AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050099


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050099.t1 MTR_4g057970 99.319 587 4 0 1 587 1 587 0.0 1151
MS.gene050099.t1 MTR_4g084130 64.991 537 185 1 42 575 34 570 0.0 703
MS.gene050099.t1 MTR_4g084130 64.989 457 157 1 122 575 2 458 0.0 599
MS.gene050099.t1 MTR_1g017380 52.952 542 250 4 45 582 43 583 0.0 542
MS.gene050099.t1 MTR_1g017390 52.768 542 251 4 45 582 43 583 0.0 541
MS.gene050099.t1 MTR_1g090140 45.161 558 294 5 28 582 19 567 2.07e-159 468
MS.gene050099.t1 MTR_1g090130 45.422 557 293 5 22 572 6 557 3.78e-156 460
MS.gene050099.t1 MTR_8g017080 42.750 531 296 4 50 574 36 564 3.89e-140 419
MS.gene050099.t1 MTR_0991s0010 54.545 143 62 2 45 184 43 185 4.69e-43 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050099.t1 AT2G28000 85.971 556 77 1 33 587 31 586 0.0 935
MS.gene050099.t1 AT5G18820 60.279 574 213 5 15 583 5 568 0.0 654
MS.gene050099.t1 AT5G56500 51.438 591 276 7 1 584 1 587 0.0 549
MS.gene050099.t1 AT5G56500 51.438 591 276 7 1 584 1 587 0.0 549
MS.gene050099.t1 AT5G18820 61.159 466 172 3 122 583 2 462 0.0 545
MS.gene050099.t1 AT1G55490 53.184 534 243 5 47 574 54 586 0.0 540
MS.gene050099.t1 AT1G55490 53.184 534 243 5 47 574 54 586 0.0 540
MS.gene050099.t1 AT1G55490 53.184 534 243 5 47 574 54 586 0.0 540
MS.gene050099.t1 AT1G55490 53.184 534 243 5 47 574 54 586 0.0 540
MS.gene050099.t1 AT1G55490 53.184 534 243 5 47 574 54 586 0.0 540
MS.gene050099.t1 AT3G13470 51.083 554 266 4 33 582 36 588 0.0 538
MS.gene050099.t1 AT1G26230 45.353 538 285 5 45 574 36 572 4.02e-162 476
MS.gene050099.t1 AT5G18820 59.806 413 160 2 15 426 5 412 3.46e-159 462
MS.gene050099.t1 AT1G26230 45.665 519 275 4 62 574 3 520 9.05e-158 463
MS.gene050099.t1 AT1G26230 45.703 512 271 4 69 574 2 512 1.10e-155 458
MS.gene050099.t1 AT3G23990 43.972 564 307 5 12 573 1 557 4.96e-154 454
MS.gene050099.t1 AT2G33210 43.608 571 301 4 4 572 6 557 6.48e-154 454
MS.gene050099.t1 AT2G33210 45.731 527 277 4 48 572 33 552 6.15e-151 447
MS.gene050099.t1 AT1G26230 45.263 475 256 3 45 516 36 509 3.03e-142 423
MS.gene050099.t1 AT3G13860 43.916 526 291 3 48 571 32 555 2.75e-141 422
MS.gene050099.t1 AT1G26230 44.226 407 223 3 45 448 36 441 5.07e-117 356

Find 170 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAGATTTGTAACAAAT+TGG 0.150058 4.1:-39767575 None:intergenic
GGCAGCAAAAGTTGCATTCT+TGG 0.207810 4.1:-39768468 None:intergenic
GACTACAACGGCTTCGATTT+TGG 0.214195 4.1:+39767031 MS.gene050099:CDS
ATGCTGGTGCAGCTCTAATT+AGG 0.223973 4.1:+39766826 MS.gene050099:CDS
GCACACCTTGTTACCTTTGC+AGG 0.271719 4.1:-39769314 None:intergenic
GAGTTCCAGGCCAGTGATTT+GGG 0.275875 4.1:+39768167 MS.gene050099:CDS
CTCAAGATTTGTAACAAATT+GGG 0.277700 4.1:-39767574 None:intergenic
GGCAGCAGCCACACCTGCCC+TGG 0.281465 4.1:-39769408 None:intergenic
TGAGTTCCAGGCCAGTGATT+TGG 0.282182 4.1:+39768166 MS.gene050099:CDS
TCTAGTGTTTCCTTGATTGC+TGG 0.293279 4.1:-39768551 None:intergenic
CAGAATGCTGCTTCAGTGGC+TGG 0.296833 4.1:+39769341 MS.gene050099:CDS
ACTGCTAGGTGCTGAGTTCC+AGG 0.304928 4.1:+39768154 MS.gene050099:intron
AAGTAGTTGTGGAGAAAATT+AGG 0.307056 4.1:+39769216 MS.gene050099:CDS
ATATCATCTCCACCTTTAAC+AGG 0.315746 4.1:-39767176 None:intergenic
CAAAGGATGAGTTGCAATCT+AGG 0.316293 4.1:+39768285 MS.gene050099:CDS
CTTTGATGGCAGCCACATTA+AGG 0.329763 4.1:-39767779 None:intergenic
AAAGGTGGAGATGATATAAA+AGG 0.339200 4.1:+39767182 MS.gene050099:CDS
TGAAGGGAGGAATGTTGTTT+TGG 0.341715 4.1:+39766725 MS.gene050099:intron
GCCATCAAAGCTCCAGGATT+TGG 0.350317 4.1:+39767792 MS.gene050099:CDS
TGATAAAACAGTAGCGGCTT+TGG 0.352770 4.1:+39767127 MS.gene050099:CDS
AAGTTGGCTAGGCCTGTTAA+AGG 0.361241 4.1:+39767164 MS.gene050099:CDS
ACCAAATCCTGGAGCTTTGA+TGG 0.365679 4.1:-39767793 None:intergenic
ATTGAGGAAGGTATTGTTCC+TGG 0.374607 4.1:+39768491 MS.gene050099:CDS
AGTTTACGATTCGGAGAAAC+TGG 0.376609 4.1:+39768346 MS.gene050099:CDS
CTCAATTGAACAACTCGGTT+TGG 0.387934 4.1:+39768208 MS.gene050099:CDS
AGATATCACTGGTGAGGCTT+TGG 0.395603 4.1:+39767725 MS.gene050099:CDS
AAACGAGGAGGAAGACTCTA+TGG 0.398802 4.1:-39767383 None:intergenic
TTTCTTCTCTCACCAAATCC+TGG 0.401579 4.1:-39767804 None:intergenic
GCTCAAAATGCTGGAATAGA+AGG 0.412779 4.1:+39769191 MS.gene050099:CDS
GCCACACCTGCCCTGGGCTT+AGG 0.417490 4.1:-39769401 None:intergenic
GCTGTTGCTTCTATTTCTGC+TGG 0.418816 4.1:+39767292 MS.gene050099:intron
GCAGCAGCCACACCTGCCCT+GGG 0.419494 4.1:-39769407 None:intergenic
CTTAAACGGTAAGGCCTTGT+GGG 0.430025 4.1:-39769430 None:intergenic
TCAATATTGCAATGTCTTGA+AGG 0.436075 4.1:-39767833 None:intergenic
TGCTGGTGCAGCTCTAATTA+GGG 0.437513 4.1:+39766827 MS.gene050099:CDS
GGTGGAAGAGCTTGAGAAGT+TGG 0.438321 4.1:+39767148 MS.gene050099:CDS
GCTGGAAATGATGAGTTGAT+TGG 0.440283 4.1:+39767310 MS.gene050099:CDS
AACAAGAAGGCCCAAATCAC+TGG 0.445601 4.1:-39768177 None:intergenic
TACCTCGGGGTCCGAGAGTA+AGG 0.449271 4.1:-39766050 None:intergenic
GCATAGCACGGCGTGAATCT+TGG 0.451358 4.1:-39765993 None:intergenic
AGGAGTGGTGAATGGGAGGT+TGG 0.455590 4.1:+39769236 MS.gene050099:CDS
AGAACGGAGAATTGAGGTTG+AGG 0.455957 4.1:-39765752 None:intergenic
