Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25196.t1 | XP_013466567.1 | 92.7 | 506 | 37 | 0 | 1 | 506 | 1 | 506 | 7.30E-229 | 803.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25196.t1 | Q8S9K3 | 30.5 | 223 | 136 | 5 | 65 | 283 | 93 | 300 | 2.1e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25196.t1 | A0A072VGP2 | 92.7 | 506 | 37 | 0 | 1 | 506 | 1 | 506 | 5.2e-229 | 803.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06001 | MS.gene25196 | 0.808131 | 3.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25196.t1 | MTR_1g032260 | 93.083 | 506 | 35 | 0 | 1 | 506 | 1 | 506 | 0.0 | 964 |
| MS.gene25196.t1 | MTR_6g069400 | 37.752 | 347 | 185 | 9 | 39 | 365 | 43 | 378 | 1.06e-75 | 246 |
| MS.gene25196.t1 | MTR_7g113360 | 40.532 | 301 | 127 | 9 | 59 | 327 | 123 | 403 | 5.59e-63 | 221 |
| MS.gene25196.t1 | MTR_7g087047 | 25.723 | 311 | 166 | 8 | 54 | 364 | 70 | 315 | 4.14e-30 | 125 |
| MS.gene25196.t1 | MTR_7g087047 | 50.000 | 66 | 33 | 0 | 299 | 364 | 75 | 140 | 2.08e-19 | 92.4 |
| MS.gene25196.t1 | MTR_7g087047 | 31.034 | 145 | 89 | 2 | 182 | 326 | 2 | 135 | 4.16e-18 | 88.2 |
| MS.gene25196.t1 | MTR_2g075450 | 28.671 | 143 | 92 | 2 | 101 | 240 | 144 | 279 | 6.22e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25196.t1 | AT1G70650 | 46.476 | 454 | 190 | 7 | 61 | 499 | 43 | 458 | 1.16e-130 | 388 |
| MS.gene25196.t1 | AT1G70650 | 59.873 | 314 | 118 | 3 | 61 | 373 | 43 | 349 | 3.86e-128 | 385 |
| MS.gene25196.t1 | AT1G48570 | 33.161 | 386 | 175 | 6 | 62 | 368 | 60 | 441 | 4.29e-65 | 218 |
| MS.gene25196.t1 | AT1G55040 | 37.931 | 348 | 155 | 7 | 53 | 378 | 138 | 446 | 1.56e-64 | 224 |
| MS.gene25196.t1 | AT5G17790 | 28.972 | 321 | 163 | 9 | 65 | 379 | 93 | 354 | 2.99e-34 | 137 |
| MS.gene25196.t1 | AT1G53460 | 29.293 | 198 | 126 | 6 | 43 | 231 | 120 | 312 | 1.06e-12 | 69.3 |
Find 94 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACTGCTTGTCTTAATTT+TGG | 0.197075 | 1.3:-17200984 | MS.gene25196:CDS |
| GTCTTCTATGATCACATTTC+AGG | 0.201359 | 1.3:+17198521 | None:intergenic |
| AATGGAATGTTTGATCAAAA+AGG | 0.218735 | 1.3:-17201075 | MS.gene25196:CDS |
| GCCTGAATGGGTAGACTTAA+TGG | 0.240391 | 1.3:-17201093 | MS.gene25196:CDS |
| TTGTTGTTGATTCCTCCTTT+TGG | 0.258450 | 1.3:+17201151 | None:intergenic |
| TCCATTAAGTCTACCCATTC+AGG | 0.266961 | 1.3:+17201092 | None:intergenic |
| GACATCGTTTCAAAATGTTT+TGG | 0.288244 | 1.3:+17201279 | None:intergenic |
| CCCATTTGAGAATCCTCATT+TGG | 0.295299 | 1.3:-17201030 | MS.gene25196:CDS |
| CAAACCATCTCTAAATAAAA+TGG | 0.297671 | 1.3:-17199239 | MS.gene25196:CDS |
| ATAAGAGTTATTGTAACATT+TGG | 0.303310 | 1.3:-17199593 | MS.gene25196:CDS |
| ACTTTGCCAAGCATGCCTTT+TGG | 0.337086 | 1.3:+17198183 | None:intergenic |
| TTATATACTTCTGCCCTTTG+TGG | 0.339392 | 1.3:+17198226 | None:intergenic |
| CTCTTTCTTTCTGACGTCCT+TGG | 0.340613 | 1.3:+17198382 | None:intergenic |
| ACAAGCAGTTCTAATAAGAT+TGG | 0.356703 | 1.3:+17200995 | None:intergenic |
| TGGGTTCATCAAACTCGTTT+TGG | 0.373402 | 1.3:+17201171 | None:intergenic |
| AGAGAACTCAAATGATAATT+CGG | 0.394481 | 1.3:-17198296 | MS.gene25196:CDS |
| CCCAAATGAGGATTCTCAAA+TGG | 0.401051 | 1.3:+17201029 | None:intergenic |
| TTTGCAGGATATCGGTTTGA+TGG | 0.405041 | 1.3:-17198418 | MS.gene25196:CDS |
| TTTCTCATCCATGGCCTGAA+TGG | 0.413730 | 1.3:-17201106 | MS.gene25196:CDS |
| GGATTAATGCGACGGTTTGA+AGG | 0.414616 | 1.3:+17198679 | None:intergenic |
| CCATTTGAGAATCCTCATTT+GGG | 0.417315 | 1.3:-17201029 | MS.gene25196:CDS |
| TTATCCACTGAACCGATGAT+TGG | 0.424796 | 1.3:+17199262 | None:intergenic |
