Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25766.t1 | XP_013461117.1 | 94.4 | 411 | 23 | 0 | 1 | 411 | 1 | 411 | 4.10E-230 | 807 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25766.t1 | Q67ZU1 | 44.3 | 415 | 218 | 5 | 1 | 408 | 6 | 414 | 1.3e-99 | 364.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25766.t1 | A0A072V0B6 | 94.4 | 411 | 23 | 0 | 1 | 411 | 1 | 411 | 2.9e-230 | 807.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene25766 | 0.805596 | 1.24E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene25766 | 0.806169 | 9.37E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene25766 | 0.807553 | 4.78E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene25766 | 0.804178 | 2.45E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene25766 | 0.824611 | 7.35E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25766.t1 | MTR_3g081060 | 94.404 | 411 | 23 | 0 | 1 | 411 | 1 | 411 | 0.0 | 813 |
| MS.gene25766.t1 | MTR_3g081040 | 79.442 | 394 | 78 | 2 | 18 | 411 | 16 | 406 | 0.0 | 662 |
| MS.gene25766.t1 | MTR_7g081050 | 76.225 | 408 | 93 | 3 | 4 | 411 | 2 | 405 | 0.0 | 660 |
| MS.gene25766.t1 | MTR_3g080980 | 68.966 | 406 | 123 | 3 | 6 | 411 | 3 | 405 | 0.0 | 582 |
| MS.gene25766.t1 | MTR_7g081060 | 63.300 | 406 | 145 | 4 | 4 | 409 | 2 | 403 | 0.0 | 527 |
| MS.gene25766.t1 | MTR_6g033965 | 63.480 | 408 | 144 | 4 | 4 | 411 | 2 | 404 | 0.0 | 526 |
| MS.gene25766.t1 | MTR_6g033975 | 61.029 | 408 | 153 | 5 | 4 | 411 | 2 | 403 | 9.80e-177 | 499 |
| MS.gene25766.t1 | MTR_5g084950 | 52.488 | 402 | 183 | 5 | 9 | 409 | 6 | 400 | 1.46e-152 | 437 |
| MS.gene25766.t1 | MTR_7g029365 | 50.543 | 368 | 177 | 3 | 45 | 409 | 45 | 410 | 2.16e-130 | 381 |
| MS.gene25766.t1 | MTR_6g023740 | 43.489 | 407 | 223 | 4 | 8 | 408 | 6 | 411 | 1.92e-122 | 361 |
| MS.gene25766.t1 | MTR_6g023715 | 44.715 | 369 | 179 | 6 | 45 | 408 | 44 | 392 | 6.91e-114 | 339 |
| MS.gene25766.t1 | MTR_6g023750 | 45.584 | 351 | 185 | 3 | 63 | 408 | 5 | 354 | 4.79e-110 | 328 |
| MS.gene25766.t1 | MTR_1g107330 | 41.398 | 372 | 202 | 6 | 47 | 410 | 35 | 398 | 2.38e-100 | 304 |
| MS.gene25766.t1 | MTR_7g029365 | 51.331 | 263 | 124 | 2 | 45 | 304 | 45 | 306 | 1.32e-89 | 274 |
| MS.gene25766.t1 | MTR_0595s0010 | 47.660 | 235 | 102 | 5 | 12 | 232 | 9 | 236 | 3.77e-70 | 224 |
| MS.gene25766.t1 | MTR_1g107330 | 41.353 | 266 | 146 | 4 | 47 | 304 | 35 | 298 | 2.09e-66 | 214 |
| MS.gene25766.t1 | MTR_5g006650 | 51.176 | 170 | 70 | 4 | 69 | 233 | 44 | 205 | 5.40e-47 | 161 |
| MS.gene25766.t1 | MTR_3g081000 | 48.039 | 102 | 19 | 2 | 304 | 405 | 5 | 72 | 2.78e-20 | 85.9 |
| MS.gene25766.t1 | MTR_6g085070 | 34.959 | 123 | 74 | 3 | 48 | 170 | 160 | 276 | 6.10e-13 | 70.9 |
