Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24917.t1 | XP_024637381.1 | 93.8 | 436 | 27 | 0 | 1 | 436 | 123 | 558 | 2.70E-208 | 734.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24917.t1 | Q93YU8 | 26.4 | 428 | 295 | 7 | 2 | 414 | 356 | 778 | 4.8e-28 | 127.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24917.t1 | A0A396I358 | 93.8 | 436 | 27 | 0 | 1 | 436 | 123 | 558 | 2.0e-208 | 734.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054651 | MS.gene24917 | 0.810139 | 1.34E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene24917 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene24917 | 0.802179 | 6.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24917.t1 | MTR_4g012430 | 96.410 | 390 | 14 | 0 | 1 | 390 | 123 | 512 | 0.0 | 773 |
| MS.gene24917.t1 | MTR_2g102050 | 57.273 | 440 | 177 | 5 | 1 | 432 | 320 | 756 | 2.10e-168 | 491 |
| MS.gene24917.t1 | MTR_3g109450 | 53.759 | 439 | 191 | 4 | 3 | 434 | 277 | 710 | 1.38e-158 | 465 |
| MS.gene24917.t1 | MTR_8g006850 | 31.336 | 434 | 271 | 10 | 2 | 414 | 278 | 705 | 3.33e-46 | 170 |
| MS.gene24917.t1 | MTR_7g081705 | 31.765 | 340 | 223 | 3 | 82 | 414 | 488 | 825 | 1.36e-44 | 166 |
| MS.gene24917.t1 | MTR_5g022530 | 28.704 | 432 | 288 | 8 | 2 | 421 | 205 | 628 | 1.20e-42 | 159 |
| MS.gene24917.t1 | MTR_1g112850 | 24.839 | 467 | 303 | 12 | 2 | 433 | 275 | 728 | 2.56e-33 | 133 |
| MS.gene24917.t1 | MTR_2g048360 | 26.777 | 422 | 291 | 8 | 6 | 419 | 213 | 624 | 1.36e-30 | 124 |
| MS.gene24917.t1 | MTR_3g096950 | 26.058 | 449 | 297 | 11 | 1 | 426 | 340 | 776 | 9.48e-29 | 119 |
| MS.gene24917.t1 | MTR_3g078830 | 28.000 | 300 | 180 | 3 | 2 | 265 | 328 | 627 | 1.77e-27 | 115 |
| MS.gene24917.t1 | MTR_5g087740 | 27.931 | 290 | 169 | 3 | 14 | 265 | 324 | 611 | 2.69e-26 | 112 |
| MS.gene24917.t1 | MTR_8g091250 | 25.140 | 358 | 222 | 8 | 2 | 316 | 269 | 623 | 3.78e-26 | 111 |
| MS.gene24917.t1 | MTR_4g127620 | 27.893 | 337 | 206 | 10 | 2 | 311 | 336 | 662 | 7.51e-26 | 110 |
| MS.gene24917.t1 | MTR_3g088190 | 21.767 | 464 | 307 | 10 | 2 | 426 | 455 | 901 | 9.29e-26 | 110 |
| MS.gene24917.t1 | MTR_5g098980 | 25.434 | 346 | 228 | 9 | 2 | 324 | 355 | 693 | 4.16e-22 | 99.8 |
| MS.gene24917.t1 | MTR_2g036920 | 31.687 | 243 | 144 | 6 | 86 | 308 | 570 | 810 | 1.22e-21 | 98.2 |
| MS.gene24917.t1 | MTR_2g036920 | 31.687 | 243 | 144 | 6 | 86 | 308 | 599 | 839 | 1.41e-21 | 98.2 |