| GATGAGATGGCCGAATGGTT+TGG | 0.424798 | 1.3:-17198112 | MS.gene25196:CDS |
| CTAGTCTTACCTCCAGCAAT+AGG | 0.425161 | 1.3:+17198259 | None:intergenic |
| ACAGCAACCTCTGTGATGTC+TGG | 0.445160 | 1.3:+17199145 | None:intergenic |
| TTGGAAAGGGTAAGAATTCA+AGG | 0.445851 | 1.3:-17198093 | MS.gene25196:CDS |
| ATCAGTCCAAAAGGCATGCT+TGG | 0.456188 | 1.3:-17198189 | MS.gene25196:CDS |
| TTTGAAGCATTTGACACCTT+AGG | 0.458210 | 1.3:+17198499 | None:intergenic |
| CCAAATGAGGATTCTCAAAT+GGG | 0.462125 | 1.3:+17201030 | None:intergenic |
| CATCTGAATCCTCTAGATAA+GGG | 0.463100 | 1.3:-17199112 | MS.gene25196:CDS |
| TAGTCACTTACCTTTGAAGA+AGG | 0.465479 | 1.3:-17198858 | MS.gene25196:CDS |
| TTGTATTCTTTGCAAAATTG+AGG | 0.466161 | 1.3:+17198725 | None:intergenic |
| GACTCGCATTCCCACTCCCC+TGG | 0.466634 | 1.3:+17198658 | None:intergenic |
| TCAAACCGTCGCATTAATCC+AGG | 0.470383 | 1.3:-17198676 | MS.gene25196:CDS |
| GTGTAGCTCGTGTAATTTGA+GGG | 0.472320 | 1.3:-17199377 | MS.gene25196:CDS |
| TCATCTGAATCCTCTAGATA+AGG | 0.474013 | 1.3:-17199113 | MS.gene25196:CDS |
| TTCTCATCCATGGCCTGAAT+GGG | 0.481289 | 1.3:-17201105 | MS.gene25196:CDS |
| CTTACCCTTTCCAAACCATT+CGG | 0.484967 | 1.3:+17198102 | None:intergenic |
| TATCCACTGAACCGATGATT+GGG | 0.490233 | 1.3:+17199263 | None:intergenic |
| TACCTTTGAAGAAGGGAGAC+TGG | 0.492224 | 1.3:-17198850 | MS.gene25196:CDS |
| TGATATTTCTAGCAAAGTTG+TGG | 0.505369 | 1.3:+17198939 | None:intergenic |
| TCTGTGATGTCTGGAAAAGT+AGG | 0.505791 | 1.3:+17199154 | None:intergenic |
| CTGTGATGTCTGGAAAAGTA+GGG | 0.507201 | 1.3:+17199155 | None:intergenic |
| TTCAGTTAAAGCAAGGCGAT+TGG | 0.509614 | 1.3:-17199078 | MS.gene25196:CDS |
| AAGATGTTTGCAATGTAAAG+AGG | 0.517495 | 1.3:-17198704 | MS.gene25196:CDS |
| AACCGATATCCTGCAAAAGC+AGG | 0.518241 | 1.3:+17198424 | None:intergenic |
| TGTGTAGCTCGTGTAATTTG+AGG | 0.526404 | 1.3:-17199378 | MS.gene25196:CDS |
| AAGTCGAGATTTGTAGAAGA+AGG | 0.530158 | 1.3:-17198340 | MS.gene25196:CDS |
| AGATGTTTGCAATGTAAAGA+GGG | 0.532782 | 1.3:-17198703 | MS.gene25196:CDS |
| AGTCGCCAAATCAGTCCAAA+AGG | 0.534449 | 1.3:-17198198 | MS.gene25196:CDS |
| ATCTCATCATCATCGGTACT+CGG | 0.534616 | 1.3:+17198127 | None:intergenic |
| GTGAAAGCACGCGAAGATGA+AGG | 0.540296 | 1.3:-17199334 | MS.gene25196:CDS |
| GGATGAGAAATCTGAAAAGC+GGG | 0.543444 | 1.3:+17201119 | None:intergenic |
| CATCAATTTCAGAAGAAACA+TGG | 0.543784 | 1.3:-17198548 | MS.gene25196:CDS |
| AAGTCTACCCATTCAGGCCA+TGG | 0.546110 | 1.3:+17201098 | None:intergenic |
| AGTCACTTACCTTTGAAGAA+GGG | 0.549272 | 1.3:-17198857 | MS.gene25196:CDS |
| GTCGCATTAATCCAGGGGAG+TGG | 0.553077 | 1.3:-17198669 | MS.gene25196:CDS |
| ACGAGTTTGATGAACCCAAA+AGG | 0.559599 | 1.3:-17201166 | MS.gene25196:CDS |
| GATAGAAAAGTGGTCAACTC+AGG | 0.561924 | 1.3:-17199557 | MS.gene25196:CDS |
| ACTCCCCTGGATTAATGCGA+CGG | 0.562909 | 1.3:+17198671 | None:intergenic |
| GGACGTCAGAAAGAAAGAGC+AGG | 0.564051 | 1.3:-17198378 | MS.gene25196:CDS |
| ATGTGATCATAGAAGACCTA+AGG | 0.565819 | 1.3:-17198515 | MS.gene25196:CDS |
| TAGCATGTCTGAGCCACAAA+GGG | 0.568510 | 1.3:-17198239 | MS.gene25196:CDS |
| ATCCAGTCTCCCTTCTTCAA+AGG | 0.570994 | 1.3:+17198848 | None:intergenic |
| TTTACCTTAAAATATGAGCA+TGG | 0.571764 | 1.3:+17200955 | None:intergenic |
| TCGCATTAATCCAGGGGAGT+GGG | 0.573860 | 1.3:-17198668 | MS.gene25196:CDS |
| AGCATATGCAGGCATTGATG+AGG | 0.574530 | 1.3:-17199522 | MS.gene25196:CDS |
| TATGGACTTGACCCAATCAT+CGG | 0.575562 | 1.3:-17199274 | MS.gene25196:CDS |
| TCCAAGCTTAGATAGAAAAG+TGG | 0.585923 | 1.3:-17199567 | MS.gene25196:CDS |