| MS.gene25766.t1 | MTR_6g085070 | 34.959 | 123 | 74 | 3 | 48 | 170 | 292 | 408 | 9.45e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25766.t1 | AT5G14180 | 44.231 | 416 | 219 | 5 | 1 | 409 | 6 | 415 | 2.02e-126 | 372 |
| MS.gene25766.t1 | AT2G15230 | 42.857 | 385 | 199 | 7 | 30 | 410 | 19 | 386 | 2.68e-106 | 319 |
| MS.gene25766.t1 | AT5G14180 | 46.129 | 310 | 165 | 2 | 100 | 409 | 8 | 315 | 1.12e-100 | 302 |
| MS.gene25766.t1 | AT5G14180 | 46.405 | 306 | 162 | 2 | 104 | 409 | 3 | 306 | 3.64e-100 | 301 |
| MS.gene25766.t1 | AT5G14180 | 43.087 | 311 | 165 | 4 | 1 | 304 | 6 | 311 | 3.52e-88 | 270 |
| MS.gene25766.t1 | AT5G14180 | 41.786 | 280 | 151 | 4 | 1 | 273 | 6 | 280 | 6.32e-72 | 228 |
| MS.gene25766.t1 | AT1G18460 | 34.146 | 123 | 75 | 3 | 48 | 170 | 294 | 410 | 3.52e-11 | 65.5 |
Find 78 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGATACCATCATAATTAT+TGG | 0.187939 | 3.2:+71008845 | None:intergenic |
| GGGGAATTCACTAGGGATTT+TGG | 0.196713 | 3.2:+71006056 | None:intergenic |
| GAAGAATTTATGCAGCAATT+TGG | 0.255763 | 3.2:+71006697 | None:intergenic |
| GTCCTCCATAGCTGAGAAAA+AGG | 0.287005 | 3.2:+71006034 | None:intergenic |
| ATAAATCCCAATGATTCTTC+TGG | 0.296588 | 3.2:+71008239 | None:intergenic |
| TAATGTAACAGGATATATAT+TGG | 0.314959 | 3.2:-71007056 | MS.gene25766:intron |
| TCTAAAGTACCTGTGAATAA+TGG | 0.370637 | 3.2:+71006813 | None:intergenic |
| TAGTAGAGACACAAGGTTAT+AGG | 0.381421 | 3.2:-71008815 | MS.gene25766:CDS |
| ATTCTAATGAGCAGGGATAT+TGG | 0.385779 | 3.2:-71006897 | MS.gene25766:intron |
| TTCTTTGTTGCGGTTGGTTG+AGG | 0.386565 | 3.2:+71006646 | None:intergenic |
| CAATTCTCCAGAAGAATCAT+TGG | 0.404888 | 3.2:-71008246 | MS.gene25766:CDS |
| CAATATGTGAACAACTATAC+TGG | 0.408674 | 3.2:-71007956 | MS.gene25766:CDS |
| ATAAGAATTAACCATGTCAT+TGG | 0.413273 | 3.2:+71008136 | None:intergenic |
| TTGAGGTTCATGATCAAGAT+AGG | 0.416846 | 3.2:+71006663 | None:intergenic |
| CCATCATAATTATTGGTAAC+CGG | 0.420551 | 3.2:+71008852 | None:intergenic |
| GCACAAAATATACTACACTA+TGG | 0.422402 | 3.2:-71006108 | MS.gene25766:CDS |
| ATTTGAGTCATATGAGCAAT+TGG | 0.424879 | 3.2:+71007475 | None:intergenic |
| AGGATCCCGGTAGGGAGGTC+TGG | 0.426038 | 3.2:-71008565 | MS.gene25766:CDS |
| TCCCTACCGGGATCCTCTGC+AGG | 0.427098 | 3.2:+71008572 | None:intergenic |
| ATTGGAATAAAACTTCTAGA+TGG | 0.460556 | 3.2:-71006879 | MS.gene25766:CDS |
| TTCACATATTGTGCCGAAGC+AGG | 0.465515 | 3.2:+71007968 | None:intergenic |
| CAACCGTGTGGTATTGTTCA+AGG | 0.466765 | 3.2:-71005941 | MS.gene25766:CDS |
| TTCTTACCAGACCTCCCTAC+CGG | 0.466922 | 3.2:+71008559 | None:intergenic |
| ATCAAATTCTTTGTTGCGGT+TGG | 0.468295 | 3.2:+71006640 | None:intergenic |
| AGGCTTATTGGGATTGGTCA+TGG | 0.470187 | 3.2:-71008015 | MS.gene25766:CDS |
| GCATTATGTCGGTCATTCTC+AGG | 0.472282 | 3.2:-71007924 | MS.gene25766:intron |
| TTGTATAGGCTTATTGGGAT+TGG | 0.474063 | 3.2:-71008021 | MS.gene25766:intron |
