAAAGAAACCCTTGATCCAGAGAAAGTCAAGGTTCCTTCAGCCGAAATTCTGTCAAAAATTCGCGATGCAGCGCTTAGTCCACAAATGTCAAGGAGGGGCACTTCTTCTGATAGACTTGTAGACTTTGTTTCTGTCATGAGAAGTTCATTGTATCGCGAAGGATCATTACACAAAGAATACAATGAAGCTGAACCTGGAACTGGAAGGAAGAGAAAGAAGCCAGAATCTGAGCTTGATCAATCTGATAACATATCACCTAGCGAAGATTCTGGACCAGCCAAGAAAAGAAAGGAGAGAACTACAAGCTTGTCAAAAATGAAGAAGAGAGCTCGTGAAACCAAGACCAGCGGCAAGAAGGGGACCGATGAAAAATCTGGAGGACAACACACTGAAAGATTAAAGAAGTCCAAACCTTCACAAGACAAGAAGAAAGACAAGCTCCTAACTCCAGCCACACCATCTCTGTCACAGGGTACCGAGACATCTAAGTTGATCGTCATACAGCAGAAACTTCAAGGTCTGGTCTCAATGCTCGAATCATCCGACGACAAATCGCCTGATTTCAAGACAAAGGTAGAGAGCGAGGTGAAAGGTCTTTTGGAGGATGTGAACAACATGGTTGAATCTACTTCGTCGTGA

Protein sequence

>MS.gene053008.t1

MGVVDTESMEPFGVETSLAENVMVEGSEQEKNELKEVVKSSVFKTEVSVLKENDSQVVNDSPVNNGVSSEMNNDGAVEVVKSSVFETEVSILKENDSQVVTDSEVNNEVSSLLKTGENDGSVVVCDKKVKEGDEKIQTVEIPIVEISENVDIEVNGKENEEGKKDEKIATVEVPIVETSENIDVEMNEKDSEEGEKGENCDGKIESIEVPIVEASESIDVEMTEKESAEGNKDDNCDGKIETIEDSIVEASESMDVEVDDLIDERCDFSVGDFVWGKIKSHPWWPGRVYDPSDASELALKLKQKNRLLVAYFDGTFAWCHPSQLKPFKDNFDDMVGQGSSKAFTYAVQEAVNEVGRVLVTKMSRPFVVAGETKSEFAPMLAKNSGIKEGVFVPDSGTESISAVTLEPAELLSQVKQIAESIDIASVLELEVLKARISAFYLSKGGYKLPCYEDPKRVLGLEDKDDVNNAVEAPSQGPFEEDYSTLPLTPKSGSGSRPNRRRKQKSIADIMGEEKDVDAKDKEWDASDDEVLVAIKSKGRKKKKDNDDAGTSEPVQKRKELLAGTDTETVRGGKESCDRGKSQHSGEEKEASGNENISGGSGEENDEGKPKEPNEKGFLSRERKKSKYLSPPFTTSIRDFVKGRGAGLLSPRVSKYNSEAFQELELSVSLNHQTPDDEKETLDPEKVKVPSAEILSKIRDAALSPQMSRRGTSSDRLVDFVSVMRSSLYREGSLHKEYNEAEPGTGRKRKKPESELDQSDNISPSEDSGPAKKRKERTTSLSKMKKRARETKTSGKKGTDEKSGGQHTERLKKSKPSQDKKKDKLLTPATPSLSQGTETSKLIVIQQKLQGLVSMLESSDDKSPDFKTKVESEVKGLLEDVNNMVESTSS