| AAGCGTCTGAGAGCATATGC+AGG | 0.588329 | 1.3:-17199533 | MS.gene25196:CDS |
| AAAGATGTTCAGTTAAAGCA+AGG | 0.588511 | 1.3:-17199085 | MS.gene25196:CDS |
| TGACCCAATCATCGGTTCAG+TGG | 0.589471 | 1.3:-17199266 | MS.gene25196:CDS |
| TTCGGCCATCTCATCATCAT+CGG | 0.594552 | 1.3:+17198120 | None:intergenic |
| GATGGCCGAATGGTTTGGAA+AGG | 0.598136 | 1.3:-17198107 | MS.gene25196:CDS |
| ATGGCCGAATGGTTTGGAAA+GGG | 0.602894 | 1.3:-17198106 | MS.gene25196:CDS |
| AGAAGAGCAAAACTCATCAT+CGG | 0.606713 | 1.3:+17198156 | None:intergenic |
| GAGTACCGATGATGATGAGA+TGG | 0.609459 | 1.3:-17198125 | MS.gene25196:CDS |
| GCATATGCAGGCATTGATGA+GGG | 0.610102 | 1.3:-17199521 | MS.gene25196:CDS |
| CTAGCATGTCTGAGCCACAA+AGG | 0.611817 | 1.3:-17198240 | MS.gene25196:CDS |
| GTAGCTCGTGTAATTTGAGG+GGG | 0.617394 | 1.3:-17199375 | MS.gene25196:CDS |
| CAAACCGTCGCATTAATCCA+GGG | 0.628686 | 1.3:-17198675 | MS.gene25196:CDS |
| TGGATGAGAAATCTGAAAAG+CGG | 0.630241 | 1.3:+17201118 | None:intergenic |
| TGTAGCTCGTGTAATTTGAG+GGG | 0.631403 | 1.3:-17199376 | MS.gene25196:CDS |
| CACAGAAGTTGTCACAGTGG+AGG | 0.658565 | 1.3:+17198912 | None:intergenic |
| AGTTTGATGAACCCAAAAGG+AGG | 0.661079 | 1.3:-17201163 | MS.gene25196:CDS |
| AAACCGTCGCATTAATCCAG+GGG | 0.661201 | 1.3:-17198674 | MS.gene25196:CDS |
| AAAGCACGCGAAGATGAAGG+TGG | 0.663438 | 1.3:-17199331 | MS.gene25196:CDS |
| TGTGATGTCTGGAAAAGTAG+GGG | 0.672970 | 1.3:+17199156 | None:intergenic |
| ATGATGATGAGATGGCCGAA+TGG | 0.677784 | 1.3:-17198117 | MS.gene25196:CDS |
| CCTCACAGAAGTTGTCACAG+TGG | 0.690453 | 1.3:+17198909 | None:intergenic |
| GATGTTTGCAATGTAAAGAG+GGG | 0.691261 | 1.3:-17198702 | MS.gene25196:CDS |
| TAGCTCGTGTAATTTGAGGG+GGG | 0.711244 | 1.3:-17199374 | MS.gene25196:CDS |
| ATGGTAACAAAGAATCACCA+AGG | 0.714877 | 1.3:-17198399 | MS.gene25196:CDS |
| CCACTGTGACAACTTCTGTG+AGG | 0.726288 | 1.3:-17198909 | MS.gene25196:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTTAATGTCAATT+TGG | - | chr1.3:17199636-17199655 | MS.gene25196:intron | 15.0% |
| !!! | TTTTGTTATTTTGTTTTACT+CGG | - | chr1.3:17200768-17200787 | MS.gene25196:intron | 15.0% |
| !! | ATAAGAGTTATTGTAACATT+TGG | - | chr1.3:17199781-17199800 | MS.gene25196:intron | 20.0% |
| !! | GTAAATTACAAGAAAAAAGA+AGG | - | chr1.3:17199535-17199554 | MS.gene25196:CDS | 20.0% |
| !! | TACAATGAATGATTACTATA+TGG | + | chr1.3:17200347-17200366 | None:intergenic | 20.0% |
| !!! | ATGCGTATTATTTTTACTTA+TGG | - | chr1.3:17200082-17200101 | MS.gene25196:intron | 20.0% |
| !!! | CATTCAAATTTGTTTTTGTT+GGG | + | chr1.3:17198137-17198156 | None:intergenic | 20.0% |
| !!! | GAGTTCTTTTTATATGATTT+GGG | - | chr1.3:17198449-17198468 | MS.gene25196:CDS | 20.0% |
| !!! | TGAGTTCTTTTTATATGATT+TGG | - | chr1.3:17198448-17198467 | MS.gene25196:CDS | 20.0% |
| !!! | TTCTAAAATAACCAAAAATG+TGG | - | chr1.3:17199046-17199065 | MS.gene25196:intron | 20.0% |
| !!! | TTTACCATTTTATTTAGAGA+TGG | + | chr1.3:17200142-17200161 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTTTCTGAAA+TGG | - | chr1.3:17198472-17198491 | MS.gene25196:CDS | 20.0% |
| ! | AAAAATAAAGCAATTGAAGG+AGG | - | chr1.3:17200489-17200508 | MS.gene25196:intron | 25.0% |
| ! | AAAATGTGGAGGAAAAAAAA+AGG | - | chr1.3:17199060-17199079 | MS.gene25196:intron | 25.0% |
| ! | AAATGTGGAGGAAAAAAAAA+GGG | - | chr1.3:17199061-17199080 | MS.gene25196:intron | 25.0% |
| ! | AACTATTATACCATGATCAA+TGG | + | chr1.3:17199467-17199486 | None:intergenic | 25.0% |
| ! | AAGTAAATGACTGTAGAAAA+TGG | + | chr1.3:17199894-17199913 | None:intergenic | 25.0% |
| ! | AATGGAATGTTTGATCAAAA+AGG | - | chr1.3:17198299-17198318 | MS.gene25196:CDS | 25.0% |