| TGGTTATGATCTACCTGCTT+CGG | 0.479985 | 3.2:-71007981 | MS.gene25766:CDS |
| AATTCTCCAGAAGAATCATT+GGG | 0.482219 | 3.2:-71008245 | MS.gene25766:CDS |
| TAAGAATTAACCATGTCATT+GGG | 0.483284 | 3.2:+71008137 | None:intergenic |
| TAACAGGATATATATTGGTT+AGG | 0.485514 | 3.2:-71007051 | MS.gene25766:intron |
| CTGTGAATAATGGTAATAAA+CGG | 0.486883 | 3.2:+71006823 | None:intergenic |
| TTATAGGTGTGAAGAACATA+AGG | 0.489204 | 3.2:-71008799 | MS.gene25766:intron |
| ATTTGAGCAGTGATCAGATC+AGG | 0.490676 | 3.2:-71006162 | MS.gene25766:intron |
| ACGCATGTGGAACGAATTCA+CGG | 0.501834 | 3.2:+71007025 | None:intergenic |
| CCGGTTACCAATAATTATGA+TGG | 0.503116 | 3.2:-71008852 | MS.gene25766:CDS |
| GGCTTATTGGGATTGGTCAT+GGG | 0.506432 | 3.2:-71008014 | MS.gene25766:CDS |
| TAAACGGTTTGTGCAGTTGA+GGG | 0.507348 | 3.2:+71006839 | None:intergenic |
| TAGCATCATGGTCATTATTG+AGG | 0.509250 | 3.2:+71005965 | None:intergenic |
| AGACCGTGTTGGATTAATAC+AGG | 0.511410 | 3.2:+71008523 | None:intergenic |
| TATTTATTCTCTTACGCATG+TGG | 0.511783 | 3.2:+71007012 | None:intergenic |
| ACCTAGGTTACAACAGATGA+TGG | 0.517461 | 3.2:-71008607 | MS.gene25766:intron |
| TATACTACACTATGGACAAA+GGG | 0.522679 | 3.2:-71006100 | MS.gene25766:CDS |
| TTTGATGTGTGGCTTATCAA+TGG | 0.534449 | 3.2:-71008200 | MS.gene25766:CDS |
| TTGCTGCATAAATTCTTCAA+AGG | 0.534860 | 3.2:-71006692 | MS.gene25766:CDS |
| TGGTCATGGGATGAATTAGC+TGG | 0.535170 | 3.2:-71008001 | MS.gene25766:CDS |
| CGTTTATTACCATTATTCAC+AGG | 0.536396 | 3.2:-71006822 | MS.gene25766:intron |
| GGGACTTAGTGATGTGTGGT+TGG | 0.541934 | 3.2:+71008157 | None:intergenic |
| CTTGAGCCTGCAGAGGATCC+CGG | 0.547280 | 3.2:-71008578 | MS.gene25766:CDS |
| GCTTCTAAATGTATTAAGAT+CGG | 0.547639 | 3.2:-71007512 | MS.gene25766:CDS |
| ATGGATCAAATTCTTTGTTG+CGG | 0.548247 | 3.2:+71006636 | None:intergenic |
| ATAAACGGTTTGTGCAGTTG+AGG | 0.551432 | 3.2:+71006838 | None:intergenic |
| TAATTATTGGTAACCGGAGA+GGG | 0.551516 | 3.2:+71008858 | None:intergenic |
| TGGTTATGTCATAAGTTGGA+GGG | 0.552987 | 3.2:+71006076 | None:intergenic |
| TATTTCAGGATGCTGCCGTA+TGG | 0.566764 | 3.2:-71008274 | MS.gene25766:intron |
| ATATACTACACTATGGACAA+AGG | 0.568705 | 3.2:-71006101 | MS.gene25766:CDS |
| GCCTGCAGAGGATCCCGGTA+GGG | 0.576569 | 3.2:-71008573 | MS.gene25766:CDS |
| ATCTGATGTACAAGATGTGA+AGG | 0.579082 | 3.2:-71006001 | MS.gene25766:CDS |
| CAGATATTGGATTTGATGTG+TGG | 0.580726 | 3.2:-71008211 | MS.gene25766:CDS |
| TGCAGAGGATCCCGGTAGGG+AGG | 0.585018 | 3.2:-71008570 | MS.gene25766:CDS |
| TTGGTTATGTCATAAGTTGG+AGG | 0.588348 | 3.2:+71006075 | None:intergenic |
| TCTTACCAGACCTCCCTACC+GGG | 0.592675 | 3.2:+71008560 | None:intergenic |
| CCACACGGTTGCTAGCATCA+TGG | 0.601075 | 3.2:+71005953 | None:intergenic |
| CATTGGGACTTAGTGATGTG+TGG | 0.618477 | 3.2:+71008153 | None:intergenic |
| AGCCTGCAGAGGATCCCGGT+AGG | 0.629406 | 3.2:-71008574 | MS.gene25766:CDS |