GACAGACTCAGTTTACGATT+CGG 0.456644 4.1:+39768337 MS.gene050099:CDS
GGACTTCTCAGTGTGACATC+AGG 0.457635 4.1:+39767074 MS.gene050099:CDS
AGAAAATTAGGAGTGGTGAA+TGG 0.459333 4.1:+39769228 MS.gene050099:CDS
GCTGAAGCAATTGGCAAGGT+TGG 0.460825 4.1:+39767343 MS.gene050099:CDS
GGATGAGTTTGGCAGTCCTA+AGG 0.461802 4.1:+39766746 MS.gene050099:CDS
AAAAGATATAATTCCTCTGT+TGG 0.463003 4.1:+39767659 MS.gene050099:CDS
TGCTTATGTTCCAGCAATCA+AGG 0.463871 4.1:+39768541 MS.gene050099:CDS
TAATTAATCTAAAACTTAAA+CGG 0.464303 4.1:-39769444 None:intergenic
AGATTCACGCCGTGCTATGC+AGG 0.464712 4.1:+39765996 MS.gene050099:CDS
CATTCCTTCTTCGACTTCGA+CGG 0.464884 4.1:-39767413 None:intergenic
GAAAATTAGGAGTGGTGAAT+GGG 0.464921 4.1:+39769229 MS.gene050099:CDS
ACACCATCGTTTACAACCTT+AGG 0.465120 4.1:-39766762 None:intergenic
GCTCGGGAAATCATTAAGCT+TGG 0.465886 4.1:+39767053 MS.gene050099:CDS
TGCTGCTTCAGTGGCTGGGA+TGG 0.468314 4.1:+39769346 MS.gene050099:CDS
AATAATAGTGGTAGAATCCT+TGG 0.468846 4.1:-39768249 None:intergenic
AGGAGCTGACATTGTTCAAA+AGG 0.472940 4.1:+39768592 MS.gene050099:CDS
TCAAGATTTGTAACAAATTG+GGG 0.473091 4.1:-39767573 None:intergenic
GCCTAAGCCCAGGGCAGGTG+TGG 0.478150 4.1:+39769400 MS.gene050099:CDS
CAAGACATTGCAATATTGAC+AGG 0.482708 4.1:+39767837 MS.gene050099:CDS
AAGTTTACGATCCTCAAGTT+CGG 0.483262 4.1:-39768432 None:intergenic
GAGAGGATCGCTAAATTGTC+TGG 0.483357 4.1:+39768371 MS.gene050099:CDS
GGTGTGGCTGCTGCCCCACA+AGG 0.483680 4.1:+39769416 MS.gene050099:CDS
AGGCACAAACGAGTCTTAGC+AGG 0.488076 4.1:+39765884 MS.gene050099:intron
GATGCTGTTGGCCTTACTCT+CGG 0.491933 4.1:+39766039 MS.gene050099:CDS
TCACGCCGTGCTATGCAGGC+TGG 0.498346 4.1:+39766000 MS.gene050099:CDS
TAAAACAGTAGCGGCTTTGG+TGG 0.499019 4.1:+39767130 MS.gene050099:CDS
CTTTGCAGGGTCGATGACTC+CGG 0.499315 4.1:-39769300 None:intergenic
GAAGGCCCAAATCACTGGCC+TGG 0.503715 4.1:-39768172 None:intergenic
AATAGAAGGTGAAGTAGTTG+TGG 0.504535 4.1:+39769205 MS.gene050099:CDS
TGTAATTAACCCTCCCATGT+TGG 0.504603 4.1:-39765915 None:intergenic
TGGTTAGTTACCTGGTTGGT+AGG 0.506460 4.1:-39765775 None:intergenic
ACTAATGACTCAGCTGGAGA+TGG 0.509296 4.1:+39767008 MS.gene050099:CDS
TTGAGGTGCTTTCAACAAGA+AGG 0.515520 4.1:-39768190 None:intergenic
TCATTGATTGCTCAAAATGC+TGG 0.518366 4.1:+39769182 MS.gene050099:CDS
TCTATGGATAAAACACCATC+AGG 0.519843 4.1:-39767367 None:intergenic
AGAATGCTGCTTCAGTGGCT+GGG 0.520388 4.1:+39769342 MS.gene050099:CDS
TATGAGAATTTAATTGACTC+CGG 0.523884 4.1:+39769281 MS.gene050099:CDS
ACAACCGTCGAAGTCGAAGA+AGG 0.524172 4.1:+39767409 MS.gene050099:CDS
TCCTGGAGGAGGTACTGCAT+TGG 0.524231 4.1:+39768508 MS.gene050099:CDS
CACTTGCTTTAACCACAAAA+CGG 0.526937 4.1:-39765951 None:intergenic
CTTCGGCAATGATAAGCAAA+GGG 0.527412 4.1:-39767704 None:intergenic
TATTGAGTTACCTGATGCTA+TGG 0.527504 4.1:+39766800 MS.gene050099:CDS
TCTGCAGAATGCTGCTTCAG+TGG 0.527899 4.1:+39769337 MS.gene050099:CDS
AGCCTCACCAGTGATATCTT+CGG 0.529074 4.1:-39767721 None:intergenic
CAAACCGAGTTGTTCAATTG+AGG 0.529199 4.1:-39768207 None:intergenic
AATCTAAAACTTAAACGGTA+AGG 0.533828 4.1:-39769439 None:intergenic
AATCCTGTGTCAATCAAGAA+AGG 0.534087 4.1:+39767101 MS.gene050099:CDS
AGTAAAACTAATGACTCAGC+TGG 0.535745 4.1:+39767002 MS.gene050099:CDS
GGATCGTAAACTTAGAATTG+AGG 0.536649 4.1:+39768442 MS.gene050099:CDS
GGTAGGAGAACGGAGAATTG+AGG 0.536812 4.1:-39765758 None:intergenic
GTGGCTGCCATCAAAGCTCC+AGG 0.538427 4.1:+39767786 MS.gene050099:CDS
AGCAGGAAGGCGAACCAACA+TGG 0.541019 4.1:+39765901 MS.gene050099:CDS
ATTCCTTTCTTGATTGACAC+AGG 0.542961 4.1:-39767104 None:intergenic
GAGAGTAAGGCCAACAGCAT+CGG 0.544516 4.1:-39766037 None:intergenic
ACAATGATTGCTGAAGCAAT+TGG 0.546352 4.1:+39767334 MS.gene050099:CDS
GAAAAGCCTAAGCCCAGGGC+AGG 0.551086 4.1:+39769395 MS.gene050099:CDS
TGAGGTTGAGGATAGAGCGT+TGG 0.551901 4.1:-39765740 None:intergenic
TATTGCTGATGCTGCATCAA+AGG 0.553754 4.1:+39768268 MS.gene050099:CDS
ACTTAAACGGTAAGGCCTTG+TGG 0.553935 4.1:-39769431 None:intergenic
GAAGGTATTGTTCCTGGAGG+AGG 0.556257 4.1:+39768497 MS.gene050099:CDS
AAAGGATGAGTTGCAATCTA+GGG 0.556934 4.1:+39768286 MS.gene050099:CDS
TTGTCGAAAAGCCTAAGCCC+AGG 0.559479 4.1:+39769390 MS.gene050099:CDS
CGTCGAAGTCGAAGAAGGAA+TGG 0.560458 4.1:+39767414 MS.gene050099:CDS
GATAAACTTGCCGATGCTGT+TGG 0.563462 4.1:+39766027 MS.gene050099:CDS
CAATTCCAGCCTGCATAGCA+CGG 0.564119 4.1:-39766005 None:intergenic
AGGATTTGGTGAGAGAAGAA+AGG 0.566687 4.1:+39767806 MS.gene050099:CDS
CACACCTTGTTACCTTTGCA+GGG 0.568256 4.1:-39769313 None:intergenic
CTAATGACTCAGCTGGAGAT+GGG 0.568805 4.1:+39767009 MS.gene050099:CDS
TGCAGCATCAGCAATAATAG+TGG 0.578409 4.1:-39768261 None:intergenic
ACCAATGCAGTACCTCCTCC+AGG 0.579777 4.1:-39768509 None:intergenic
GCAGGAAGGCGAACCAACAT+GGG 0.584017 4.1:+39765902 MS.gene050099:CDS
ATTGGCAAGGTTGGACCTGA+TGG 0.586040 4.1:+39767352 MS.gene050099:CDS
CACGCAGCTTGTTCACAACA+AGG 0.586245 4.1:-39767752 None:intergenic
AGGAACAATACCTTCCTCAA+TGG 0.588410 4.1:-39768489 None:intergenic
AATTAGGAGTGGTGAATGGG+AGG 0.589015 4.1:+39769232 MS.gene050099:CDS
TGGTGGAGTTGCAGTCATCA+AGG 0.589967 4.1:+39768391 MS.gene050099:CDS
CACTAGAAGACGCAGATGAG+AGG 0.592181 4.1:+39768567 MS.gene050099:CDS
