AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25729

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25729.t1 MTR_3g082080 95.000 240 5 1 3 242 2 234 9.22e-163 450
MS.gene25729.t1 MTR_1g116870 74.157 89 23 0 160 248 271 359 2.45e-43 150
MS.gene25729.t1 MTR_5g015720 61.538 91 33 2 160 248 324 414 6.10e-32 121
MS.gene25729.t1 MTR_8g085390 51.685 89 43 0 163 251 28 116 2.79e-28 106
MS.gene25729.t1 MTR_1g056640 55.294 85 37 1 165 248 406 490 6.77e-26 105
MS.gene25729.t1 MTR_5g085580 54.118 85 38 1 165 248 382 466 7.11e-26 105
MS.gene25729.t1 MTR_5g097420 49.425 87 43 1 161 246 26 112 3.33e-24 94.0
MS.gene25729.t1 MTR_8g089400 45.000 100 54 1 152 250 24 123 4.59e-24 94.7
MS.gene25729.t1 MTR_8g089400 45.000 100 54 1 152 250 44 143 1.64e-23 94.0
MS.gene25729.t1 MTR_4g133735 45.833 96 51 1 155 249 18 113 2.45e-23 91.7
MS.gene25729.t1 MTR_8g085440 45.238 84 46 0 165 248 32 115 1.60e-22 89.4
MS.gene25729.t1 MTR_7g111600 48.235 85 42 2 165 248 160 243 3.30e-22 92.4
MS.gene25729.t1 MTR_8g085420 45.679 81 44 0 165 245 32 112 5.10e-22 89.0
MS.gene25729.t1 MTR_7g111600 48.235 85 42 2 165 248 160 243 6.78e-22 92.4
MS.gene25729.t1 MTR_7g111600 48.235 85 42 2 165 248 160 243 1.12e-21 92.0
MS.gene25729.t1 MTR_2g049670 47.126 87 45 1 165 251 158 243 1.34e-21 92.0
MS.gene25729.t1 MTR_4g133730 42.708 96 54 1 155 249 18 113 2.20e-21 86.7
MS.gene25729.t1 MTR_4g109490 50.562 89 43 1 160 248 19 106 2.42e-21 89.4
MS.gene25729.t1 MTR_1g084820 53.846 78 35 1 165 242 420 496 3.26e-21 92.8
MS.gene25729.t1 MTR_3g048280 40.179 112 63 3 140 248 85 195 3.78e-21 88.6
MS.gene25729.t1 MTR_1g084820 53.846 78 35 1 165 242 420 496 3.99e-21 92.4
MS.gene25729.t1 MTR_6g088885 43.820 89 48 1 165 251 369 457 8.23e-21 91.3
MS.gene25729.t1 MTR_8g085400 48.750 80 38 1 165 244 33 109 1.38e-20 84.3
MS.gene25729.t1 MTR_1g022160 46.429 84 45 0 165 248 391 474 1.59e-20 90.5
MS.gene25729.t1 MTR_5g044530 54.167 72 33 0 163 234 20 91 1.71e-20 87.8
MS.gene25729.t1 MTR_8g102340 45.882 85 45 1 165 248 334 418 5.27e-20 89.0
MS.gene25729.t1 MTR_5g091650 44.318 88 47 2 165 251 108 194 7.43e-20 84.7
MS.gene25729.t1 MTR_4g083070 52.778 72 34 0 163 234 19 90 2.37e-19 83.2
MS.gene25729.t1 MTR_4g132280 45.882 85 45 1 165 248 382 466 3.12e-19 86.7
MS.gene25729.t1 MTR_5g091650 44.318 88 47 2 165 251 108 194 4.14e-19 84.3
MS.gene25729.t1 MTR_3g083580 45.882 85 45 1 165 248 362 446 5.39e-19 85.9
MS.gene25729.t1 MTR_8g085720 45.977 87 46 1 163 248 362 448 1.74e-18 84.7
MS.gene25729.t1 MTR_7g053500 42.727 110 58 2 140 248 276 381 1.85e-18 84.0
MS.gene25729.t1 MTR_3g116510 44.186 86 48 0 163 248 235 320 2.19e-18 83.2
MS.gene25729.t1 MTR_7g053500 42.727 110 58 2 140 248 353 458 2.42e-18 84.0
MS.gene25729.t1 MTR_8g012400 42.268 97 51 2 151 246 284 376 2.53e-18 83.6
MS.gene25729.t1 MTR_1g022160 44.828 87 48 0 165 251 391 477 2.68e-18 84.0
MS.gene25729.t1 MTR_8g012400 42.268 97 51 2 151 246 364 456 2.87e-18 84.0
MS.gene25729.t1 MTR_3g116510 44.318 88 49 0 159 246 365 452 4.81e-18 83.2
MS.gene25729.t1 MTR_4g079530 41.860 86 49 1 164 248 36 121 2.37e-17 76.3
MS.gene25729.t1 MTR_1g022160 45.455 77 42 0 165 241 391 467 6.08e-17 80.1
MS.gene25729.t1 MTR_4g079530 38.947 95 57 1 155 248 27 121 8.11e-17 76.3
MS.gene25729.t1 MTR_4g069940 40.659 91 53 1 159 248 369 459 1.16e-16 79.3
MS.gene25729.t1 MTR_7g026340 35.354 99 64 0 148 246 348 446 2.85e-16 77.8
MS.gene25729.t1 MTR_4g083500 36.905 84 53 0 165 248 402 485 8.41e-16 76.6
MS.gene25729.t1 MTR_1g031900 43.529 85 47 1 165 248 361 445 1.17e-15 76.3
MS.gene25729.t1 MTR_1g031900 43.529 85 47 1 165 248 361 445 1.36e-15 76.3
MS.gene25729.t1 MTR_5g078200 40.000 85 50 1 165 248 327 411 5.65e-15 74.3
MS.gene25729.t1 MTR_5g078200 40.000 85 50 1 165 248 360 444 6.82e-15 74.3
MS.gene25729.t1 MTR_2g072500 38.095 84 51 1 165 248 8 90 8.53e-14 65.9
MS.gene25729.t1 MTR_8g088120 46.053 76 39 2 177 251 60 134 1.21e-13 68.6
MS.gene25729.t1 MTR_4g088155 37.209 86 53 1 164 248 372 457 2.23e-13 69.7
MS.gene25729.t1 MTR_3g065460 37.647 85 52 1 165 248 361 445 1.38e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25729.t1 AT1G79480 55.484 155 58 3 97 249 249 394 1.85e-43 151
MS.gene25729.t1 AT1G79480 55.484 155 58 3 97 249 250 395 1.97e-43 151
MS.gene25729.t1 AT5G67460 50.993 151 63 6 107 248 229 377 2.51e-38 137
MS.gene25729.t1 AT5G67460 51.034 145 60 6 107 242 229 371 1.85e-35 130
MS.gene25729.t1 AT4G13600 54.651 86 39 0 163 248 59 144 2.19e-30 113
MS.gene25729.t1 AT2G04910 49.451 91 45 1 160 249 10 100 1.97e-26 99.4
MS.gene25729.t1 AT5G35740 50.575 87 41 2 165 249 30 116 6.16e-24 93.2
MS.gene25729.t1 AT2G04910 50.000 84 41 1 160 242 10 93 1.49e-23 92.4
MS.gene25729.t1 AT1G18650 48.837 86 44 0 163 248 19 104 3.47e-23 93.2
MS.gene25729.t1 AT1G18650 50.000 82 41 0 165 246 21 102 4.87e-23 91.3
