Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25421.t1 | XP_013445767.1 | 94.1 | 187 | 7 | 1 | 12 | 194 | 81 | 267 | 2.50E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25421.t1 | Q9M9S3 | 71.4 | 182 | 52 | 0 | 13 | 194 | 82 | 263 | 1.9e-77 | 290.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25421.t1 | A0A072TSF9 | 94.1 | 187 | 7 | 1 | 12 | 194 | 81 | 267 | 1.8e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25421.t1 | TF | Whirly |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050646 | MS.gene25421 | -0.802816 | 4.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25421.t1 | MTR_8g468570 | 93.048 | 187 | 9 | 1 | 12 | 194 | 81 | 267 | 1.60e-122 | 347 |
| MS.gene25421.t1 | MTR_5g038560 | 62.500 | 184 | 64 | 2 | 12 | 194 | 82 | 261 | 4.61e-80 | 239 |
| MS.gene25421.t1 | MTR_7g116270 | 36.842 | 190 | 111 | 3 | 8 | 194 | 43 | 226 | 2.26e-47 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25421.t1 | AT1G14410 | 71.429 | 182 | 52 | 0 | 13 | 194 | 82 | 263 | 1.62e-99 | 288 |
| MS.gene25421.t1 | AT2G02740 | 69.945 | 183 | 54 | 1 | 13 | 194 | 86 | 268 | 2.14e-94 | 276 |
| MS.gene25421.t1 | AT1G71260 | 39.572 | 187 | 107 | 2 | 12 | 194 | 54 | 238 | 3.98e-50 | 162 |
Find 55 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGGAATACTCCGGATTTA+TGG | 0.234925 | 8.2:-40520180 | None:intergenic |
| AGCAGCCTTCCCTTTGTAAA+TGG | 0.248567 | 8.2:-40516797 | None:intergenic |
| TATATCATGCCATACCTTCT+AGG | 0.331839 | 8.2:+40520137 | MS.gene25421:CDS |
| CAGGGGCATACAAGATATCT+AGG | 0.351989 | 8.2:+40517599 | MS.gene25421:CDS |
| ACCACCGGAATTCGCGCCTT+TGG | 0.357831 | 8.2:+40516837 | MS.gene25421:CDS |
| TGTATCTAAAGCAGAGTTAT+CGG | 0.376960 | 8.2:+40519474 | MS.gene25421:CDS |
| CAAAGGTATGCCAACCTAGA+AGG | 0.381461 | 8.2:-40520151 | None:intergenic |
| ACATCCAAAGGCGCGAATTC+CGG | 0.385464 | 8.2:-40516841 | None:intergenic |
| GATAACTCTGCTTTAGATAC+AGG | 0.397032 | 8.2:-40519472 | None:intergenic |
| AACAATGCTAATCCAAGATA+TGG | 0.413675 | 8.2:+40520209 | MS.gene25421:CDS |
| CTTCAGTTTGCGCCCTCTGT+TGG | 0.417534 | 8.2:+40517637 | MS.gene25421:CDS |
| CATGTTATCTGTGGATGAAA+TGG | 0.422705 | 8.2:+40518273 | MS.gene25421:CDS |
| TCGTAGTCTCCACCATATCT+TGG | 0.423400 | 8.2:-40520221 | None:intergenic |
| TTGGTCCACGTCAATATGAT+TGG | 0.450450 | 8.2:+40517656 | MS.gene25421:CDS |
| GGCGCGAATTCCGGTGGTCT+AGG | 0.461203 | 8.2:-40516832 | None:intergenic |
| CTTTGCAAACTCCATAAATC+CGG | 0.480571 | 8.2:+40520169 | MS.gene25421:CDS |
| ATATGATTGGAATAGAAAAC+AGG | 0.497404 | 8.2:+40517669 | MS.gene25421:CDS |
| AAACCAGAACCATCCGGAAA+AGG | 0.498684 | 8.2:-40518925 | None:intergenic |
| AGACTACGAATGGAACAGAT+AGG | 0.502738 | 8.2:+40520235 | MS.gene25421:CDS |
| TTGGTCATTCCATTTACAAA+GGG | 0.507287 | 8.2:+40516788 | MS.gene25421:CDS |
| AACTACCTTCCGCCTTTGAA+AGG | 0.515428 | 8.2:-40518346 | None:intergenic |
| GTGTGATTAGCCTTGGTGCA+AGG | 0.517803 | 8.2:+40518299 | MS.gene25421:CDS |
| ATGTTATCTGTGGATGAAAT+GGG | 0.526542 | 8.2:+40518274 | MS.gene25421:CDS |
| CGGATTTATGGAGTTTGCAA+AGG | 0.530016 | 8.2:-40520168 | None:intergenic |
| TTGCCACCTAGGGTTTATGT+TGG | 0.531185 | 8.2:+40516769 | MS.gene25421:intron |
| GTATGCCAACCTAGAAGGTA+TGG | 0.531319 | 8.2:-40520146 | None:intergenic |
