AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054651


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054651.t1 MTR_3g102840 84.862 218 23 3 43 251 20 236 2.34e-115 333
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054651.t1 AT5G43130 62.557 219 71 4 43 250 512 730 3.57e-72 235
MS.gene054651.t1 AT5G43130 62.557 219 71 4 43 250 512 730 6.43e-72 235
MS.gene054651.t1 AT5G43130 62.557 219 71 4 43 250 512 730 1.36e-71 234
MS.gene054651.t1 AT1G27720 53.589 209 85 5 49 251 381 583 5.39e-53 182
MS.gene054651.t1 AT1G27720 53.589 209 85 5 49 251 386 588 5.79e-53 182
MS.gene054651.t1 AT1G27720 53.589 209 85 5 49 251 386 588 5.79e-53 182
MS.gene054651.t1 AT1G27720 53.589 209 85 5 49 251 404 606 7.14e-53 182
MS.gene054651.t1 AT1G27720 53.589 209 85 5 49 251 429 631 1.06e-52 181
MS.gene054651.t1 AT1G27720 53.589 209 85 5 49 251 444 646 1.10e-52 182
MS.gene054651.t1 AT1G27720 52.459 183 75 5 49 225 386 562 5.28e-49 169
MS.gene054651.t1 AT1G27720 52.459 183 75 5 49 225 386 562 5.28e-49 169
MS.gene054651.t1 AT1G27720 52.459 183 75 5 49 225 429 605 1.15e-48 169

Find 52 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTAGTGGTGTTGATCTT+AGG 0.200282 3.4:-90549785 MS.gene054651:CDS
TCAGACTTTCCTCCTCTTCT+TGG 0.210744 3.4:+90549595 None:intergenic
AACCCACATCATTTAGTTTC+CGG 0.293138 3.4:+90549005 None:intergenic
GCAAAATGGGAAGCAGTATT+TGG 0.299631 3.4:+90551094 None:intergenic
TAATTCTGGTCAAAATGAAC+AGG 0.399230 3.4:-90551216 None:intergenic
TTAATGCATTGTAGGTGAAC+AGG 0.399482 3.4:-90548681 MS.gene054651:intron
GATCTGGTTGAGATGCAAAA+TGG 0.404769 3.4:+90551080 None:intergenic
TGGCAGCCCGAGCTGCTGTT+GGG 0.426995 3.4:-90548621 MS.gene054651:CDS
GAAACAAAAGGTGTCATCTC+TGG 0.429956 3.4:-90549841 MS.gene054651:CDS
TGTTAGTGGTGTTGATCTTA+GGG 0.434851 3.4:-90549784 MS.gene054651:intron
CATAATTAGAATGTCAAAAC+AGG 0.436843 3.4:-90549239 MS.gene054651:intron
AATGATGTTACGGCTGTTAG+TGG 0.455727 3.4:-90549798 MS.gene054651:CDS
GTCAAAATGAACAGGGGTAG+TGG 0.463920 3.4:-90551208 None:intergenic
AGCAAATCATGACAATGAAT+AGG 0.467989 3.4:-90549078 MS.gene054651:CDS
TGATCAGCTTAATGATGTTA+CGG 0.473692 3.4:-90549808 MS.gene054651:CDS
CTTACAGAGACAGTTGGATC+TGG 0.481792 3.4:+90551064 None:intergenic
TGAAACTCGACTGTCATCCT+TGG 0.483691 3.4:+90549638 None:intergenic
GTGGCAGCCCGAGCTGCTGT+TGG 0.487103 3.4:-90548622 MS.gene054651:CDS
ATAGGAAAGCAAGGGAAGAG+TGG 0.498133 3.4:-90549060 MS.gene054651:CDS
ATCTGGTTGAGATGCAAAAT+GGG 0.513802 3.4:+90551081 None:intergenic
ATCCTACAGTAAGAAACAAA+AGG 0.523762 3.4:-90549853 MS.gene054651:intron
TCATTAAGCTGATCAATGCT+TGG 0.527111 3.4:+90549816 None:intergenic
GTGACCGAGTGTGGCTTGAA+AGG 0.539175 3.4:-90549408 MS.gene054651:CDS
GGCAGCCCGAGCTGCTGTTG+GGG 0.539687 3.4:-90548620 MS.gene054651:CDS
TGACAATGAATAGGAAAGCA+AGG 0.552373 3.4:-90549069 MS.gene054651:CDS