| MS.gene24917.t1 | MTR_3g115120 | 24.711 | 433 | 281 | 12 | 5 | 424 | 279 | 679 | 1.14e-20 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24917.t1 | AT1G52320 | 52.500 | 440 | 199 | 4 | 3 | 435 | 25 | 461 | 1.45e-155 | 449 |
| MS.gene24917.t1 | AT1G52320 | 52.500 | 440 | 199 | 4 | 3 | 435 | 25 | 461 | 1.45e-155 | 449 |
| MS.gene24917.t1 | AT1G52320 | 52.500 | 440 | 199 | 4 | 3 | 435 | 328 | 764 | 1.65e-152 | 451 |
| MS.gene24917.t1 | AT1G52320 | 52.500 | 440 | 199 | 4 | 3 | 435 | 351 | 787 | 3.40e-152 | 451 |
| MS.gene24917.t1 | AT1G52320 | 52.500 | 440 | 199 | 4 | 3 | 435 | 351 | 787 | 3.40e-152 | 451 |
| MS.gene24917.t1 | AT5G25590 | 49.083 | 436 | 212 | 5 | 1 | 428 | 329 | 762 | 1.70e-133 | 402 |
| MS.gene24917.t1 | AT3G51290 | 29.754 | 447 | 280 | 12 | 2 | 432 | 201 | 629 | 2.06e-45 | 167 |
| MS.gene24917.t1 | AT3G51290 | 29.754 | 447 | 280 | 12 | 2 | 432 | 201 | 629 | 5.43e-45 | 167 |
| MS.gene24917.t1 | AT1G02110 | 29.318 | 440 | 283 | 9 | 2 | 422 | 271 | 701 | 5.51e-40 | 152 |
| MS.gene24917.t1 | AT3G51290 | 29.083 | 447 | 277 | 13 | 2 | 432 | 201 | 623 | 7.25e-40 | 151 |
| MS.gene24917.t1 | AT3G60320 | 31.195 | 343 | 224 | 5 | 82 | 414 | 438 | 778 | 1.13e-36 | 143 |
| MS.gene24917.t1 | AT1G77500 | 24.558 | 452 | 285 | 9 | 2 | 426 | 450 | 872 | 4.83e-30 | 124 |
| MS.gene24917.t1 | AT2G27090 | 26.216 | 370 | 227 | 7 | 2 | 326 | 308 | 676 | 8.22e-28 | 117 |
| MS.gene24917.t1 | AT2G27090 | 26.216 | 370 | 227 | 7 | 2 | 326 | 308 | 676 | 8.22e-28 | 117 |
| MS.gene24917.t1 | AT1G21740 | 23.441 | 465 | 297 | 9 | 2 | 426 | 498 | 943 | 1.89e-27 | 115 |
| MS.gene24917.t1 | AT4G35240 | 21.205 | 448 | 282 | 10 | 5 | 424 | 423 | 827 | 1.10e-21 | 98.6 |
| MS.gene24917.t1 | AT4G35240 | 21.205 | 448 | 282 | 10 | 5 | 424 | 423 | 827 | 1.10e-21 | 98.6 |
| MS.gene24917.t1 | AT4G35240 | 21.205 | 448 | 282 | 10 | 5 | 424 | 423 | 827 | 1.11e-21 | 98.6 |
| MS.gene24917.t1 | AT4G35240 | 21.205 | 448 | 282 | 10 | 5 | 424 | 423 | 827 | 1.11e-21 | 98.6 |
| MS.gene24917.t1 | AT2G34670 | 25.298 | 336 | 238 | 5 | 85 | 414 | 336 | 664 | 1.97e-21 | 97.4 |
| MS.gene24917.t1 | AT4G39790 | 22.466 | 365 | 227 | 9 | 2 | 314 | 252 | 612 | 3.70e-21 | 96.7 |
| MS.gene24917.t1 | AT2G17110 | 23.313 | 326 | 220 | 7 | 5 | 306 | 313 | 632 | 2.09e-20 | 94.4 |
| MS.gene24917.t1 | AT2G19090 | 27.485 | 342 | 211 | 9 | 3 | 311 | 387 | 724 | 9.75e-19 | 89.4 |
| MS.gene24917.t1 | AT5G54480 | 24.194 | 434 | 281 | 14 | 2 | 427 | 325 | 718 | 2.05e-17 | 85.1 |