| CACTATCACTCCTAGACCAC+CGG | 0.536143 | 8.2:+40516822 | MS.gene25421:CDS |
| GTTGGTCATTCCATTTACAA+AGG | 0.542041 | 8.2:+40516787 | MS.gene25421:CDS |
| TGTGATTAGCCTTGGTGCAA+GGG | 0.548806 | 8.2:+40518300 | MS.gene25421:CDS |
| TTCGCCGCTGCGGAATACTC+CGG | 0.560202 | 8.2:-40520188 | None:intergenic |
| TCATGCCATACCTTCTAGGT+TGG | 0.568540 | 8.2:+40520141 | MS.gene25421:CDS |
| TCATTCCATTTACAAAGGGA+AGG | 0.568592 | 8.2:+40516792 | MS.gene25421:CDS |
| TGATGAAGGCAAAGTCAGAA+AGG | 0.570422 | 8.2:+40518888 | MS.gene25421:CDS |
| ACTATGGATAATGAAATTGT+TGG | 0.577127 | 8.2:+40516651 | None:intergenic |
| CTATTCCAATCATATTGACG+TGG | 0.581031 | 8.2:-40517661 | None:intergenic |
| AATTGTTGGTGAAAGGCACT+AGG | 0.581985 | 8.2:+40516665 | MS.gene25421:CDS |
| GACTACGAATGGAACAGATA+GGG | 0.588595 | 8.2:+40520236 | MS.gene25421:CDS |
| ATTAGCATTGTTCGCCGCTG+CGG | 0.595298 | 8.2:-40520198 | None:intergenic |
| TCAAGACAAAACTGCGAACG+TGG | 0.600551 | 8.2:+40519432 | MS.gene25421:CDS |
| AATGCTAATCCAAGATATGG+TGG | 0.607036 | 8.2:+40520212 | MS.gene25421:CDS |
| ATGGGAAGTGTGATTAGCCT+TGG | 0.609938 | 8.2:+40518292 | MS.gene25421:CDS |
| ATGATCCTTTCAAAGGCGGA+AGG | 0.610678 | 8.2:+40518341 | MS.gene25421:CDS |
| TTTCATGATCCTTTCAAAGG+CGG | 0.614878 | 8.2:+40518337 | MS.gene25421:CDS |
| AGGGGCATACAAGATATCTA+GGG | 0.628813 | 8.2:+40517600 | MS.gene25421:CDS |
| ATAATGAAATTGTTGGTGAA+AGG | 0.629096 | 8.2:+40516658 | None:intergenic |
| ACGCTTATACTTACATCCAA+AGG | 0.634632 | 8.2:-40516853 | None:intergenic |
| TCCAAAGGCGCGAATTCCGG+TGG | 0.638065 | 8.2:-40516838 | None:intergenic |
| TATTGACGTGGACCAACAGA+GGG | 0.638400 | 8.2:-40517649 | None:intergenic |
| ATAACTCTGCTTTAGATACA+GGG | 0.647998 | 8.2:-40519471 | None:intergenic |
| GCAGCTGTTCATGTTATCTG+TGG | 0.648047 | 8.2:+40518264 | MS.gene25421:intron |
| GATATGGTGGAGACTACGAA+TGG | 0.656703 | 8.2:+40520225 | MS.gene25421:CDS |
| ATATTGACGTGGACCAACAG+AGG | 0.661885 | 8.2:-40517650 | None:intergenic |
| GCATACAAGATATCTAGGGA+TGG | 0.666950 | 8.2:+40517604 | MS.gene25421:CDS |
| CACAAGACTCCCTTGCACCA+AGG | 0.667591 | 8.2:-40518309 | None:intergenic |
| AAATCCGGAGTATTCCGCAG+CGG | 0.752636 | 8.2:+40520184 | MS.gene25421:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTGTAATTAATTAATT+AGG | - | chr8.2:40519218-40519237 | None:intergenic | 10.0% |
| !! | AAATGAAATATATCTAGATT+CGG | - | chr8.2:40518756-40518775 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr8.2:40517317-40517336 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr8.2:40517318-40517337 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr8.2:40517381-40517400 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr8.2:40517382-40517401 | None:intergenic | 15.0% |
| !!! | TGTTTGTATTTTGTAATTTA+CGG | + | chr8.2:40517699-40517718 | MS.gene25421:intron | 15.0% |
| !!! | TTTATTATGGCATTTTTTAA+AGG | + | chr8.2:40519406-40519425 | MS.gene25421:intron | 15.0% |
| !! | AAAAGCCAAAAATATTAATC+AGG | - | chr8.2:40520108-40520127 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr8.2:40517357-40517376 | None:intergenic | 20.0% |
| !! | AGAATTAAAATACTATGTGA+TGG | + | chr8.2:40517836-40517855 | MS.gene25421:intron | 20.0% |