| GTGTGGCTTATCAATGGTCG+AGG | 0.630199 | 3.2:-71008194 | MS.gene25766:CDS |
| TTACACAAAAGAGACCGTGT+TGG | 0.632462 | 3.2:+71008512 | None:intergenic |
| ATCACTAAGTCCCAATGACA+TGG | 0.633044 | 3.2:-71008147 | MS.gene25766:intron |
| TGGAGAATTGAACAACCATA+CGG | 0.639873 | 3.2:+71008259 | None:intergenic |
| ATAATTATTGGTAACCGGAG+AGG | 0.651880 | 3.2:+71008857 | None:intergenic |
| AGGGAGGTCTGGTAAGAAAG+CGG | 0.661319 | 3.2:-71008554 | MS.gene25766:CDS |
| GTTACATCTTGAGCCTGCAG+AGG | 0.665718 | 3.2:-71008585 | MS.gene25766:CDS |
| CATCCTTGAACAATACCACA+CGG | 0.673124 | 3.2:+71005938 | None:intergenic |
| CCTCCTGTATTAATCCAACA+CGG | 0.674457 | 3.2:-71008526 | MS.gene25766:CDS |
| CCGTGTTGGATTAATACAGG+AGG | 0.674602 | 3.2:+71008526 | None:intergenic |
| AAGACTATAGTAGAGACACA+AGG | 0.733760 | 3.2:-71008822 | MS.gene25766:CDS |
| CCATGATGCTAGCAACCGTG+TGG | 0.780724 | 3.2:-71005953 | MS.gene25766:CDS |
| CATGTGGAACGAATTCACGG+AGG | 0.834375 | 3.2:+71007028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATATAAAAATGACA+TGG | + | chr3.2:71008484-71008503 | None:intergenic | 10.0% |
| !! | AAATAGTAAGTAAAAAAATA+GGG | + | chr3.2:71007833-71007852 | None:intergenic | 10.0% |
| !! | AAATATTTGATGTAAAATAT+GGG | + | chr3.2:71006179-71006198 | None:intergenic | 10.0% |
| !! | TAAATATTTGATGTAAAATA+TGG | + | chr3.2:71006180-71006199 | None:intergenic | 10.0% |
| !! | CAAATAGTAAGTAAAAAAAT+AGG | + | chr3.2:71007834-71007853 | None:intergenic | 15.0% |
| !! | TAGATGATTAAAGATATTAA+CGG | + | chr3.2:71007017-71007036 | None:intergenic | 15.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | - | chr3.2:71007121-71007140 | MS.gene25766:intron | 15.0% |
| !!! | ACTATTGATATAAATTTTTC+AGG | - | chr3.2:71007246-71007265 | MS.gene25766:intron | 15.0% |
| !!! | CTATTGATATAAATTTTTCA+GGG | - | chr3.2:71007247-71007266 | MS.gene25766:intron | 15.0% |
| !!! | TTATTTTACAAAGAAAAAAG+TGG | - | chr3.2:71007577-71007596 | MS.gene25766:intron | 15.0% |
| !!! | TTTTCATAATTGTATTCAAT+TGG | + | chr3.2:71007727-71007746 | None:intergenic | 15.0% |
| !!! | TTTTTTATTCCATTTTGTAT+AGG | - | chr3.2:71006783-71006802 | MS.gene25766:intron | 15.0% |
| !! | AACTATGCATAATATTAAAG+AGG | - | chr3.2:71007509-71007528 | MS.gene25766:CDS | 20.0% |
| !! | ATCATACTTAACAAAACTTT+AGG | + | chr3.2:71008437-71008456 | None:intergenic | 20.0% |
| !! | GATCAAATTATATTTAGTCA+TGG | + | chr3.2:71008257-71008276 | None:intergenic | 20.0% |
| !! | TAATGTAACAGGATATATAT+TGG | - | chr3.2:71007762-71007781 | MS.gene25766:intron | 20.0% |
| !! | TCAATATTGTATATGTAAAG+CGG | - | chr3.2:71006353-71006372 | MS.gene25766:intron | 20.0% |
| !!! | ACCTATAAATTTTAAAGGTA+AGG | + | chr3.2:71008101-71008120 | None:intergenic | 20.0% |
| !!! | ATTTTTATGCATTTATGAAC+AGG | - | chr3.2:71008597-71008616 | MS.gene25766:CDS | 20.0% |