MS.gene25729.t1 AT2G30933 44.144 111 59 3 142 251 60 168 6.42e-23 93.6
MS.gene25729.t1 AT5G55180 50.588 85 41 1 165 248 372 456 8.97e-23 96.7
MS.gene25729.t1 AT4G26830 51.765 85 40 1 165 248 371 455 1.79e-22 95.9
MS.gene25729.t1 AT4G26830 51.765 85 40 1 165 248 367 451 1.87e-22 95.9
MS.gene25729.t1 AT4G05430 42.045 88 50 1 165 251 23 110 4.93e-22 89.0
MS.gene25729.t1 AT2G05790 42.105 114 60 2 136 248 360 468 6.12e-22 94.4
MS.gene25729.t1 AT1G11820 48.235 85 43 1 165 248 381 465 6.56e-22 94.7
MS.gene25729.t1 AT4G05430 42.045 88 50 1 165 251 48 135 7.98e-22 89.4
MS.gene25729.t1 AT2G30933 44.118 102 54 3 142 242 60 159 1.87e-21 88.2
MS.gene25729.t1 AT2G30933 44.118 102 54 3 142 242 60 159 1.87e-21 88.2
MS.gene25729.t1 AT1G29380 47.727 88 44 2 165 251 148 234 2.35e-21 90.1
MS.gene25729.t1 AT5G61130 45.349 86 47 0 163 248 19 104 5.80e-21 87.8
MS.gene25729.t1 AT5G56590 45.882 85 45 1 165 248 369 453 5.86e-21 91.7
MS.gene25729.t1 AT1G29380 48.235 85 42 2 165 248 148 231 1.01e-20 89.4
MS.gene25729.t1 AT3G13560 47.126 87 45 1 163 248 360 446 1.68e-20 90.5
MS.gene25729.t1 AT3G13560 47.126 87 45 1 163 248 360 446 1.68e-20 90.5
MS.gene25729.t1 AT3G13560 47.126 87 45 1 163 248 360 446 1.68e-20 90.5
MS.gene25729.t1 AT3G13560 47.126 87 45 1 163 248 360 446 1.68e-20 90.5
MS.gene25729.t1 AT3G13560 47.126 87 45 1 163 248 360 446 1.68e-20 90.5
MS.gene25729.t1 AT4G34480 42.857 84 48 0 165 248 253 336 4.72e-20 88.6
MS.gene25729.t1 AT5G55180 50.633 79 38 1 165 242 372 450 5.21e-20 89.0
MS.gene25729.t1 AT4G34480 42.857 84 48 0 165 248 364 447 6.47e-20 89.0
MS.gene25729.t1 AT5G63225 42.857 84 48 0 165 248 25 108 7.78e-20 82.4
MS.gene25729.t1 AT5G24318 40.698 86 51 0 165 250 233 318 8.77e-20 87.0
MS.gene25729.t1 AT5G08000 48.837 86 44 0 163 248 19 104 1.06e-19 84.3
MS.gene25729.t1 AT1G29380 49.367 79 38 2 165 242 148 225 1.11e-19 85.1
MS.gene25729.t1 AT1G29380 49.367 79 38 2 165 242 148 225 1.11e-19 85.1
MS.gene25729.t1 AT4G29360 45.882 85 45 1 165 248 401 485 1.56e-19 87.8
MS.gene25729.t1 AT4G29360 45.882 85 45 1 165 248 391 475 1.63e-19 87.8
MS.gene25729.t1 AT5G63250 42.697 89 48 1 165 250 42 130 1.67e-19 82.0
MS.gene25729.t1 AT5G08000 48.837 86 44 0 163 248 38 123 1.85e-19 84.0
MS.gene25729.t1 AT5G24318 40.698 86 51 0 165 250 372 457 1.96e-19 87.4
MS.gene25729.t1 AT1G66870 36.111 108 63 2 142 248 8 110 2.60e-19 80.9
MS.gene25729.t1 AT2G01630 42.353 85 48 1 165 248 360 444 2.80e-19 87.0
MS.gene25729.t1 AT1G66870 36.111 108 63 2 142 248 35 137 3.03e-19 81.6
MS.gene25729.t1 AT1G11820 48.101 79 40 1 165 242 381 459 3.39e-19 86.7
MS.gene25729.t1 AT1G69295 50.685 73 35 1 162 234 14 85 3.46e-19 83.6
MS.gene25729.t1 AT2G29735 36.364 121 67 3 131 249 5 117 4.78e-19 80.5
MS.gene25729.t1 AT4G05430 43.038 79 44 1 165 242 48 126 6.46e-19 80.5
MS.gene25729.t1 AT1G09460 47.674 86 43 2 165 250 137 220 7.32e-19 84.7
MS.gene25729.t1 AT1G66855 38.554 83 50 1 165 246 26 108 1.41e-18 79.0
MS.gene25729.t1 AT1G69295 50.000 72 35 1 163 234 19 89 2.48e-18 81.3
MS.gene25729.t1 AT4G09462 37.209 86 54 0 165 250 29 114 2.77e-18 78.2
MS.gene25729.t1 AT5G63230 39.286 84 51 0 165 248 26 109 3.43e-18 78.2
MS.gene25729.t1 AT5G63240 35.849 106 65 1 148 250 23 128 4.03e-18 78.6
MS.gene25729.t1 AT4G09465 31.776 107 73 0 144 250 10 116 7.72e-18 77.4
MS.gene25729.t1 AT4G09467 31.776 107 73 0 144 250 10 116 8.05e-18 77.0
MS.gene25729.t1 AT4G09464 31.776 107 73 0 144 250 10 116 8.05e-18 77.0
MS.gene25729.t1 AT1G66852 41.379 87 45 3 165 248 26 109 9.62e-18 76.6
MS.gene25729.t1 AT4G09466 30.841 107 74 0 144 250 10 116 1.94e-17 76.3
MS.gene25729.t1 AT5G24318 41.250 80 47 0 165 244 372 451 2.63e-17 80.9
MS.gene25729.t1 AT2G01630 43.038 79 44 1 165 242 360 438 3.13e-17 80.9
MS.gene25729.t1 AT2G16230 39.286 84 51 0 165 248 366 449 3.50e-17 80.9
MS.gene25729.t1 AT3G55430 39.024 82 50 0 165 246 366 447 1.37e-16 79.0
MS.gene25729.t1 AT4G09090 30.841 107 74 0 144 250 10 116 1.98e-16 73.6
MS.gene25729.t1 AT1G66250 37.647 85 52 1 165 248 368 452 6.96e-16 77.0
MS.gene25729.t1 AT1G13830 44.444 72 40 0 163 234 33 104 8.34e-16 74.3
MS.gene25729.t1 AT1G13830 44.444 72 40 0 163 234 19 90 9.64e-16 73.9
MS.gene25729.t1 AT4G16165 35.294 85 54 1 165 248 26 110 1.38e-15 71.2
MS.gene25729.t1 AT5G53600 32.692 104 64 2 145 248 14 111 1.58e-15 70.9
MS.gene25729.t1 AT1G26450 44.595 74 40 1 163 236 19 91 1.65e-15 73.2
MS.gene25729.t1 AT3G23770 37.755 98 60 1 152 248 374 471 6.74e-15 73.9
MS.gene25729.t1 AT3G07320 41.860 86 49 1 164 248 370 455 1.60e-14 72.8
MS.gene25729.t1 AT5G53610 40.476 84 49 1 165 248 28 110 3.16e-14 67.4
MS.gene25729.t1 AT2G39640 32.941 85 57 0 163 247 458 542 3.95e-14 72.0
MS.gene25729.t1 AT2G39640 35.366 82 53 0 165 246 359 440 3.13e-13 69.3
MS.gene25729.t1 AT2G43670 35.294 85 54 1 165 249 35 118 4.72e-14 67.4