AGTGGTAGAATCCTTGGAGA+TGG 0.595972 4.1:-39768243 None:intergenic
ATCATTGCCGAAGATATCAC+TGG 0.598076 4.1:+39767714 MS.gene050099:CDS
TCTTCGGCAATGATAAGCAA+AGG 0.598336 4.1:-39767705 None:intergenic
CCTGATGCTATGGAAAATGC+TGG 0.601164 4.1:+39766810 MS.gene050099:CDS
ATGACTTGTAGATTGACAGA+GGG 0.604162 4.1:+39767541 MS.gene050099:intron
TGCTACAGAGACCGAACTTG+AGG 0.605909 4.1:+39768421 MS.gene050099:CDS
CGGAGTCATCGACCCTGCAA+AGG 0.605948 4.1:+39769301 MS.gene050099:CDS
GAAATGGTTAGTTACCTGGT+TGG 0.606997 4.1:-39765779 None:intergenic
TCGACCCTGCAAAGGTAACA+AGG 0.607538 4.1:+39769309 MS.gene050099:CDS
ACGGCGTGAATCTTGGTCAA+AGG 0.607568 4.1:-39765986 None:intergenic
AAGAGCTTGAGAAGTTGGCT+AGG 0.608935 4.1:+39767153 MS.gene050099:CDS
TATTGCAATGTCTTGAAGGA+GGG 0.612191 4.1:-39767829 None:intergenic
GAAGACGCAGATGAGAGGCT+AGG 0.612286 4.1:+39768572 MS.gene050099:CDS
CAAGATTTGTAACAAATTGG+GGG 0.614790 4.1:-39767572 None:intergenic
TTGGCTAGGCCTGTTAAAGG+TGG 0.615079 4.1:+39767167 MS.gene050099:CDS
TCTCCGTTCTCCTACCAACC+AGG 0.616314 4.1:+39765765 MS.gene050099:CDS
AGACAATTTAGCGATCCTCT+CGG 0.616828 4.1:-39768369 None:intergenic
TTACCTGGTTGGTAGGAGAA+CGG 0.618698 4.1:-39765768 None:intergenic
GGAGTTGCAGTCATCAAGGT+CGG 0.619796 4.1:+39768395 MS.gene050099:CDS
CAAAGGGGCTCTCAATTGAG+TGG 0.620297 4.1:-39767688 None:intergenic
ATTCTCATAAGTGTCTGTCA+TGG 0.622423 4.1:-39769267 None:intergenic
AAGATTTGTAACAAATTGGG+GGG 0.629058 4.1:-39767571 None:intergenic
TTCGACAACAATGGCCTGTG+TGG 0.630520 4.1:-39769375 None:intergenic
GGAAGGCGAACCAACATGGG+AGG 0.631849 4.1:+39765905 MS.gene050099:CDS
GTTGTGGAGAAAATTAGGAG+TGG 0.632624 4.1:+39769221 MS.gene050099:CDS
ATATTGCAATGTCTTGAAGG+AGG 0.635052 4.1:-39767830 None:intergenic
TGCCGAAGATATCACTGGTG+AGG 0.639474 4.1:+39767719 MS.gene050099:CDS
AGGATCGCTAAATTGTCTGG+TGG 0.640845 4.1:+39768374 MS.gene050099:CDS
ATTCGGAGAAACTGGCCGAG+AGG 0.643581 4.1:+39768354 MS.gene050099:CDS
TCGAAAAGTGACCATCTCCA+AGG 0.643733 4.1:+39768232 MS.gene050099:CDS
AGCACCTCAATTGAACAACT+CGG 0.644633 4.1:+39768203 MS.gene050099:CDS
TATGACTTGTAGATTGACAG+AGG 0.649175 4.1:+39767540 MS.gene050099:intron
GGCCTTACTCTCGGACCCCG+AGG 0.649612 4.1:+39766048 MS.gene050099:CDS
TGTCGAAAAGCCTAAGCCCA+GGG 0.650837 4.1:+39769391 MS.gene050099:CDS
AGGAATTGATAAAACAGTAG+CGG 0.654535 4.1:+39767121 MS.gene050099:CDS
GAAGGCGAACCAACATGGGA+GGG 0.655547 4.1:+39765906 MS.gene050099:CDS
GATTGCTGAAGCAATTGGCA+AGG 0.668567 4.1:+39767339 MS.gene050099:CDS
AGTCCTAAGGTTGTAAACGA+TGG 0.671771 4.1:+39766759 MS.gene050099:CDS
ACAAACGAGTCTTAGCAGGA+AGG 0.673717 4.1:+39765888 MS.gene050099:CDS
GCTGCGTGGTATCCTTAATG+TGG 0.674392 4.1:+39767767 MS.gene050099:CDS
TTAAACGGTAAGGCCTTGTG+GGG 0.676362 4.1:-39769429 None:intergenic
GACGGTTGTCTCAAACGAGG+AGG 0.683850 4.1:-39767395 None:intergenic
CGAAGTCGAAGAAGGAATGG+AGG 0.684643 4.1:+39767417 MS.gene050099:CDS
AGCTGGAGATGGGACTACAA+CGG 0.691077 4.1:+39767019 MS.gene050099:CDS
TGGTGCAGCTCTAATTAGGG+AGG 0.702507 4.1:+39766830 MS.gene050099:CDS
ACGCAGCTTGTTCACAACAA+GGG 0.703024 4.1:-39767751 None:intergenic
GAGGAAGGTATTGTTCCTGG+AGG 0.714595 4.1:+39768494 MS.gene050099:CDS
TGGGATGGTCTTGACCACAC+AGG 0.718657 4.1:+39769361 MS.gene050099:CDS
TTCGGCAATGATAAGCAAAG+GGG 0.721019 4.1:-39767703 None:intergenic
CTTGTTGTGAACAAGCTGCG+TGG 0.747846 4.1:+39767753 MS.gene050099:CDS
TTCGACGGTTGTCTCAAACG+AGG 0.759858 4.1:-39767398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATGAAAATGAATTA+AGG - chr4.1:39765806-39765825 None:intergenic 10.0%
!! ATTAAATGAAAATGAATTAA+GGG - chr4.1:39765805-39765824 None:intergenic 10.0%
!! TGTTTAATCATGTTAAATAA+TGG + chr4.1:39767954-39767973 MS.gene050099:intron 15.0%
!! TTAAATGAAAATGAATTAAG+GGG - chr4.1:39765804-39765823 None:intergenic 15.0%
!!! TAGTATTATTGCTATTATAT+GGG + chr4.1:39766665-39766684 MS.gene050099:intron 15.0%
!!! TATTCTTTTTTTGTTTGAAT+CGG + chr4.1:39766928-39766947 MS.gene050099:intron 15.0%
!!! TTAGTATTATTGCTATTATA+TGG + chr4.1:39766664-39766683 MS.gene050099:intron 15.0%
!! AAAAAGGGATGAAAAATAAA+TGG - chr4.1:39769054-39769073 None:intergenic 20.0%
!! AAAAGCAATAAAATTAGAAG+TGG - chr4.1:39767521-39767540 None:intergenic 20.0%
!! AAATAATATCAACATTTCCA+GGG + chr4.1:39768806-39768825 MS.gene050099:intron 20.0%
!! ATAAATAGCTTATTCATAAG+CGG - chr4.1:39766328-39766347 None:intergenic 20.0%
!! ATTGTTGTAAATTGTAATCA+TGG - chr4.1:39768686-39768705 None:intergenic 20.0%
!! GCTTGAAACATTAATTTATA+AGG - chr4.1:39768844-39768863 None:intergenic 20.0%
!! TACATTTCAAAAAGATACAT+GGG - chr4.1:39766548-39766567 None:intergenic 20.0%
!! TACTATAAGAACATTTGATT+TGG + chr4.1:39767214-39767233 MS.gene050099:intron 20.0%
!! TTGAATGTAATTATATGTGT+TGG + chr4.1:39766090-39766109 MS.gene050099:intron 20.0%
!!! AAAGTAATATCAACATTTTC+AGG + chr4.1:39768887-39768906 MS.gene050099:intron 20.0%
!!! AATTTTCGATTATTTGTTTC+AGG + chr4.1:39765864-39765883 MS.gene050099:intron 20.0%
!!! AGGAATTATATCTTTTATTG+CGG - chr4.1:39767655-39767674 None:intergenic 20.0%
!!! ATATTGATGAAGTTTTGATA+GGG - chr4.1:39769080-39769099 None:intergenic 20.0%
!!! ATTTTGTAATTAAGTGCTTT+TGG - chr4.1:39765833-39765852 None:intergenic 20.0%