| ! | AGAGAACTCAAATGATAATT+CGG | - | chr1.3:17201078-17201097 | MS.gene25196:CDS | 25.0% |
| ! | AGTTAATGTCAATTTGGAAA+TGG | - | chr1.3:17199642-17199661 | MS.gene25196:intron | 25.0% |
| ! | ATGGAAATAAAGTCATACTT+GGG | + | chr1.3:17200328-17200347 | None:intergenic | 25.0% |
| ! | ATGGAATGTTTGATCAAAAA+GGG | - | chr1.3:17198300-17198319 | MS.gene25196:CDS | 25.0% |
| ! | CAAACCATCTCTAAATAAAA+TGG | - | chr1.3:17200135-17200154 | MS.gene25196:intron | 25.0% |
| ! | CCAACAAAAACAAATTTGAA+TGG | - | chr1.3:17198135-17198154 | MS.gene25196:CDS | 25.0% |
| ! | GGAAAAAATAAAGCAATTGA+AGG | - | chr1.3:17200486-17200505 | MS.gene25196:intron | 25.0% |
| ! | TAAAATAACCAAAAATGTGG+AGG | - | chr1.3:17199049-17199068 | MS.gene25196:intron | 25.0% |
| ! | TAACAATTAGCAAGTTCAAA+TGG | + | chr1.3:17198983-17199002 | None:intergenic | 25.0% |
| ! | TAATGACAATTTCTTGCTTA+TGG | - | chr1.3:17199608-17199627 | MS.gene25196:CDS | 25.0% |
| ! | TATGGAAATAAAGTCATACT+TGG | + | chr1.3:17200329-17200348 | None:intergenic | 25.0% |
| ! | TTGTATTCTTTGCAAAATTG+AGG | + | chr1.3:17200652-17200671 | None:intergenic | 25.0% |
| ! | TTTACCTTAAAATATGAGCA+TGG | + | chr1.3:17198422-17198441 | None:intergenic | 25.0% |
| !! | AATGTCTATAGTATTGAACA+TGG | + | chr1.3:17199317-17199336 | None:intergenic | 25.0% |
| !! | TATTTAGATTTTCCTATTGC+TGG | - | chr1.3:17201103-17201122 | MS.gene25196:CDS | 25.0% |
| !!! | CCATTCAAATTTGTTTTTGT+TGG | + | chr1.3:17198138-17198157 | None:intergenic | 25.0% |
| !!! | TTTGAACTTGCTAATTGTTA+AGG | - | chr1.3:17198983-17199002 | MS.gene25196:intron | 25.0% |
| !!! | TTTTGTTTTTCTGAAATGGT+TGG | - | chr1.3:17198476-17198495 | MS.gene25196:CDS | 25.0% |
| !!! | TTTTTTTTCCTCCACATTTT+TGG | + | chr1.3:17199060-17199079 | None:intergenic | 25.0% |
| AAACTATACTAGACAGCTTA+TGG | + | chr1.3:17198701-17198720 | None:intergenic | 30.0% | |
| AAAGATGTTCAGTTAAAGCA+AGG | - | chr1.3:17200289-17200308 | MS.gene25196:intron | 30.0% | |
| AAGACTACTGAAAAAGATAG+TGG | - | chr1.3:17200174-17200193 | MS.gene25196:intron | 30.0% | |
| AAGATGTTTGCAATGTAAAG+AGG | - | chr1.3:17200670-17200689 | MS.gene25196:intron | 30.0% | |
| AATCTACACTAGACTAGATA+TGG | + | chr1.3:17199577-17199596 | None:intergenic | 30.0% | |
| ACAAACATGTGTGAATTGAT+TGG | - | chr1.3:17199214-17199233 | MS.gene25196:CDS | 30.0% | |
| ACGAAACTATTTATCCAAAC+AGG | - | chr1.3:17198821-17198840 | MS.gene25196:intron | 30.0% | |
| AGATGTTACTCACAATCATA+AGG | - | chr1.3:17199510-17199529 | MS.gene25196:intron | 30.0% | |
| AGATGTTTGCAATGTAAAGA+GGG | - | chr1.3:17200671-17200690 | MS.gene25196:intron | 30.0% | |
| AGCTTACATAAGCACTTATA+TGG | - | chr1.3:17198785-17198804 | MS.gene25196:intron | 30.0% | |
| CATCAATTTCAGAAGAAACA+TGG | - | chr1.3:17200826-17200845 | MS.gene25196:intron | 30.0% | |
| CGAAACTATTTATCCAAACA+GGG | - | chr1.3:17198822-17198841 | MS.gene25196:intron | 30.0% | |
| CTGTTATATACTCTTATGAC+TGG | + | chr1.3:17199418-17199437 | None:intergenic | 30.0% | |
| GTCTAGTGTAGATTCATTTA+AGG | - | chr1.3:17199583-17199602 | MS.gene25196:CDS | 30.0% | |
| TGGAAATAAAGTCATACTTG+GGG | + | chr1.3:17200327-17200346 | None:intergenic | 30.0% | |
| TTACAAGAAAAAAGAAGGCT+TGG | - | chr1.3:17199540-17199559 | MS.gene25196:CDS | 30.0% | |
| TTGAAACATCAGTGAATTGA+AGG | + | chr1.3:17199971-17199990 | None:intergenic | 30.0% | |
| ! | ACAAGCAGTTCTAATAAGAT+TGG | + | chr1.3:17198382-17198401 | None:intergenic | 30.0% |
| ! | AGAACTGCTTGTCTTAATTT+TGG | - | chr1.3:17198390-17198409 | MS.gene25196:CDS | 30.0% |
| ! | GACATCGTTTCAAAATGTTT+TGG | + | chr1.3:17198098-17198117 | None:intergenic | 30.0% |
