Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25637.t1 | XP_013450306.1 | 98.1 | 1313 | 25 | 0 | 1 | 1313 | 58 | 1370 | 0.00E+00 | 2581.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25637.t1 | Q921M3 | 22.3 | 968 | 586 | 32 | 376 | 1293 | 357 | 1208 | 2.2e-36 | 156.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25637.t1 | G8A1A5 | 98.1 | 1313 | 25 | 0 | 1 | 1313 | 58 | 1370 | 0.0e+00 | 2581.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051209 | MS.gene25637 | 0.817704 | 2.87E-52 | -1.69E-46 |
MS.gene05686 | MS.gene25637 | 0.802433 | 5.62E-49 | -1.69E-46 |
MS.gene060933 | MS.gene25637 | 0.804448 | 2.15E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25637.t1 | MTR_7g107350 | 98.096 | 1313 | 25 | 0 | 1 | 1313 | 58 | 1370 | 0.0 | 2659 |
MS.gene25637.t1 | MTR_7g107350 | 98.244 | 1196 | 21 | 0 | 118 | 1313 | 1 | 1196 | 0.0 | 2424 |
MS.gene25637.t1 | MTR_7g107350 | 98.033 | 1169 | 23 | 0 | 1 | 1169 | 58 | 1226 | 0.0 | 2370 |
MS.gene25637.t1 | MTR_7g107350 | 98.070 | 1140 | 22 | 0 | 1 | 1140 | 58 | 1197 | 0.0 | 2310 |
MS.gene25637.t1 | MTR_4g115500 | 21.058 | 926 | 547 | 35 | 402 | 1276 | 410 | 1202 | 2.91e-25 | 114 |
MS.gene25637.t1 | MTR_4g115810 | 20.933 | 922 | 553 | 33 | 402 | 1276 | 410 | 1202 | 9.55e-25 | 112 |
MS.gene25637.t1 | MTR_8g089380 | 22.921 | 493 | 284 | 15 | 384 | 864 | 321 | 729 | 1.30e-23 | 108 |
MS.gene25637.t1 | MTR_1g115525 | 24.364 | 275 | 161 | 11 | 390 | 661 | 389 | 619 | 1.01e-14 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25637.t1 | AT3G11960 | 62.246 | 1327 | 472 | 15 | 1 | 1313 | 68 | 1379 | 0.0 | 1620 |
MS.gene25637.t1 | AT3G11960 | 62.246 | 1327 | 472 | 15 | 1 | 1313 | 68 | 1379 | 0.0 | 1620 |
MS.gene25637.t1 | AT3G11960 | 61.643 | 1327 | 466 | 16 | 1 | 1313 | 68 | 1365 | 0.0 | 1591 |
MS.gene25637.t1 | AT3G11960 | 58.727 | 1335 | 456 | 16 | 1 | 1313 | 68 | 1329 | 0.0 | 1508 |
MS.gene25637.t1 | AT3G55220 | 21.532 | 483 | 280 | 16 | 402 | 868 | 399 | 798 | 1.09e-23 | 109 |
MS.gene25637.t1 | AT3G55200 | 21.532 | 483 | 280 | 16 | 402 | 868 | 399 | 798 | 1.09e-23 | 109 |
MS.gene25637.t1 | AT3G55200 | 21.532 | 483 | 280 | 16 | 402 | 868 | 399 | 798 | 1.09e-23 | 109 |
MS.gene25637.t1 | AT3G55200 | 21.532 | 483 | 280 | 16 | 402 | 868 | 399 | 798 | 1.09e-23 | 109 |
MS.gene25637.t1 | AT4G21100 | 22.664 | 578 | 342 | 20 | 384 | 945 | 321 | 809 | 1.42e-23 | 108 |
MS.gene25637.t1 | AT4G05420 | 22.840 | 486 | 285 | 13 | 384 | 860 | 300 | 704 | 4.26e-23 | 107 |
MS.gene25637.t1 | AT4G05420 | 22.840 | 486 | 285 | 13 | 384 | 860 | 321 | 725 | 5.26e-23 | 107 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51728 | gene | 5501 | 19740 | 5501 | ID=MS.gene25637 |
51728 | mRNA | 5501 | 19740 | 5501 | ID=MS.gene25637.t1;Parent=MS.gene25637 |
51728 | exon | 19606 | 19740 | 19606 | ID=MS.gene25637.t1.exon1;Parent=MS.gene25637.t1 |
51728 | CDS | 19606 | 19740 | 19606 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 18714 | 18793 | 18714 | ID=MS.gene25637.t1.exon2;Parent=MS.gene25637.t1 |
51728 | CDS | 18714 | 18793 | 18714 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 18425 | 18508 | 18425 | ID=MS.gene25637.t1.exon3;Parent=MS.gene25637.t1 |
51728 | CDS | 18425 | 18508 | 18425 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 17473 | 17563 | 17473 | ID=MS.gene25637.t1.exon4;Parent=MS.gene25637.t1 |
51728 | CDS | 17473 | 17563 | 17473 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 16963 | 17123 | 16963 | ID=MS.gene25637.t1.exon5;Parent=MS.gene25637.t1 |
51728 | CDS | 16963 | 17123 | 16963 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 14880 | 16818 | 14880 | ID=MS.gene25637.t1.exon6;Parent=MS.gene25637.t1 |
51728 | CDS | 14880 | 16818 | 14880 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 14198 | 14508 | 14198 | ID=MS.gene25637.t1.exon7;Parent=MS.gene25637.t1 |
51728 | CDS | 14198 | 14508 | 14198 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 12659 | 12980 | 12659 | ID=MS.gene25637.t1.exon8;Parent=MS.gene25637.t1 |
51728 | CDS | 12659 | 12980 | 12659 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 12361 | 12516 | 12361 | ID=MS.gene25637.t1.exon9;Parent=MS.gene25637.t1 |
51728 | CDS | 12361 | 12516 | 12361 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 11846 | 11984 | 11846 | ID=MS.gene25637.t1.exon10;Parent=MS.gene25637.t1 |
51728 | CDS | 11846 | 11984 | 11846 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 9233 | 9315 | 9233 | ID=MS.gene25637.t1.exon11;Parent=MS.gene25637.t1 |
51728 | CDS | 9233 | 9315 | 9233 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 8059 | 8198 | 8059 | ID=MS.gene25637.t1.exon12;Parent=MS.gene25637.t1 |
51728 | CDS | 8059 | 8198 | 8059 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 6416 | 6524 | 6416 | ID=MS.gene25637.t1.exon13;Parent=MS.gene25637.t1 |
51728 | CDS | 6416 | 6524 | 6416 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
51728 | exon | 5501 | 5692 | 5501 | ID=MS.gene25637.t1.exon14;Parent=MS.gene25637.t1 |
51728 | CDS | 5501 | 5692 | 5501 | ID=cds.MS.gene25637.t1;Parent=MS.gene25637.t1 |
Gene Sequence |
Protein sequence |