!!! CATAAACTAAATTTTTGAAC+AGG - chr4.1:39767985-39768004 None:intergenic 20.0%
!!! GTTGTTTTAATAAACTATAC+CGG + chr4.1:39766395-39766414 MS.gene050099:intron 20.0%
!!! TGAATCTGAATGTATTTTTT+CGG + chr4.1:39766246-39766265 MS.gene050099:intron 20.0%
!!! TTTGAAGATTTTTGTGTATA+TGG + chr4.1:39766897-39766916 MS.gene050099:intron 20.0%
!!! TTTTGTAATTAAGTGCTTTT+GGG - chr4.1:39765832-39765851 None:intergenic 20.0%
!!! TTTTTTTTTTTATTGAAGGG+AGG + chr4.1:39766712-39766731 MS.gene050099:intron 20.0%
! AAAAGATATAATTCCTCTGT+TGG + chr4.1:39767659-39767678 MS.gene050099:CDS 25.0%
! AAACAATAATCATAGCATAC+TGG - chr4.1:39768651-39768670 None:intergenic 25.0%
! ACTCAAATTATCATATACCT+CGG - chr4.1:39766068-39766087 None:intergenic 25.0%
! ATAAGCTCAAATAAGCTAAT+CGG + chr4.1:39766516-39766535 MS.gene050099:intron 25.0%
! CAAATAATATCAACATTTCC+AGG + chr4.1:39768805-39768824 MS.gene050099:intron 25.0%
! CTCAAGATTTGTAACAAATT+GGG - chr4.1:39767577-39767596 None:intergenic 25.0%
! GAGAGTTTATGTAAATAATC+TGG + chr4.1:39766417-39766436 MS.gene050099:intron 25.0%
! GATTATTTACATAAACTCTC+CGG - chr4.1:39766417-39766436 None:intergenic 25.0%
! GTACATTTCAAAAAGATACA+TGG - chr4.1:39766549-39766568 None:intergenic 25.0%
! TCAAGATTTGTAACAAATTG+GGG - chr4.1:39767576-39767595 None:intergenic 25.0%
! TCTCAAGATTTGTAACAAAT+TGG - chr4.1:39767578-39767597 None:intergenic 25.0%
! TTCCAATTATAAACATTCAC+CGG - chr4.1:39767479-39767498 None:intergenic 25.0%
!! TATGAGAATTTAATTGACTC+CGG + chr4.1:39769281-39769300 MS.gene050099:CDS 25.0%
!! TTTTCCTTTTGTCAATGTAT+AGG + chr4.1:39769142-39769161 MS.gene050099:intron 25.0%
!!! AAATGGATTTTCTTGAAAAC+TGG - chr4.1:39769037-39769056 None:intergenic 25.0%
!!! AGTTTTGATAGGGAAAAAAA+AGG - chr4.1:39769070-39769089 None:intergenic 25.0%
!!! ATTTTTTTAGAAATGTGAGG+TGG + chr4.1:39766584-39766603 MS.gene050099:intron 25.0%
!!! GATATTGATGAAGTTTTGAT+AGG - chr4.1:39769081-39769100 None:intergenic 25.0%
!!! GTTTTGATAGGGAAAAAAAA+GGG - chr4.1:39769069-39769088 None:intergenic 25.0%
!!! TAGACGTATTCATTGTTTTT+TGG + chr4.1:39767871-39767890 MS.gene050099:intron 25.0%
!!! TGATGTTGATTTAAAACTGA+AGG + chr4.1:39766974-39766993 MS.gene050099:intron 25.0%
!!! TGGATTTTTTTAGAAATGTG+AGG + chr4.1:39766581-39766600 MS.gene050099:intron 25.0%
AAAGGTGGAGATGATATAAA+AGG + chr4.1:39767182-39767201 MS.gene050099:CDS 30.0%
AAGATTTGTAACAAATTGGG+GGG - chr4.1:39767574-39767593 None:intergenic 30.0%
AAGTAGTTGTGGAGAAAATT+AGG + chr4.1:39769216-39769235 MS.gene050099:CDS 30.0%
AATAATAGTGGTAGAATCCT+TGG - chr4.1:39768252-39768271 None:intergenic 30.0%
AATGCCTATACATTGACAAA+AGG - chr4.1:39769149-39769168 None:intergenic 30.0%
AGGAATTGATAAAACAGTAG+CGG + chr4.1:39767121-39767140 MS.gene050099:CDS 30.0%
CAAACAAAGAAACAGAGTAT+GGG - chr4.1:39768934-39768953 None:intergenic 30.0%
CAAGATTTGTAACAAATTGG+GGG - chr4.1:39767575-39767594 None:intergenic 30.0%
CTCAAATTATCATATACCTC+GGG - chr4.1:39766067-39766086 None:intergenic 30.0%
GAAAATGAATTAAGGGGAAA+TGG - chr4.1:39765798-39765817 None:intergenic 30.0%
TCAAATTATCATATACCTCG+GGG - chr4.1:39766066-39766085 None:intergenic 30.0%
TCAATATTGCAATGTCTTGA+AGG - chr4.1:39767836-39767855 None:intergenic 30.0%
TCCAATTATAAACATTCACC+GGG - chr4.1:39767478-39767497 None:intergenic 30.0%
TGACTTTGGATTTGCATAAA+TGG + chr4.1:39766202-39766221 MS.gene050099:intron 30.0%
TGCAAGCATCATAATATATG+TGG + chr4.1:39767898-39767917 MS.gene050099:intron 30.0%
TTATATGTGTTGTCTCATAC+TGG + chr4.1:39766139-39766158 MS.gene050099:intron 30.0%
TTCTCTCAAATATTGTCAGA+TGG + chr4.1:39766478-39766497 MS.gene050099:intron 30.0%
! AAATGTACTTCTAGAAAGTG+TGG + chr4.1:39766561-39766580 MS.gene050099:intron 30.0%
! ATTTGACATCTTTTCTTTCC+CGG + chr4.1:39767457-39767476 MS.gene050099:intron 30.0%
! ATTTTGTGCATTTAACTGCT+AGG + chr4.1:39768140-39768159 MS.gene050099:intron 30.0%
! CATACTCTGTTTCTTTGTTT+GGG + chr4.1:39768933-39768952 MS.gene050099:intron 30.0%
! CTTTTATTGCGGAAATCTTT+TGG - chr4.1:39767644-39767663 None:intergenic 30.0%
! GGAGATGATATAAAAGGTAT+TGG + chr4.1:39767188-39767207 MS.gene050099:intron 30.0%
! TTTCTTTGTTTGGGTCAAAA+GGG + chr4.1:39768942-39768961 MS.gene050099:intron 30.0%
! TTTTGTCAATGTATAGGCAT+TGG + chr4.1:39769148-39769167 MS.gene050099:intron 30.0%
!!! AATGTTGTTTTGGATGAGTT+TGG + chr4.1:39766735-39766754 MS.gene050099:CDS 30.0%
!!! TCAACATTTTCAGGTTATTC+TGG + chr4.1:39768896-39768915 MS.gene050099:intron 30.0%
!!! TCTTTTTTTGTTTGAATCGG+TGG + chr4.1:39766931-39766950 MS.gene050099:intron 30.0%
AAACCTACATAGTACATGAC+TGG - chr4.1:39767930-39767949 None:intergenic 35.0%
AAAGGATGAGTTGCAATCTA+GGG + chr4.1:39768286-39768305 MS.gene050099:CDS 35.0%
AAGTTTACGATCCTCAAGTT+CGG - chr4.1:39768435-39768454 None:intergenic 35.0%
AATAAGCTCTCTTTCCAAAC+AGG - chr4.1:39766284-39766303 None:intergenic 35.0%
AATAGAAGGTGAAGTAGTTG+TGG + chr4.1:39769205-39769224 MS.gene050099:CDS 35.0%
AATCCTGTGTCAATCAAGAA+AGG + chr4.1:39767101-39767120 MS.gene050099:CDS 35.0%
ACAATGATTGCTGAAGCAAT+TGG + chr4.1:39767334-39767353 MS.gene050099:CDS 35.0%
AGAAAATTAGGAGTGGTGAA+TGG + chr4.1:39769228-39769247 MS.gene050099:CDS 35.0%
AGTAAAACTAATGACTCAGC+TGG + chr4.1:39767002-39767021 MS.gene050099:CDS 35.0%