MS.gene25729.t1 AT2G03505 38.889 72 44 0 163 234 19 90 3.58e-13 64.7
MS.gene25729.t1 AT3G58100 37.079 89 55 1 161 248 37 125 3.86e-13 66.2
MS.gene25729.t1 AT2G03505 38.889 72 44 0 163 234 19 90 4.95e-13 65.9
MS.gene25729.t1 AT2G03505 38.889 72 44 0 163 234 19 90 4.95e-13 65.9
MS.gene25729.t1 AT2G03505 38.889 72 44 0 163 234 19 90 4.95e-13 65.9
MS.gene25729.t1 AT3G58100 37.931 87 53 1 161 246 113 199 5.00e-13 67.4
MS.gene25729.t1 AT2G43660 31.356 118 80 1 133 249 2 119 4.20e-12 62.0
MS.gene25729.t1 AT2G42930 37.209 86 53 1 160 245 35 119 5.61e-12 62.0
MS.gene25729.t1 AT2G43660 29.915 117 75 2 140 249 4 120 2.14e-11 60.1
MS.gene25729.t1 AT4G14080 31.000 100 68 1 150 248 374 473 5.76e-11 62.4

Find 63 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGACTATGCTTGTGGGTC+TGG 0.148531 3.3:+69127473 MS.gene25729:CDS
TGGACTATGCTTGTGGGTCT+GGG 0.289091 3.3:+69127474 MS.gene25729:CDS
TCCATAGCCAGTTGAATTAT+AGG 0.302335 3.3:-69127455 None:intergenic
GATGAGCAATGTTGAATCTA+AGG 0.322497 3.3:-69125856 None:intergenic
GGGTTTGGAACAGGTGAATA+AGG 0.327081 3.3:-69127209 None:intergenic
AGCCCACCTAAAAGTGTTAT+AGG 0.340995 3.3:+69127323 MS.gene25729:CDS
TCAGATTTAGATTCTTCATA+TGG 0.344846 3.3:+69127122 MS.gene25729:CDS
TGTAAATCAGTTCAGCCTAA+TGG 0.349309 3.3:+69127503 MS.gene25729:CDS
CTTATGCATTCAATAGCTAT+TGG 0.355474 3.3:+69127564 MS.gene25729:CDS
GAGTTTCTTCCATGATTTGA+TGG 0.359457 3.3:-69127057 None:intergenic
GGTGGAAGGGGTTGAGAAGA+AGG 0.373189 3.3:-69127149 None:intergenic
AAGAAACTCAAATATCAAAA+TGG 0.376268 3.3:+69127071 MS.gene25729:CDS
AAAACATCATGAGGTGGGTT+TGG 0.378635 3.3:-69127224 None:intergenic
GTAAATCAGTTCAGCCTAAT+GGG 0.395511 3.3:+69127504 MS.gene25729:CDS
AGCCACCACAATATGCTATC+TGG 0.408308 3.3:+69127405 MS.gene25729:CDS
TCCTGATCCTATAATTCAAC+TGG 0.420616 3.3:+69127448 MS.gene25729:CDS
GATGGGCTTGGAGGTGGTGG+CGG 0.424976 3.3:-69127287 None:intergenic
GCCAGTTGAATTATAGGATC+AGG 0.436233 3.3:-69127449 None:intergenic
TTTGCAGATGCTATAAATCA+TGG 0.443939 3.3:+69127014 MS.gene25729:intron
GAATAAGGTGGTAGAGAGGT+AGG 0.451500 3.3:-69127194 None:intergenic
TCATGAGGTGGGTTTGGAAC+AGG 0.452737 3.3:-69127218 None:intergenic
TCCTATAATTCAACTGGCTA+TGG 0.461085 3.3:+69127454 MS.gene25729:CDS
TTTGATGGGCTTGGAGGTGG+TGG 0.461788 3.3:-69127290 None:intergenic
TGGCTATGGACTATGCTTGT+GGG 0.470072 3.3:+69127468 MS.gene25729:CDS
GGTGGTGGTGGATAAACAAT+AGG 0.486021 3.3:-69127368 None:intergenic
GGCTGGAAGCATATCCCATT+AGG 0.500978 3.3:-69127518 None:intergenic
TATTGGCAGAACACTAAGAT+TGG 0.504275 3.3:+69127581 MS.gene25729:CDS
GCATGTGCCAACACTGTGTT+GGG 0.505340 3.3:-69127539 None:intergenic
AGGTGAATAAGGTGGTAGAG+AGG 0.507925 3.3:-69127198 None:intergenic
CTGGCTATGGACTATGCTTG+TGG 0.509897 3.3:+69127467 MS.gene25729:CDS
TCCACTCTATTCCCTTTGTG+TGG 0.511535 3.3:+69125899 MS.gene25729:CDS
GTGCCAACACTGTGTTGGGC+TGG 0.515870 3.3:-69127535 None:intergenic
TTATGACTTGAAGGTGGTGG+TGG 0.522446 3.3:-69127380 None:intergenic
ATTATAGGATCAGGAACTGT+AGG 0.522750 3.3:-69127440 None:intergenic
GGTGGTAGAGAGGTAGGTTG+TGG 0.528352 3.3:-69127188 None:intergenic
GGCAGAACACTAAGATTGGT+GGG 0.533300 3.3:+69127585 MS.gene25729:CDS
TAAGCTCTTGATGAATCCAT+TGG 0.534192 3.3:-69125830 None:intergenic
GAAGCTACTCCATCAAATCA+TGG 0.534607 3.3:+69127048 MS.gene25729:CDS
GGACTATGCTTGTGGGTCTG+GGG 0.539971 3.3:+69127475 MS.gene25729:CDS
TGCATGGTTTACCACACAAA+GGG 0.541460 3.3:-69125910 None:intergenic
GATGCTATAAATCATGGAAG+AGG 0.563923 3.3:+69127020 MS.gene25729:intron
GGTGGCAAGTATACTTGAGG+TGG 0.566837 3.3:-69127347 None:intergenic
TGGCAGAACACTAAGATTGG+TGG 0.568883 3.3:+69127584 MS.gene25729:CDS
CAAGTGAATTGAAAGGTGGA+AGG 0.573973 3.3:-69127163 None:intergenic
AGCATGTGCCAACACTGTGT+TGG 0.585546 3.3:-69127540 None:intergenic
AAGTGAATTGAAAGGTGGAA+GGG 0.615025 3.3:-69127162 None:intergenic
CTTCCAGCCCAACACAGTGT+TGG 0.616634 3.3:+69127532 MS.gene25729:CDS
GCAGAACACTAAGATTGGTG+GGG 0.618966 3.3:+69127586 MS.gene25729:CDS
GAGTGGAAACTAGCATCAAG+AGG 0.620409 3.3:-69125883 None:intergenic
AGTGAATTGAAAGGTGGAAG+GGG 0.620889 3.3:-69127161 None:intergenic
CAGAACACTAAGATTGGTGG+GGG 0.628305 3.3:+69127587 MS.gene25729:CDS
GGTGGTGGATAAACAATAGG+TGG 0.638764 3.3:-69127365 None:intergenic
TTTGGAACAGGTGAATAAGG+TGG 0.645722 3.3:-69127206 None:intergenic
ATAGGTGGCAAGTATACTTG+AGG 0.650538 3.3:-69127350 None:intergenic
ATGCATGGTTTACCACACAA+AGG 0.652538 3.3:-69125911 None:intergenic
GTGGCAAGTATACTTGAGGT+GGG 0.653749 3.3:-69127346 None:intergenic
TGGCGGCGACATTGTAACAG+TGG 0.658796 3.3:-69127270 None:intergenic
CACCAGATAGCATATTGTGG+TGG 0.680993 3.3:-69127407 None:intergenic
ACCACACAAAGGGAATAGAG+TGG 0.683572 3.3:-69125900 None:intergenic
ACACACCAGATAGCATATTG+TGG 0.683997 3.3:-69127410 None:intergenic
TGTGGTGCAAGTGAATTGAA+AGG 0.698579 3.3:-69127170 None:intergenic
GGTGCAAGTGAATTGAAAGG+TGG 0.701271 3.3:-69127167 None:intergenic