| !! | AACTAACTTATTTCTGAACG+CGG | - | chr1.3:17199014-17199033 | MS.gene25196:intron | 30.0% |
| !! | TGATATTTCTAGCAAAGTTG+TGG | + | chr1.3:17200438-17200457 | None:intergenic | 30.0% |
| !!! | GGAATAAACTTTTTAAGACG+CGG | + | chr1.3:17199397-17199416 | None:intergenic | 30.0% |
| !!! | TGGTTTTGAATGTTGTGTTT+GGG | - | chr1.3:17198496-17198515 | MS.gene25196:CDS | 30.0% |
| !!! | TTGGTTTTGAATGTTGTGTT+TGG | - | chr1.3:17198495-17198514 | MS.gene25196:CDS | 30.0% |
| AAGTCGAGATTTGTAGAAGA+AGG | - | chr1.3:17201034-17201053 | MS.gene25196:CDS | 35.0% | |
| AATGTTGTGTTTGGGTATGT+AGG | - | chr1.3:17198504-17198523 | MS.gene25196:CDS | 35.0% | |
| AATTCACTGATGTTTCAACC+AGG | - | chr1.3:17199973-17199992 | MS.gene25196:intron | 35.0% | |
| ACATCAGTGAATTGAAGGTA+AGG | + | chr1.3:17199966-17199985 | None:intergenic | 35.0% | |
| AGAAGAGCAAAACTCATCAT+CGG | + | chr1.3:17201221-17201240 | None:intergenic | 35.0% | |
| ATGATCAATGGCAGATAGAA+AGG | + | chr1.3:17199455-17199474 | None:intergenic | 35.0% | |
| ATGGTAACAAAGAATCACCA+AGG | - | chr1.3:17200975-17200994 | MS.gene25196:CDS | 35.0% | |
| ATGTGATCATAGAAGACCTA+AGG | - | chr1.3:17200859-17200878 | MS.gene25196:intron | 35.0% | |
| CATCTGAATCCTCTAGATAA+GGG | - | chr1.3:17200262-17200281 | MS.gene25196:intron | 35.0% | |
| CCAAATGAGGATTCTCAAAT+GGG | + | chr1.3:17198347-17198366 | None:intergenic | 35.0% | |
| CCATTTGAGAATCCTCATTT+GGG | - | chr1.3:17198345-17198364 | MS.gene25196:CDS | 35.0% | |
| GATGTTTGCAATGTAAAGAG+GGG | - | chr1.3:17200672-17200691 | MS.gene25196:intron | 35.0% | |
| GTCTTCTATGATCACATTTC+AGG | + | chr1.3:17200856-17200875 | None:intergenic | 35.0% | |
| TCATCTGAATCCTCTAGATA+AGG | - | chr1.3:17200261-17200280 | MS.gene25196:intron | 35.0% | |
| TCCAAGCTTAGATAGAAAAG+TGG | - | chr1.3:17199807-17199826 | MS.gene25196:intron | 35.0% | |
| TCTAAACTTAAAGCCCTGTT+TGG | + | chr1.3:17198838-17198857 | None:intergenic | 35.0% | |
| TGGATGAGAAATCTGAAAAG+CGG | + | chr1.3:17198259-17198278 | None:intergenic | 35.0% | |
| TTATATACTTCTGCCCTTTG+TGG | + | chr1.3:17201151-17201170 | None:intergenic | 35.0% | |
| TTGAACCCACAGATCTATAA+GGG | + | chr1.3:17198940-17198959 | None:intergenic | 35.0% | |
| TTGGAAAGGGTAAGAATTCA+AGG | - | chr1.3:17201281-17201300 | MS.gene25196:CDS | 35.0% | |
| TTTCTATCTGCCATTGATCA+TGG | - | chr1.3:17199454-17199473 | MS.gene25196:intron | 35.0% | |
| TTTGAACCCACAGATCTATA+AGG | + | chr1.3:17198941-17198960 | None:intergenic | 35.0% | |
| ! | ACTTGCTAATTGTTAAGGCT+GGG | - | chr1.3:17198988-17199007 | MS.gene25196:intron | 35.0% |
| ! | AGTCACTTACCTTTGAAGAA+GGG | - | chr1.3:17200517-17200536 | MS.gene25196:intron | 35.0% |
| ! | CTTTTCAGATTTCTCATCCA+TGG | - | chr1.3:17198259-17198278 | MS.gene25196:CDS | 35.0% |
| ! | GAGACCATGCTCATATTTTA+AGG | - | chr1.3:17198415-17198434 | MS.gene25196:CDS | 35.0% |
| ! | GATTCTTTTGTACCCAAATG+AGG | + | chr1.3:17198360-17198379 | None:intergenic | 35.0% |
| ! | TAGTCACTTACCTTTGAAGA+AGG | - | chr1.3:17200516-17200535 | MS.gene25196:intron | 35.0% |
| ! | TGTGTGAATTGATTGGTGAT+AGG | - | chr1.3:17199221-17199240 | MS.gene25196:CDS | 35.0% |
| ! | TTAGATTTTCCTATTGCTGG+AGG | - | chr1.3:17201106-17201125 | MS.gene25196:CDS | 35.0% |
| ! | TTTGAAGCATTTGACACCTT+AGG | + | chr1.3:17200878-17200897 | None:intergenic | 35.0% |
| !! | AACTTGCTAATTGTTAAGGC+TGG | - | chr1.3:17198987-17199006 | MS.gene25196:intron | 35.0% |
| !! | ACCACTTTTCTATCTAAGCT+TGG | + | chr1.3:17199811-17199830 | None:intergenic | 35.0% |