ATAAGCTCTCTTTCCAAACA+GGG - chr4.1:39766283-39766302 None:intergenic 35.0%
ATATCATCTCCACCTTTAAC+AGG - chr4.1:39767179-39767198 None:intergenic 35.0%
ATATTGCAATGTCTTGAAGG+AGG - chr4.1:39767833-39767852 None:intergenic 35.0%
ATGATACAACAAAGAACCGA+TGG + chr4.1:39768072-39768091 MS.gene050099:intron 35.0%
ATTCCTTTCTTGATTGACAC+AGG - chr4.1:39767107-39767126 None:intergenic 35.0%
ATTCTCATAAGTGTCTGTCA+TGG - chr4.1:39769270-39769289 None:intergenic 35.0%
CAAGACATTGCAATATTGAC+AGG + chr4.1:39767837-39767856 MS.gene050099:CDS 35.0%
CACTTGCTTTAACCACAAAA+CGG - chr4.1:39765954-39765973 None:intergenic 35.0%
CCAAACAAAGAAACAGAGTA+TGG - chr4.1:39768935-39768954 None:intergenic 35.0%
GAAAACATGGAATGTGACTT+TGG + chr4.1:39766188-39766207 MS.gene050099:intron 35.0%
GAAAATTAGGAGTGGTGAAT+GGG + chr4.1:39769229-39769248 MS.gene050099:CDS 35.0%
GGATCGTAAACTTAGAATTG+AGG + chr4.1:39768442-39768461 MS.gene050099:CDS 35.0%
GTGCTTACAGTGTAAATTTG+TGG - chr4.1:39768786-39768805 None:intergenic 35.0%
TAGCATGACATTACAACAAC+TGG - chr4.1:39767251-39767270 None:intergenic 35.0%
TATTGAGTTACCTGATGCTA+TGG + chr4.1:39766800-39766819 MS.gene050099:CDS 35.0%
TATTGCAATGTCTTGAAGGA+GGG - chr4.1:39767832-39767851 None:intergenic 35.0%
TCCCGGTGAATGTTTATAAT+TGG + chr4.1:39767474-39767493 MS.gene050099:intron 35.0%
TCTATGGATAAAACACCATC+AGG - chr4.1:39767370-39767389 None:intergenic 35.0%
TTCAAGCATCATATAACTCG+TGG + chr4.1:39768857-39768876 MS.gene050099:intron 35.0%
! ACAGAAAGTTAACCGTTTTG+TGG + chr4.1:39765939-39765958 MS.gene050099:CDS 35.0%
! ATCGGTTCTTTGTTGTATCA+TGG - chr4.1:39768073-39768092 None:intergenic 35.0%
! ATGACTTGTAGATTGACAGA+GGG + chr4.1:39767541-39767560 MS.gene050099:intron 35.0%
! CCATACTCTGTTTCTTTGTT+TGG + chr4.1:39768932-39768951 MS.gene050099:intron 35.0%
! GTTTCTTTGTTTGGGTCAAA+AGG + chr4.1:39768941-39768960 MS.gene050099:intron 35.0%
! TATGACTTGTAGATTGACAG+AGG + chr4.1:39767540-39767559 MS.gene050099:intron 35.0%
! TATTGCGGAAATCTTTTGGT+CGG - chr4.1:39767640-39767659 None:intergenic 35.0%
! TCATTGATTGCTCAAAATGC+TGG + chr4.1:39769182-39769201 MS.gene050099:CDS 35.0%
! TTCTTTGTTTGGGTCAAAAG+GGG + chr4.1:39768943-39768962 MS.gene050099:intron 35.0%
! TTGTTTGAATCGGTGGTTTT+TGG + chr4.1:39766938-39766957 MS.gene050099:intron 35.0%
! TTTTGAGCAATCAATGATGC+AGG - chr4.1:39769179-39769198 None:intergenic 35.0%
AACTTGTGTTTCCTTGCCAT+CGG - chr4.1:39768091-39768110 None:intergenic 40.0%
ACACCATCGTTTACAACCTT+AGG - chr4.1:39766765-39766784 None:intergenic 40.0%
AGACAATTTAGCGATCCTCT+CGG - chr4.1:39768372-39768391 None:intergenic 40.0%
AGCACCTCAATTGAACAACT+CGG + chr4.1:39768203-39768222 MS.gene050099:CDS 40.0%
AGGAACAATACCTTCCTCAA+TGG - chr4.1:39768492-39768511 None:intergenic 40.0%
AGGAGCTGACATTGTTCAAA+AGG + chr4.1:39768592-39768611 MS.gene050099:CDS 40.0%
AGTCCTAAGGTTGTAAACGA+TGG + chr4.1:39766759-39766778 MS.gene050099:CDS 40.0%
ATCATTGCCGAAGATATCAC+TGG + chr4.1:39767714-39767733 MS.gene050099:CDS 40.0%
CAAACCGAGTTGTTCAATTG+AGG - chr4.1:39768210-39768229 None:intergenic 40.0%
CAAAGGATGAGTTGCAATCT+AGG + chr4.1:39768285-39768304 MS.gene050099:CDS 40.0%
CTCAATTGAACAACTCGGTT+TGG + chr4.1:39768208-39768227 MS.gene050099:CDS 40.0%
CTGATGCGTTAGTGAAAACA+TGG + chr4.1:39766175-39766194 MS.gene050099:intron 40.0%
CTTCGGCAATGATAAGCAAA+GGG - chr4.1:39767707-39767726 None:intergenic 40.0%
GACAGACTCAGTTTACGATT+CGG + chr4.1:39768337-39768356 MS.gene050099:CDS 40.0%
GCTCAAAATGCTGGAATAGA+AGG + chr4.1:39769191-39769210 MS.gene050099:CDS 40.0%
GGATAAAATGTTGCCCTGTT+TGG + chr4.1:39766267-39766286 MS.gene050099:intron 40.0%
GTTGTGGAGAAAATTAGGAG+TGG + chr4.1:39769221-39769240 MS.gene050099:CDS 40.0%
TAAGGTAAACCAGAATACCC+TGG - chr4.1:39768826-39768845 None:intergenic 40.0%
TATTGCTGATGCTGCATCAA+AGG + chr4.1:39768268-39768287 MS.gene050099:CDS 40.0%
TCTAGTGTTTCCTTGATTGC+TGG - chr4.1:39768554-39768573 None:intergenic 40.0%
TCTTCGGCAATGATAAGCAA+AGG - chr4.1:39767708-39767727 None:intergenic 40.0%
TGATAAAACAGTAGCGGCTT+TGG + chr4.1:39767127-39767146 MS.gene050099:CDS 40.0%
TGCAGCATCAGCAATAATAG+TGG - chr4.1:39768264-39768283 None:intergenic 40.0%
TGCTTATGTTCCAGCAATCA+AGG + chr4.1:39768541-39768560 MS.gene050099:CDS 40.0%
TGTAATTAACCCTCCCATGT+TGG - chr4.1:39765918-39765937 None:intergenic 40.0%
TGTCCAGTCATGTACTATGT+AGG + chr4.1:39767924-39767943 MS.gene050099:intron 40.0%
TTCGGCAATGATAAGCAAAG+GGG - chr4.1:39767706-39767725 None:intergenic 40.0%
TTTCTTCTCTCACCAAATCC+TGG - chr4.1:39767807-39767826 None:intergenic 40.0%
! AGTTTACGATTCGGAGAAAC+TGG + chr4.1:39768346-39768365 MS.gene050099:CDS 40.0%
! CTTAGGCTTTTCGACAACAA+TGG - chr4.1:39769387-39769406 None:intergenic 40.0%
! GAAATGGTTAGTTACCTGGT+TGG - chr4.1:39765782-39765801 None:intergenic 40.0%
! TCAACATTTCCAGGGTATTC+TGG + chr4.1:39768814-39768833 MS.gene050099:intron 40.0%
! TTGAGGTGCTTTCAACAAGA+AGG - chr4.1:39768193-39768212 None:intergenic 40.0%
! TTGTCAGATGGTGTTTCTGT+CGG + chr4.1:39766490-39766509 MS.gene050099:intron 40.0%
!! AGGATTTGGTGAGAGAAGAA+AGG + chr4.1:39767806-39767825 MS.gene050099:CDS 40.0%
!! ATTGAGGAAGGTATTGTTCC+TGG + chr4.1:39768491-39768510 MS.gene050099:CDS 40.0%