ACAATATGCTATCTGGTGTG+TGG 0.720976 3.3:+69127412 MS.gene25729:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATAAATTTATTTTTT+TGG + chr3.3:69128328-69128347 MS.gene25729:intron 0.0%
!! ATAATTATATGATTATTTCA+TGG + chr3.3:69125938-69125957 MS.gene25729:intron 10.0%
!! CTCAAAAAAAAAAAAAAAAA+AGG - chr3.3:69128745-69128764 None:intergenic 10.0%
!! TAATTATATGATTATTTCAT+GGG + chr3.3:69125939-69125958 MS.gene25729:intron 10.0%
!!! CTTTTTTTTTTTTTTTTTTG+AGG + chr3.3:69128743-69128762 MS.gene25729:intron 10.0%
!!! GTAATATTTTGATAAAATTT+GGG + chr3.3:69126036-69126055 MS.gene25729:intron 10.0%
!!! TGTAATATTTTGATAAAATT+TGG + chr3.3:69126035-69126054 MS.gene25729:intron 10.0%
!!! TTTAGTTTTTTATTTAAAAG+AGG - chr3.3:69128922-69128941 None:intergenic 10.0%
!! ATAGATTAGTATATGAAATA+AGG - chr3.3:69126957-69126976 None:intergenic 15.0%
!! TAATGATAAAATTATATGCA+TGG + chr3.3:69128188-69128207 MS.gene25729:intron 15.0%
!! TAGATTAGTATATGAAATAA+GGG - chr3.3:69126956-69126975 None:intergenic 15.0%
!! TTTATCAGCAATTAAAAAAA+AGG - chr3.3:69127954-69127973 None:intergenic 15.0%
!!! ATAAAGGAACTTTTTTTTTT+TGG + chr3.3:69127988-69128007 MS.gene25729:intron 15.0%
!!! GAAAAACATGATTTTTTTTT+TGG - chr3.3:69126174-69126193 None:intergenic 15.0%
!!! GTCTTTTTAATTTAAAACTA+TGG + chr3.3:69129038-69129057 MS.gene25729:intron 15.0%
!! AAGAAACTCAAATATCAAAA+TGG + chr3.3:69127071-69127090 MS.gene25729:CDS 20.0%
!! ACATAATTTGATGTAATCAT+AGG + chr3.3:69127786-69127805 MS.gene25729:intron 20.0%
!! CATACAAATATTATCAAAAC+CGG + chr3.3:69126864-69126883 MS.gene25729:intron 20.0%
!! TACAATTACCAATAAGAATT+GGG + chr3.3:69126240-69126259 MS.gene25729:intron 20.0%
!!! AAATTTTCTCATATGGATAA+AGG + chr3.3:69127972-69127991 MS.gene25729:intron 20.0%
!!! AATGAAGATTTGATTTTTCA+TGG + chr3.3:69126736-69126755 MS.gene25729:intron 20.0%
!!! ATTTTTCATGGAAGATATTA+AGG + chr3.3:69126748-69126767 MS.gene25729:intron 20.0%
!!! CATCACTAAATGATTATTTT+TGG - chr3.3:69127913-69127932 None:intergenic 20.0%
!!! GAATTAAGAAGTATTTACAT+AGG - chr3.3:69126694-69126713 None:intergenic 20.0%
!!! GTTTTAAATTAAAAAGACGA+CGG - chr3.3:69129036-69129055 None:intergenic 20.0%
!!! TTCAACAAATTTTCATCATT+TGG + chr3.3:69127095-69127114 MS.gene25729:CDS 20.0%
!!! TTGGACCATTTATTTTTAAT+CGG - chr3.3:69128588-69128607 None:intergenic 20.0%
!!! TTTTTCATGGAAGATATTAA+GGG + chr3.3:69126749-69126768 MS.gene25729:intron 20.0%
!!! TTTTTTTTTGGTACAACATA+TGG + chr3.3:69128000-69128019 MS.gene25729:intron 20.0%
! AAAATTATATGCATGGACTT+TGG + chr3.3:69128195-69128214 MS.gene25729:intron 25.0%
! AATATGCACCACAAAAAAAA+GGG + chr3.3:69125969-69125988 MS.gene25729:intron 25.0%
! ACACCAGTAAAATATCATTA+AGG - chr3.3:69128069-69128088 None:intergenic 25.0%
! ACTTAACTAACGGTTAAATA+AGG - chr3.3:69128453-69128472 None:intergenic 25.0%
! AGTTGATCTAATAATTACGA+TGG + chr3.3:69128243-69128262 MS.gene25729:intron 25.0%
! ATGTGAAATGACTTAACTAA+CGG - chr3.3:69128463-69128482 None:intergenic 25.0%
! CACCAGTAAAATATCATTAA+GGG - chr3.3:69128068-69128087 None:intergenic 25.0%
! CATATAATTATATGCATGCA+TGG - chr3.3:69125929-69125948 None:intergenic 25.0%
! CATGCAAATTTGATTGATAT+TGG + chr3.3:69126665-69126684 MS.gene25729:intron 25.0%
! GTACAATTACCAATAAGAAT+TGG + chr3.3:69126239-69126258 MS.gene25729:intron 25.0%
! TAACAATTCCCAATTCTTAT+TGG - chr3.3:69126251-69126270 None:intergenic 25.0%
! TAATATGCACCACAAAAAAA+AGG + chr3.3:69125968-69125987 MS.gene25729:intron 25.0%
! TCAGATTTAGATTCTTCATA+TGG + chr3.3:69127122-69127141 MS.gene25729:CDS 25.0%
! TGATAATATTTGTATGGAAG+AGG - chr3.3:69126860-69126879 None:intergenic 25.0%
!! AACCCTTAATGATATTTTAC+TGG + chr3.3:69128063-69128082 MS.gene25729:intron 25.0%
!! CAACAGATCATATTTAAGTT+TGG - chr3.3:69128651-69128670 None:intergenic 25.0%
!! GCTGATAAAATTTTCTCATA+TGG + chr3.3:69127965-69127984 MS.gene25729:intron 25.0%
!! GTTTTGCTTATAATAATGAC+CGG + chr3.3:69126473-69126492 MS.gene25729:intron 25.0%
!! TGATATTTTACTGGTGTATT+TGG + chr3.3:69128072-69128091 MS.gene25729:intron 25.0%
!! TTATTGGTAATTGTACTTTG+AGG - chr3.3:69126235-69126254 None:intergenic 25.0%
!! TTTTTCTATGACCATCTTAT+TGG + chr3.3:69126188-69126207 MS.gene25729:intron 25.0%
!!! ACCATTTATTTTTAATCGGA+CGG - chr3.3:69128584-69128603 None:intergenic 25.0%
!!! CGGTTTTGATAATATTTGTA+TGG - chr3.3:69126866-69126885 None:intergenic 25.0%
!!! GAGTTTTTTTTTTCCTTTCA+TGG + chr3.3:69126539-69126558 MS.gene25729:intron 25.0%
!!! TTTTTTTGTGGTGCATATTA+GGG - chr3.3:69125968-69125987 None:intergenic 25.0%
!!! TTTTTTTTGTGGTGCATATT+AGG - chr3.3:69125969-69125988 None:intergenic 25.0%
AATCAAATCTTCATTCTCCA+TGG - chr3.3:69126731-69126750 None:intergenic 30.0%
ATAATTGACACTTCCAATTC+TGG - chr3.3:69126281-69126300 None:intergenic 30.0%
ATACTATATCCACACAACAA+AGG + chr3.3:69128486-69128505 MS.gene25729:intron 30.0%
ATGCATTCTATGTAGTTACA+AGG - chr3.3:69129010-69129029 None:intergenic 30.0%
CAATATATAACTACTCCCTT+CGG + chr3.3:69126342-69126361 MS.gene25729:intron 30.0%
CCAAATGAAAAGAAATCAAG+TGG - chr3.3:69128518-69128537 None:intergenic 30.0%
CTTATGCATTCAATAGCTAT+TGG + chr3.3:69127564-69127583 MS.gene25729:CDS 30.0%
TAAAAGTGGAAAAGGTTCAT+GGG + chr3.3:69126897-69126916 MS.gene25729:intron 30.0%
TAATATGCACCCAAAAAAGA+AGG - chr3.3:69126927-69126946 None:intergenic 30.0%
TATTGAATGTACCTAGAATG+TGG - chr3.3:69126388-69126407 None:intergenic 30.0%
TTGGTACAACATATGGATAA+AGG + chr3.3:69128007-69128026 MS.gene25729:intron 30.0%
TTTAAATAACCGACAATCGA+TGG - chr3.3:69126514-69126533 None:intergenic 30.0%
TTTGCAGATGCTATAAATCA+TGG + chr3.3:69127014-69127033 MS.gene25729:intron 30.0%
! AAATGGTTATTTCCTGATTC+TGG + chr3.3:69126786-69126805 MS.gene25729:intron 30.0%
! ACTTTAGTGTGTGTAACTTT+TGG + chr3.3:69126987-69127006 MS.gene25729:intron 30.0%
! ATCGATTGTCGGTTATTTAA+AGG + chr3.3:69126513-69126532 MS.gene25729:intron 30.0%
! CCACTTGATTTCTTTTCATT+TGG + chr3.3:69128515-69128534 MS.gene25729:intron 30.0%
! TATCATAAACCATCGATTGT+CGG + chr3.3:69126502-69126521 MS.gene25729:intron 30.0%
! TCGATTGTCGGTTATTTAAA+GGG + chr3.3:69126514-69126533 MS.gene25729:intron 30.0%
! TCTGAGTAAGTTAGCAATTT+TGG - chr3.3:69126312-69126331 None:intergenic 30.0%
! TTCCTTTTTATTGTTTGCCA+TGG + chr3.3:69126711-69126730 MS.gene25729:intron 30.0%
!! AGGATTTTGAGTAGCATAAA+TGG - chr3.3:69126215-69126234 None:intergenic 30.0%
!! GGATTTTGAGTAGCATAAAT+GGG - chr3.3:69126214-69126233 None:intergenic 30.0%
!! GTTATTTTCATCACCATGAA+AGG - chr3.3:69126555-69126574 None:intergenic 30.0%
!! TTTTCTTGGTTTGATTCAAC+TGG - chr3.3:69126139-69126158 None:intergenic 30.0%
!!! TCTTTTTTGGGTGCATATTA+GGG + chr3.3:69126927-69126946 MS.gene25729:intron 30.0%
!!! TTCTTTTTTGGGTGCATATT+AGG + chr3.3:69126926-69126945 MS.gene25729:intron 30.0%
!!! TTTTTTGTGGTGCATATTAG+GGG - chr3.3:69125967-69125986 None:intergenic 30.0%
AAAACCCGAATTCCTAACAT+CGG + chr3.3:69128555-69128574 MS.gene25729:intron 35.0%
AAGTGAATTGAAAGGTGGAA+GGG - chr3.3:69127165-69127184 None:intergenic 35.0%
ACCACAAAGGTAAACAAAGA+TGG - chr3.3:69127674-69127693 None:intergenic 35.0%
AGTCTGTGACTATATGTGTT+CGG + chr3.3:69127713-69127732 MS.gene25729:intron 35.0%
ATAACCTGCGAAATAAATCG+TGG - chr3.3:69129096-69129115 None:intergenic 35.0%
ATTATAGGATCAGGAACTGT+AGG - chr3.3:69127443-69127462 None:intergenic 35.0%
CCACATACACATATTCACAA+CGG + chr3.3:69128829-69128848 MS.gene25729:intron 35.0%
CTATAGCAGGTAAAAGTGAA+GGG - chr3.3:69126007-69126026 None:intergenic 35.0%
CTCCATGGCAAACAATAAAA+AGG - chr3.3:69126716-69126735 None:intergenic 35.0%
GAATCTAGATCGAACAATGT+AGG - chr3.3:69128959-69128978 None:intergenic 35.0%
GAGTTTCTTCCATGATTTGA+TGG - chr3.3:69127060-69127079 None:intergenic 35.0%
GATGAGCAATGTTGAATCTA+AGG - chr3.3:69125859-69125878 None:intergenic 35.0%
GATGCTATAAATCATGGAAG+AGG + chr3.3:69127020-69127039 MS.gene25729:intron 35.0%
GCCGTCCGATTAAAAATAAA+TGG + chr3.3:69128580-69128599 MS.gene25729:intron 35.0%
GGGAAGAAGATAAAGCAAAA+TGG + chr3.3:69126769-69126788 MS.gene25729:intron 35.0%
GTAAAAGTGGAAAAGGTTCA+TGG + chr3.3:69126896-69126915 MS.gene25729:intron 35.0%
GTAAATCAGTTCAGCCTAAT+GGG + chr3.3:69127504-69127523 MS.gene25729:CDS 35.0%
GTAGCATGTAAAAGTGGAAA+AGG + chr3.3:69126889-69126908 MS.gene25729:intron 35.0%
TAACCTGCGAAATAAATCGT+GGG - chr3.3:69129095-69129114 None:intergenic 35.0%
TAAGCAAAACTCCACATTCT+AGG + chr3.3:69126374-69126393 MS.gene25729:intron 35.0%
TATGAGATTCTTACCGATGT+CGG - chr3.3:69127761-69127780 None:intergenic 35.0%
TATTGGCAGAACACTAAGAT+TGG + chr3.3:69127581-69127600 MS.gene25729:CDS 35.0%
TCCATAGCCAGTTGAATTAT+AGG - chr3.3:69127458-69127477 None:intergenic 35.0%
TCCTATAATTCAACTGGCTA+TGG + chr3.3:69127454-69127473 MS.gene25729:CDS 35.0%
TCCTGATCCTATAATTCAAC+TGG + chr3.3:69127448-69127467 MS.gene25729:CDS 35.0%
TGCTTATAATAATGACCGGA+GGG + chr3.3:69126477-69126496 MS.gene25729:intron 35.0%
TGCTTATAATAGTGACCGAA+GGG - chr3.3:69126360-69126379 None:intergenic 35.0%
TGTAAATCAGTTCAGCCTAA+TGG + chr3.3:69127503-69127522 MS.gene25729:CDS 35.0%
TTACAAAAACCTGCTATAGC+AGG - chr3.3:69126020-69126039 None:intergenic 35.0%
TTGCTTATAATAATGACCGG+AGG + chr3.3:69126476-69126495 MS.gene25729:intron 35.0%
TTGCTTATAATAGTGACCGA+AGG - chr3.3:69126361-69126380 None:intergenic 35.0%
TTGTTAAACTCCACCAGAAT+TGG + chr3.3:69126265-69126284 MS.gene25729:intron 35.0%
TTTCACCATATAGTCACCTA+TGG - chr3.3:69127883-69127902 None:intergenic 35.0%
! ACCATCTTTGTTTACCTTTG+TGG + chr3.3:69127670-69127689 MS.gene25729:intron 35.0%
! ATCGAACAATGTAGGTTTTG+AGG - chr3.3:69128951-69128970 None:intergenic 35.0%
! GACATTGTAACAGTGGTTTT+AGG - chr3.3:69127266-69127285 None:intergenic 35.0%
! TTTTTATGACTTGAAGGTGG+TGG - chr3.3:69127386-69127405 None:intergenic 35.0%
!! CTTTTCATTTGGAATCCATC+CGG + chr3.3:69128526-69128545 MS.gene25729:intron 35.0%