| !! | ACTAACTTATTTCTGAACGC+GGG | - | chr1.3:17199015-17199034 | MS.gene25196:intron | 35.0% |
| !! | ATCTTTTCGAGACAAAAACC+TGG | + | chr1.3:17199761-17199780 | None:intergenic | 35.0% |
| !! | GTGTGACATTGATAGTGTAA+TGG | - | chr1.3:17198549-17198568 | MS.gene25196:CDS | 35.0% |
| !! | TGTTTTACTCGGTACTGAAA+CGG | - | chr1.3:17200779-17200798 | MS.gene25196:intron | 35.0% |
| !!! | AAACTCGTTTTGGTTTGGAT+TGG | + | chr1.3:17198196-17198215 | None:intergenic | 35.0% |
| !!! | TCATCAAACTCGTTTTGGTT+TGG | + | chr1.3:17198201-17198220 | None:intergenic | 35.0% |
| !!! | TCTTTTTTGCCCTTATCTAG+AGG | + | chr1.3:17200274-17200293 | None:intergenic | 35.0% |
| !!! | TGTTGTTGATTCCTCCTTTT+GGG | + | chr1.3:17198225-17198244 | None:intergenic | 35.0% |
| !!! | TTGTTGTTGATTCCTCCTTT+TGG | + | chr1.3:17198226-17198245 | None:intergenic | 35.0% |
| ACGAGTTTGATGAACCCAAA+AGG | - | chr1.3:17198208-17198227 | MS.gene25196:CDS | 40.0% | |
| AGTTTGATGAACCCAAAAGG+AGG | - | chr1.3:17198211-17198230 | MS.gene25196:CDS | 40.0% | |
| ATAGATCTGTGGGTTCAAAG+AGG | - | chr1.3:17198942-17198961 | MS.gene25196:CDS | 40.0% | |
| ATCTCATCATCATCGGTACT+CGG | + | chr1.3:17201250-17201269 | None:intergenic | 40.0% | |
| CCCAAATGAGGATTCTCAAA+TGG | + | chr1.3:17198348-17198367 | None:intergenic | 40.0% | |
| CCCATTTGAGAATCCTCATT+TGG | - | chr1.3:17198344-17198363 | MS.gene25196:CDS | 40.0% | |
| CTGTGATGTCTGGAAAAGTA+GGG | + | chr1.3:17200222-17200241 | None:intergenic | 40.0% | |
| CTTACCCTTTCCAAACCATT+CGG | + | chr1.3:17201275-17201294 | None:intergenic | 40.0% | |
| GAAAACTGCAAAGGATTTGG+TGG | - | chr1.3:17199366-17199385 | MS.gene25196:CDS | 40.0% | |
| GAAACGGAAACTGTTTGTGT+AGG | - | chr1.3:17200795-17200814 | MS.gene25196:intron | 40.0% | |
| GATAGAAAAGTGGTCAACTC+AGG | - | chr1.3:17199817-17199836 | MS.gene25196:intron | 40.0% | |
| GATTATCTACACCATCAGCT+TGG | - | chr1.3:17199254-17199273 | MS.gene25196:CDS | 40.0% | |
| GCAGAAAACTGCAAAGGATT+TGG | - | chr1.3:17199363-17199382 | MS.gene25196:CDS | 40.0% | |
| GGATGAGAAATCTGAAAAGC+GGG | + | chr1.3:17198258-17198277 | None:intergenic | 40.0% | |
| GTGCGTATTAGAAAGGATGT+GGG | - | chr1.3:17199109-17199128 | MS.gene25196:CDS | 40.0% | |
| GTGTAGCTCGTGTAATTTGA+GGG | - | chr1.3:17199997-17200016 | MS.gene25196:intron | 40.0% | |
| TAGATCTGTGGGTTCAAAGA+GGG | - | chr1.3:17198943-17198962 | MS.gene25196:CDS | 40.0% | |
| TATCCACTGAACCGATGATT+GGG | + | chr1.3:17200114-17200133 | None:intergenic | 40.0% | |
| TATGAACATGTCCAAGCTGA+TGG | + | chr1.3:17199268-17199287 | None:intergenic | 40.0% | |
| TATGGACTTGACCCAATCAT+CGG | - | chr1.3:17200100-17200119 | MS.gene25196:intron | 40.0% | |
| TCAAACGCAGAAAACTGCAA+AGG | - | chr1.3:17199357-17199376 | MS.gene25196:CDS | 40.0% | |
| TCCATTAAGTCTACCCATTC+AGG | + | chr1.3:17198285-17198304 | None:intergenic | 40.0% | |
| TCCTTTCTAATACGCACGTA+CGG | + | chr1.3:17199106-17199125 | None:intergenic | 40.0% | |
| TCTGTGATGTCTGGAAAAGT+AGG | + | chr1.3:17200223-17200242 | None:intergenic | 40.0% | |
| TGAACCCACAGATCTATAAG+GGG | + | chr1.3:17198939-17198958 | None:intergenic | 40.0% | |
| TGTAGCTCGTGTAATTTGAG+GGG | - | chr1.3:17199998-17200017 | MS.gene25196:intron | 40.0% | |
| TGTGATGTCTGGAAAAGTAG+GGG | + | chr1.3:17200221-17200240 | None:intergenic | 40.0% | |
| TGTGTAGCTCGTGTAATTTG+AGG | - | chr1.3:17199996-17200015 | MS.gene25196:intron | 40.0% | |
| TGTGTTTGGGTATGTAGGTA+AGG | - | chr1.3:17198509-17198528 | MS.gene25196:CDS | 40.0% | |
| TTATCCACTGAACCGATGAT+TGG | + | chr1.3:17200115-17200134 | None:intergenic | 40.0% | |
| TTCAGTTAAAGCAAGGCGAT+TGG | - | chr1.3:17200296-17200315 | MS.gene25196:intron | 40.0% | |
| TTGTCCCCTTATAGATCTGT+GGG | - | chr1.3:17198932-17198951 | MS.gene25196:CDS | 40.0% | |
| TTTGTCCCCTTATAGATCTG+TGG | - | chr1.3:17198931-17198950 | MS.gene25196:CDS | 40.0% | |
| ! | TACTTTTCCAGACATCACAG+AGG | - | chr1.3:17200222-17200241 | MS.gene25196:intron | 40.0% |
| ! | TGGGTTCATCAAACTCGTTT+TGG | + | chr1.3:17198206-17198225 | None:intergenic | 40.0% |
| !! | AAAGGGTCATTTTCATGCAG+AGG | - | chr1.3:17198317-17198336 | MS.gene25196:CDS | 40.0% |
| !! | AAGGGTCATTTTCATGCAGA+GGG | - | chr1.3:17198318-17198337 | MS.gene25196:CDS | 40.0% |
| !! | CTAACTTATTTCTGAACGCG+GGG | - | chr1.3:17199016-17199035 | MS.gene25196:intron | 40.0% |
| !! | TTTGCAGGATATCGGTTTGA+TGG | - | chr1.3:17200956-17200975 | MS.gene25196:intron | 40.0% |
| AAACCGTCGCATTAATCCAG+GGG | - | chr1.3:17200700-17200719 | MS.gene25196:intron | 45.0% | |
| AACCGATATCCTGCAAAAGC+AGG | + | chr1.3:17200953-17200972 | None:intergenic | 45.0% | |
| AATTACACGAGCTACACACC+TGG | + | chr1.3:17199994-17200013 | None:intergenic | 45.0% | |
| ACCTGGCAAGAAAAGTCAGT+TGG | + | chr1.3:17199744-17199763 | None:intergenic | 45.0% | |
| AGTCGCCAAATCAGTCCAAA+AGG | - | chr1.3:17201176-17201195 | MS.gene25196:CDS | 45.0% | |
| ATCCAGTCTCCCTTCTTCAA+AGG | + | chr1.3:17200529-17200548 | None:intergenic | 45.0% | |
| CAAACCGTCGCATTAATCCA+GGG | - | chr1.3:17200699-17200718 | MS.gene25196:intron | 45.0% | |
| CCTTTCTAATACGCACGTAC+GGG | + | chr1.3:17199105-17199124 | None:intergenic | 45.0% | |
| CGTGCGTATTAGAAAGGATG+TGG | - | chr1.3:17199108-17199127 | MS.gene25196:CDS | 45.0% | |
| CTCTTTCTTTCTGACGTCCT+TGG | + | chr1.3:17200995-17201014 | None:intergenic | 45.0% | |
| GCCTGAATGGGTAGACTTAA+TGG | - | chr1.3:17198281-17198300 | MS.gene25196:CDS | 45.0% | |
| GGATTAATGCGACGGTTTGA+AGG | + | chr1.3:17200698-17200717 | None:intergenic | 45.0% | |
| GTAGCTCGTGTAATTTGAGG+GGG | - | chr1.3:17199999-17200018 | MS.gene25196:intron | 45.0% | |
| TAGCATGTCTGAGCCACAAA+GGG | - | chr1.3:17201135-17201154 | MS.gene25196:CDS | 45.0% | |
| TAGCTCGTGTAATTTGAGGG+GGG | - | chr1.3:17200000-17200019 | MS.gene25196:intron | 45.0% | |
| TCAAACCGTCGCATTAATCC+AGG | - | chr1.3:17200698-17200717 | MS.gene25196:intron | 45.0% | |
| TTCGGCCATCTCATCATCAT+CGG | + | chr1.3:17201257-17201276 | None:intergenic | 45.0% | |
| TTCTCATCCATGGCCTGAAT+GGG | - | chr1.3:17198269-17198288 | MS.gene25196:CDS | 45.0% | |
| TTTCTCATCCATGGCCTGAA+TGG | - | chr1.3:17198268-17198287 | MS.gene25196:CDS | 45.0% | |
| ! | ACTTTGCCAAGCATGCCTTT+TGG | + | chr1.3:17201194-17201213 | None:intergenic | 45.0% |
| ! | ATCAGTCCAAAAGGCATGCT+TGG | - | chr1.3:17201185-17201204 | MS.gene25196:CDS | 45.0% |
| ! | ATGATGATGAGATGGCCGAA+TGG | - | chr1.3:17201257-17201276 | MS.gene25196:CDS | 45.0% |
| ! | ATGGCCGAATGGTTTGGAAA+GGG | - | chr1.3:17201268-17201287 | MS.gene25196:CDS | 45.0% |
| ! | GCATGCCTTTTGGACTGATT+TGG | + | chr1.3:17201184-17201203 | None:intergenic | 45.0% |
| ! | TACCTTTGAAGAAGGGAGAC+TGG | - | chr1.3:17200524-17200543 | MS.gene25196:intron | 45.0% |
| !! | AAAAGCAGACCTGCTTTTGC+AGG | - | chr1.3:17200941-17200960 | MS.gene25196:intron | 45.0% |
| !! | AGCATATGCAGGCATTGATG+AGG | - | chr1.3:17199852-17199871 | MS.gene25196:intron | 45.0% |
| !! | CTAGTCTTACCTCCAGCAAT+AGG | + | chr1.3:17201118-17201137 | None:intergenic | 45.0% |
| !! | GACCTGCTTTTGCAGGATAT+CGG | - | chr1.3:17200948-17200967 | MS.gene25196:intron | 45.0% |
| !! | GAGTACCGATGATGATGAGA+TGG | - | chr1.3:17201249-17201268 | MS.gene25196:CDS | 45.0% |
| !! | GCATATGCAGGCATTGATGA+GGG | - | chr1.3:17199853-17199872 | MS.gene25196:intron | 45.0% |