| MS.gene24917.t1 | AT2G34670 | 29.187 | 209 | 137 | 4 | 85 | 287 | 336 | 539 | 1.81e-16 | 82.0 |
| MS.gene24917.t1 | AT1G20530 | 25.676 | 296 | 188 | 7 | 2 | 283 | 232 | 509 | 1.85e-15 | 79.0 |
| MS.gene24917.t1 | AT4G30130 | 28.099 | 242 | 157 | 5 | 86 | 311 | 401 | 641 | 1.04e-13 | 73.9 |
| MS.gene24917.t1 | AT4G30130 | 28.099 | 242 | 157 | 5 | 86 | 311 | 401 | 641 | 1.04e-13 | 73.9 |
Find 52 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCACTTCATCAGTATT+TGG | 0.203600 | 4.1:-83669353 | None:intergenic |
| TCGTTGTATCACTCTCAATA+AGG | 0.262337 | 4.1:-83670638 | None:intergenic |
| TGATAGTTAACTGCTTCTTA+TGG | 0.300998 | 4.1:-83670437 | None:intergenic |
| TGCAAGGGAGAAGAGAGTTT+TGG | 0.328503 | 4.1:+83670959 | MS.gene24917:CDS |
| CAGTGTTTCTGTAATTCTTC+AGG | 0.328526 | 4.1:+83669077 | MS.gene24917:CDS |
| AAAAGCAGCACTGAGTCATT+TGG | 0.345022 | 4.1:+83669735 | MS.gene24917:CDS |
| CGTTGTATCACTCTCAATAA+GGG | 0.347533 | 4.1:-83670637 | None:intergenic |
| TACAAATCCTTCTTCATGCT+TGG | 0.366749 | 4.1:+83670682 | MS.gene24917:CDS |
| GCTATTCTAGCTTGTTCATC+AGG | 0.385769 | 4.1:-83670726 | None:intergenic |
| TCAACAAGCTGCACAAGTTT+CGG | 0.397233 | 4.1:-83669838 | None:intergenic |
| GAAACTATATAGTGAAGTTA+AGG | 0.401251 | 4.1:+83669442 | MS.gene24917:CDS |
| AGGTTTGTAGCACATAGATT+AGG | 0.406861 | 4.1:+83671143 | MS.gene24917:CDS |
| CTCTTCTCCCTTGCAACCTC+AGG | 0.416697 | 4.1:-83670951 | None:intergenic |
| TCATCAAAGCCTTATATAGT+TGG | 0.423802 | 4.1:+83670598 | MS.gene24917:CDS |
| AAACTTGTGCAGCTTGTTGA+TGG | 0.440917 | 4.1:+83669841 | MS.gene24917:CDS |
| GATGAATTTGATCGAAATAG+AGG | 0.443881 | 4.1:+83670906 | MS.gene24917:CDS |
| AAAGCAAGCGATTTGATCAA+TGG | 0.468008 | 4.1:+83670853 | MS.gene24917:CDS |
| CTTCTTATGGTGGGAATGCA+TGG | 0.485259 | 4.1:-83670424 | None:intergenic |
| AAGCAAGCGATTTGATCAAT+GGG | 0.493574 | 4.1:+83670854 | MS.gene24917:CDS |
| AGTATTTGGTGTTTCTCTGA+AGG | 0.495516 | 4.1:-83669339 | None:intergenic |
| ACTAGAGAAGAGGTTGGATG+AGG | 0.509562 | 4.1:+83670986 | MS.gene24917:CDS |
| GGTTGAACTAGAGAAGAGGT+TGG | 0.517571 | 4.1:+83670980 | MS.gene24917:CDS |
| TTCTCCCTTGCAACCTCAGG+AGG | 0.519238 | 4.1:-83670948 | None:intergenic |
| GTTGAATGTTATGCAAGAGT+TGG | 0.519426 | 4.1:+83670536 | MS.gene24917:CDS |
| TATTAGACAAGTTGCTAGCA+TGG | 0.520537 | 4.1:+83669414 | MS.gene24917:CDS |
| TCACCCTTGCGGAGTAATCA+AGG | 0.532811 | 4.1:-83669292 | None:intergenic |
| GATCATTCCAAGCATGAAGA+AGG | 0.533691 | 4.1:-83670689 | None:intergenic |