!! TTTTCATTTGGAATCCATCC+GGG + chr3.3:69128527-69128546 MS.gene25729:intron 35.0%
!!! GTTTTGTTTTGTTTCGCATC+AGG - chr3.3:69126833-69126852 None:intergenic 35.0%
!!! TTTTGAGGTGCACATTTCAT+TGG + chr3.3:69128758-69128777 MS.gene25729:intron 35.0%
AAAAAAGGGATCAGACATCC+TGG - chr3.3:69128730-69128749 None:intergenic 40.0%
AAACCCACGATTTATTTCGC+AGG + chr3.3:69129089-69129108 MS.gene25729:intron 40.0%
AAAGCTCCAAACTTCTCTCA+TGG - chr3.3:69126581-69126600 None:intergenic 40.0%
AACAAGCCATGAGAGAAGTT+TGG + chr3.3:69126572-69126591 MS.gene25729:intron 40.0%
ACAAATGATGCACACCACAA+AGG - chr3.3:69127687-69127706 None:intergenic 40.0%
ACAATATGCTATCTGGTGTG+TGG + chr3.3:69127412-69127431 MS.gene25729:CDS 40.0%
ACACACCAGATAGCATATTG+TGG - chr3.3:69127413-69127432 None:intergenic 40.0%
AGGATTCACTTTCACGACAT+AGG - chr3.3:69128990-69129009 None:intergenic 40.0%
AGTGAATTGAAAGGTGGAAG+GGG - chr3.3:69127164-69127183 None:intergenic 40.0%
ATAGGTGGCAAGTATACTTG+AGG - chr3.3:69127353-69127372 None:intergenic 40.0%
ATATGTGTTCGGACACGATA+CGG + chr3.3:69127724-69127743 MS.gene25729:intron 40.0%
ATGCATGGTTTACCACACAA+AGG - chr3.3:69125914-69125933 None:intergenic 40.0%
ATGGTTTATGATACTCCCTC+CGG - chr3.3:69126495-69126514 None:intergenic 40.0%
ATTGACACTTCCAATTCTGG+TGG - chr3.3:69126278-69126297 None:intergenic 40.0%
CAAGTGAATTGAAAGGTGGA+AGG - chr3.3:69127166-69127185 None:intergenic 40.0%
CCGTTGTGAATATGTGTATG+TGG - chr3.3:69128832-69128851 None:intergenic 40.0%
CGAAATAAATCGTGGGTTTG+AGG - chr3.3:69129088-69129107 None:intergenic 40.0%
GAAGCTACTCCATCAAATCA+TGG + chr3.3:69127048-69127067 MS.gene25729:CDS 40.0%
GCATAAATGGGCCAATAAGA+TGG - chr3.3:69126202-69126221 None:intergenic 40.0%
GCCAGTTGAATTATAGGATC+AGG - chr3.3:69127452-69127471 None:intergenic 40.0%
GCCTAAAAACATCATGAGGT+GGG - chr3.3:69127232-69127251 None:intergenic 40.0%
GCTATAGCAGGTAAAAGTGA+AGG - chr3.3:69126008-69126027 None:intergenic 40.0%
GTCATAGCAAAACCAGAATC+AGG - chr3.3:69126801-69126820 None:intergenic 40.0%
TGCATGGTTTACCACACAAA+GGG - chr3.3:69125913-69125932 None:intergenic 40.0%
TGTGGTGCAAGTGAATTGAA+AGG - chr3.3:69127173-69127192 None:intergenic 40.0%
TTCACTGTGTATCTTCACCA+TGG + chr3.3:69126079-69126098 MS.gene25729:intron 40.0%
! AAAACATCATGAGGTGGGTT+TGG - chr3.3:69127227-69127246 None:intergenic 40.0%
! ACCCACCTCATGATGTTTTT+AGG + chr3.3:69127228-69127247 MS.gene25729:CDS 40.0%
! GATGGTAGTGCAAACTTACT+TGG - chr3.3:69127656-69127675 None:intergenic 40.0%
! GGCTTTTTATGACTTGAAGG+TGG - chr3.3:69127389-69127408 None:intergenic 40.0%
! GGTGGCTTTTTATGACTTGA+AGG - chr3.3:69127392-69127411 None:intergenic 40.0%
! TTTGGAACAGGTGAATAAGG+TGG - chr3.3:69127209-69127228 None:intergenic 40.0%
!! AGCCCACCTAAAAGTGTTAT+AGG + chr3.3:69127323-69127342 MS.gene25729:CDS 40.0%
!! ATAACACTTTTAGGTGGGCT+TGG - chr3.3:69127323-69127342 None:intergenic 40.0%
!! CCACTTTTACATGCTACAAC+CGG - chr3.3:69126886-69126905 None:intergenic 40.0%
!! GGCCTATAACACTTTTAGGT+GGG - chr3.3:69127328-69127347 None:intergenic 40.0%
!! TCACTTTTACCTGCTATAGC+AGG + chr3.3:69126008-69126027 MS.gene25729:intron 40.0%
!!! ATGGGTGCACCTTCTTTTTT+GGG + chr3.3:69126915-69126934 MS.gene25729:intron 40.0%
!!! GGAGTTTGAGCTAGTTTTCT+TGG - chr3.3:69126153-69126172 None:intergenic 40.0%
!!! GGCTTGGAACATGTTTTGAT+GGG - chr3.3:69127307-69127326 None:intergenic 40.0%
!!! GTAACAGTGGTTTTAGGACT+TGG - chr3.3:69127260-69127279 None:intergenic 40.0%
!!! TTCTGGTTTTGCTATGACAG+AGG + chr3.3:69126803-69126822 MS.gene25729:intron 40.0%
ACCACACAAAGGGAATAGAG+TGG - chr3.3:69125903-69125922 None:intergenic 45.0%
ACTGGTAAGTGATGCGATTG+CGG - chr3.3:69126121-69126140 None:intergenic 45.0%
AGCCACCACAATATGCTATC+TGG + chr3.3:69127405-69127424 MS.gene25729:CDS 45.0%
AGGTGAATAAGGTGGTAGAG+AGG - chr3.3:69127201-69127220 None:intergenic 45.0%
ATCAGACATCCTGGTACTCA+GGG - chr3.3:69128721-69128740 None:intergenic 45.0%
CACCAGATAGCATATTGTGG+TGG - chr3.3:69127410-69127429 None:intergenic 45.0%
CAGAACACTAAGATTGGTGG+GGG + chr3.3:69127587-69127606 MS.gene25729:CDS 45.0%
CATTTCATTGGCACACCTTG+TGG + chr3.3:69128770-69128789 MS.gene25729:intron 45.0%
CCGGTTGTAGCATGTAAAAG+TGG + chr3.3:69126883-69126902 MS.gene25729:intron 45.0%
CGCGTGAATCTAATACCACA+AGG - chr3.3:69128788-69128807 None:intergenic 45.0%
GAATAAGGTGGTAGAGAGGT+AGG - chr3.3:69127197-69127216 None:intergenic 45.0%
GAGTGGAAACTAGCATCAAG+AGG - chr3.3:69125886-69125905 None:intergenic 45.0%
GCACAAACACTCCTTGGATT+AGG - chr3.3:69127859-69127878 None:intergenic 45.0%
GCAGAACACTAAGATTGGTG+GGG + chr3.3:69127586-69127605 MS.gene25729:CDS 45.0%
GCTACCGATGTTAGGAATTC+GGG - chr3.3:69128562-69128581 None:intergenic 45.0%
GGCAGAACACTAAGATTGGT+GGG + chr3.3:69127585-69127604 MS.gene25729:CDS 45.0%
GGCCTAAAAACATCATGAGG+TGG - chr3.3:69127233-69127252 None:intergenic 45.0%