!! GCTGGAAATGATGAGTTGAT+TGG + chr4.1:39767310-39767329 MS.gene050099:CDS 40.0%
!! TGAAGGGAGGAATGTTGTTT+TGG + chr4.1:39766725-39766744 MS.gene050099:intron 40.0%
AAACGAGGAGGAAGACTCTA+TGG - chr4.1:39767386-39767405 None:intergenic 45.0%
AACAAGAAGGCCCAAATCAC+TGG - chr4.1:39768180-39768199 None:intergenic 45.0%
AAGAGCTTGAGAAGTTGGCT+AGG + chr4.1:39767153-39767172 MS.gene050099:CDS 45.0%
AAGTTGGCTAGGCCTGTTAA+AGG + chr4.1:39767164-39767183 MS.gene050099:CDS 45.0%
AATTAGGAGTGGTGAATGGG+AGG + chr4.1:39769232-39769251 MS.gene050099:CDS 45.0%
ACAAACGAGTCTTAGCAGGA+AGG + chr4.1:39765888-39765907 MS.gene050099:CDS 45.0%
ACAACAAAGAACCGATGGCA+AGG + chr4.1:39768077-39768096 MS.gene050099:intron 45.0%
ACTAATGACTCAGCTGGAGA+TGG + chr4.1:39767008-39767027 MS.gene050099:CDS 45.0%
AGAACGGAGAATTGAGGTTG+AGG - chr4.1:39765755-39765774 None:intergenic 45.0%
AGATATCACTGGTGAGGCTT+TGG + chr4.1:39767725-39767744 MS.gene050099:CDS 45.0%
AGCCTCACCAGTGATATCTT+CGG - chr4.1:39767724-39767743 None:intergenic 45.0%
AGGATCGCTAAATTGTCTGG+TGG + chr4.1:39768374-39768393 MS.gene050099:CDS 45.0%
AGTGGTAGAATCCTTGGAGA+TGG - chr4.1:39768246-39768265 None:intergenic 45.0%
CACACCTTGTTACCTTTGCA+GGG - chr4.1:39769316-39769335 None:intergenic 45.0%
CATTCCTTCTTCGACTTCGA+CGG - chr4.1:39767416-39767435 None:intergenic 45.0%
CCTGATGCTATGGAAAATGC+TGG + chr4.1:39766810-39766829 MS.gene050099:CDS 45.0%
CTAATGACTCAGCTGGAGAT+GGG + chr4.1:39767009-39767028 MS.gene050099:CDS 45.0%
GAGAGGATCGCTAAATTGTC+TGG + chr4.1:39768371-39768390 MS.gene050099:CDS 45.0%
GATAAACTTGCCGATGCTGT+TGG + chr4.1:39766027-39766046 MS.gene050099:CDS 45.0%
GATTGCTGAAGCAATTGGCA+AGG + chr4.1:39767339-39767358 MS.gene050099:CDS 45.0%
GCTCGGGAAATCATTAAGCT+TGG + chr4.1:39767053-39767072 MS.gene050099:CDS 45.0%
GGCAGCAAAAGTTGCATTCT+TGG - chr4.1:39768471-39768490 None:intergenic 45.0%
TCGAAAAGTGACCATCTCCA+AGG + chr4.1:39768232-39768251 MS.gene050099:CDS 45.0%
TGGCAAGGAAACACAAGTTG+TGG + chr4.1:39768092-39768111 MS.gene050099:intron 45.0%
! ACCAAATCCTGGAGCTTTGA+TGG - chr4.1:39767796-39767815 None:intergenic 45.0%
! ACGCAGCTTGTTCACAACAA+GGG - chr4.1:39767754-39767773 None:intergenic 45.0%
! ACTTTTGCTGCCATTGAGGA+AGG + chr4.1:39768479-39768498 MS.gene050099:CDS 45.0%
! AGGGGAAATGGTTAGTTACC+TGG - chr4.1:39765786-39765805 None:intergenic 45.0%
! ATGCTGGTGCAGCTCTAATT+AGG + chr4.1:39766826-39766845 MS.gene050099:CDS 45.0%
! CCAGCATTTTCCATAGCATC+AGG - chr4.1:39766813-39766832 None:intergenic 45.0%
! CTTTGATGGCAGCCACATTA+AGG - chr4.1:39767782-39767801 None:intergenic 45.0%
! GACTACAACGGCTTCGATTT+TGG + chr4.1:39767031-39767050 MS.gene050099:CDS 45.0%
! TAAAACAGTAGCGGCTTTGG+TGG + chr4.1:39767130-39767149 MS.gene050099:CDS 45.0%
! TGAGTGGTTTTCTCCAACAG+AGG - chr4.1:39767675-39767694 None:intergenic 45.0%
! TGCAACTTTTGCTGCCATTG+AGG + chr4.1:39768475-39768494 MS.gene050099:CDS 45.0%
! TGCTGGTGCAGCTCTAATTA+GGG + chr4.1:39766827-39766846 MS.gene050099:CDS 45.0%
! TGGAGGTATGAACTCTTTGC+TGG + chr4.1:39767434-39767453 MS.gene050099:intron 45.0%
! TGGTTAGTTACCTGGTTGGT+AGG - chr4.1:39765778-39765797 None:intergenic 45.0%
! TTAAACGGTAAGGCCTTGTG+GGG - chr4.1:39769432-39769451 None:intergenic 45.0%
!! GCTGTTGCTTCTATTTCTGC+TGG + chr4.1:39767292-39767311 MS.gene050099:intron 45.0%
!! TTACCTGGTTGGTAGGAGAA+CGG - chr4.1:39765771-39765790 None:intergenic 45.0%
!! ATTTATTTATTTATATAAAG+AGG - chr4.1:39766620-39766639 None:intergenic 5.0%
!! TTTATTTATTTATATAAAGA+GGG - chr4.1:39766619-39766638 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTATTGAA+GGG + chr4.1:39766709-39766728 MS.gene050099:intron 5.0%
!!! TTTTTTTTTTTTTTTATTGA+AGG + chr4.1:39766708-39766727 MS.gene050099:intron 5.0%
ACAACCGTCGAAGTCGAAGA+AGG + chr4.1:39767409-39767428 MS.gene050099:CDS 50.0%
ACGGCGTGAATCTTGGTCAA+AGG - chr4.1:39765989-39766008 None:intergenic 50.0%
AGCTGGAGATGGGACTACAA+CGG + chr4.1:39767019-39767038 MS.gene050099:CDS 50.0%
AGGCACAAACGAGTCTTAGC+AGG + chr4.1:39765884-39765903 MS.gene050099:intron 50.0%
ATTGGCAAGGTTGGACCTGA+TGG + chr4.1:39767352-39767371 MS.gene050099:CDS 50.0%
CAAAGGGGCTCTCAATTGAG+TGG - chr4.1:39767691-39767710 None:intergenic 50.0%
CAATTCCAGCCTGCATAGCA+CGG - chr4.1:39766008-39766027 None:intergenic 50.0%
CACTAGAAGACGCAGATGAG+AGG + chr4.1:39768567-39768586 MS.gene050099:CDS 50.0%
CGAAGTCGAAGAAGGAATGG+AGG + chr4.1:39767417-39767436 MS.gene050099:CDS 50.0%
CGTCGAAGTCGAAGAAGGAA+TGG + chr4.1:39767414-39767433 MS.gene050099:CDS 50.0%
GAGAGTAAGGCCAACAGCAT+CGG - chr4.1:39766040-39766059 None:intergenic 50.0%
GAGTTCCAGGCCAGTGATTT+GGG + chr4.1:39768167-39768186 MS.gene050099:CDS 50.0%
GCACACCTTGTTACCTTTGC+AGG - chr4.1:39769317-39769336 None:intergenic 50.0%
GCCATCAAAGCTCCAGGATT+TGG + chr4.1:39767792-39767811 MS.gene050099:CDS 50.0%
GCTGAAGCAATTGGCAAGGT+TGG + chr4.1:39767343-39767362 MS.gene050099:CDS 50.0%
GCTGCGTGGTATCCTTAATG+TGG + chr4.1:39767767-39767786 MS.gene050099:CDS 50.0%
GGACTTCTCAGTGTGACATC+AGG + chr4.1:39767074-39767093 MS.gene050099:CDS 50.0%
GGAGTTGCAGTCATCAAGGT+CGG + chr4.1:39768395-39768414 MS.gene050099:CDS 50.0%