| ATGATCCTCCTGAGGTTGCA+AGG | 0.536858 | 4.1:+83670943 | MS.gene24917:CDS |
| CACGGCAGCGAAATGTGATA+AGG | 0.541959 | 4.1:-83670748 | None:intergenic |
| CTTATCACATTTCGCTGCCG+TGG | 0.548549 | 4.1:+83670749 | MS.gene24917:CDS |
| GGGTGATGCGAGTTGTAACA+TGG | 0.550646 | 4.1:+83669309 | MS.gene24917:CDS |
| TAGTTAACTGCTTCTTATGG+TGG | 0.551259 | 4.1:-83670434 | None:intergenic |
| AGTTAACTGCTTCTTATGGT+GGG | 0.553032 | 4.1:-83670433 | None:intergenic |
| AGCATGAAGAAGGATTTGTA+AGG | 0.557102 | 4.1:-83670679 | None:intergenic |
| AACTTGTGCAGCTTGTTGAT+GGG | 0.558129 | 4.1:+83669842 | MS.gene24917:CDS |
| TGCGAGTTGTAACATGGGAC+AGG | 0.561904 | 4.1:+83669315 | MS.gene24917:CDS |
| TGGTGTTCACTTGTTTCCGT+AGG | 0.572182 | 4.1:-83670492 | None:intergenic |
| ACTAGATTCTCAGTTTCCTA+CGG | 0.575162 | 4.1:+83670476 | MS.gene24917:CDS |
| AGGTTCACACATTGAAACAT+TGG | 0.583232 | 4.1:+83669705 | MS.gene24917:CDS |
| TGATCCTCCTGAGGTTGCAA+GGG | 0.597802 | 4.1:+83670944 | MS.gene24917:CDS |
| ATTAGACAAGTTGCTAGCAT+GGG | 0.599550 | 4.1:+83669415 | MS.gene24917:CDS |
| ACTGATATGTTCTATCATGA+TGG | 0.604476 | 4.1:-83670512 | None:intergenic |
| GACACCTTGATTACTCCGCA+AGG | 0.640024 | 4.1:+83669288 | MS.gene24917:CDS |
| ATGCATGGTTCTCCACATTG+TGG | 0.645063 | 4.1:-83670409 | None:intergenic |
| GCATGAAGAAGGATTTGTAA+GGG | 0.648368 | 4.1:-83670678 | None:intergenic |
| ACACCTTGATTACTCCGCAA+GGG | 0.659066 | 4.1:+83669289 | MS.gene24917:CDS |
| TACAACTCGCATCACCCTTG+CGG | 0.661274 | 4.1:-83669303 | None:intergenic |
| TGATATTAATGATCCTCCTG+AGG | 0.685983 | 4.1:+83670935 | MS.gene24917:CDS |
| GGTGATGCGAGTTGTAACAT+GGG | 0.702721 | 4.1:+83669310 | MS.gene24917:CDS |
| AAAATGCGAGGAGATACGAA+AGG | 0.709702 | 4.1:+83670818 | MS.gene24917:CDS |
| AATACAGGATGGCCACAATG+TGG | 0.720097 | 4.1:+83670397 | MS.gene24917:intron |
| TTGATAAAGAGAATCTACCA+CGG | 0.741725 | 4.1:-83670766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGAAATTAAAGAAAGTA+TGG | - | chr4.1:83669523-83669542 | None:intergenic | 15.0% |
| !!! | AAAGTTGATAAAAAATCAAA+AGG | + | chr4.1:83670572-83670591 | MS.gene24917:CDS | 15.0% |
| !!! | AAGTTGATAAAAAATCAAAA+GGG | + | chr4.1:83670573-83670592 | MS.gene24917:CDS | 15.0% |
| !!! | AGTTGATAATCATTTTATAA+TGG | + | chr4.1:83669038-83669057 | MS.gene24917:CDS | 15.0% |
| !!! | ATTTTGTATTTTTCTTTTTC+AGG | + | chr4.1:83669266-83669285 | MS.gene24917:intron | 15.0% |
| !! | TAATTATGGTTAAGTACTAA+TGG | + | chr4.1:83669177-83669196 | MS.gene24917:intron | 20.0% |
| ! | AAAATCTGAGTACCAAAAAA+CGG | + | chr4.1:83669654-83669673 | MS.gene24917:CDS | 25.0% |
| ! | CAAAAATGTACAGTGAATTA+AGG | + | chr4.1:83671123-83671142 | MS.gene24917:CDS | 25.0% |
| ! | GAAACTATATAGTGAAGTTA+AGG | + | chr4.1:83669442-83669461 | MS.gene24917:CDS | 25.0% |
| ! | GCATGTTAATAGAGTAATTA+TGG | + | chr4.1:83669163-83669182 | MS.gene24917:intron | 25.0% |
| ! | TGTAGAAACTTATGTGATAT+AGG | + | chr4.1:83669472-83669491 | MS.gene24917:intron | 25.0% |
| !! | TACAATTCAGTTTTCTGTAA+AGG | + | chr4.1:83670222-83670241 | MS.gene24917:intron | 25.0% |
| !! | TCTATTAACATGCATTTTTG+TGG | - | chr4.1:83669156-83669175 | None:intergenic | 25.0% |
| !!! | AGTGAAAGATGATTTTGATT+CGG | + | chr4.1:83669367-83669386 | MS.gene24917:CDS | 25.0% |
| !!! | CAGTTTTAACCAACTATATA+AGG | - | chr4.1:83670610-83670629 | None:intergenic | 25.0% |
| !!! | CTTCGTTTGATTTAATGTTT+TGG | + | chr4.1:83670083-83670102 | MS.gene24917:intron | 25.0% |
| ACTGATATGTTCTATCATGA+TGG | - | chr4.1:83670515-83670534 | None:intergenic | 30.0% | |
| GATGAATTTGATCGAAATAG+AGG | + | chr4.1:83670906-83670925 | MS.gene24917:CDS | 30.0% | |
| TATTGCCATGCAAAATTGTT+AGG | + | chr4.1:83669927-83669946 | MS.gene24917:intron | 30.0% | |
| TCTTTCACTTCATCAGTATT+TGG | - | chr4.1:83669356-83669375 | None:intergenic | 30.0% | |
| TGACTAGCATAACAATTATC+CGG | - | chr4.1:83670338-83670357 | None:intergenic | 30.0% | |
| TGATAGTTAACTGCTTCTTA+TGG | - | chr4.1:83670440-83670459 | None:intergenic | 30.0% | |
| TGCTAATATACAGTTCAACT+TGG | + | chr4.1:83670128-83670147 | MS.gene24917:intron | 30.0% | |
| TTGATAAAGAGAATCTACCA+CGG | - | chr4.1:83670769-83670788 | None:intergenic | 30.0% | |
| ! | AAATCGACGAACTTTTGTAA+AGG | - | chr4.1:83670289-83670308 | None:intergenic | 30.0% |
| ! | TCATCAAAGCCTTATATAGT+TGG | + | chr4.1:83670598-83670617 | MS.gene24917:CDS | 30.0% |
| !! | GATTTTAAAGAGAAAATGCG+AGG | + | chr4.1:83670806-83670825 | MS.gene24917:CDS | 30.0% |
| !!! | GATGTTTTTTCATGCAATAC+AGG | + | chr4.1:83670382-83670401 | MS.gene24917:intron | 30.0% |
| !!! | TTTTTTCATGCAATACAGGA+TGG | + | chr4.1:83670386-83670405 | MS.gene24917:intron | 30.0% |
| AAAAACAGTGCTTACATGTG+AGG | + | chr4.1:83671024-83671043 | MS.gene24917:CDS | 35.0% | |
| AAAGCAAGCGATTTGATCAA+TGG | + | chr4.1:83670853-83670872 | MS.gene24917:CDS | 35.0% | |
| AAGCAAGCGATTTGATCAAT+GGG | + | chr4.1:83670854-83670873 | MS.gene24917:CDS | 35.0% | |