GGCTACCGATGTTAGGAATT+CGG - chr3.3:69128563-69128582 None:intergenic 45.0%
GGTGCAAGTGAATTGAAAGG+TGG - chr3.3:69127170-69127189 None:intergenic 45.0%
GGTGGCCTAAAAACATCATG+AGG - chr3.3:69127236-69127255 None:intergenic 45.0%
GTGCTCCATAGGTGACTATA+TGG + chr3.3:69127875-69127894 MS.gene25729:intron 45.0%
GTGGCAAGTATACTTGAGGT+GGG - chr3.3:69127349-69127368 None:intergenic 45.0%
TATGGAGCACAAACACTCCT+TGG - chr3.3:69127865-69127884 None:intergenic 45.0%
TCCACTCTATTCCCTTTGTG+TGG + chr3.3:69125899-69125918 MS.gene25729:CDS 45.0%
TGGCAGAACACTAAGATTGG+TGG + chr3.3:69127584-69127603 MS.gene25729:CDS 45.0%
! CCACAAAAAAAAGGGTGCAC+CGG + chr3.3:69125977-69125996 MS.gene25729:intron 45.0%
! GGGCCTATAACACTTTTAGG+TGG - chr3.3:69127329-69127348 None:intergenic 45.0%
! GGGTTTGGAACAGGTGAATA+AGG - chr3.3:69127212-69127231 None:intergenic 45.0%
! GGTGGGCCTATAACACTTTT+AGG - chr3.3:69127332-69127351 None:intergenic 45.0%
! TCCTTGGATTAGGTGTGTTC+CGG - chr3.3:69127849-69127868 None:intergenic 45.0%
! TGGCATATGCCTTTGTTGTG+TGG - chr3.3:69128498-69128517 None:intergenic 45.0%
! TGGCTATGGACTATGCTTGT+GGG + chr3.3:69127468-69127487 MS.gene25729:CDS 45.0%
! TTATGACTTGAAGGTGGTGG+TGG - chr3.3:69127383-69127402 None:intergenic 45.0%
!! AAGGAGTGTTTGTGCTCCAT+AGG + chr3.3:69127864-69127883 MS.gene25729:intron 45.0%
!! GAATTCGGGTTTTCTCTACC+CGG - chr3.3:69128548-69128567 None:intergenic 45.0%
!! GGGCTTGGAACATGTTTTGA+TGG - chr3.3:69127308-69127327 None:intergenic 45.0%
!! GGTGGTGGATAAACAATAGG+TGG - chr3.3:69127368-69127387 None:intergenic 45.0%
!! GGTGGTGGTGGATAAACAAT+AGG - chr3.3:69127371-69127390 None:intergenic 45.0%
!! TTCACAACGGCGTTGACTAA+TGG + chr3.3:69128842-69128861 MS.gene25729:intron 45.0%
!!! ACAGTGGTTTTAGGACTTGG+TGG - chr3.3:69127257-69127276 None:intergenic 45.0%
!!! ACATGTTTTGATGGGCTTGG+AGG - chr3.3:69127299-69127318 None:intergenic 45.0%
!!! CATGGGTGCACCTTCTTTTT+TGG + chr3.3:69126914-69126933 MS.gene25729:intron 45.0%
!!! GGAACATGTTTTGATGGGCT+TGG - chr3.3:69127302-69127321 None:intergenic 45.0%
!! AAATATTTATTTGTTTAATT+TGG + chr3.3:69126637-69126656 MS.gene25729:intron 5.0%
!! AATTAAAATATATATTTGTT+TGG - chr3.3:69128607-69128626 None:intergenic 5.0%
!! TCAAAAAAAAAAAAAAAAAA+GGG - chr3.3:69128744-69128763 None:intergenic 5.0%
!!! AATAAAATAATTTATTCTTT+TGG + chr3.3:69128297-69128316 MS.gene25729:intron 5.0%
!!! TATTTTATTATAATATTTAG+TGG - chr3.3:69128286-69128305 None:intergenic 5.0%
ACCGGAACACACCTAATCCA+AGG + chr3.3:69127845-69127864 MS.gene25729:intron 50.0%
AGCATGTGCCAACACTGTGT+TGG - chr3.3:69127543-69127562 None:intergenic 50.0%
CTGGTAAGTGATGCGATTGC+GGG - chr3.3:69126120-69126139 None:intergenic 50.0%
GATCAGACATCCTGGTACTC+AGG - chr3.3:69128722-69128741 None:intergenic 50.0%
GATTAGGTGTGTTCCGGTGT+CGG - chr3.3:69127843-69127862 None:intergenic 50.0%
GCATGTGCCAACACTGTGTT+GGG - chr3.3:69127542-69127561 None:intergenic 50.0%
GGTAAAAGTGAAGGGACCAC+CGG - chr3.3:69125999-69126018 None:intergenic 50.0%
GGTGGCAAGTATACTTGAGG+TGG - chr3.3:69127350-69127369 None:intergenic 50.0%
TGGACTATGCTTGTGGGTCT+GGG + chr3.3:69127474-69127493 MS.gene25729:CDS 50.0%
TGGTAAGTGATGCGATTGCG+GGG - chr3.3:69126119-69126138 None:intergenic 50.0%
! ATGGACTATGCTTGTGGGTC+TGG + chr3.3:69127473-69127492 MS.gene25729:CDS 50.0%
! CAAAAAAAAGGGTGCACCGG+TGG + chr3.3:69125980-69125999 MS.gene25729:intron 50.0%
! CTGGCTATGGACTATGCTTG+TGG + chr3.3:69127467-69127486 MS.gene25729:CDS 50.0%
! GGCTGGAAGCATATCCCATT+AGG - chr3.3:69127521-69127540 None:intergenic 50.0%
! TCATGAGGTGGGTTTGGAAC+AGG - chr3.3:69127221-69127240 None:intergenic 50.0%
!!! CCGGTGCACCCTTTTTTTTG+TGG - chr3.3:69125980-69125999 None:intergenic 50.0%
!!! GTGGTTTTAGGACTTGGTGG+TGG - chr3.3:69127254-69127273 None:intergenic 50.0%
!!! TGTTTTGATGGGCTTGGAGG+TGG - chr3.3:69127296-69127315 None:intergenic 50.0%
ATCGGACGGCTACCGATGTT+AGG - chr3.3:69128570-69128589 None:intergenic 55.0%
CTTCCAGCCCAACACAGTGT+TGG + chr3.3:69127532-69127551 MS.gene25729:CDS 55.0%
GGACTATGCTTGTGGGTCTG+GGG + chr3.3:69127475-69127494 MS.gene25729:CDS 55.0%
GGTGGAAGGGGTTGAGAAGA+AGG - chr3.3:69127152-69127171 None:intergenic 55.0%
GGTGGTAGAGAGGTAGGTTG+TGG - chr3.3:69127191-69127210 None:intergenic 55.0%
TGGCGGCGACATTGTAACAG+TGG - chr3.3:69127273-69127292 None:intergenic 55.0%
TGTGTGCTTCCCTGAGTACC+AGG + chr3.3:69128709-69128728 MS.gene25729:intron 55.0%
! TCGGGTTTTCTCTACCCGGA+TGG - chr3.3:69128544-69128563 None:intergenic 55.0%
!! TTTGATGGGCTTGGAGGTGG+TGG - chr3.3:69127293-69127312 None:intergenic 55.0%
!!! GGGGGCACTTGTGATTTTGG+TGG + chr3.3:69127605-69127624 MS.gene25729:CDS 55.0%
!!! GGTGGGGGCACTTGTGATTT+TGG + chr3.3:69127602-69127621 MS.gene25729:CDS 55.0%
CGATTGCGGGGACTTGTGGT+GGG - chr3.3:69126107-69126126 None:intergenic 60.0%
GATGCGATTGCGGGGACTTG+TGG - chr3.3:69126111-69126130 None:intergenic 60.0%