| !! | CGAAATACAAAAAAAAAAAG+TGG | - | chr8.2:40518088-40518107 | None:intergenic | 20.0% |
| !! | TGATGCAAAAATTGAAAATA+AGG | - | chr8.2:40518986-40519005 | None:intergenic | 20.0% |
| !! | TGATTATGATATTCTTTGTA+TGG | + | chr8.2:40518171-40518190 | MS.gene25421:intron | 20.0% |
| !! | TTGAAAGATGATATAGATTA+TGG | - | chr8.2:40519304-40519323 | None:intergenic | 20.0% |
| !!! | AATTTTGATCCTTTTCAAAT+TGG | - | chr8.2:40518681-40518700 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr8.2:40517380-40517399 | None:intergenic | 20.0% |
| !!! | AGAATTGAATGTTTTTAATG+TGG | + | chr8.2:40517553-40517572 | MS.gene25421:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr8.2:40517248-40517267 | None:intergenic | 20.0% |
| !!! | GACGTATGATTATTTATTTT+GGG | + | chr8.2:40517480-40517499 | MS.gene25421:intron | 20.0% |
| !!! | GTTTGTATTTTGTAATTTAC+GGG | + | chr8.2:40517700-40517719 | MS.gene25421:intron | 20.0% |
| !!! | TCATTTTATGTTTGTTGTAT+GGG | + | chr8.2:40518770-40518789 | MS.gene25421:intron | 20.0% |
| !!! | TGACGTATGATTATTTATTT+TGG | + | chr8.2:40517479-40517498 | MS.gene25421:intron | 20.0% |
| !!! | TTCAACCTGATTAATATTTT+TGG | + | chr8.2:40520100-40520119 | MS.gene25421:intron | 20.0% |
| !!! | TTCATTTTATGTTTGTTGTA+TGG | + | chr8.2:40518769-40518788 | MS.gene25421:intron | 20.0% |
| ! | AAAAATGCCATAATAAAGTC+AGG | - | chr8.2:40519403-40519422 | None:intergenic | 25.0% |
| ! | AAGTTCTTATATGATCTAAC+AGG | + | chr8.2:40517747-40517766 | MS.gene25421:intron | 25.0% |
| ! | AATCCCATTACAAAACAATT+AGG | - | chr8.2:40518385-40518404 | None:intergenic | 25.0% |
| ! | AGCAGATATTGCATAAAAAT+AGG | - | chr8.2:40519331-40519350 | None:intergenic | 25.0% |
| ! | ATATGATTGGAATAGAAAAC+AGG | + | chr8.2:40517669-40517688 | MS.gene25421:CDS | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr8.2:40517358-40517377 | None:intergenic | 25.0% |
| ! | GAACTATTAAGTGTTAATCT+TGG | + | chr8.2:40517875-40517894 | MS.gene25421:intron | 25.0% |
| ! | TACTAAGAGTTGTCAAATAA+CGG | + | chr8.2:40519873-40519892 | MS.gene25421:intron | 25.0% |
| ! | TGTATTTATGATGACAACTT+AGG | - | chr8.2:40519259-40519278 | None:intergenic | 25.0% |
| ! | TTGTACAAAATAGCATATCA+TGG | - | chr8.2:40517997-40518016 | None:intergenic | 25.0% |
| !! | AAATACTATGTGATGGAATT+TGG | + | chr8.2:40517843-40517862 | MS.gene25421:intron | 25.0% |
| !! | AATACTATGTGATGGAATTT+GGG | + | chr8.2:40517844-40517863 | MS.gene25421:intron | 25.0% |
| !! | ACTGCATAAAAAGACATTTT+CGG | - | chr8.2:40518869-40518888 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr8.2:40517271-40517290 | None:intergenic | 25.0% |
| !! | TTTTATTCAATGTCCATATG+TGG | + | chr8.2:40518700-40518719 | MS.gene25421:intron | 25.0% |
| !!! | ACTTCCTAATTGTTTTGTAA+TGG | + | chr8.2:40518378-40518397 | MS.gene25421:intron | 25.0% |
| !!! | CTTCCTAATTGTTTTGTAAT+GGG | + | chr8.2:40518379-40518398 | MS.gene25421:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr8.2:40517249-40517268 | None:intergenic | 25.0% |
| !!! | GGTTTTGATGTTATAAATCA+TGG | + | chr8.2:40518811-40518830 | MS.gene25421:intron | 25.0% |
| !!! | TATTCTTTGTATGGTTTTGT+TGG | + | chr8.2:40518180-40518199 | MS.gene25421:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr8.2:40517270-40517289 | None:intergenic | 25.0% |
| !!! | TTTTTTCATGATCCTTTCAA+AGG | + | chr8.2:40518334-40518353 | MS.gene25421:CDS | 25.0% |
| !!! | TTTTTTCCAGTGTTGTTTAA+TGG | + | chr8.2:40517921-40517940 | MS.gene25421:intron | 25.0% |
| AAACAATGTCAAACTCTATC+AGG | - | chr8.2:40518142-40518161 | None:intergenic | 30.0% | |
| AACAATGCTAATCCAAGATA+TGG | + | chr8.2:40520209-40520228 | MS.gene25421:CDS | 30.0% | |
| AATACAGTGTTGTCAATTAG+CGG | + | chr8.2:40519795-40519814 | MS.gene25421:intron | 30.0% | |
| ACATTGCAATTAGAAATCAG+AGG | - | chr8.2:40519529-40519548 | None:intergenic | 30.0% | |
| AGAAAATGGGTCAATTATTC+CGG | - | chr8.2:40517235-40517254 | None:intergenic | 30.0% | |
| AGCACATATTTGATAAACCA+CGG | + | chr8.2:40517101-40517120 | MS.gene25421:intron | 30.0% | |
| AGTGAATGAATAAACATGAC+AGG | - | chr8.2:40519999-40520018 | None:intergenic | 30.0% | |
| ATGAAGAAAGAACATTACTG+AGG | - | chr8.2:40518960-40518979 | None:intergenic | 30.0% | |
| ATGTTATCTGTGGATGAAAT+GGG | + | chr8.2:40518274-40518293 | MS.gene25421:CDS | 30.0% | |
| ATTGACTAAATCGCGTATAA+TGG | - | chr8.2:40517058-40517077 | None:intergenic | 30.0% | |
| TAAAATGTGAGTTCATCATC+TGG | + | chr8.2:40518230-40518249 | MS.gene25421:intron | 30.0% | |
| TCGGAATTTCCAATTTGAAA+AGG | + | chr8.2:40518669-40518688 | MS.gene25421:intron | 30.0% | |
| TCTGTATGAACTGACATATA+TGG | - | chr8.2:40518551-40518570 | None:intergenic | 30.0% | |
| TGATTCAGTTCTGTACAAAA+AGG | + | chr8.2:40519140-40519159 | MS.gene25421:intron | 30.0% | |
| TGCAGTAAAAATCTAAGCAA+TGG | - | chr8.2:40518429-40518448 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr8.2:40517373-40517392 | None:intergenic | 30.0% | |
| TTGGTCATTCCATTTACAAA+GGG | + | chr8.2:40516788-40516807 | MS.gene25421:CDS | 30.0% | |
| TTGTACAGAACTGAATCAAT+CGG | - | chr8.2:40519138-40519157 | None:intergenic | 30.0% | |
| TTGTACCAAATTGCGTATAA+TGG | - | chr8.2:40517132-40517151 | None:intergenic | 30.0% | |
| TTGTACTAAATCGCGTAAAA+TGG | - | chr8.2:40516974-40516993 | None:intergenic | 30.0% | |
| TTGTTCCATTATACGCAATT+TGG | + | chr8.2:40517124-40517143 | MS.gene25421:intron | 30.0% | |
| ! | ATAACTCTGCTTTAGATACA+GGG | - | chr8.2:40519474-40519493 | None:intergenic | 30.0% |
| ! | GTTTTTAATGTGGAACGTTT+TGG | + | chr8.2:40517563-40517582 | MS.gene25421:intron | 30.0% |
| ! | TGTATCTAAAGCAGAGTTAT+CGG | + | chr8.2:40519474-40519493 | MS.gene25421:CDS | 30.0% |
| ! | TTTCTGAAAACTTACGTCAT+GGG | + | chr8.2:40517777-40517796 | MS.gene25421:intron | 30.0% |
| ! | TTTGGTGAATTTTGTAGTCA+GGG | + | chr8.2:40517581-40517600 | MS.gene25421:intron | 30.0% |
| ! | TTTTGGTGAATTTTGTAGTC+AGG | + | chr8.2:40517580-40517599 | MS.gene25421:intron | 30.0% |
| !! | TACAAAGTGTTGTCAATTTG+CGG | + | chr8.2:40516989-40517008 | MS.gene25421:intron | 30.0% |
| !! | TTTTCTGAAAACTTACGTCA+TGG | + | chr8.2:40517776-40517795 | MS.gene25421:intron | 30.0% |
| !!! | TTTTATGTTTGTTGTATGGG+TGG | + | chr8.2:40518773-40518792 | MS.gene25421:intron | 30.0% |
| AAAAAGAAACCAGAACCATC+CGG | - | chr8.2:40518934-40518953 | None:intergenic | 35.0% | |
| AAAAAGACATGTACCTAGTG+TGG | - | chr8.2:40519712-40519731 | None:intergenic | 35.0% | |
| AATGCTAATCCAAGATATGG+TGG | + | chr8.2:40520212-40520231 | MS.gene25421:CDS | 35.0% | |
| ACATAGTAGTGCTTCAACAA+AGG | + | chr8.2:40520025-40520044 | MS.gene25421:intron | 35.0% | |
| ACGCGATTTAGTACAAATTG+CGG | + | chr8.2:40516905-40516924 | MS.gene25421:intron | 35.0% | |
| ACGCTTATACTTACATCCAA+AGG | - | chr8.2:40516856-40516875 | None:intergenic | 35.0% | |
| ACTGTTCAATCAAGATCTCA+CGG | + | chr8.2:40518632-40518651 | MS.gene25421:intron | 35.0% | |
| AGGCACTAGGAATTTGTAAA+GGG | + | chr8.2:40516678-40516697 | MS.gene25421:intron | 35.0% | |
| ATGTCAGTTCATACAGATCT+GGG | + | chr8.2:40518554-40518573 | MS.gene25421:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr8.2:40517417-40517436 | MS.gene25421:intron | 35.0% | |
| CATGTTATCTGTGGATGAAA+TGG | + | chr8.2:40518273-40518292 | MS.gene25421:CDS | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr8.2:40517416-40517435 | MS.gene25421:intron | 35.0% | |
| CTATTCCAATCATATTGACG+TGG | - | chr8.2:40517664-40517683 | None:intergenic | 35.0% | |
| CTTTGCAAACTCCATAAATC+CGG | + | chr8.2:40520169-40520188 | MS.gene25421:CDS | 35.0% | |
| GAAAATGGGTCAATTATTCC+GGG | - | chr8.2:40517234-40517253 | None:intergenic | 35.0% | |
| GTACTGAAATGTATAGACAC+TGG | + | chr8.2:40519162-40519181 | MS.gene25421:intron | 35.0% | |
| GTGATGCTCTTATAGTTCAA+TGG | + | chr8.2:40519564-40519583 | MS.gene25421:intron | 35.0% | |
| GTTGGTCATTCCATTTACAA+AGG | + | chr8.2:40516787-40516806 | MS.gene25421:CDS | 35.0% | |
| GTTTGTCTAATGCTCTAACT+TGG | + | chr8.2:40516709-40516728 | MS.gene25421:intron | 35.0% | |
| TACGCGATTTAGTCAATTTG+CGG | + | chr8.2:40517061-40517080 | MS.gene25421:intron | 35.0% | |
| TATATCATGCCATACCTTCT+AGG | + | chr8.2:40520137-40520156 | MS.gene25421:CDS | 35.0% | |
| TATGTCAGTTCATACAGATC+TGG | + | chr8.2:40518553-40518572 | MS.gene25421:intron | 35.0% | |
| TATTTCGCTATTGACAACAC+TGG | + | chr8.2:40518101-40518120 | MS.gene25421:intron | 35.0% | |
| TCATTCCATTTACAAAGGGA+AGG | + | chr8.2:40516792-40516811 | MS.gene25421:CDS | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr8.2:40517403-40517422 | MS.gene25421:intron | 35.0% | |
| TGCAATTAGAAATCAGAGGT+AGG | - | chr8.2:40519525-40519544 | None:intergenic | 35.0% | |
| TTATATGATCTAACAGGTGC+TGG | + | chr8.2:40517753-40517772 | MS.gene25421:intron | 35.0% | |
| TTGATTGAACAGTCCAAATG+TGG | - | chr8.2:40518625-40518644 | None:intergenic | 35.0% | |
| TTGTCAATTTGCGGTTATAG+TGG | + | chr8.2:40516998-40517017 | MS.gene25421:intron | 35.0% | |
| TTTCATGATCCTTTCAAAGG+CGG | + | chr8.2:40518337-40518356 | MS.gene25421:CDS | 35.0% | |
| ! | AAGGCACTAGGAATTTGTAA+AGG | + | chr8.2:40516677-40516696 | MS.gene25421:intron | 35.0% |
| ! | ATTGCCTCTTTTTCTATGAG+AGG | + | chr8.2:40518455-40518474 | MS.gene25421:intron | 35.0% |
| ! | CAATGGAATTTGCTTGACAA+TGG | - | chr8.2:40519684-40519703 | None:intergenic | 35.0% |
| ! | GATAACTCTGCTTTAGATAC+AGG | - | chr8.2:40519475-40519494 | None:intergenic | 35.0% |
| ! | GTCTTTTTATGCAGTGATGA+AGG | + | chr8.2:40518874-40518893 | MS.gene25421:intron | 35.0% |
| ! | TTGCCTCTTTTTCTATGAGA+GGG | + | chr8.2:40518456-40518475 | MS.gene25421:intron | 35.0% |
| ! | TTGGTGAATTTTGTAGTCAG+GGG | + | chr8.2:40517582-40517601 | MS.gene25421:intron | 35.0% |
| ! | TTTGAAGATTGAGCCTTTTC+CGG | + | chr8.2:40518912-40518931 | MS.gene25421:CDS | 35.0% |
| !! | ACTATAAGAGCATCACATCA+TGG | - | chr8.2:40519560-40519579 | None:intergenic | 35.0% |
| !! | CAAACTCTATCAGGTTTTGT+TGG | - | chr8.2:40518133-40518152 | None:intergenic | 35.0% |
| !! | TCCTTTCCATATTCAAGTTG+CGG | + | chr8.2:40519021-40519040 | MS.gene25421:intron | 35.0% |
| !! | TTTCCAGTGTTGTTTAATGG+CGG | + | chr8.2:40517924-40517943 | MS.gene25421:intron | 35.0% |
| !!! | TATTTTGGGTTTGATTGTGC+TGG | + | chr8.2:40517494-40517513 | MS.gene25421:intron | 35.0% |
| AACACATAGTCAGCCACATA+TGG | - | chr8.2:40518716-40518735 | None:intergenic | 40.0% | |
| ACAACACTGAATAGCTCAAC+AGG | + | chr8.2:40519958-40519977 | MS.gene25421:intron | 40.0% | |
| AGTACAAATTGCGGCTATAG+TGG | + | chr8.2:40516914-40516933 | MS.gene25421:intron | 40.0% | |
| ATAGTGCCGCAACTTGAATA+TGG | - | chr8.2:40519030-40519049 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr8.2:40517419-40517438 | None:intergenic | 40.0% | |
| CGGATTTATGGAGTTTGCAA+AGG | - | chr8.2:40520171-40520190 | None:intergenic | 40.0% | |
| CTATTCAGTGTTGTCGATCA+CGG | - | chr8.2:40519952-40519971 | None:intergenic | 40.0% | |
| CTCGAGTCCTGACTTTATTA+TGG | + | chr8.2:40519393-40519412 | MS.gene25421:intron | 40.0% | |
| GAATGACCAACATAAACCCT+AGG | - | chr8.2:40516778-40516797 | None:intergenic | 40.0% | |
| GCATACAAGATATCTAGGGA+TGG | + | chr8.2:40517604-40517623 | MS.gene25421:CDS | 40.0% | |
| TAATAAAGTCAGGACTCGAG+AGG | - | chr8.2:40519393-40519412 | None:intergenic | 40.0% | |
| TAGTCAATTTGCGGCTATAG+TGG | + | chr8.2:40517070-40517089 | MS.gene25421:intron | 40.0% | |
| TGATGAAGGCAAAGTCAGAA+AGG | + | chr8.2:40518888-40518907 | MS.gene25421:CDS | 40.0% | |
| TGTGTGTGTGTGTGTTTAGT+TGG | + | chr8.2:40516742-40516761 | MS.gene25421:intron | 40.0% | |
| TTGGTCCACGTCAATATGAT+TGG | + | chr8.2:40517656-40517675 | MS.gene25421:CDS | 40.0% | |
| TTGTAATTTACGGGTGACGA+TGG | + | chr8.2:40517709-40517728 | MS.gene25421:intron | 40.0% | |
| TTGTCAATTTGCGGCTATAG+TGG | + | chr8.2:40517156-40517175 | MS.gene25421:intron | 40.0% | |
| ! | AGGGGCATACAAGATATCTA+GGG | + | chr8.2:40517600-40517619 | MS.gene25421:CDS | 40.0% |
| ! | GGTTCTACGCTCAATTTTCA+AGG | + | chr8.2:40519495-40519514 | MS.gene25421:CDS | 40.0% |
| ! | TGCCTCTTTTTCTATGAGAG+GGG | + | chr8.2:40518457-40518476 | MS.gene25421:intron | 40.0% |
| ! | TTTTTCTATGAGAGGGGACA+TGG | + | chr8.2:40518463-40518482 | MS.gene25421:intron | 40.0% |
| !! | AATTGTTGGTGAAAGGCACT+AGG | + | chr8.2:40516665-40516684 | MS.gene25421:CDS | 40.0% |
| AAACCAGAACCATCCGGAAA+AGG | - | chr8.2:40518928-40518947 | None:intergenic | 45.0% | |
| AACTACCTTCCGCCTTTGAA+AGG | - | chr8.2:40518349-40518368 | None:intergenic | 45.0% | |
| AATTAGCGGTCATAGCGTAG+CGG | + | chr8.2:40519809-40519828 | MS.gene25421:intron | 45.0% | |
| AGCAGCCTTCCCTTTGTAAA+TGG | - | chr8.2:40516800-40516819 | None:intergenic | 45.0% | |
| ATATTGACGTGGACCAACAG+AGG | - | chr8.2:40517653-40517672 | None:intergenic | 45.0% | |
| ATGATCCTTTCAAAGGCGGA+AGG | + | chr8.2:40518341-40518360 | MS.gene25421:CDS | 45.0% | |
| ATGGGTCAATTATTCCGGGA+CGG | - | chr8.2:40517230-40517249 | None:intergenic | 45.0% | |
| CACGGTCTAGATATCTAGCT+CGG | + | chr8.2:40518650-40518669 | MS.gene25421:intron | 45.0% | |
| CGATCACGGATCGCAAAAAA+TGG | - | chr8.2:40519938-40519957 | None:intergenic | 45.0% | |
| CGCGTAAAATGGAACAATCG+CGG | - | chr8.2:40516963-40516982 | None:intergenic | 45.0% | |
| GCAGCTGTTCATGTTATCTG+TGG | + | chr8.2:40518264-40518283 | MS.gene25421:intron | 45.0% | |
| GCCGCAACTTGAATATGGAA+AGG | - | chr8.2:40519025-40519044 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr8.2:40517421-40517440 | MS.gene25421:intron | 45.0% | |
| GTATGCCAACCTAGAAGGTA+TGG | - | chr8.2:40520149-40520168 | None:intergenic | 45.0% | |
| GTCCCCTCTCATAGAAAAAG+AGG | - | chr8.2:40518462-40518481 | None:intergenic | 45.0% | |
| TACCTAGTGTGGTCAGACAA+TGG | - | chr8.2:40519701-40519720 | None:intergenic | 45.0% | |
| TATTGACGTGGACCAACAGA+GGG | - | chr8.2:40517652-40517671 | None:intergenic | 45.0% | |
| TCAAAACCTGTCCTCACATG+TGG | - | chr8.2:40518799-40518818 | None:intergenic | 45.0% | |
| TCAAGACAAAACTGCGAACG+TGG | + | chr8.2:40519432-40519451 | MS.gene25421:CDS | 45.0% | |
| TCACGGATCGCAAAAAATGG+TGG | - | chr8.2:40519935-40519954 | None:intergenic | 45.0% | |
| TCATGCCATACCTTCTAGGT+TGG | + | chr8.2:40520141-40520160 | MS.gene25421:CDS | 45.0% | |
| TCGTAGTCTCCACCATATCT+TGG | - | chr8.2:40520224-40520243 | None:intergenic | 45.0% | |
| TGACCAACATAAACCCTAGG+TGG | - | chr8.2:40516775-40516794 | None:intergenic | 45.0% | |
| TGCGGAATACTCCGGATTTA+TGG | - | chr8.2:40520183-40520202 | None:intergenic | 45.0% | |
| TTCCATTGTCTGACCACACT+AGG | + | chr8.2:40519696-40519715 | MS.gene25421:intron | 45.0% | |
| TTGCCACCTAGGGTTTATGT+TGG | + | chr8.2:40516769-40516788 | MS.gene25421:intron | 45.0% | |
| ! | AAGATTGAGCCTTTTCCGGA+TGG | + | chr8.2:40518916-40518935 | MS.gene25421:CDS | 45.0% |
| ! | CAAAGGTATGCCAACCTAGA+AGG | - | chr8.2:40520154-40520173 | None:intergenic | 45.0% |
| ! | CAGGGGCATACAAGATATCT+AGG | + | chr8.2:40517599-40517618 | MS.gene25421:CDS | 45.0% |
| ! | GATATGGTGGAGACTACGAA+TGG | + | chr8.2:40520225-40520244 | MS.gene25421:CDS | 45.0% |
| ! | TGCGTATAATGGAACAACCG+TGG | - | chr8.2:40517121-40517140 | None:intergenic | 45.0% |
| ! | TTTTGTTGGAGCTACGAGGT+TGG | + | chr8.2:40518194-40518213 | MS.gene25421:intron | 45.0% |
| !! | AGCATTGATGCGTTGCATAG+CGG | + | chr8.2:40518050-40518069 | MS.gene25421:intron | 45.0% |
| !! | ATGGGAAGTGTGATTAGCCT+TGG | + | chr8.2:40518292-40518311 | MS.gene25421:CDS | 45.0% |
| !! | TGTGATTAGCCTTGGTGCAA+GGG | + | chr8.2:40518300-40518319 | MS.gene25421:CDS | 45.0% |
| !!! | ATGGTTTTGTTGGAGCTACG+AGG | + | chr8.2:40518190-40518209 | MS.gene25421:intron | 45.0% |
| AGCAAATACTACCTCCGTCC+CGG | - | chr8.2:40517438-40517457 | None:intergenic | 50.0% | |
| AGTTGGAGCTTTGCCACCTA+GGG | + | chr8.2:40516759-40516778 | MS.gene25421:intron | 50.0% | |
| ATTAGCATTGTTCGCCGCTG+CGG | - | chr8.2:40520201-40520220 | None:intergenic | 50.0% | |
| CACTATCACTCCTAGACCAC+CGG | + | chr8.2:40516822-40516841 | MS.gene25421:CDS | 50.0% | |
| GTCAATTATTCCGGGACGGA+GGG | - | chr8.2:40517226-40517245 | None:intergenic | 50.0% | |
| TAGTTGGAGCTTTGCCACCT+AGG | + | chr8.2:40516758-40516777 | MS.gene25421:intron | 50.0% | |
| ! | AAATCCGGAGTATTCCGCAG+CGG | + | chr8.2:40520184-40520203 | MS.gene25421:CDS | 50.0% |
| ! | ACATCCAAAGGCGCGAATTC+CGG | - | chr8.2:40516844-40516863 | None:intergenic | 50.0% |
| !! | GTGTGATTAGCCTTGGTGCA+AGG | + | chr8.2:40518299-40518318 | MS.gene25421:CDS | 50.0% |
| AACTAGTACTCCCTCCGTCC+CGG | + | chr8.2:40517213-40517232 | MS.gene25421:intron | 55.0% | |
| CACAAGACTCCCTTGCACCA+AGG | - | chr8.2:40518312-40518331 | None:intergenic | 55.0% | |
| CTTCAGTTTGCGCCCTCTGT+TGG | + | chr8.2:40517637-40517656 | MS.gene25421:CDS | 55.0% | |
| GCGCCGCCATTAAACAACAC+TGG | - | chr8.2:40517930-40517949 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr8.2:40517424-40517443 | MS.gene25421:intron | 55.0% | |
| GGTCAATTATTCCGGGACGG+AGG | - | chr8.2:40517227-40517246 | None:intergenic | 55.0% | |
| TGCACGCAGTCAGCCACATT+TGG | + | chr8.2:40518609-40518628 | MS.gene25421:intron | 55.0% | |
| TGTATGGGTGGCCACATGTG+AGG | + | chr8.2:40518785-40518804 | MS.gene25421:intron | 55.0% | |
| ! | GAGCCTTTTCCGGATGGTTC+TGG | + | chr8.2:40518922-40518941 | MS.gene25421:CDS | 55.0% |
| ACCACCGGAATTCGCGCCTT+TGG | + | chr8.2:40516837-40516856 | MS.gene25421:CDS | 60.0% | |
| GCTGACTGCGTGCAGTCATG+GGG | - | chr8.2:40518603-40518622 | None:intergenic | 60.0% | |
| GGCTGACTGCGTGCAGTCAT+GGG | - | chr8.2:40518604-40518623 | None:intergenic | 60.0% | |
| TGGCTGACTGCGTGCAGTCA+TGG | - | chr8.2:40518605-40518624 | None:intergenic | 60.0% | |
| TTCGCCGCTGCGGAATACTC+CGG | - | chr8.2:40520191-40520210 | None:intergenic | 60.0% | |
| ! | TCCAAAGGCGCGAATTCCGG+TGG | - | chr8.2:40516841-40516860 | None:intergenic | 60.0% |
| GGCGCGAATTCCGGTGGTCT+AGG | - | chr8.2:40516835-40516854 | None:intergenic | 65.0% | |
| GGGTGGCCACATGTGAGGAC+AGG | + | chr8.2:40518790-40518809 | MS.gene25421:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 40516661 | 40520256 | 40516661 | ID=MS.gene25421 |
| chr8.2 | mRNA | 40516661 | 40520256 | 40516661 | ID=MS.gene25421.t1;Parent=MS.gene25421 |
| chr8.2 | exon | 40516661 | 40516692 | 40516661 | ID=MS.gene25421.t1.exon1;Parent=MS.gene25421.t1 |
| chr8.2 | CDS | 40516661 | 40516692 | 40516661 | ID=cds.MS.gene25421.t1;Parent=MS.gene25421.t1 |
| chr8.2 | exon | 40516780 | 40516861 | 40516780 | ID=MS.gene25421.t1.exon2;Parent=MS.gene25421.t1 |
| chr8.2 | CDS | 40516780 | 40516861 | 40516780 | ID=cds.MS.gene25421.t1;Parent=MS.gene25421.t1 |
| chr8.2 | exon | 40517598 | 40517690 | 40517598 | ID=MS.gene25421.t1.exon3;Parent=MS.gene25421.t1 |
| chr8.2 | CDS | 40517598 | 40517690 | 40517598 | ID=cds.MS.gene25421.t1;Parent=MS.gene25421.t1 |
| chr8.2 | exon | 40518268 | 40518362 | 40518268 | ID=MS.gene25421.t1.exon4;Parent=MS.gene25421.t1 |
| chr8.2 | CDS | 40518268 | 40518362 | 40518268 | ID=cds.MS.gene25421.t1;Parent=MS.gene25421.t1 |
| chr8.2 | exon | 40518888 | 40518961 | 40518888 | ID=MS.gene25421.t1.exon5;Parent=MS.gene25421.t1 |
| chr8.2 | CDS | 40518888 | 40518961 | 40518888 | ID=cds.MS.gene25421.t1;Parent=MS.gene25421.t1 |
| chr8.2 | exon | 40519428 | 40519516 | 40519428 | ID=MS.gene25421.t1.exon6;Parent=MS.gene25421.t1 |
| chr8.2 | CDS | 40519428 | 40519516 | 40519428 | ID=cds.MS.gene25421.t1;Parent=MS.gene25421.t1 |
| chr8.2 | exon | 40520137 | 40520256 | 40520137 | ID=MS.gene25421.t1.exon7;Parent=MS.gene25421.t1 |
| chr8.2 | CDS | 40520137 | 40520256 | 40520137 | ID=cds.MS.gene25421.t1;Parent=MS.gene25421.t1 |
| Gene Sequence |
| Protein sequence |