TTCTTTAGCATCCACTAGCA+TGG 0.561413 3.4:-90551146 MS.gene054651:CDS
GAGTGTGGCTTGAAAGGCAT+GGG 0.570129 3.4:-90549402 MS.gene054651:CDS
TTGTAACTTACAGAGACAGT+TGG 0.570686 3.4:+90551058 None:intergenic
GGAAAGCAAGGGAAGAGTGG+AGG 0.570985 3.4:-90549057 MS.gene054651:CDS
AGGGGTAGTGGTATCAATCA+AGG 0.571106 3.4:-90551196 MS.gene054651:CDS
GCAGCCCGAGCTGCTGTTGG+GGG 0.585228 3.4:-90548619 MS.gene054651:CDS
TATCAATCAAGGCACTGTAA+AGG 0.585256 3.4:-90551185 MS.gene054651:CDS
GGGAAGTAGATGACAAAATG+AGG 0.590649 3.4:-90548660 MS.gene054651:CDS
CATGCCTTTCAAGCCACACT+CGG 0.591412 3.4:+90549404 None:intergenic
AAGAGTTGTCCAAGAAGAGG+AGG 0.596851 3.4:-90549604 MS.gene054651:CDS
TCGAAGAGTTGTCCAAGAAG+AGG 0.598509 3.4:-90549607 MS.gene054651:CDS
TGTGGAAAGATGCTTGTCAC+TGG 0.604950 3.4:-90549373 MS.gene054651:intron
GACAATGAATAGGAAAGCAA+GGG 0.612242 3.4:-90549068 MS.gene054651:CDS
TAATGCATTGTAGGTGAACA+GGG 0.612548 3.4:-90548680 MS.gene054651:intron
GAGGACAAATGCTGCAAATG+TGG 0.613322 3.4:-90548641 MS.gene054651:CDS
TGTTGTATGTGCCATGCTAG+TGG 0.619948 3.4:+90551135 None:intergenic
AATTCTGGTCAAAATGAACA+GGG 0.624976 3.4:-90551215 None:intergenic
GTGACAAGTGAGAAAGATGA+GGG 0.627471 3.4:-90548788 MS.gene054651:CDS
GGGTCGTAATAAAGCAACAA+AGG 0.644402 3.4:-90548768 MS.gene054651:intron
CGAGTGTGGCTTGAAAGGCA+TGG 0.656819 3.4:-90549403 MS.gene054651:CDS
GAAAGGCATGGGTAATGATG+TGG 0.658786 3.4:-90549391 MS.gene054651:CDS
ATGTTGGCAGTGACCGAGTG+TGG 0.669170 3.4:-90549417 MS.gene054651:intron
AATTAATGTTCAGTGTGTGG+AGG 0.687983 3.4:-90549287 MS.gene054651:intron
GGTGACAAGTGAGAAAGATG+AGG 0.693626 3.4:-90548789 MS.gene054651:CDS
TGTGTGGAGGAAAGAATGCG+TGG 0.701022 3.4:-90549274 MS.gene054651:CDS
ATTCTGGTCAAAATGAACAG+GGG 0.721555 3.4:-90551214 None:intergenic
ATATTGAGAAAACAAGACAT+CGG 0.724469 3.4:-90549126 MS.gene054651:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAGATATCATTAAAAA+CGG + chr3.4:90549676-90549695 None:intergenic 10.0%
!! AAAATTACAAATTGACATAA+AGG + chr3.4:90550624-90550643 None:intergenic 15.0%
!! TATATTATCAGATCTAAATA+GGG - chr3.4:90549290-90549309 MS.gene054651:intron 15.0%
!! TGTAACAAATATTGAAATAT+GGG + chr3.4:90550466-90550485 None:intergenic 15.0%
!! TTGTAACAAATATTGAAATA+TGG + chr3.4:90550467-90550486 None:intergenic 15.0%
!! AAAGAAAACAAAACAAGAAA+AGG + chr3.4:90549007-90549026 None:intergenic 20.0%
!! AATAATCAAGAGTCAATTTA+TGG - chr3.4:90549264-90549283 MS.gene054651:CDS 20.0%
!! ATATTATCAGATCTAAATAG+GGG - chr3.4:90549291-90549310 MS.gene054651:intron 20.0%
!! CTAACCTAATAAAATTGAAA+AGG + chr3.4:90549726-90549745 None:intergenic 20.0%
!! CTATATTATCAGATCTAAAT+AGG - chr3.4:90549289-90549308 MS.gene054651:intron 20.0%
!! TGAAAACAAAAAAGAACATT+TGG + chr3.4:90548833-90548852 None:intergenic 20.0%
!! TTCACAAAATTATAACGATA+GGG + chr3.4:90548932-90548951 None:intergenic 20.0%
!! TTTCACAAAATTATAACGAT+AGG + chr3.4:90548933-90548952 None:intergenic 20.0%