GGACACTGACACGCCGACAT+CGG + chr3.3:69127745-69127764 MS.gene25729:intron 60.0%
GTGCCAACACTGTGTTGGGC+TGG - chr3.3:69127538-69127557 None:intergenic 60.0%
! GGGACTTGTGGTGGGATCCA+TGG - chr3.3:69126099-69126118 None:intergenic 60.0%
!! CACTGACTCGTGTCCGACAC+CGG + chr3.3:69127827-69127846 MS.gene25729:intron 60.0%
GCGATTGCGGGGACTTGTGG+TGG - chr3.3:69126108-69126127 None:intergenic 65.0%
! GATGGGCTTGGAGGTGGTGG+CGG - chr3.3:69127290-69127309 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 69125833 69129142 69125833 ID=MS.gene25729
chr3.3 mRNA 69125833 69129142 69125833 ID=MS.gene25729.t1;Parent=MS.gene25729
chr3.3 exon 69125833 69125920 69125833 ID=MS.gene25729.t1.exon1;Parent=MS.gene25729.t1
chr3.3 CDS 69125833 69125920 69125833 ID=cds.MS.gene25729.t1;Parent=MS.gene25729.t1
chr3.3 exon 69127021 69127656 69127021 ID=MS.gene25729.t1.exon2;Parent=MS.gene25729.t1
chr3.3 CDS 69127021 69127656 69127021 ID=cds.MS.gene25729.t1;Parent=MS.gene25729.t1
chr3.3 exon 69129111 69129142 69129111 ID=MS.gene25729.t1.exon3;Parent=MS.gene25729.t1
chr3.3 CDS 69129111 69129142 69129111 ID=cds.MS.gene25729.t1;Parent=MS.gene25729.t1
Gene Sequence

>MS.gene25729

ATGGATTCATCAAGAGCTTACATCCTTAGATTCAACATTGCTCATCTTTGCCTCTTGATGCTAGTTTCCACTCTATTCCCTTTGTGTGGTAAACCATGCATGCATATAATTATATGATTATTTCATGGGAGCCCCTAATATGCACCACAAAAAAAAGGGTGCACCGGTGGTCCCTTCACTTTTACCTGCTATAGCAGGTTTTTGTAATATTTTGATAAAATTTGGGCGTCTATCTTGTAATCTTACTTCACTGTGTATCTTCACCATGGATCCCACCACAAGTCCCCGCAATCGCATCACTTACCAGTTGAATCAAACCAAGAAAACTAGCTCAAACTCCAAAAAAAAAATCATGTTTTTCTATGACCATCTTATTGGCCCATTTATGCTACTCAAAATCCTCAAAGTACAATTACCAATAAGAATTGGGAATTGTTAAACTCCACCAGAATTGGAAGTGTCAATTATCTTCTTTTCCAAAATTGCTAACTTACTCAGATTTTTTCTTTCAATATATAACTACTCCCTTCGGTCACTATTATAAGCAAAACTCCACATTCTAGGTACATTCAATAATCAATGTATCTAGTCTTTGTTATAGACTAGATACATTAATTATTCAATGTATCTAAAAAGTAAAGTTTTGCTTATAATAATGACCGGAGGGAGTATCATAAACCATCGATTGTCGGTTATTTAAAGGGTTGAGTTTTTTTTTTCCTTTCATGGTGATGAAAATAACAAGCCATGAGAGAAGTTTGGAGCTTTAAAATATTAATTTTAATTGACATTCATTTTGACAAAAAATATTTATTTGTTTAATTTGGAGTCGCATGCAAATTTGATTGATATTGGTCTCCTATGTAAATACTTCTTAATTCCTTTTTATTGTTTGCCATGGAGAATGAAGATTTGATTTTTCATGGAAGATATTAAGGGAAGAAGATAAAGCAAAATGGTTATTTCCTGATTCTGGTTTTGCTATGACAGAGGTAAGCCTGATGCGAAACAAAACAAAACAATGCCTCTTCCATACAAATATTATCAAAACCGGTTGTAGCATGTAAAAGTGGAAAAGGTTCATGGGTGCACCTTCTTTTTTGGGTGCATATTAGGGACTCCCTTATTTCATATACTAATCTATCTAATATATAACTTTAGTGTGTGTAACTTTTGGTAAATTTGCAGATGCTATAAATCATGGAAGAGGTAGTAGAAGCTACTCCATCAAATCATGGAAGAAACTCAAATATCAAAATGGTTTCAACAAATTTTCATCATTTGGCTACTCAGATTTAGATTCTTCATATGGTTCTCCTTCTTCTCAACCCCTTCCACCTTTCAATTCACTTGCACCACAACCTACCTCTCTACCACCTTATTCACCTGTTCCAAACCCACCTCATGATGTTTTTAGGCCACCACCAAGTCCTAAAACCACTGTTACAATGTCGCCGCCACCACCTCCAAGCCCATCAAAACATGTTCCAAGCCCACCTAAAAGTGTTATAGGCCCACCTCAAGTATACTTGCCACCTATTGTTTATCCACCACCACCTTCAAGTCATAAAAAGCCACCACAATATGCTATCTGGTGTGTGGCAAAGCCTACAGTTCCTGATCCTATAATTCAACTGGCTATGGACTATGCTTGTGGGTCTGGGGCTGACTGTAAATCAGTTCAGCCTAATGGGATATGCTTCCAGCCCAACACAGTGTTGGCACATGCTTCTTATGCATTCAATAGCTATTGGCAGAACACTAAGATTGGTGGGGGCACTTGTGATTTTGGTGGCACTGCTATGCTTGTCACTGTTGATCCAAGTAAGTTTGCACTACCATCTTTGTTTACCTTTGTGGTGTGCATCATTTGTCATGTGAGTCTGTGACTATATGTGTTCGGACACGATACGGACACTGACACGCCGACATCGGTAAGAATCTCATAAAATGACATAATTTGATGTAATCATAGGTGTCATGTCAGTGTCTGACACTGACTCGTGTCCGACACCGGAACACACCTAATCCAAGGAGTGTTTGTGCTCCATAGGTGACTATATGGTGAAACTAAAAACCAAAAATAATCATTTAGTGATGATATTTTGATAAGCACTACCTTTTTTTTAATTGCTGATAAAATTTTCTCATATGGATAAAGGAACTTTTTTTTTTTGGTACAACATATGGATAAAGGAACTTAGTTAAGTGAAAAAAGAAATGAAATTTTAACCCTTAATGATATTTTACTGGTGTATTTGGTAAAGAGATTAATTTTCATGTATTTCATGTTCTACACTTTTTTTTAATAAATGTTCTACACTGTTAGCACAATACATGTAGAACATGTTGATCTAATGATAAAATTATATGCATGGACTTTGGAAGTTGATTATGATAAAATTTAAACAGTTGATCTAATAATTACGATGGATTGACAGTGTAAAAATCCACTAAATATTATAATAAAATAATTTATTCTTTTGGTACGAAAAATAAAATAAATTTATTTTTTTGGTAAAAAGAATAACATAAATTTGAATGAAATTATATGACAAAATTATTTCTTCACATGTTTCATTCATGTATATTGAGATTCGTTTTTGTTCAATGAGATCCTTATTTAACCGTTAGTTAAGTCATTTCACATCACATACTATATCCACACAACAAAGGCATATGCCACTTGATTTCTTTTCATTTGGAATCCATCCGGGTAGAGAAAACCCGAATTCCTAACATCGGTAGCCGTCCGATTAAAAATAAATGGTCCAAACAAATATATATTTTAATTTTGATTTTATAATTTAAAATACCAAACTTAAATATGATCTGTTGAAACTTGATCAAACAGCTACTGAAATGCTAATGTGTGATGTGTGCTTCCCTGAGTACCAGGATGTCTGATCCCTTTTTTTTTTTTTTTTTTGAGGTGCACATTTCATTGGCACACCTTGTGGTATTAGATTCACGCGCAGTCACTTAAAAGTTAAAATCCACATACACATATTCACAACGGCGTTGACTAATGGATCAAGATCTGATCGAATTTTAAGCATTTTTTTAAATAAAAAACTAAAATTCAACCTCTTTTAAATAAAAAACTAAAATTCAACCTCAAAACCTACATTGTTCGATCTAGATTCAACAATCACCTATGTCGTGAAAGTGAATCCTTGTAACTACATAGAATGCATATTCCGTCGTCTTTTTAATTTAAAACTATGGTCTTTTGCTTCAGACTAACATTTTCCTCAAACCCACGATTTATTTCGCAGGTTATGACAAGTGCATCTTCAAGTCGACTTAG
Protein sequence

>MS.gene25729.t1

MDSSRAYILRFNIAHLCLLMLVSTLFPLCDAINHGRGSRSYSIKSWKKLKYQNGFNKFSSFGYSDLDSSYGSPSSQPLPPFNSLAPQPTSLPPYSPVPNPPHDVFRPPPSPKTTVTMSPPPPPSPSKHVPSPPKSVIGPPQVYLPPIVYPPPPSSHKKPPQYAIWCVAKPTVPDPIIQLAMDYACGSGADCKSVQPNGICFQPNTVLAHASYAFNSYWQNTKIGGGTCDFGGTAMLVTVDPSYDKCIFKST