| ACAATTATCCGGACTATTCA+TGG | - | chr4.1:83670327-83670346 | None:intergenic | 35.0% | |
| ACTAGATTCTCAGTTTCCTA+CGG | + | chr4.1:83670476-83670495 | MS.gene24917:CDS | 35.0% | |
| AGCATGAAGAAGGATTTGTA+AGG | - | chr4.1:83670682-83670701 | None:intergenic | 35.0% | |
| AGGTTCACACATTGAAACAT+TGG | + | chr4.1:83669705-83669724 | MS.gene24917:CDS | 35.0% | |
| AGGTTTGTAGCACATAGATT+AGG | + | chr4.1:83671143-83671162 | MS.gene24917:CDS | 35.0% | |
| AGTTAACTGCTTCTTATGGT+GGG | - | chr4.1:83670436-83670455 | None:intergenic | 35.0% | |
| ATCGACAAGCTAGAAAAAAG+AGG | + | chr4.1:83669685-83669704 | MS.gene24917:CDS | 35.0% | |
| ATTAGACAAGTTGCTAGCAT+GGG | + | chr4.1:83669415-83669434 | MS.gene24917:CDS | 35.0% | |
| CGTTGTATCACTCTCAATAA+GGG | - | chr4.1:83670640-83670659 | None:intergenic | 35.0% | |
| GCAGCTGAATATTGTTTCAT+AGG | + | chr4.1:83669618-83669637 | MS.gene24917:intron | 35.0% | |
| GCATGAAGAAGGATTTGTAA+GGG | - | chr4.1:83670681-83670700 | None:intergenic | 35.0% | |
| GTTGAATGTTATGCAAGAGT+TGG | + | chr4.1:83670536-83670555 | MS.gene24917:CDS | 35.0% | |
| TACAAATCCTTCTTCATGCT+TGG | + | chr4.1:83670682-83670701 | MS.gene24917:CDS | 35.0% | |
| TAGTTAACTGCTTCTTATGG+TGG | - | chr4.1:83670437-83670456 | None:intergenic | 35.0% | |
| TATTAGACAAGTTGCTAGCA+TGG | + | chr4.1:83669414-83669433 | MS.gene24917:CDS | 35.0% | |
| TCGTTGTATCACTCTCAATA+AGG | - | chr4.1:83670641-83670660 | None:intergenic | 35.0% | |
| TGATATTAATGATCCTCCTG+AGG | + | chr4.1:83670935-83670954 | MS.gene24917:CDS | 35.0% | |
| ! | AATTTTTCTGACACTGCTAG+AGG | + | chr4.1:83669123-83669142 | MS.gene24917:CDS | 35.0% |
| ! | ACCATCCTAACAATTTTGCA+TGG | - | chr4.1:83669935-83669954 | None:intergenic | 35.0% |
| ! | AGAACAGAACAAAAAGTGTG+TGG | - | chr4.1:83669591-83669610 | None:intergenic | 35.0% |
| ! | CAGTGTTTCTGTAATTCTTC+AGG | + | chr4.1:83669077-83669096 | MS.gene24917:CDS | 35.0% |
| ! | GTTTTCTGTAAAGGTAGTCT+TGG | + | chr4.1:83670231-83670250 | MS.gene24917:intron | 35.0% |
| !! | AGTATTTGGTGTTTCTCTGA+AGG | - | chr4.1:83669342-83669361 | None:intergenic | 35.0% |
| !! | ATACAGTTCAACTTGGCTTT+TGG | + | chr4.1:83670135-83670154 | MS.gene24917:intron | 35.0% |
| !! | TATCACAGTTTGGTTCTTTC+AGG | + | chr4.1:83670055-83670074 | MS.gene24917:intron | 35.0% |
| !! | TTTTGGTTGAACTAGAGAAG+AGG | + | chr4.1:83670976-83670995 | MS.gene24917:CDS | 35.0% |
| !!! | TAGCTTGCTAGAGCTTTTAA+AGG | + | chr4.1:83671073-83671092 | MS.gene24917:CDS | 35.0% |
| AAAATGCGAGGAGATACGAA+AGG | + | chr4.1:83670818-83670837 | MS.gene24917:CDS | 40.0% | |
| CTACTAGTGTTGTCAAGGAA+GGG | + | chr4.1:83669203-83669222 | MS.gene24917:intron | 40.0% | |
| GATCATTCCAAGCATGAAGA+AGG | - | chr4.1:83670692-83670711 | None:intergenic | 40.0% | |
| GCCATGCAAAATTGTTAGGA+TGG | + | chr4.1:83669931-83669950 | MS.gene24917:intron | 40.0% | |
| GCGAACTATCTATCACAGTT+TGG | + | chr4.1:83670045-83670064 | MS.gene24917:intron | 40.0% | |
| GTGAACTGCACATCATAGTT+TGG | - | chr4.1:83670000-83670019 | None:intergenic | 40.0% | |
| TATCCGGACTATTCATGGTT+CGG | - | chr4.1:83670322-83670341 | None:intergenic | 40.0% | |
| TCAACAAGCTGCACAAGTTT+CGG | - | chr4.1:83669841-83669860 | None:intergenic | 40.0% | |
| TCGGTTCACAAACATGGATT+CGG | + | chr4.1:83670255-83670274 | MS.gene24917:intron | 40.0% | |
| ! | AAAAGCAGCACTGAGTCATT+TGG | + | chr4.1:83669735-83669754 | MS.gene24917:CDS | 40.0% |
| ! | CTGTAAAGGTAGTCTTGGTT+CGG | + | chr4.1:83670236-83670255 | MS.gene24917:intron | 40.0% |
| ! | TGGTTCTTTTCAGTGCAGTT+CGG | - | chr4.1:83669980-83669999 | None:intergenic | 40.0% |
| !! | AAACTTGTGCAGCTTGTTGA+TGG | + | chr4.1:83669841-83669860 | MS.gene24917:CDS | 40.0% |
| !! | AACTTGTGCAGCTTGTTGAT+GGG | + | chr4.1:83669842-83669861 | MS.gene24917:CDS | 40.0% |
| !! | GCTATTCTAGCTTGTTCATC+AGG | - | chr4.1:83670729-83670748 | None:intergenic | 40.0% |
| !!! | CGATAGTAGCAACCGTTTTT+TGG | - | chr4.1:83669669-83669688 | None:intergenic | 40.0% |
| AATACAGGATGGCCACAATG+TGG | + | chr4.1:83670397-83670416 | MS.gene24917:intron | 45.0% | |
| ACACCTTGATTACTCCGCAA+GGG | + | chr4.1:83669289-83669308 | MS.gene24917:CDS | 45.0% | |
| ACTAGAGAAGAGGTTGGATG+AGG | + | chr4.1:83670986-83671005 | MS.gene24917:CDS | 45.0% | |
| AGATAGTTCGCGAACTGAAC+TGG | - | chr4.1:83670036-83670055 | None:intergenic | 45.0% | |
| ATGCATGGTTCTCCACATTG+TGG | - | chr4.1:83670412-83670431 | None:intergenic | 45.0% | |
| GAACCGAACCATGAATAGTC+CGG | + | chr4.1:83670316-83670335 | MS.gene24917:intron | 45.0% | |
| GCTACTAGTGTTGTCAAGGA+AGG | + | chr4.1:83669202-83669221 | MS.gene24917:intron | 45.0% | |
| GGTGATGCGAGTTGTAACAT+GGG | + | chr4.1:83669310-83669329 | MS.gene24917:CDS | 45.0% | |
| GGTTGAACTAGAGAAGAGGT+TGG | + | chr4.1:83670980-83670999 | MS.gene24917:CDS | 45.0% | |
| GGTTGCTACTAGTGTTGTCA+AGG | + | chr4.1:83669198-83669217 | MS.gene24917:intron | 45.0% | |
| TGGTGTTCACTTGTTTCCGT+AGG | - | chr4.1:83670495-83670514 | None:intergenic | 45.0% | |