| !!! | TAAAATTAATTTTCTCTACG+TGG | - | chr3.2:71008524-71008543 | MS.gene25766:CDS | 20.0% |
| !!! | TCCTTACCTTTAAAATTTAT+AGG | - | chr3.2:71008097-71008116 | MS.gene25766:intron | 20.0% |
| !!! | TGTTATTTTAACAACCAATT+TGG | - | chr3.2:71007534-71007553 | MS.gene25766:CDS | 20.0% |
| !!! | TTTGGACCTATAAATTTTAA+AGG | + | chr3.2:71008106-71008125 | None:intergenic | 20.0% |
| ! | ACACTAACAAACATGAAAAT+AGG | + | chr3.2:71006458-71006477 | None:intergenic | 25.0% |
| ! | ATAAGAATTAACCATGTCAT+TGG | + | chr3.2:71006685-71006704 | None:intergenic | 25.0% |
| ! | ATCCTGTTACATTAGAAAAA+AGG | + | chr3.2:71007756-71007775 | None:intergenic | 25.0% |
| ! | ATGTTTGAGTGCAAAAAAAA+GGG | - | chr3.2:71007859-71007878 | MS.gene25766:intron | 25.0% |
| ! | ATTGGAATAAAACTTCTAGA+TGG | - | chr3.2:71007939-71007958 | MS.gene25766:CDS | 25.0% |
| ! | CTGTGAATAATGGTAATAAA+CGG | + | chr3.2:71007998-71008017 | None:intergenic | 25.0% |
| ! | CTTTATAACTTCAAAAGACA+CGG | - | chr3.2:71008315-71008334 | MS.gene25766:intron | 25.0% |
| ! | GCTTCTAAATGTATTAAGAT+CGG | - | chr3.2:71007306-71007325 | MS.gene25766:intron | 25.0% |
| ! | GGTACTTTAGATGTTAATAA+TGG | - | chr3.2:71008017-71008036 | MS.gene25766:intron | 25.0% |
| ! | TAACGGTCAAAATTATACAT+TGG | + | chr3.2:71007000-71007019 | None:intergenic | 25.0% |
| ! | TAAGAATTAACCATGTCATT+GGG | + | chr3.2:71006684-71006703 | None:intergenic | 25.0% |
| ! | TACAAAGAAAAAAGTGGTAT+TGG | - | chr3.2:71007583-71007602 | MS.gene25766:intron | 25.0% |
| ! | TATGTTAATTCTAATGAGCA+GGG | - | chr3.2:71007914-71007933 | MS.gene25766:intron | 25.0% |
| ! | TATGTTTGAGTGCAAAAAAA+AGG | - | chr3.2:71007858-71007877 | MS.gene25766:intron | 25.0% |
| ! | TCCTGTTACATTAGAAAAAA+GGG | + | chr3.2:71007755-71007774 | None:intergenic | 25.0% |
| ! | TGATTCCTATGATTTATTTC+AGG | - | chr3.2:71006530-71006549 | MS.gene25766:intron | 25.0% |
| ! | TTATGTTAATTCTAATGAGC+AGG | - | chr3.2:71007913-71007932 | MS.gene25766:intron | 25.0% |
| !! | TAACAGGATATATATTGGTT+AGG | - | chr3.2:71007767-71007786 | MS.gene25766:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr3.2:71007180-71007199 | MS.gene25766:intron | 25.0% |
| !!! | ATTTATTTTTGTGTTGACCT+AGG | - | chr3.2:71006195-71006214 | MS.gene25766:intron | 25.0% |
| !!! | ATTTTGGTTATGTCATAAGT+TGG | + | chr3.2:71008749-71008768 | None:intergenic | 25.0% |
| !!! | GACATGTATTTTGAAAAAGA+GGG | + | chr3.2:71006955-71006974 | None:intergenic | 25.0% |
| !!! | GGATTTATTTTAGCAGATAT+TGG | - | chr3.2:71006594-71006613 | MS.gene25766:intron | 25.0% |
| !!! | TGCACATATTGATTTTATAG+CGG | - | chr3.2:71008907-71008926 | MS.gene25766:CDS | 25.0% |
| AATTCTCCAGAAGAATCATT+GGG | - | chr3.2:71006573-71006592 | MS.gene25766:intron | 30.0% | |
| ACATATGCTACAGTTTCAAA+TGG | + | chr3.2:71006084-71006103 | None:intergenic | 30.0% | |