GGATGAGTTTGGCAGTCCTA+AGG + chr4.1:39766746-39766765 MS.gene050099:CDS 50.0%
GGTAGGAGAACGGAGAATTG+AGG - chr4.1:39765761-39765780 None:intergenic 50.0%
GGTGGAAGAGCTTGAGAAGT+TGG + chr4.1:39767148-39767167 MS.gene050099:CDS 50.0%
TCGACCCTGCAAAGGTAACA+AGG + chr4.1:39769309-39769328 MS.gene050099:CDS 50.0%
TGAGGTTGAGGATAGAGCGT+TGG - chr4.1:39765743-39765762 None:intergenic 50.0%
TGAGTTCCAGGCCAGTGATT+TGG + chr4.1:39768166-39768185 MS.gene050099:CDS 50.0%
TGCCGAAGATATCACTGGTG+AGG + chr4.1:39767719-39767738 MS.gene050099:CDS 50.0%
TGCTACAGAGACCGAACTTG+AGG + chr4.1:39768421-39768440 MS.gene050099:CDS 50.0%
TGGTGGAGTTGCAGTCATCA+AGG + chr4.1:39768391-39768410 MS.gene050099:CDS 50.0%
TGTCGAAAAGCCTAAGCCCA+GGG + chr4.1:39769391-39769410 MS.gene050099:CDS 50.0%
TTCGACAACAATGGCCTGTG+TGG - chr4.1:39769378-39769397 None:intergenic 50.0%
TTCGACGGTTGTCTCAAACG+AGG - chr4.1:39767401-39767420 None:intergenic 50.0%
TTGGCTAGGCCTGTTAAAGG+TGG + chr4.1:39767167-39767186 MS.gene050099:CDS 50.0%
TTGTCGAAAAGCCTAAGCCC+AGG + chr4.1:39769390-39769409 MS.gene050099:CDS 50.0%
! AGAATGCTGCTTCAGTGGCT+GGG + chr4.1:39769342-39769361 MS.gene050099:CDS 50.0%
! CACGCAGCTTGTTCACAACA+AGG - chr4.1:39767755-39767774 None:intergenic 50.0%
! CTTGTTGTGAACAAGCTGCG+TGG + chr4.1:39767753-39767772 MS.gene050099:CDS 50.0%
! TCTGCAGAATGCTGCTTCAG+TGG + chr4.1:39769337-39769356 MS.gene050099:CDS 50.0%
! TGGTGCAGCTCTAATTAGGG+AGG + chr4.1:39766830-39766849 MS.gene050099:CDS 50.0%
!! GAAGGTATTGTTCCTGGAGG+AGG + chr4.1:39768497-39768516 MS.gene050099:CDS 50.0%
!! GAGGAAGGTATTGTTCCTGG+AGG + chr4.1:39768494-39768513 MS.gene050099:CDS 50.0%
!! GATGCTGTTGGCCTTACTCT+CGG + chr4.1:39766039-39766058 MS.gene050099:CDS 50.0%
!!! AACGGCTTCGATTTTGGCTC+GGG + chr4.1:39767037-39767056 MS.gene050099:CDS 50.0%
!!! CAACGGCTTCGATTTTGGCT+CGG + chr4.1:39767036-39767055 MS.gene050099:CDS 50.0%
ACCAATGCAGTACCTCCTCC+AGG - chr4.1:39768512-39768531 None:intergenic 55.0%
AGATTCACGCCGTGCTATGC+AGG + chr4.1:39765996-39766015 MS.gene050099:CDS 55.0%
AGCAGGAAGGCGAACCAACA+TGG + chr4.1:39765901-39765920 MS.gene050099:CDS 55.0%
AGGAGTGGTGAATGGGAGGT+TGG + chr4.1:39769236-39769255 MS.gene050099:CDS 55.0%
ATTCGGAGAAACTGGCCGAG+AGG + chr4.1:39768354-39768373 MS.gene050099:CDS 55.0%
CTTTGCAGGGTCGATGACTC+CGG - chr4.1:39769303-39769322 None:intergenic 55.0%
GAAGACGCAGATGAGAGGCT+AGG + chr4.1:39768572-39768591 MS.gene050099:CDS 55.0%
GAAGGCGAACCAACATGGGA+GGG + chr4.1:39765906-39765925 MS.gene050099:CDS 55.0%
GACGGTTGTCTCAAACGAGG+AGG - chr4.1:39767398-39767417 None:intergenic 55.0%
GCAGGAAGGCGAACCAACAT+GGG + chr4.1:39765902-39765921 MS.gene050099:CDS 55.0%
GCATAGCACGGCGTGAATCT+TGG - chr4.1:39765996-39766015 None:intergenic 55.0%
TCTCCGTTCTCCTACCAACC+AGG + chr4.1:39765765-39765784 MS.gene050099:CDS 55.0%
! CAGAATGCTGCTTCAGTGGC+TGG + chr4.1:39769341-39769360 MS.gene050099:CDS 55.0%
! TGGGATGGTCTTGACCACAC+AGG + chr4.1:39769361-39769380 MS.gene050099:CDS 55.0%
!! ACTGCTAGGTGCTGAGTTCC+AGG + chr4.1:39768154-39768173 MS.gene050099:intron 55.0%
!! TCCTGGAGGAGGTACTGCAT+TGG + chr4.1:39768508-39768527 MS.gene050099:CDS 55.0%
CGGAGTCATCGACCCTGCAA+AGG + chr4.1:39769301-39769320 MS.gene050099:CDS 60.0%
GAAAAGCCTAAGCCCAGGGC+AGG + chr4.1:39769395-39769414 MS.gene050099:CDS 60.0%
GAAGGCCCAAATCACTGGCC+TGG - chr4.1:39768175-39768194 None:intergenic 60.0%
GGAAGGCGAACCAACATGGG+AGG + chr4.1:39765905-39765924 MS.gene050099:CDS 60.0%
GTGGCTGCCATCAAAGCTCC+AGG + chr4.1:39767786-39767805 MS.gene050099:CDS 60.0%
TACCTCGGGGTCCGAGAGTA+AGG - chr4.1:39766053-39766072 None:intergenic 60.0%
! TGCTGCTTCAGTGGCTGGGA+TGG + chr4.1:39769346-39769365 MS.gene050099:CDS 60.0%
TCACGCCGTGCTATGCAGGC+TGG + chr4.1:39766000-39766019 MS.gene050099:CDS 65.0%
GCAGCAGCCACACCTGCCCT+GGG - chr4.1:39769410-39769429 None:intergenic 70.0%
GCCACACCTGCCCTGGGCTT+AGG - chr4.1:39769404-39769423 None:intergenic 70.0%
GCCTAAGCCCAGGGCAGGTG+TGG + chr4.1:39769400-39769419 MS.gene050099:CDS 70.0%
GGCCTTACTCTCGGACCCCG+AGG + chr4.1:39766048-39766067 MS.gene050099:CDS 70.0%
GGTGTGGCTGCTGCCCCACA+AGG + chr4.1:39769416-39769435 MS.gene050099:CDS 70.0%
GGCAGCAGCCACACCTGCCC+TGG - chr4.1:39769411-39769430 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 39765730 39769451 39765730 ID=MS.gene050099
chr4.1 mRNA 39765730 39769451 39765730 ID=MS.gene050099.t1;Parent=MS.gene050099
chr4.1 exon 39765730 39765786 39765730 ID=MS.gene050099.t1.exon1;Parent=MS.gene050099.t1
chr4.1 CDS 39765730 39765786 39765730 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
chr4.1 exon 39765886 39766069 39765886 ID=MS.gene050099.t1.exon2;Parent=MS.gene050099.t1
chr4.1 CDS 39765886 39766069 39765886 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
chr4.1 exon 39766730 39766851 39766730 ID=MS.gene050099.t1.exon3;Parent=MS.gene050099.t1
chr4.1 CDS 39766730 39766851 39766730 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
chr4.1 exon 39766996 39767203 39766996 ID=MS.gene050099.t1.exon4;Parent=MS.gene050099.t1
chr4.1 CDS 39766996 39767203 39766996 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
chr4.1 exon 39767293 39767438 39767293 ID=MS.gene050099.t1.exon5;Parent=MS.gene050099.t1