| ! | CTTCTTATGGTGGGAATGCA+TGG | - | chr4.1:83670427-83670446 | None:intergenic | 45.0% |
| ! | TGCAAGGGAGAAGAGAGTTT+TGG | + | chr4.1:83670959-83670978 | MS.gene24917:CDS | 45.0% |
| !! | CTTGGTTCGGTTCACAAACA+TGG | + | chr4.1:83670249-83670268 | MS.gene24917:intron | 45.0% |
| !! | GACTATTCATGGTTCGGTTC+AGG | - | chr4.1:83670316-83670335 | None:intergenic | 45.0% |
| ATGATCCTCCTGAGGTTGCA+AGG | + | chr4.1:83670943-83670962 | MS.gene24917:CDS | 50.0% | |
| CACGGCAGCGAAATGTGATA+AGG | - | chr4.1:83670751-83670770 | None:intergenic | 50.0% | |
| CAGTGCAGTTCGGTTCTGTT+CGG | - | chr4.1:83669970-83669989 | None:intergenic | 50.0% | |
| CTTATCACATTTCGCTGCCG+TGG | + | chr4.1:83670749-83670768 | MS.gene24917:CDS | 50.0% | |
| GACACCTTGATTACTCCGCA+AGG | + | chr4.1:83669288-83669307 | MS.gene24917:CDS | 50.0% | |
| GGGTGATGCGAGTTGTAACA+TGG | + | chr4.1:83669309-83669328 | MS.gene24917:CDS | 50.0% | |
| TACAACTCGCATCACCCTTG+CGG | - | chr4.1:83669306-83669325 | None:intergenic | 50.0% | |
| TCACCCTTGCGGAGTAATCA+AGG | - | chr4.1:83669295-83669314 | None:intergenic | 50.0% | |
| TGATCCTCCTGAGGTTGCAA+GGG | + | chr4.1:83670944-83670963 | MS.gene24917:CDS | 50.0% | |
| TGCGAGTTGTAACATGGGAC+AGG | + | chr4.1:83669315-83669334 | MS.gene24917:CDS | 50.0% | |
| CTCTTCTCCCTTGCAACCTC+AGG | - | chr4.1:83670954-83670973 | None:intergenic | 55.0% | |
| TTCTCCCTTGCAACCTCAGG+AGG | - | chr4.1:83670951-83670970 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 83669012 | 83671181 | 83669012 | ID=MS.gene24917 |
| chr4.1 | mRNA | 83669012 | 83671181 | 83669012 | ID=MS.gene24917.t1;Parent=MS.gene24917 |
| chr4.1 | exon | 83669012 | 83669144 | 83669012 | ID=MS.gene24917.t1.exon1;Parent=MS.gene24917.t1 |
| chr4.1 | CDS | 83669012 | 83669144 | 83669012 | ID=cds.MS.gene24917.t1;Parent=MS.gene24917.t1 |
| chr4.1 | exon | 83669288 | 83669463 | 83669288 | ID=MS.gene24917.t1.exon2;Parent=MS.gene24917.t1 |
| chr4.1 | CDS | 83669288 | 83669463 | 83669288 | ID=cds.MS.gene24917.t1;Parent=MS.gene24917.t1 |
| chr4.1 | exon | 83669640 | 83669863 | 83669640 | ID=MS.gene24917.t1.exon3;Parent=MS.gene24917.t1 |
| chr4.1 | CDS | 83669640 | 83669863 | 83669640 | ID=cds.MS.gene24917.t1;Parent=MS.gene24917.t1 |
| chr4.1 | exon | 83670404 | 83671181 | 83670404 | ID=MS.gene24917.t1.exon4;Parent=MS.gene24917.t1 |
| chr4.1 | CDS | 83670404 | 83671181 | 83670404 | ID=cds.MS.gene24917.t1;Parent=MS.gene24917.t1 |
| Gene Sequence |
| Protein sequence |