| ACTTTATCTCTCTATTGCTA+TGG | + | chr3.2:71007617-71007636 | None:intergenic | 30.0% | |
| AGCATCCTGAAATAAATCAT+AGG | + | chr3.2:71006538-71006557 | None:intergenic | 30.0% | |
| AGTTGTTACATACACAAACA+TGG | + | chr3.2:71007229-71007248 | None:intergenic | 30.0% | |
| ATAAATCCCAATGATTCTTC+TGG | + | chr3.2:71006582-71006601 | None:intergenic | 30.0% | |
| ATAGTGCACATTGCAAAAAT+TGG | - | chr3.2:71007162-71007181 | MS.gene25766:intron | 30.0% | |
| ATATACTACACTATGGACAA+AGG | - | chr3.2:71008717-71008736 | MS.gene25766:intron | 30.0% | |
| ATATGGGATATCAATTGAAG+TGG | + | chr3.2:71006163-71006182 | None:intergenic | 30.0% | |
| ATGGATCAAATTCTTTGTTG+CGG | + | chr3.2:71008185-71008204 | None:intergenic | 30.0% | |
| ATTTGAGTCATATGAGCAAT+TGG | + | chr3.2:71007346-71007365 | None:intergenic | 30.0% | |
| CAAATAAGTTGTCACCAAAT+TGG | + | chr3.2:71007551-71007570 | None:intergenic | 30.0% | |
| CAATATGTGAACAACTATAC+TGG | - | chr3.2:71006862-71006881 | MS.gene25766:CDS | 30.0% | |
| CGTTTATTACCATTATTCAC+AGG | - | chr3.2:71007996-71008015 | MS.gene25766:CDS | 30.0% | |
| GAAGAATTTATGCAGCAATT+TGG | + | chr3.2:71008124-71008143 | None:intergenic | 30.0% | |
| GATATCAATTGAAGTGGTAT+TGG | + | chr3.2:71006157-71006176 | None:intergenic | 30.0% | |
| GCACAAAATATACTACACTA+TGG | - | chr3.2:71008710-71008729 | MS.gene25766:intron | 30.0% | |
| GCAGATACCATCATAATTAT+TGG | + | chr3.2:71005976-71005995 | None:intergenic | 30.0% | |
| GCATTGAAAAAAGCTATCAT+GGG | + | chr3.2:71008962-71008981 | None:intergenic | 30.0% | |
| GGTCAAAAAATGCATTATGT+CGG | - | chr3.2:71006883-71006902 | MS.gene25766:CDS | 30.0% | |
| TATACTACACTATGGACAAA+GGG | - | chr3.2:71008718-71008737 | MS.gene25766:intron | 30.0% | |
| TATTTATTCTCTTACGCATG+TGG | + | chr3.2:71007809-71007828 | None:intergenic | 30.0% | |
| TTATAGGTGTGAAGAACATA+AGG | - | chr3.2:71006019-71006038 | MS.gene25766:CDS | 30.0% | |
| TTGCTGCATAAATTCTTCAA+AGG | - | chr3.2:71008126-71008145 | MS.gene25766:intron | 30.0% | |
| TTTCAAATGGTACGTGTAAA+TGG | + | chr3.2:71006071-71006090 | None:intergenic | 30.0% | |
| ! | AGCAGCAATTTTTGTTAACT+CGG | + | chr3.2:71007374-71007393 | None:intergenic | 30.0% |
| ! | AGCATTGAAAAAAGCTATCA+TGG | + | chr3.2:71008963-71008982 | None:intergenic | 30.0% |
| ! | CAGACTTACTTTGAGAAAAA+TGG | + | chr3.2:71008204-71008223 | None:intergenic | 30.0% |
| ! | CCATCATAATTATTGGTAAC+CGG | + | chr3.2:71005969-71005988 | None:intergenic | 30.0% |
| ! | CCATTTTGTATAGGCTTATT+GGG | - | chr3.2:71006792-71006811 | MS.gene25766:intron | 30.0% |
| ! | TCCATTTTGTATAGGCTTAT+TGG | - | chr3.2:71006791-71006810 | MS.gene25766:intron | 30.0% |
| ! | TCTAAAGTACCTGTGAATAA+TGG | + | chr3.2:71008008-71008027 | None:intergenic | 30.0% |
| !! | GGACATGTATTTTGAAAAAG+AGG | + | chr3.2:71006956-71006975 | None:intergenic | 30.0% |