chr4.1 CDS 39767293 39767438 39767293 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
chr4.1 exon 39767552 39767858 39767552 ID=MS.gene050099.t1.exon6;Parent=MS.gene050099.t1
chr4.1 CDS 39767552 39767858 39767552 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
chr4.1 exon 39768162 39768613 39768162 ID=MS.gene050099.t1.exon7;Parent=MS.gene050099.t1
chr4.1 CDS 39768162 39768613 39768162 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
chr4.1 exon 39769164 39769451 39769164 ID=MS.gene050099.t1.exon8;Parent=MS.gene050099.t1
chr4.1 CDS 39769164 39769451 39769164 ID=cds.MS.gene050099.t1;Parent=MS.gene050099.t1
Gene Sequence

>MS.gene050099

ATGGCTTCAACCAACGCTCTATCCTCAACCTCAATTCTCCGTTCTCCTACCAACCAGGTAACTAACCATTTCCCCTTAATTCATTTTCATTTAATTTCTCCCAAAAGCACTTAATTACAAAATCGATTATAATTAATTTTCGATTATTTGTTTCAGGCACAAACGAGTCTTAGCAGGAAGGCGAACCAACATGGGAGGGTTAATTACAGACAGAAAGTTAACCGTTTTGTGGTTAAAGCAAGTGCTAAAGATATTGCCTTTGACCAAGATTCACGCCGTGCTATGCAGGCTGGAATTGATAAACTTGCCGATGCTGTTGGCCTTACTCTCGGACCCCGAGGTATATGATAATTTGAGTAATTGAATGTAATTATATGTGTTGGTGTCGTGTTCGAGTAATTGAGTGTAATTATATGTGTTGTCTCATACTGGACATGTCTTCAATCTGATGCGTTAGTGAAAACATGGAATGTGACTTTGGATTTGCATAAATGGAAAAACTCAAATTTGTGTGTATGAATCTGAATGTATTTTTTCGGATAAAATGTTGCCCTGTTTGGAAAGAGAGCTTATTTTGTAGATTATAGCACATAAGCCGCTTATGAATAAGCTATTTATGTGACACAAGATAAAATTGAGTCAAATTGTTTTCGTCTAATCTATAAGTTGTTTTAATAAACTATACCGGAGAGTTTATGTAAATAATCTGGAAATAGCTCATGAACATTTCATTAGCTGTTTTTGTAAGTTCTCTCAAATATTGTCAGATGGTGTTTCTGTCGGTAGATAAGCTCAAATAAGCTAATCGGAACAGACCCATGTATCTTTTTGAAATGTACTTCTAGAAAGTGTGGATTTTTTTAGAAATGTGAGGTGGAAAATGTTTCCCTCTTTATATAAATAAATAAATAAATTGTCTTTTTATTCTGAAATTTTAGTATTATTGCTATTATATGGGTAAGCAATGTGAAACATTGTTTTTTTTTTTTTTTTATTGAAGGGAGGAATGTTGTTTTGGATGAGTTTGGCAGTCCTAAGGTTGTAAACGATGGTGTGACAATTGCAAGAGCTATTGAGTTACCTGATGCTATGGAAAATGCTGGTGCAGCTCTAATTAGGGAGGTATGTGATAATTGATAAATAAAGAGTTTAAATTATTTTGTTGCTTTTGAAGATTTTTGTGTATATGGTTTTTGATTATTCTTTTTTTGTTTGAATCGGTGGTTTTTGGTTACTTATGACGATGATGTTGATTTAAAACTGAAGGTTGCTAGTAAAACTAATGACTCAGCTGGAGATGGGACTACAACGGCTTCGATTTTGGCTCGGGAAATCATTAAGCTTGGACTTCTCAGTGTGACATCAGGTGCTAATCCTGTGTCAATCAAGAAAGGAATTGATAAAACAGTAGCGGCTTTGGTGGAAGAGCTTGAGAAGTTGGCTAGGCCTGTTAAAGGTGGAGATGATATAAAAGGTATTGGTATTACTATAAGAACATTTGATTTGGTTTCATTTTGACCAGTTGTTGTAATGTCATGCTAATGAGTTTTGATGTTGTATCAGCTGTTGCTTCTATTTCTGCTGGAAATGATGAGTTGATTGGAACAATGATTGCTGAAGCAATTGGCAAGGTTGGACCTGATGGTGTTTTATCCATAGAGTCTTCCTCCTCGTTTGAGACAACCGTCGAAGTCGAAGAAGGAATGGAGGTATGAACTCTTTGCTGGATTTGACATCTTTTCTTTCCCGGTGAATGTTTATAATTGGAAGAAAAGAGTTTTAAAGCTTCCACTTCTAATTTTATTGCTTTTATGACTTGTAGATTGACAGAGGGTATATCTCCCCCCAATTTGTTACAAATCTTGAGAAATCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATTACCGACCAAAAGATTTCCGCAATAAAAGATATAATTCCTCTGTTGGAGAAAACCACTCAATTGAGAGCCCCTTTGCTTATCATTGCCGAAGATATCACTGGTGAGGCTTTGGCTACCCTTGTTGTGAACAAGCTGCGTGGTATCCTTAATGTGGCTGCCATCAAAGCTCCAGGATTTGGTGAGAGAAGAAAGGCCCTCCTTCAAGACATTGCAATATTGACAGGTATGTTAAATTTAGACGTATTCATTGTTTTTTGGATACTGCAAGCATCATAATATATGTGGTGATGTCCAGTCATGTACTATGTAGGTTTTTACTGTTTAATCATGTTAAATAATGGTTAATCCTGTTCAAAAATTTAGTTTATGTAAAAGAAGATATAGTCATTGTTTAGTTACTTTTGATATTTGTTTCAACTGTTTAAGTTATTCTGCCATGATACAACAAAGAACCGATGGCAAGGAAACACAAGTTGTGGAATTATCATAGACATTTCTTTGACAATTTTGTGCATTTAACTGCTAGGTGCTGAGTTCCAGGCCAGTGATTTGGGCCTTCTTGTTGAAAGCACCTCAATTGAACAACTCGGTTTGGCTCGAAAAGTGACCATCTCCAAGGATTCTACCACTATTATTGCTGATGCTGCATCAAAGGATGAGTTGCAATCTAGGGTTGCACAACTGAAGAAAGAGTTGTTTGAGACAGACTCAGTTTACGATTCGGAGAAACTGGCCGAGAGGATCGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTCGGTGCTGCTACAGAGACCGAACTTGAGGATCGTAAACTTAGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTTCCTGGAGGAGGTACTGCATTGGTTCATCTCTCTGCTTATGTTCCAGCAATCAAGGAAACACTAGAAGACGCAGATGAGAGGCTAGGAGCTGACATTGTTCAAAAGGTGAGAATGCTGATCAAATTTGCACATATTTTGACCAGTATGCTATGATTATTGTTTTCATGTCATGTTCCATGATTACAATTTACAACAATCTGAAAAAACACAAATTTACACTATAAGCACAAATAATATCAACATTTTTCTTTACAATTTACAACAATCTGAAAAACCACAAATTTACACTGTAAGCACAAATAATATCAACATTTCCAGGGTATTCTGGTTTACCTTATAAATTAATGTTTCAAGCATCATATAACTCGTGGAAAAAATAAAGTAATATCAACATTTTCAGGTTATTCTGGTATATTGTTTATCCCATACTCTGTTTCTTTGTTTGGGTCAAAAGGGGAAAGAATAATTTTAAGATTTTATGAGTGTCACATTAGCAAAACAATTAAGTCAAAATGACTGTTATTTCCAGTTTTCAAGAAAATCCATTTATTTTTCATCCCTTTTTTTTCCCTATCAAAACTTCATCAATATCTGATATTTGATACGACTAAAAAATATTACTGATGAGTTGTTTTTTCCTTTTGTCAATGTATAGGCATTGGTAGCACCTGCATCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTAGTTGTGGAGAAAATTAGGAGTGGTGAATGGGAGGTTGGTTACAATGCCATGACAGACACTTATGAGAATTTAATTGACTCCGGAGTCATCGACCCTGCAAAGGTAACAAGGTGTGCTCTGCAGAATGCTGCTTCAGTGGCTGGGATGGTCTTGACCACACAGGCCATTGTTGTCGAAAAGCCTAAGCCCAGGGCAGGTGTGGCTGCTGCCCCACAAGGCCTTACCGTTTAA

Protein sequence

>MS.gene050099.t1

MASTNALSSTSILRSPTNQAQTSLSRKANQHGRVNYRQKVNRFVVKASAKDIAFDQDSRRAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLSVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVASISAGNDELIGTMIAEAIGKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNLEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVESTSIEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKETLEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRSGEWEVGYNAMTDTYENLIDSGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPRAGVAAAPQGLTV