AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25262

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 60 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTCCCTGCATATT+TGG 0.259970 8.2:+7948102 None:intergenic
AACTGTATTCCCGGGTGAAA+TGG 0.321202 8.2:+7948132 None:intergenic
CCTCGTAACAATGCTAGAAT+TGG 0.335567 8.2:-7950015 MS.gene25262:CDS
TTCCCGGGTGAAATGGATAA+TGG 0.363835 8.2:+7948139 None:intergenic
TTTAAGATCTTTGACCTCTT+CGG 0.402758 8.2:+7948877 None:intergenic
GGAGTACAAAACTGTATTCC+CGG 0.420138 8.2:+7948123 None:intergenic
TATCAAGACTCTGTCATTCA+AGG 0.421253 8.2:+7948853 None:intergenic
CCTTCGTCATCCACAGGCCC+TGG 0.444066 8.2:+7948172 None:intergenic
GGCTTTGATTGAGCAGTTGA+TGG 0.449739 8.2:+7949165 None:intergenic
CTGTTGCCTTCGTCATCCAC+AGG 0.452383 8.2:+7948166 None:intergenic
CAGGTGATAGCTGTTGGTCC+AGG 0.460455 8.2:-7948190 MS.gene25262:CDS
GAATGACAGAGTCTTGATAA+AGG 0.473936 8.2:-7948849 MS.gene25262:intron
TTGGAGACGGGAAGACAGTT+GGG 0.483437 8.2:-7949119 MS.gene25262:CDS
GCCAATGGATGGCTTATCCT+TGG 0.505865 8.2:+7948615 None:intergenic
AATGACTTCAAAGGCAAAGA+TGG 0.508584 8.2:-7948088 MS.gene25262:CDS
GAGGTAGTTGCTGTTGGAGA+CGG 0.521962 8.2:-7949132 MS.gene25262:CDS
GTTGGAGACGGGAAGACAGT+TGG 0.523055 8.2:-7949120 MS.gene25262:CDS
TGCTGGTGGTTTGTTGCTCA+CGG 0.524264 8.2:-7948644 MS.gene25262:CDS
ATCAAGACTCTGTCATTCAA+GGG 0.529761 8.2:+7948854 None:intergenic
CTGCTCAATCAAAGCCTCAA+GGG 0.533192 8.2:-7949158 MS.gene25262:CDS
AGGTAGTTGCTGTTGGAGAC+GGG 0.539082 8.2:-7949131 MS.gene25262:CDS
GCCACTAGGTGATAGAGTAC+TGG 0.539283 8.2:-7949235 MS.gene25262:CDS
AAGCTTACCGTGCCAATGGA+TGG 0.542126 8.2:+7948604 None:intergenic
AGAAAAGCTTACCGTGCCAA+TGG 0.548046 8.2:+7948600 None:intergenic
GGAACTGAAGTGGAGTTCAA+TGG 0.549387 8.2:-7948950 MS.gene25262:CDS
AGCTGTTGGTCCAGGGCCTG+TGG 0.552111 8.2:-7948182 MS.gene25262:CDS
GCGGCTTTAACAACAATAGA+CGG 0.565089 8.2:+7949970 None:intergenic
TTCAAAACATCTTATACTGA+AGG 0.568271 8.2:-7948927 MS.gene25262:CDS
CATACAACTGTCAAGCCACT+AGG 0.568378 8.2:-7949249 MS.gene25262:CDS
ACCAAGGATAAGCCATCCAT+TGG 0.568643 8.2:-7948616 MS.gene25262:CDS
TATGCAGGGAATGACTTCAA+AGG 0.569312 8.2:-7948097 MS.gene25262:CDS
TTTGAGAGCCTCAGATGTCA+TGG 0.571249 8.2:-7948050 MS.gene25262:CDS
GAGTACAAAACTGTATTCCC+GGG 0.572521 8.2:+7948124 None:intergenic
CTGAAGGATGATGACATCGT+TGG 0.572824 8.2:-7948911 MS.gene25262:CDS
TGCTCAATCAAAGCCTCAAG+GGG 0.578517 8.2:-7949157 MS.gene25262:CDS
AGGTGATAGCTGTTGGTCCA+GGG 0.579593 8.2:-7948189 MS.gene25262:CDS
AAAGTATGCAGGAACTGAAG+TGG 0.581171 8.2:-7948960 MS.gene25262:CDS
ACTGCTCAATCAAAGCCTCA+AGG 0.582194 8.2:-7949159 MS.gene25262:CDS
GTTGTGTACTCAAAGTATGC+AGG 0.590902 8.2:-7948971 MS.gene25262:CDS
AAACCATTATCCATTTCACC+CGG 0.592297 8.2:-7948142 MS.gene25262:CDS
CGGCTTTAACAACAATAGAC+GGG 0.595648 8.2:+7949971 None:intergenic
GGATGCAGAAGAGAAAACTC+AGG 0.597980 8.2:-7949202 MS.gene25262:CDS
ACCAGTACTCTATCACCTAG+TGG 0.604909 8.2:+7949234 None:intergenic
CAAAGTGGACATTAGTGTGA+AGG 0.607471 8.2:-7949091 MS.gene25262:intron
GAATTGGTATTCTTACACAA+AGG 0.614844 8.2:-7949999 MS.gene25262:CDS
CCAGGGCCTGTGGATGACGA+AGG 0.620963 8.2:-7948172 MS.gene25262:CDS
AAAATAGCCAAAATTAAGAG+AGG 0.622578 8.2:+7948023 None:intergenic
GTTGCTCACGGAAGCAACCA+AGG 0.626344 8.2:-7948632 MS.gene25262:CDS
GAGGATAGCCATGACATCTG+AGG 0.634831 8.2:+7948042 None:intergenic
CCAATTCTAGCATTGTTACG+AGG 0.641555 8.2:+7950015 None:intergenic
AACCATTATCCATTTCACCC+GGG 0.641591 8.2:-7948141 MS.gene25262:CDS
GGATAAGCCATCCATTGGCA+CGG 0.647992 8.2:-7948611 MS.gene25262:intron
TGGTATTCTTGAAACCGAAG+AGG 0.662324 8.2:-7948891 MS.gene25262:CDS
GCTGCAGGTTGCAGAAGCTG+AGG 0.680718 8.2:-7948674 MS.gene25262:intron
GATGCAGAAGAGAAAACTCA+GGG 0.684794 8.2:-7949201 MS.gene25262:CDS
ATGTAACAGGTGATAGCTGT+TGG 0.691284 8.2:-7948196 MS.gene25262:intron
GACAGTTGGGAAGAACAAAG+TGG 0.692016 8.2:-7949106 MS.gene25262:CDS
TGTTACGAGGAAAATGAATG+CGG 0.716045 8.2:+7950028 None:intergenic
GCAGAAGAGAAAACTCAGGG+TGG 0.728959 8.2:-7949198 MS.gene25262:CDS
GCTCAATCAAAGCCTCAAGG+GGG 0.730531 8.2:-7949156 MS.gene25262:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAATAATACCT+TGG + chr8.2:7948146-7948165 None:intergenic 10.0%
!! AAAAATAAAAATAATACCTT+GGG + chr8.2:7948145-7948164 None:intergenic 10.0%
!! TTCAAAAAAATTAAAAACAA+TGG - chr8.2:7949617-7949636 MS.gene25262:intron 10.0%
!!! AAGGTATTATTTTTATTTTT+TGG - chr8.2:7948145-7948164 MS.gene25262:CDS 10.0%
!!! AGGTATTATTTTTATTTTTT+GGG - chr8.2:7948146-7948165 MS.gene25262:CDS 10.0%
!! AAAAAATTAAAAACAATGGA+TGG - chr8.2:7949621-7949640 MS.gene25262:intron 15.0%
!! AAAATAAAAATAATACCTTG+GGG + chr8.2:7948144-7948163 None:intergenic 15.0%
!! ACGAAAAATATCATAAATAT+TGG + chr8.2:7948623-7948642 None:intergenic 15.0%
!! GTTAAGACAAATAATTAAAT+GGG + chr8.2:7949309-7949328 None:intergenic 15.0%
!! AAATAAAAATAATACCTTGG+GGG + chr8.2:7948143-7948162 None:intergenic 20.0%
!! AAGTATACTGTTTCAAAAAA+AGG + chr8.2:7949507-7949526 None:intergenic 20.0%
!! ACAAGATGAAATTACTAATA+AGG + chr8.2:7948805-7948824 None:intergenic 20.0%
!! GAAAAATATTCAAAAATGGT+GGG + chr8.2:7948597-7948616 None:intergenic 20.0%
!! GGTTAAGACAAATAATTAAA+TGG + chr8.2:7949310-7949329 None:intergenic 20.0%
!! GTCTGAAAAATATTCAAAAA+TGG + chr8.2:7948601-7948620 None:intergenic 20.0%
!! TGAAAAATATTCAAAAATGG+TGG + chr8.2:7948598-7948617 None:intergenic 20.0%
!! TTCAGACCAATAAAAAAAAA+GGG - chr8.2:7948522-7948541 MS.gene25262:intron 20.0%
!! TTTCAGACCAATAAAAAAAA+AGG - chr8.2:7948521-7948540 MS.gene25262:intron 20.0%
!!! TACATTTTCTCTTATACTAA+GGG + chr8.2:7948414-7948433 None:intergenic 20.0%
!!! TATTTTTATTTTTTGGGTCA+TGG - chr8.2:7948152-7948171 MS.gene25262:CDS 20.0%
! TAACACCTTAATGCAAAATA+TGG + chr8.2:7949331-7949350 None:intergenic 25.0%
! TTCAAAACATCTTATACTGA+AGG - chr8.2:7949149-7949168 MS.gene25262:CDS 25.0%
!! ACATTTTCTCTTATACTAAG+GGG + chr8.2:7948413-7948432 None:intergenic 25.0%
!! CTTAACCATATTTTGCATTA+AGG - chr8.2:7949323-7949342 MS.gene25262:intron 25.0%
!! GTAATGTATTTTCTCTTTAC+AGG - chr8.2:7949071-7949090 MS.gene25262:intron 25.0%
!! GTACATTTTCTCTTATACTA+AGG + chr8.2:7948415-7948434 None:intergenic 25.0%
!! TTTATTTATTGCTTTAGCTC+AGG - chr8.2:7949763-7949782 MS.gene25262:intron 25.0%
AAACACTAGAAATAATCCCA+TGG + chr8.2:7948747-7948766 None:intergenic 30.0%
AACACTAGAAATAATCCCAT+GGG + chr8.2:7948746-7948765 None:intergenic 30.0%
AATAAAAAAAAAGGGCAACC+CGG - chr8.2:7948530-7948549 MS.gene25262:intron 30.0%
AGAATTGCAAGAATGTGATT+TGG - chr8.2:7949588-7949607 MS.gene25262:intron 30.0%
ATTAAAAACAATGGATGGTC+TGG - chr8.2:7949626-7949645 MS.gene25262:intron 30.0%
CCAAAATAAAAGAAAGACCA+AGG + chr8.2:7949045-7949064 None:intergenic 30.0%
GAATGGTTATTTACATACCT+AGG + chr8.2:7949848-7949867 None:intergenic 30.0%
GAATTGCAAGAATGTGATTT+GGG - chr8.2:7949589-7949608 MS.gene25262:intron 30.0%
GAATTGGTATTCTTACACAA+AGG - chr8.2:7948077-7948096 MS.gene25262:CDS 30.0%
GCAATGTTATATCGTATGAA+GGG - chr8.2:7949556-7949575 MS.gene25262:intron 30.0%
GTTGTGTTTATAAGCTATCT+TGG - chr8.2:7948265-7948284 MS.gene25262:intron 30.0%
TTGAAAGAGCTTATAGCTTA+TGG + chr8.2:7948332-7948351 None:intergenic 30.0%
! AATAACCATTCTACTCCTTT+TGG - chr8.2:7949857-7949876 MS.gene25262:intron 30.0%
! CATTAAGGTGTTACGTTTAA+AGG - chr8.2:7949338-7949357 MS.gene25262:intron 30.0%
! TGGATTTTCTTCATTATCTG+CGG - chr8.2:7948172-7948191 MS.gene25262:CDS 30.0%
! TTTAAGATCTTTGACCTCTT+CGG + chr8.2:7949202-7949221 None:intergenic 30.0%
! TTTTGTACTCCAAATATGCA+GGG - chr8.2:7949965-7949984 MS.gene25262:CDS 30.0%
!! CCTTGGTCTTTCTTTTATTT+TGG - chr8.2:7949042-7949061 MS.gene25262:intron 30.0%
!! TAGAGTACTGGTAAAAATCA+AGG - chr8.2:7948853-7948872 MS.gene25262:CDS 30.0%
!!! TTGTTTTGATCGAGTAGTTT+TGG - chr8.2:7949821-7949840 MS.gene25262:intron 30.0%
AAACCATTATCCATTTCACC+CGG - chr8.2:7949934-7949953 MS.gene25262:intron 35.0%
AAAGAAAGACCAAGGCTTAA+AGG + chr8.2:7949037-7949056 None:intergenic 35.0%
AACACATTCTACCGTCTTAA+GGG + chr8.2:7949718-7949737 None:intergenic 35.0%
AATGACTTCAAAGGCAAAGA+TGG - chr8.2:7949988-7950007 MS.gene25262:CDS 35.0%
ACCTGCAGCATCATAATTAA+AGG + chr8.2:7949391-7949410 None:intergenic 35.0%
ACTAGCATTATCCCTTAAGA+CGG - chr8.2:7949704-7949723 MS.gene25262:intron 35.0%
ATCAAGACTCTGTCATTCAA+GGG + chr8.2:7949225-7949244 None:intergenic 35.0%
ATCTCATAATGCACTTGAGT+GGG + chr8.2:7948358-7948377 None:intergenic 35.0%
GAATGACAGAGTCTTGATAA+AGG - chr8.2:7949227-7949246 MS.gene25262:CDS 35.0%
GGCAATGTTATATCGTATGA+AGG - chr8.2:7949555-7949574 MS.gene25262:intron 35.0%
TAAAGGATTCCATAAGCTAG+TGG + chr8.2:7949020-7949039 None:intergenic 35.0%
TACATCCAAAAGGAGTAGAA+TGG + chr8.2:7949865-7949884 None:intergenic 35.0%
TATCAAGACTCTGTCATTCA+AGG + chr8.2:7949226-7949245 None:intergenic 35.0%
TATCACCTGTTACATCCAAA+AGG + chr8.2:7949875-7949894 None:intergenic 35.0%
TATCTCATAATGCACTTGAG+TGG + chr8.2:7948359-7948378 None:intergenic 35.0%
TGTTACGAGGAAAATGAATG+CGG + chr8.2:7948051-7948070 None:intergenic 35.0%
TGTTATATCGTATGAAGGGA+AGG - chr8.2:7949560-7949579 MS.gene25262:intron 35.0%
TTATGGAATCCTTTAAGCCT+TGG - chr8.2:7949025-7949044 MS.gene25262:intron 35.0%
! AACACCACTCTTCTAAAAGA+GGG - chr8.2:7949534-7949553 MS.gene25262:intron 35.0%
! GTTTTGTACTCCAAATATGC+AGG - chr8.2:7949964-7949983 MS.gene25262:CDS 35.0%
! TAACACCACTCTTCTAAAAG+AGG - chr8.2:7949533-7949552 MS.gene25262:intron 35.0%
! TGTATTTTCTCTTTACAGGC+AGG - chr8.2:7949075-7949094 MS.gene25262:intron 35.0%
!!! GGGTTGCCCTTTTTTTTTAT+TGG + chr8.2:7948531-7948550 None:intergenic 35.0%
AAAGTATGCAGGAACTGAAG+TGG - chr8.2:7949116-7949135 MS.gene25262:CDS 40.0%
AACCATTATCCATTTCACCC+GGG - chr8.2:7949935-7949954 MS.gene25262:intron 40.0%
ACAGAGTCTTGATAAAGGTG+TGG - chr8.2:7949232-7949251 MS.gene25262:CDS 40.0%
AGAAATAATCCCATGGGACA+GGG + chr8.2:7948740-7948759 None:intergenic 40.0%
ATGTAACAGGTGATAGCTGT+TGG - chr8.2:7949880-7949899 MS.gene25262:intron 40.0%
CAAAGTGGACATTAGTGTGA+AGG - chr8.2:7948985-7949004 MS.gene25262:CDS 40.0%
CAACACATTCTACCGTCTTA+AGG + chr8.2:7949719-7949738 None:intergenic 40.0%
CCAATTCTAGCATTGTTACG+AGG + chr8.2:7948064-7948083 None:intergenic 40.0%
CCTCGTAACAATGCTAGAAT+TGG - chr8.2:7948061-7948080 MS.gene25262:CDS 40.0%
GAAGTCATTCCCTGCATATT+TGG + chr8.2:7949977-7949996 None:intergenic 40.0%
GAGTACAAAACTGTATTCCC+GGG + chr8.2:7949955-7949974 None:intergenic 40.0%
GATGCAGAAGAGAAAACTCA+GGG - chr8.2:7948875-7948894 MS.gene25262:CDS 40.0%
GCCTTTAATTATGATGCTGC+AGG - chr8.2:7949387-7949406 MS.gene25262:intron 40.0%
GGAGTACAAAACTGTATTCC+CGG + chr8.2:7949956-7949975 None:intergenic 40.0%
GTTGTGTACTCAAAGTATGC+AGG - chr8.2:7949105-7949124 MS.gene25262:CDS 40.0%
TAGAAATAATCCCATGGGAC+AGG + chr8.2:7948741-7948760 None:intergenic 40.0%
TATGCAGGGAATGACTTCAA+AGG - chr8.2:7949979-7949998 MS.gene25262:CDS 40.0%
TGGTATTCTTGAAACCGAAG+AGG - chr8.2:7949185-7949204 MS.gene25262:CDS 40.0%
! ATTGCTTTAGCTCAGGTCAT+TGG - chr8.2:7949770-7949789 MS.gene25262:intron 40.0%
! CGGCTTTAACAACAATAGAC+GGG + chr8.2:7948108-7948127 None:intergenic 40.0%
! CTACTCCTTTTGGATGTAAC+AGG - chr8.2:7949867-7949886 MS.gene25262:intron 40.0%
! GCGGCTTTAACAACAATAGA+CGG + chr8.2:7948109-7948128 None:intergenic 40.0%
! TTTAGCTCAGGTCATTGGTT+TGG - chr8.2:7949775-7949794 MS.gene25262:intron 40.0%
!! ATTGCCCTCTTTTAGAAGAG+TGG + chr8.2:7949541-7949560 None:intergenic 40.0%
AACTGTATTCCCGGGTGAAA+TGG + chr8.2:7949947-7949966 None:intergenic 45.0%
ACCAAGGATAAGCCATCCAT+TGG - chr8.2:7949460-7949479 MS.gene25262:intron 45.0%
ACCAGTACTCTATCACCTAG+TGG + chr8.2:7948845-7948864 None:intergenic 45.0%
ACTGCTCAATCAAAGCCTCA+AGG - chr8.2:7948917-7948936 MS.gene25262:CDS 45.0%
AGAAAAGCTTACCGTGCCAA+TGG + chr8.2:7949479-7949498 None:intergenic 45.0%
ATACATAAGCCCTGTCCCAT+GGG - chr8.2:7948728-7948747 MS.gene25262:intron 45.0%
CATACAACTGTCAAGCCACT+AGG - chr8.2:7948827-7948846 MS.gene25262:intron 45.0%
CTACAGCGAGAGATCAAAGT+AGG - chr8.2:7948463-7948482 MS.gene25262:intron 45.0%
CTGAAGGATGATGACATCGT+TGG - chr8.2:7949165-7949184 MS.gene25262:CDS 45.0%
CTGCTCAATCAAAGCCTCAA+GGG - chr8.2:7948918-7948937 MS.gene25262:CDS 45.0%
GAAGCTGAGGAAAAAACTGC+TGG - chr8.2:7949415-7949434 MS.gene25262:intron 45.0%
GACAGTTGGGAAGAACAAAG+TGG - chr8.2:7948970-7948989 MS.gene25262:CDS 45.0%
GGAACTGAAGTGGAGTTCAA+TGG - chr8.2:7949126-7949145 MS.gene25262:CDS 45.0%
GGATGCAGAAGAGAAAACTC+AGG - chr8.2:7948874-7948893 MS.gene25262:CDS 45.0%
GGGATAATGCTAGTTGCTAC+AGG + chr8.2:7949698-7949717 None:intergenic 45.0%
TATACATAAGCCCTGTCCCA+TGG - chr8.2:7948727-7948746 MS.gene25262:intron 45.0%
TGCTCAATCAAAGCCTCAAG+GGG - chr8.2:7948919-7948938 MS.gene25262:CDS 45.0%
TTCCCGGGTGAAATGGATAA+TGG + chr8.2:7949940-7949959 None:intergenic 45.0%
TTTGAGAGCCTCAGATGTCA+TGG - chr8.2:7950026-7950045 MS.gene25262:CDS 45.0%
! GGCTTTGATTGAGCAGTTGA+TGG + chr8.2:7948914-7948933 None:intergenic 45.0%
! TGAGTGATGCCACTAGCTTA+TGG - chr8.2:7949008-7949027 MS.gene25262:intron 45.0%
!!! GATCGAGTAGTTTTGGTCCT+AGG - chr8.2:7949828-7949847 MS.gene25262:intron 45.0%
AAGCTTACCGTGCCAATGGA+TGG + chr8.2:7949475-7949494 None:intergenic 50.0%
AGGTGATAGCTGTTGGTCCA+GGG - chr8.2:7949887-7949906 MS.gene25262:intron 50.0%
GAGGATAGCCATGACATCTG+AGG + chr8.2:7950037-7950056 None:intergenic 50.0%
GCAGAAGAGAAAACTCAGGG+TGG - chr8.2:7948878-7948897 MS.gene25262:CDS 50.0%
GCCAATGGATGGCTTATCCT+TGG + chr8.2:7949464-7949483 None:intergenic 50.0%
GCCACTAGGTGATAGAGTAC+TGG - chr8.2:7948841-7948860 MS.gene25262:intron 50.0%
GCTCAATCAAAGCCTCAAGG+GGG - chr8.2:7948920-7948939 MS.gene25262:CDS 50.0%
GCTGAGGAAAAAACTGCTGG+TGG - chr8.2:7949418-7949437 MS.gene25262:intron 50.0%
GGATAAGCCATCCATTGGCA+CGG - chr8.2:7949465-7949484 MS.gene25262:intron 50.0%
GGGCAGATCATCAAGACAAC+TGG + chr8.2:7949289-7949308 None:intergenic 50.0%
TACCTTGGGGGTAACAACAG+TGG + chr8.2:7948131-7948150 None:intergenic 50.0%
TTGGAGACGGGAAGACAGTT+GGG - chr8.2:7948957-7948976 MS.gene25262:CDS 50.0%
! AGGTAGTTGCTGTTGGAGAC+GGG - chr8.2:7948945-7948964 MS.gene25262:CDS 50.0%
! GAGGTAGTTGCTGTTGGAGA+CGG - chr8.2:7948944-7948963 MS.gene25262:CDS 50.0%
!! TGCTGGTGGTTTGTTGCTCA+CGG - chr8.2:7949432-7949451 MS.gene25262:intron 50.0%
ACTAAAGCTCCCGCATACGC+GGG - chr8.2:7948556-7948575 MS.gene25262:intron 55.0%
ATCAAAGCCTCAAGGGGGTG+AGG - chr8.2:7948925-7948944 MS.gene25262:CDS 55.0%
CACTAAAGCTCCCGCATACG+CGG - chr8.2:7948555-7948574 MS.gene25262:intron 55.0%
CAGGTGATAGCTGTTGGTCC+AGG - chr8.2:7949886-7949905 MS.gene25262:intron 55.0%
CTGTTGCCTTCGTCATCCAC+AGG + chr8.2:7949913-7949932 None:intergenic 55.0%
CTTGGGGGTAACAACAGTGG+CGG + chr8.2:7948128-7948147 None:intergenic 55.0%
GTTGCTCACGGAAGCAACCA+AGG - chr8.2:7949444-7949463 MS.gene25262:intron 55.0%
GTTGGAGACGGGAAGACAGT+TGG - chr8.2:7948956-7948975 MS.gene25262:CDS 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr8.2:7948552-7948571 None:intergenic 55.0%
CGCCACTGTTGTTACCCCCA+AGG - chr8.2:7948126-7948145 MS.gene25262:CDS 60.0%
CTAAAGCTCCCGCATACGCG+GGG - chr8.2:7948557-7948576 MS.gene25262:intron 60.0%
GCAACTACCTCACCCCCTTG+AGG + chr8.2:7948935-7948954 None:intergenic 60.0%
GCTGCAGGTTGCAGAAGCTG+AGG - chr8.2:7949402-7949421 MS.gene25262:intron 60.0%
GGGGGTGAGGTAGTTGCTGT+TGG - chr8.2:7948938-7948957 MS.gene25262:CDS 60.0%
! AAATGGTGGGACCCCCTTCC+CGG + chr8.2:7948584-7948603 None:intergenic 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr8.2:7948551-7948570 None:intergenic 60.0%
AGCTGTTGGTCCAGGGCCTG+TGG - chr8.2:7949894-7949913 MS.gene25262:intron 65.0%
CCAGGGCCTGTGGATGACGA+AGG - chr8.2:7949904-7949923 MS.gene25262:intron 65.0%
CCTTCGTCATCCACAGGCCC+TGG + chr8.2:7949907-7949926 None:intergenic 65.0%
ATACGCGGGGTCCGGGAAGG+GGG - chr8.2:7948570-7948589 MS.gene25262:intron 70.0%
CATACGCGGGGTCCGGGAAG+GGG - chr8.2:7948569-7948588 MS.gene25262:intron 70.0%
CTTCCCGGACCCCGCGTATG+CGG + chr8.2:7948569-7948588 None:intergenic 70.0%
GCATACGCGGGGTCCGGGAA+GGG - chr8.2:7948568-7948587 MS.gene25262:intron 70.0%
TTCCCGGACCCCGCGTATGC+GGG + chr8.2:7948568-7948587 None:intergenic 70.0%
CGCATACGCGGGGTCCGGGA+AGG - chr8.2:7948567-7948586 MS.gene25262:intron 75.0%
CTCCCGCATACGCGGGGTCC+GGG - chr8.2:7948563-7948582 MS.gene25262:intron 75.0%
GCTCCCGCATACGCGGGGTC+CGG - chr8.2:7948562-7948581 MS.gene25262:intron 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 7948036 7950062 7948036 ID=MS.gene25262
chr8.2 mRNA 7948036 7950062 7948036 ID=MS.gene25262.t1;Parent=MS.gene25262
chr8.2 exon 7949951 7950062 7949951 ID=MS.gene25262.t1.exon1;Parent=MS.gene25262.t1
chr8.2 CDS 7949951 7950062 7949951 ID=cds.MS.gene25262.t1;Parent=MS.gene25262.t1
chr8.2 exon 7949092 7949271 7949092 ID=MS.gene25262.t1.exon2;Parent=MS.gene25262.t1
chr8.2 CDS 7949092 7949271 7949092 ID=cds.MS.gene25262.t1;Parent=MS.gene25262.t1
chr8.2 exon 7948850 7949005 7948850 ID=MS.gene25262.t1.exon3;Parent=MS.gene25262.t1
chr8.2 CDS 7948850 7949005 7948850 ID=cds.MS.gene25262.t1;Parent=MS.gene25262.t1
chr8.2 exon 7948612 7948689 7948612 ID=MS.gene25262.t1.exon4;Parent=MS.gene25262.t1
chr8.2 CDS 7948612 7948689 7948612 ID=cds.MS.gene25262.t1;Parent=MS.gene25262.t1
chr8.2 exon 7948036 7948209 7948036 ID=MS.gene25262.t1.exon5;Parent=MS.gene25262.t1
chr8.2 CDS 7948036 7948209 7948036 ID=cds.MS.gene25262.t1;Parent=MS.gene25262.t1
Gene Sequence

>MS.gene25262

GATTGCGAACTTCCGCATTCATTTTCCTCGTAACAATGCTAGAATTGGTATTCTTACACAAAGGTCGTTCCCGTCTATTGTTGTTAAAGCCGCCACTGTTGTTACCCCCAAGGTATTATTTTTATTTTTTGGGTCATGGATTTTCTTCATTATCTGCGGCAAAATTATTCTTTTCAGTAGTATATTATGATAAAATAGAGTTAAATTGTTTTTGTATATGCTGCTATAAGTTGTGTTTATAAGCTATCTTGGAGAACTTGCGAAATTAAGTTGAGAAACACTTATGAAAAGTGCCATAAGCTATAAGCTCTTTCAAACACCCACTCAAGTGCATTATGAGATAGTTATCACACAAGTGCATTATCTTACGAGTGCCCCTTAGTATAAGAGAAAATGTACAATTTGTGAGTAGATAGAGAAAGCGAAGCTACAGCGAGAGATCAAAGTAGGAGTTAGAAAGAGTGAAAAATTCATTTGCAACTAAATTTCAGACCAATAAAAAAAAAGGGCAACCCGGTGCACTAAAGCTCCCGCATACGCGGGGTCCGGGAAGGGGGTCCCACCATTTTTGAATATTTTTCAGACCAATATTTATGATATTTTTCGTACAGAAGAACATTATCTTTTTATTTCGTAAGCGAAATAGCAGACTATTGATATACATTTCATCTTGAATTAACATGTTCATTGATATACATAAGCCCTGTCCCATGGGATTATTTCTAGTGTTTTTACTTCTACATTTTACAATTCAATGCTGCATGCGCCTTATTAGTAATTTCATCTTGTAGCATACAACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATCAAGGATGCAGAAGAGAAAACTCAGGGTGGAATTTTGCTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGACGGGAAGACAGTTGGGAAGAACAAAGTGGACATTAGTGTGAAGGTGAGTGATGCCACTAGCTTATGGAATCCTTTAAGCCTTGGTCTTTCTTTTATTTTGGATTTATGTAATGTATTTTCTCTTTACAGGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGAACTGAAGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATCGTTGGTATTCTTGAAACCGAAGAGGTCAAAGATCTTAAACCCTTGAATGACAGAGTCTTGATAAAGGTGTGGAACTTTTCTGAGATTTGATTATTTCGATGCTCCAGTTGTCTTGATGATCTGCCCATTTAATTATTTGTCTTAACCATATTTTGCATTAAGGTGTTACGTTTAAAGGCAATATTATATCTGAATATTATACATGCCTTTAATTATGATGCTGCAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACGGAAGCAACCAAGGATAAGCCATCCATTGGCACGGTAAGCTTTTCTATTCTCCTTTTTTTGAAACAGTATACTTAAAAAGTAACACCACTCTTCTAAAAGAGGGCAATGTTATATCGTATGAAGGGAAGGTCACAAGAATTGCAAGAATGTGATTTGGGCTGTTTTCAAAAAAATTAAAAACAATGGATGGTCTGGTGAAAATGAACGCATTAGATACTGTCGTGCATTTAATTTTTGTGTTCCTGTAGCAACTAGCATTATCCCTTAAGACGGTAGAATGTGTTGATGACAGTTTAACTGATGCTTATTTTTATTTATTGCTTTAGCTCAGGTCATTGGTTTGGTTCTTACTTGCTTAGCTGTAACATTGTTTTGATCGAGTAGTTTTGGTCCTAGGTATGTAAATAACCATTCTACTCCTTTTGGATGTAACAGGTGATAGCTGTTGGTCCAGGGCCTGTGGATGACGAAGGCAACAGAAAACCATTATCCATTTCACCCGGGAATACAGTTTTGTACTCCAAATATGCAGGGAATGACTTCAAAGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCAGATGTCATGGCTATCCTCTCTTAA
Protein sequence

>MS.gene25262.t1

DCELPHSFSSUQCUNWYSYTKVVPVYCCUSRHCCYPQAYNCQATRUUSTGKNQGCRRENSGWNFAAINCSIKASRGUGSCCWRREDSWEEQSGHUCEGRCTSCVLKVCRNUSGVQWFKTSYTEGUUHRWYSUNRRGQRSUTLEUQSLDKGCRSUGKNCWWFVAHGSNQGUAIHWHGDSCWSRACGURRQQKTIIHFTREYSFVLQICREULQRQRWFULYCFESLRCHGYPLL