| !! | GGCATTGATGAGGGAAATGT+TGG | - | chr1.3:17199862-17199881 | MS.gene25196:intron | 45.0% |
| !! | TCCAACTGACTTTTCTTGCC+AGG | - | chr1.3:17199740-17199759 | MS.gene25196:intron | 45.0% |
| !!! | CAGGTCTGCTTTTTTCACAG+TGG | + | chr1.3:17200934-17200953 | None:intergenic | 45.0% |
| AAAGCACGCGAAGATGAAGG+TGG | - | chr1.3:17200043-17200062 | MS.gene25196:intron | 50.0% | |
| AAGTCTACCCATTCAGGCCA+TGG | + | chr1.3:17198279-17198298 | None:intergenic | 50.0% | |
| ACAGCAACCTCTGTGATGTC+TGG | + | chr1.3:17200232-17200251 | None:intergenic | 50.0% | |
| ACTCCCCTGGATTAATGCGA+CGG | + | chr1.3:17200706-17200725 | None:intergenic | 50.0% | |
| ATTTGAGGGGGGACTGTGAA+AGG | - | chr1.3:17200011-17200030 | MS.gene25196:intron | 50.0% | |
| CACAGAAGTTGTCACAGTGG+AGG | + | chr1.3:17200465-17200484 | None:intergenic | 50.0% | |
| CCACTGTGACAACTTCTGTG+AGG | - | chr1.3:17200465-17200484 | MS.gene25196:intron | 50.0% | |
| CCCGTACGTGCGTATTAGAA+AGG | - | chr1.3:17199102-17199121 | MS.gene25196:CDS | 50.0% | |
| CCTCACAGAAGTTGTCACAG+TGG | + | chr1.3:17200468-17200487 | None:intergenic | 50.0% | |
| CTAGCATGTCTGAGCCACAA+AGG | - | chr1.3:17201134-17201153 | MS.gene25196:CDS | 50.0% | |
| GATGAGATGGCCGAATGGTT+TGG | - | chr1.3:17201262-17201281 | MS.gene25196:CDS | 50.0% | |
| GGACGTCAGAAAGAAAGAGC+AGG | - | chr1.3:17200996-17201015 | MS.gene25196:CDS | 50.0% | |
| TCGCATTAATCCAGGGGAGT+GGG | - | chr1.3:17200706-17200725 | MS.gene25196:intron | 50.0% | |
| TTTGAGGGGGGACTGTGAAA+GGG | - | chr1.3:17200012-17200031 | MS.gene25196:intron | 50.0% | |
| ! | AAGCGTCTGAGAGCATATGC+AGG | - | chr1.3:17199841-17199860 | MS.gene25196:intron | 50.0% |
| ! | GATGGCCGAATGGTTTGGAA+AGG | - | chr1.3:17201267-17201286 | MS.gene25196:CDS | 50.0% |
| ! | GTGAAAGCACGCGAAGATGA+AGG | - | chr1.3:17200040-17200059 | MS.gene25196:intron | 50.0% |
| !! | TGACCCAATCATCGGTTCAG+TGG | - | chr1.3:17200108-17200127 | MS.gene25196:intron | 50.0% |
| GTCGCATTAATCCAGGGGAG+TGG | - | chr1.3:17200705-17200724 | MS.gene25196:intron | 55.0% | |
| GACTCGCATTCCCACTCCCC+TGG | + | chr1.3:17200719-17200738 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 17198090 | 17201306 | 17198090 | ID=MS.gene25196 |
| chr1.3 | mRNA | 17198090 | 17201306 | 17198090 | ID=MS.gene25196.t1;Parent=MS.gene25196 |
| chr1.3 | exon | 17200960 | 17201306 | 17200960 | ID=MS.gene25196.t1.exon1;Parent=MS.gene25196.t1 |
| chr1.3 | CDS | 17200960 | 17201306 | 17200960 | ID=cds.MS.gene25196.t1;Parent=MS.gene25196.t1 |
| chr1.3 | exon | 17199517 | 17199634 | 17199517 | ID=MS.gene25196.t1.exon2;Parent=MS.gene25196.t1 |
| chr1.3 | CDS | 17199517 | 17199634 | 17199517 | ID=cds.MS.gene25196.t1;Parent=MS.gene25196.t1 |
| chr1.3 | exon | 17199067 | 17199401 | 17199067 | ID=MS.gene25196.t1.exon3;Parent=MS.gene25196.t1 |
| chr1.3 | CDS | 17199067 | 17199401 | 17199067 | ID=cds.MS.gene25196.t1;Parent=MS.gene25196.t1 |
| chr1.3 | exon | 17198839 | 17198970 | 17198839 | ID=MS.gene25196.t1.exon4;Parent=MS.gene25196.t1 |
| chr1.3 | CDS | 17198839 | 17198970 | 17198839 | ID=cds.MS.gene25196.t1;Parent=MS.gene25196.t1 |
| chr1.3 | exon | 17198658 | 17198756 | 17198658 | ID=MS.gene25196.t1.exon5;Parent=MS.gene25196.t1 |
| chr1.3 | CDS | 17198658 | 17198756 | 17198658 | ID=cds.MS.gene25196.t1;Parent=MS.gene25196.t1 |
| chr1.3 | exon | 17198090 | 17198579 | 17198090 | ID=MS.gene25196.t1.exon6;Parent=MS.gene25196.t1 |
| chr1.3 | CDS | 17198090 | 17198579 | 17198090 | ID=cds.MS.gene25196.t1;Parent=MS.gene25196.t1 |
| Gene Sequence |
| Protein sequence |