!!! AATGTTCTTTTTTGTTTTCA+TGG - chr3.4:90548833-90548852 MS.gene054651:intron 20.0%
!!! CTTGTTCATTTTTTTTTTCT+GGG - chr3.4:90549879-90549898 MS.gene054651:intron 20.0%
!!! CTTTTCTGTTTTAAAATTTC+AGG - chr3.4:90550088-90550107 MS.gene054651:intron 20.0%
!!! GGAATTTAATTTTTGTATAG+TGG - chr3.4:90550838-90550857 MS.gene054651:intron 20.0%
!!! TAATGCTATTTTTTGAGTAT+AGG - chr3.4:90550968-90550987 MS.gene054651:intron 20.0%
!!! TTTCAATATTTGTTACAAGT+AGG - chr3.4:90550469-90550488 MS.gene054651:intron 20.0%
!!! TTTTTGTGTTCTCTTTTTAT+AGG - chr3.4:90550114-90550133 MS.gene054651:intron 20.0%
!!! TTTTTGTTCTTTTGATTTAG+AGG - chr3.4:90549025-90549044 MS.gene054651:CDS 20.0%
! AACTTATCTAGATATGTACT+TGG - chr3.4:90550330-90550349 MS.gene054651:intron 25.0%
! ACCTAATAAAATTGAAAAGG+AGG + chr3.4:90549723-90549742 None:intergenic 25.0%
! ACTTATCTAGATATGTACTT+GGG - chr3.4:90550331-90550350 MS.gene054651:intron 25.0%
! ATATTGAAGAAAACCATAGT+TGG - chr3.4:90550056-90550075 MS.gene054651:intron 25.0%
! ATATTGAGAAAACAAGACAT+CGG - chr3.4:90550677-90550696 MS.gene054651:intron 25.0%
! ATCTAGATAAGTTTGAAGAA+TGG + chr3.4:90550323-90550342 None:intergenic 25.0%
! ATGACTTTCCACATATATAA+AGG + chr3.4:90551091-90551110 None:intergenic 25.0%
! CATAATTAGAATGTCAAAAC+AGG - chr3.4:90550564-90550583 MS.gene054651:intron 25.0%
! GTTACTCTCTATTAAAGAAT+AGG + chr3.4:90549503-90549522 None:intergenic 25.0%
! TATTGAAGAAAACCATAGTT+GGG - chr3.4:90550057-90550076 MS.gene054651:intron 25.0%
! TCACAAAATTATAACGATAG+GGG + chr3.4:90548931-90548950 None:intergenic 25.0%
!! CTTTAAAAAGTAGCATGAAA+TGG + chr3.4:90549551-90549570 None:intergenic 25.0%
!! TTTATTGGTTAATGCATTGT+AGG - chr3.4:90551114-90551133 MS.gene054651:CDS 25.0%
!!! ATGCTACTTTTTAAAGCATT+TGG - chr3.4:90549555-90549574 MS.gene054651:CDS 25.0%
!!! ATTTTTTGAGTATAGGTAGA+GGG - chr3.4:90550975-90550994 MS.gene054651:intron 25.0%
!!! GCTTGTTCATTTTTTTTTTC+TGG - chr3.4:90549878-90549897 MS.gene054651:intron 25.0%
!!! GTTTTAAATGATAAGCACAT+AGG + chr3.4:90550944-90550963 None:intergenic 25.0%
!!! TATTTTTTGAGTATAGGTAG+AGG - chr3.4:90550974-90550993 MS.gene054651:intron 25.0%
AAAGCCAGATTAATACTGTT+TGG + chr3.4:90548877-90548896 None:intergenic 30.0%
AAGCCAGATTAATACTGTTT+GGG + chr3.4:90548876-90548895 None:intergenic 30.0%
ACAAAATTATAACGATAGGG+GGG + chr3.4:90548929-90548948 None:intergenic 30.0%
AGCAAATCATGACAATGAAT+AGG - chr3.4:90550725-90550744 MS.gene054651:intron 30.0%
ATCCTACAGTAAGAAACAAA+AGG - chr3.4:90549950-90549969 MS.gene054651:intron 30.0%
ATGGCAAAAACAAAATCAGA+TGG + chr3.4:90550304-90550323 None:intergenic 30.0%
CACAAAATTATAACGATAGG+GGG + chr3.4:90548930-90548949 None:intergenic 30.0%
GAAAATTAATGTTCAGTGTG+TGG - chr3.4:90550513-90550532 MS.gene054651:intron 30.0%
GACAGAGTAATGACATAAAT+AGG + chr3.4:90550282-90550301 None:intergenic 30.0%
GCAATTCACCTTTATATATG+TGG - chr3.4:90551080-90551099 MS.gene054651:CDS 30.0%
TAGGATTCCATGTAATCTAA+CGG - chr3.4:90550488-90550507 MS.gene054651:intron 30.0%
TGACAAAATACAACAGCTAT+AGG + chr3.4:90550367-90550386 None:intergenic 30.0%
TGATCAGCTTAATGATGTTA+CGG - chr3.4:90549995-90550014 MS.gene054651:intron 30.0%
! AAGTAGTGCCTAAAATTTTG+GGG - chr3.4:90548795-90548814 MS.gene054651:CDS 30.0%
! AGAAGTAGTGCCTAAAATTT+TGG - chr3.4:90548793-90548812 MS.gene054651:CDS 30.0%
! GAAGTAGTGCCTAAAATTTT+GGG - chr3.4:90548794-90548813 MS.gene054651:CDS 30.0%
! GCCTCCTTTTCAATTTTATT+AGG - chr3.4:90549719-90549738 MS.gene054651:intron 30.0%
! TCAATCAATTTTCTCTGCAA+TGG + chr3.4:90550248-90550267 None:intergenic 30.0%
! TGTTTGATCCCCAAAATTTT+AGG + chr3.4:90548806-90548825 None:intergenic 30.0%
! TTGTGTTCTCTTTTTATAGG+AGG - chr3.4:90550117-90550136 MS.gene054651:intron 30.0%
!! AGGAAGAACAGTTATTTTCT+GGG - chr3.4:90550140-90550159 MS.gene054651:intron 30.0%
!! GATTAGTTTCAATCAGTTCT+TGG + chr3.4:90549226-90549245 None:intergenic 30.0%
!! GTGGAAAGTCATGTTTTTAT+TGG - chr3.4:90551099-90551118 MS.gene054651:CDS 30.0%
AAAGTATGTGTTCCCAACTA+TGG + chr3.4:90550072-90550091 None:intergenic 35.0%
AATTAATGTTCAGTGTGTGG+AGG - chr3.4:90550516-90550535 MS.gene054651:intron 35.0%
AATTCCACAAAGCGACAAAA+TGG + chr3.4:90550824-90550843 None:intergenic 35.0%
ATCTGGTTGAGATGCAAAAT+GGG + chr3.4:90548725-90548744 None:intergenic 35.0%
CAAAATACTATGACTCACCT+TGG + chr3.4:90549859-90549878 None:intergenic 35.0%
CAACAGCTATAGGTTTACAT+AGG + chr3.4:90550357-90550376 None:intergenic 35.0%
CTAGGATTTGTAGCTTCTAA+CGG - chr3.4:90549317-90549336 MS.gene054651:intron 35.0%
GACAATGAATAGGAAAGCAA+GGG - chr3.4:90550735-90550754 MS.gene054651:intron 35.0%
GGAACCTAACGCAAAATTAT+AGG + chr3.4:90549530-90549549 None:intergenic 35.0%
GGAATCAACTAACTTTCAGT+TGG + chr3.4:90549482-90549501 None:intergenic 35.0%
TAATACTCTCTCCACATGAA+GGG + chr3.4:90549352-90549371 None:intergenic 35.0%
TAATGCATTGTAGGTGAACA+GGG - chr3.4:90551123-90551142 MS.gene054651:CDS 35.0%
TCATTAAGCTGATCAATGCT+TGG + chr3.4:90549990-90550009 None:intergenic 35.0%
TGACAATGAATAGGAAAGCA+AGG - chr3.4:90550734-90550753 MS.gene054651:intron 35.0%
TTAATACTCTCTCCACATGA+AGG + chr3.4:90549353-90549372 None:intergenic 35.0%
TTAATGCATTGTAGGTGAAC+AGG - chr3.4:90551122-90551141 MS.gene054651:CDS 35.0%
TTGTAACTTACAGAGACAGT+TGG + chr3.4:90548748-90548767 None:intergenic 35.0%
TTTGTCCTTGCACATTTCTT+GGG - chr3.4:90550877-90550896 MS.gene054651:intron 35.0%
! AACCCACATCATTTAGTTTC+CGG + chr3.4:90550801-90550820 None:intergenic 35.0%
! AGAGCCTATAATTTTGCGTT+AGG - chr3.4:90549523-90549542 MS.gene054651:intron 35.0%
! GCTGTTGTATTTTGTCATGT+TGG - chr3.4:90550370-90550389 MS.gene054651:intron 35.0%
! TGTTCTCTTTTTATAGGAGG+AGG - chr3.4:90550120-90550139 MS.gene054651:intron 35.0%
! TTTTCAGCCGTTAGATTACA+TGG + chr3.4:90550498-90550517 None:intergenic 35.0%
! TTTTGTCCTTGCACATTTCT+TGG - chr3.4:90550876-90550895 MS.gene054651:intron 35.0%
!! AAGACGTCTTTTTGAGAGAT+TGG - chr3.4:90548957-90548976 MS.gene054651:intron 35.0%
!! AGACGTCTTTTTGAGAGATT+GGG - chr3.4:90548958-90548977 MS.gene054651:intron 35.0%
!! CACCTTTTGTTTCTTACTGT+AGG + chr3.4:90549955-90549974 None:intergenic 35.0%
!! CATGTGGAGAGAGTATTAAA+AGG - chr3.4:90549354-90549373 MS.gene054651:intron 35.0%
!! GAGGAAGAACAGTTATTTTC+TGG - chr3.4:90550139-90550158 MS.gene054651:intron 35.0%
!! GGAGAGAGTATTAAAAGGAT+AGG - chr3.4:90549359-90549378 MS.gene054651:intron 35.0%
!! GTAAAGGACGAATTTTCAAG+AGG - chr3.4:90548634-90548653 MS.gene054651:CDS 35.0%
!! TATCAATCAAGGCACTGTAA+AGG - chr3.4:90548618-90548637 MS.gene054651:CDS 35.0%
!! TGTTAGTGGTGTTGATCTTA+GGG - chr3.4:90550019-90550038 MS.gene054651:intron 35.0%
AAGAGTGGAGGAGAAAAAAC+AGG - chr3.4:90550758-90550777 MS.gene054651:intron 40.0%
AAGCCATTGTTCTGTTTGCA+AGG - chr3.4:90549638-90549657 MS.gene054651:CDS 40.0%
AATACTATGACTCACCTTGG+AGG + chr3.4:90549856-90549875 None:intergenic 40.0%
AATGATGTTACGGCTGTTAG+TGG - chr3.4:90550005-90550024 MS.gene054651:intron 40.0%
AGCCATTGTTCTGTTTGCAA+GGG - chr3.4:90549639-90549658 MS.gene054651:CDS 40.0%
CCACTAAAAAAACCTCCTCT+TGG - chr3.4:90549789-90549808 MS.gene054651:CDS 40.0%
CTCCGGAAACTAAATGATGT+GGG - chr3.4:90550796-90550815 MS.gene054651:intron 40.0%
CTCTAACTGCTTGTATGAGT+AGG - chr3.4:90550598-90550617 MS.gene054651:intron 40.0%
GATCTGGTTGAGATGCAAAA+TGG + chr3.4:90548726-90548745 None:intergenic 40.0%
GCAAAATGGGAAGCAGTATT+TGG + chr3.4:90548712-90548731 None:intergenic 40.0%
GCACCCAAACAGTATTAATC+TGG - chr3.4:90548870-90548889 MS.gene054651:intron 40.0%
GGGAAGTAGATGACAAAATG+AGG - chr3.4:90551143-90551162 MS.gene054651:CDS 40.0%
GGGTCGTAATAAAGCAACAA+AGG - chr3.4:90551035-90551054 MS.gene054651:intron 40.0%
GTGACAAGTGAGAAAGATGA+GGG - chr3.4:90551015-90551034 MS.gene054651:intron 40.0%
TCAGTCTCTCACAAAACAGT+TGG - chr3.4:90549453-90549472 MS.gene054651:intron 40.0%
TTCTTTAGCATCCACTAGCA+TGG - chr3.4:90548657-90548676 MS.gene054651:CDS 40.0%
! TCCGATAATTTTCCTACCAG+CGG - chr3.4:90550650-90550669 MS.gene054651:intron 40.0%
! TTTTCTCAATATCAACCCGC+TGG + chr3.4:90550669-90550688 None:intergenic 40.0%
! TTTTGCACCGCAGATTCAAA+CGG - chr3.4:90550917-90550936 MS.gene054651:intron 40.0%
!! CTGTTAGTGGTGTTGATCTT+AGG - chr3.4:90550018-90550037 MS.gene054651:intron 40.0%
!! GAAACAAAAGGTGTCATCTC+TGG - chr3.4:90549962-90549981 MS.gene054651:intron 40.0%
!!! CCAAGAGGAGGTTTTTTTAG+TGG + chr3.4:90549792-90549811 None:intergenic 40.0%
AAGAGTTGTCCAAGAAGAGG+AGG - chr3.4:90550199-90550218 MS.gene054651:intron 45.0%
AGATCTAAATAGGGGCTGCT+AGG - chr3.4:90549299-90549318 MS.gene054651:intron 45.0%
ATAGGAAAGCAAGGGAAGAG+TGG - chr3.4:90550743-90550762 MS.gene054651:intron 45.0%
CATAGGTCCGTTTGAATCTG+CGG + chr3.4:90550927-90550946 None:intergenic 45.0%
CCCGCTGGTAGGAAAATTAT+CGG + chr3.4:90550654-90550673 None:intergenic 45.0%
CTTACAGAGACAGTTGGATC+TGG + chr3.4:90548742-90548761 None:intergenic 45.0%
GAGGACAAATGCTGCAAATG+TGG - chr3.4:90551162-90551181 MS.gene054651:CDS 45.0%
GCTCCGGAAACTAAATGATG+TGG - chr3.4:90550795-90550814 MS.gene054651:intron 45.0%
GGCTGAAACAGAAAAAGCTC+CGG - chr3.4:90550779-90550798 MS.gene054651:intron 45.0%
GGTGACAAGTGAGAAAGATG+AGG - chr3.4:90551014-90551033 MS.gene054651:intron 45.0%
GTATAGGTAGAGGGTAGTTC+CGG - chr3.4:90550984-90551003 MS.gene054651:intron 45.0%
TCACTTGTCACCATCAACTC+CGG + chr3.4:90551006-90551025 None:intergenic 45.0%
TCAGACTTTCCTCCTCTTCT+TGG + chr3.4:90550211-90550230 None:intergenic 45.0%
TCGAAGAGTTGTCCAAGAAG+AGG - chr3.4:90550196-90550215 MS.gene054651:intron 45.0%
TGAAACTCGACTGTCATCCT+TGG + chr3.4:90550168-90550187 None:intergenic 45.0%
TGCCCTTGCAAACAGAACAA+TGG + chr3.4:90549644-90549663 None:intergenic 45.0%
TGTGGAAAGATGCTTGTCAC+TGG - chr3.4:90550430-90550449 MS.gene054651:intron 45.0%
TGTTGTATGTGCCATGCTAG+TGG + chr3.4:90548671-90548690 None:intergenic 45.0%
! AGAAAACCACTTGAGGCACT+TGG - chr3.4:90549817-90549836 MS.gene054651:CDS 45.0%
! AGGGGTAGTGGTATCAATCA+AGG - chr3.4:90548607-90548626 MS.gene054651:CDS 45.0%
! CCGATAATTTTCCTACCAGC+GGG - chr3.4:90550651-90550670 MS.gene054651:intron 45.0%
! GAAAGGCATGGGTAATGATG+TGG - chr3.4:90550412-90550431 MS.gene054651:intron 45.0%
! TGCCTCAAGTGGTTTTCTTC+TGG + chr3.4:90549815-90549834 None:intergenic 45.0%
!! ATGACACCAGAAGTGCTAGT+TGG + chr3.4:90549759-90549778 None:intergenic 45.0%
!! TGACACCAGAAGTGCTAGTT+GGG + chr3.4:90549758-90549777 None:intergenic 45.0%
!!! GGTTCCATTTTGTCGCTTTG+TGG - chr3.4:90550817-90550836 MS.gene054651:intron 45.0%
ACTATGACTCACCTTGGAGG+AGG + chr3.4:90549853-90549872 None:intergenic 50.0%
CAGATCCCAACTAGCACTTC+TGG - chr3.4:90549750-90549769 MS.gene054651:intron 50.0%
CATGCCTTTCAAGCCACACT+CGG + chr3.4:90550402-90550421 None:intergenic 50.0%
CTCAATATCAACCCGCTGGT+AGG + chr3.4:90550665-90550684 None:intergenic 50.0%
GAAGAACCAAGTGCCTCAAG+TGG + chr3.4:90549826-90549845 None:intergenic 50.0%
GCATGCCCAAGAAATGTGCA+AGG + chr3.4:90550885-90550904 None:intergenic 50.0%
GGCATTCTTCTCCCTTCATG+TGG - chr3.4:90549338-90549357 MS.gene054651:intron 50.0%
GGCCAGAAGAAAACCACTTG+AGG - chr3.4:90549810-90549829 MS.gene054651:CDS 50.0%
TGTGTGGAGGAAAGAATGCG+TGG - chr3.4:90550529-90550548 MS.gene054651:intron 50.0%
! GAGTGTGGCTTGAAAGGCAT+GGG - chr3.4:90550401-90550420 MS.gene054651:intron 50.0%
! GTGGTTTTCTTCTGGCCAAG+AGG + chr3.4:90549807-90549826 None:intergenic 50.0%
! GTTTTCTTCTGGCCAAGAGG+AGG + chr3.4:90549804-90549823 None:intergenic 50.0%
!! CAGTTATTTTCTGGGCGCCA+AGG - chr3.4:90550148-90550167 MS.gene054651:intron 50.0%
ATGACTCACCTTGGAGGAGG+AGG + chr3.4:90549850-90549869 None:intergenic 55.0%