| !!! | GCACATATTGATTTTATAGC+GGG | - | chr3.2:71008908-71008927 | MS.gene25766:CDS | 30.0% |
| !!! | TCCCTTTTTTCTAATGTAAC+AGG | - | chr3.2:71007751-71007770 | MS.gene25766:intron | 30.0% |
| AAGACTATAGTAGAGACACA+AGG | - | chr3.2:71005996-71006015 | MS.gene25766:CDS | 35.0% | |
| ATCAAATTCTTTGTTGCGGT+TGG | + | chr3.2:71008181-71008200 | None:intergenic | 35.0% | |
| ATCTGATGTACAAGATGTGA+AGG | - | chr3.2:71008817-71008836 | MS.gene25766:CDS | 35.0% | |
| ATTCTAATGAGCAGGGATAT+TGG | - | chr3.2:71007921-71007940 | MS.gene25766:intron | 35.0% | |
| CAATTCTCCAGAAGAATCAT+TGG | - | chr3.2:71006572-71006591 | MS.gene25766:intron | 35.0% | |
| CAGATATTGGATTTGATGTG+TGG | - | chr3.2:71006607-71006626 | MS.gene25766:intron | 35.0% | |
| CCCAATAAGCCTATACAAAA+TGG | + | chr3.2:71006795-71006814 | None:intergenic | 35.0% | |
| CCGGTTACCAATAATTATGA+TGG | - | chr3.2:71005966-71005985 | MS.gene25766:CDS | 35.0% | |
| TAGCATCATGGTCATTATTG+AGG | + | chr3.2:71008856-71008875 | None:intergenic | 35.0% | |
| TAGTAGAGACACAAGGTTAT+AGG | - | chr3.2:71006003-71006022 | MS.gene25766:CDS | 35.0% | |
| TGCTCAAATTTCATAGAGTC+AGG | + | chr3.2:71008645-71008664 | None:intergenic | 35.0% | |
| TGGAGAATTGAACAACCATA+CGG | + | chr3.2:71006562-71006581 | None:intergenic | 35.0% | |
| TTCTCAAAGTAAGTCTGTCA+AGG | - | chr3.2:71008207-71008226 | MS.gene25766:CDS | 35.0% | |
| TTGAGGTTCATGATCAAGAT+AGG | + | chr3.2:71008158-71008177 | None:intergenic | 35.0% | |
| TTGTATAGGCTTATTGGGAT+TGG | - | chr3.2:71006797-71006816 | MS.gene25766:intron | 35.0% | |
| TTTGATGTGTGGCTTATCAA+TGG | - | chr3.2:71006618-71006637 | MS.gene25766:intron | 35.0% | |
| ! | ATAATTATTGGTAACCGGAG+AGG | + | chr3.2:71005964-71005983 | None:intergenic | 35.0% |
| ! | GCAATTTTTGTTAACTCGGA+AGG | + | chr3.2:71007370-71007389 | None:intergenic | 35.0% |
| ! | TAATTATTGGTAACCGGAGA+GGG | + | chr3.2:71005963-71005982 | None:intergenic | 35.0% |
| ! | TGGTTATGTCATAAGTTGGA+GGG | + | chr3.2:71008745-71008764 | None:intergenic | 35.0% |
| ! | TTGGTTATGTCATAAGTTGG+AGG | + | chr3.2:71008746-71008765 | None:intergenic | 35.0% |
| !! | AGAAAAAAGTGGTATTGGCA+CGG | - | chr3.2:71007588-71007607 | MS.gene25766:intron | 35.0% |
| !!! | CTCTTTTTAGCTAATGTGAG+TGG | - | chr3.2:71007397-71007416 | MS.gene25766:intron | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr3.2:71007184-71007203 | MS.gene25766:intron | 35.0% |
| ACCATCATCTGTTGTAACCT+AGG | + | chr3.2:71006215-71006234 | None:intergenic | 40.0% | |
| ACCTAGGTTACAACAGATGA+TGG | - | chr3.2:71006211-71006230 | MS.gene25766:intron | 40.0% | |
| AGAAAAAGGGGGAATTCACT+AGG | + | chr3.2:71008773-71008792 | None:intergenic | 40.0% | |
| AGACCGTGTTGGATTAATAC+AGG | + | chr3.2:71006298-71006317 | None:intergenic | 40.0% | |
| ATAAACGGTTTGTGCAGTTG+AGG | + | chr3.2:71007983-71008002 | None:intergenic | 40.0% | |