ATGTTGGCAGTGACCGAGTG+TGG - chr3.4:90550386-90550405 MS.gene054651:intron 55.0%
CGAGTGTGGCTTGAAAGGCA+TGG - chr3.4:90550400-90550419 MS.gene054651:intron 55.0%
GAGGGTAGTTCCGGAGTTGA+TGG - chr3.4:90550993-90551012 MS.gene054651:intron 55.0%
GGAAAGCAAGGGAAGAGTGG+AGG - chr3.4:90550746-90550765 MS.gene054651:intron 55.0%
GTGACCGAGTGTGGCTTGAA+AGG - chr3.4:90550395-90550414 MS.gene054651:intron 55.0%
TGACTCACCTTGGAGGAGGA+GGG + chr3.4:90549849-90549868 None:intergenic 55.0%
ATCTCCCCCAACAGCAGCTC+GGG + chr3.4:90551191-90551210 None:intergenic 60.0%
CATCTCCCCCAACAGCAGCT+CGG + chr3.4:90551192-90551211 None:intergenic 60.0%
GACTCACCTTGGAGGAGGAG+GGG + chr3.4:90549848-90549867 None:intergenic 60.0%
GTTCTTCCCCTCCTCCTCCA+AGG - chr3.4:90549839-90549858 MS.gene054651:CDS 60.0%
TGGCAGCCCGAGCTGCTGTT+GGG - chr3.4:90551182-90551201 MS.gene054651:CDS 65.0%
GCAGCCCGAGCTGCTGTTGG+GGG - chr3.4:90551184-90551203 MS.gene054651:CDS 70.0%
GGCAGCCCGAGCTGCTGTTG+GGG - chr3.4:90551183-90551202 MS.gene054651:CDS 70.0%
GTGGCAGCCCGAGCTGCTGT+TGG - chr3.4:90551181-90551200 MS.gene054651:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 90548601 90551224 90548601 ID=MS.gene054651
chr3.4 mRNA 90548601 90551224 90548601 ID=MS.gene054651.t1;Parent=MS.gene054651
chr3.4 exon 90551069 90551224 90551069 ID=MS.gene054651.t1.exon1;Parent=MS.gene054651.t1
chr3.4 CDS 90551069 90551224 90551069 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
chr3.4 exon 90549785 90549862 90549785 ID=MS.gene054651.t1.exon2;Parent=MS.gene054651.t1
chr3.4 CDS 90549785 90549862 90549785 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
chr3.4 exon 90549553 90549679 90549553 ID=MS.gene054651.t1.exon3;Parent=MS.gene054651.t1
chr3.4 CDS 90549553 90549679 90549553 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
chr3.4 exon 90549374 90549429 90549374 ID=MS.gene054651.t1.exon4;Parent=MS.gene054651.t1
chr3.4 CDS 90549374 90549429 90549374 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
chr3.4 exon 90549240 90549296 90549240 ID=MS.gene054651.t1.exon5;Parent=MS.gene054651.t1
chr3.4 CDS 90549240 90549296 90549240 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
chr3.4 exon 90549012 90549155 90549012 ID=MS.gene054651.t1.exon6;Parent=MS.gene054651.t1
chr3.4 CDS 90549012 90549155 90549012 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
chr3.4 exon 90548769 90548816 90548769 ID=MS.gene054651.t1.exon7;Parent=MS.gene054651.t1
chr3.4 CDS 90548769 90548816 90548769 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
chr3.4 exon 90548601 90548689 90548601 ID=MS.gene054651.t1.exon8;Parent=MS.gene054651.t1
chr3.4 CDS 90548601 90548689 90548601 ID=cds.MS.gene054651.t1;Parent=MS.gene054651.t1
Gene Sequence

>MS.gene054651

ATGAACAGGGGTAGTGGTATCAATCAAGGCACTGTAAAGGACGAATTTTCAAGAGGTTCTTTAGCATCCACTAGCATGGCACATACAACATCTGCTAGCTTGCTTGCGCCAAATACTGCTTCCCATTTTGCATCTCAACCAGATCCAACTGTCTCTGTAAGTTACAAACTAATTTGCAAGTCTTTTGTCTAGAGAAGTAGTGCCTAAAATTTTGGGGATCAAACAGTATCCAAATGTTCTTTTTTGTTTTCATGGTCATGAGCATTCATGCACCCAAACAGTATTAATCTGGCTTTGAACTGCTTGAATTGTTTAAAGAAAATGTCCCCCCTATCGTTATAATTTTGTGAAATATTAAGACGTCTTTTTGAGAGATTGGGAAGCTTTGCTATATTCACGTTCTCCTTTTCTTGTTTTGTTTTCTTTTTTGTTCTTTTGATTTAGAGGATTTCTTGTTCTTATTTTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATTCTTCAGTATCAATATTTTTTTTCTTCTTATATATAGTTTGAAAGAAAACAAGTAACCAAGAACTGATTGAAACTAATCTGAAATTTTTATATTGTCAATAATCAAGAGTCAATTTATGGTACTATATTATCAGATCTAAATAGGGGCTGCTAGGATTTGTAGCTTCTAACGGCATTCTTCTCCCTTCATGTGGAGAGAGTATTAAAAGGATAGGACTCAACTAATTTCAGTAAGTTGCTAACTGTTTTGTAACTGTCAAAACTGTATGAACACTGTTTATAACTGTCAGTCTCTCACAAAACAGTTGGCAACCAACTGAAAGTTAGTTGATTCCTATTCTTTAATAGAGAGTAACAGAGCCTATAATTTTGCGTTAGGTTCCATTTCATGCTACTTTTTAAAGCATTTGGCTGTTACATAATATGAATTCATTCTTTTTTTTTTTTTTGTGTAAATTTTTCTTGAAAAACAAGCCATTGTTCTGTTTGCAAGGGCATGTTCATCGCCGTTTTTAATGATATCTTAATACTTTGCTGATACTCTATTTCTTTGCCTCCTTTTCAATTTTATTAGGTTAGTTCTCAGATCCCAACTAGCACTTCTGGTGTCATGTCAAAGACACCACTAAAAAAACCTCCTCTTGGCCAGAAGAAAACCACTTGAGGCACTTGGTTCTTCCCCTCCTCCTCCAAGGTGAGTCATAGTATTTTGCTTGTTCATTTTTTTTTTCTGGGTTAGTTATTGCTGTCAATTACTGATTTTGATATGCATATCTGCTTGCTATCCTACAGTAAGAAACAAAAGGTGTCATCTCTGGAACCAAGCATTGATCAGCTTAATGATGTTACGGCTGTTAGTGGTGTTGATCTTAGGGTATGATACTTTGTCATATTGAAGAAAACCATAGTTGGGAACACATACTTTTCTGTTTTAAAATTTCAGGCTATTTTTGTGTTCTCTTTTTATAGGAGGAGGAAGAACAGTTATTTTCTGGGCGCCAAGGATGACAGTCGAGTTTCAGAAGCATCTCGAAGAGTTGTCCAAGAAGAGGAGGAAAGTCTGATTTTGCTGAAAGCTCCATTGCAGAGAAAATTGATTGAGATTAGTTAGTCCTATTTATGTCATTACTCTGTCCATCTGATTTTGTTTTTGCCATTCTTCAAACTTATCTAGATATGTACTTGGGCCTATGTAAACCTATAGCTGTTGTATTTTGTCATGTTGGCAGTGACCGAGTGTGGCTTGAAAGGCATGGGTAATGATGTGGAAAGATGCTTGTCACTGGTGAGATTAAACCCATATTTCAATATTTGTTACAAGTAGGATTCCATGTAATCTAACGGCTGAAAATTAATGTTCAGTGTGTGGAGGAAAGAATGCGTGGAGTAATAAGTAACATAATTAGAATGTCAAAACAGGTCAGTTATTTTCTCTAACTGCTTGTATGAGTAGGCCTTTATGTCAATTTGTAATTTTCTTAATTCCGATAATTTTCCTACCAGCGGGTTGATATTGAGAAAACAAGACATCGGACTGTTGTCACTTCAGATGTTCGACAGCAAATCATGACAATGAATAGGAAAGCAAGGGAAGAGTGGAGGAGAAAAAACAGGCTGAAACAGAAAAAGCTCCGGAAACTAAATGATGTGGGTTCCATTTTGTCGCTTTGTGGAATTTAATTTTTGTATAGTGGATTACATAATACAGTTTTTGTCCTTGCACATTTCTTGGGCATGCATATATTTTATATTTTGCACCGCAGATTCAAACGGACCTATGTGCTTATCATTTAAAACATTGTAATGCTATTTTTTGAGTATAGGTAGAGGGTAGTTCCGGAGTTGATGGTGACAAGTGAGAAAGATGAGGGTCGTAATAAAGCAACAAAGGTACTGCTGTCAATTTAGATGATGCAATTCACCTTTATATATGTGGAAAGTCATGTTTTTATTGGTTAATGCATTGTAGGTGAACAGGGAAGTAGATGACAAAATGAGGACAAATGCTGCAAATGTGGCAGCCCGAGCTGCTGTTGGGGGAGATGACATGCTGTCAAA

Protein sequence

>MS.gene054651.t1

MNRGSGINQGTVKDEFSRGSLASTSMAHTTSASLLAPNTASHFASQPDPTVSKQKVSSLEPSIDQLNDVTAVSGVDLRNSYFLGAKDDSRVSEASRRVVQEEEESLILLKAPLQRKLIEIMTECGLKGMGNDVERCLSLCVEERMRGVISNIIRMSKQRVDIEKTRHRTVVTSDVRQQIMTMNRKAREEWRRKNRLKQKKLRKLNDLMVTSEKDEGRNKATKVNREVDDKMRTNAANVAARAAVGGDDMLS