| ATACATTGGCATGTGTGAAG+TGG | + | chr3.2:71006986-71007005 | None:intergenic | 40.0% | |
| ATCACTAAGTCCCAATGACA+TGG | - | chr3.2:71006671-71006690 | MS.gene25766:CDS | 40.0% | |
| ATTTGAGCAGTGATCAGATC+AGG | - | chr3.2:71008656-71008675 | MS.gene25766:intron | 40.0% | |
| CATCCTTGAACAATACCACA+CGG | + | chr3.2:71008883-71008902 | None:intergenic | 40.0% | |
| CCTCCTGTATTAATCCAACA+CGG | - | chr3.2:71006292-71006311 | MS.gene25766:intron | 40.0% | |
| CTTTGCACGAAACTCTTAAG+CGG | + | chr3.2:71006496-71006515 | None:intergenic | 40.0% | |
| GAAAAAGGGGGAATTCACTA+GGG | + | chr3.2:71008772-71008791 | None:intergenic | 40.0% | |
| TAAACGGTTTGTGCAGTTGA+GGG | + | chr3.2:71007982-71008001 | None:intergenic | 40.0% | |
| TCAAAGTAAGTCTGTCAAGG+AGG | - | chr3.2:71008210-71008229 | MS.gene25766:CDS | 40.0% | |
| TCCTCCATAGCTGAGAAAAA+GGG | + | chr3.2:71008786-71008805 | None:intergenic | 40.0% | |
| TGGTTATGATCTACCTGCTT+CGG | - | chr3.2:71006837-71006856 | MS.gene25766:CDS | 40.0% | |
| TTACACAAAAGAGACCGTGT+TGG | + | chr3.2:71006309-71006328 | None:intergenic | 40.0% | |
| ! | CTTAAGCGGTGACAAGATTT+TGG | + | chr3.2:71006482-71006501 | None:intergenic | 40.0% |
| ! | CTTGAGTGATCACGAGATTT+TGG | - | chr3.2:71006383-71006402 | MS.gene25766:intron | 40.0% |
| !! | ATCACGAGATTTTGGTCACA+AGG | - | chr3.2:71006391-71006410 | MS.gene25766:intron | 40.0% |
| !! | GAGATTTTGGTCACAAGGTT+CGG | - | chr3.2:71006396-71006415 | MS.gene25766:intron | 40.0% |
| !!! | GCTTTTGCTGCTTTATCTCA+AGG | - | chr3.2:71007280-71007299 | MS.gene25766:intron | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr3.2:71007183-71007202 | MS.gene25766:intron | 40.0% |
| !!! | TGAATTTTTTGCACCCTCTC+CGG | - | chr3.2:71005947-71005966 | MS.gene25766:CDS | 40.0% |
| ACGCATGTGGAACGAATTCA+CGG | + | chr3.2:71007796-71007815 | None:intergenic | 45.0% | |
| ACGGTTCGAATCTCAAAAGC+AGG | - | chr3.2:71008334-71008353 | MS.gene25766:intron | 45.0% | |
| CAACCGTGTGGTATTGTTCA+AGG | - | chr3.2:71008877-71008896 | MS.gene25766:CDS | 45.0% | |
| CATGTGTGAAGTGGTTGACT+TGG | + | chr3.2:71006977-71006996 | None:intergenic | 45.0% | |
| CATTGGGACTTAGTGATGTG+TGG | + | chr3.2:71006668-71006687 | None:intergenic | 45.0% | |
| CCGTGTTGGATTAATACAGG+AGG | + | chr3.2:71006295-71006314 | None:intergenic | 45.0% | |
| CCTCCATAGCTGAGAAAAAG+GGG | + | chr3.2:71008785-71008804 | None:intergenic | 45.0% | |
| CGTGTAAATGGAATGCAGCA+TGG | + | chr3.2:71006059-71006078 | None:intergenic | 45.0% | |
| CTCCATAGCTGAGAAAAAGG+GGG | + | chr3.2:71008784-71008803 | None:intergenic | 45.0% | |
| GCATTATGTCGGTCATTCTC+AGG | - | chr3.2:71006894-71006913 | MS.gene25766:intron | 45.0% | |
| GTCCTCCATAGCTGAGAAAA+AGG | + | chr3.2:71008787-71008806 | None:intergenic | 45.0% | |
| TATTTCAGGATGCTGCCGTA+TGG | - | chr3.2:71006544-71006563 | MS.gene25766:intron | 45.0% | |
| TGGTCATGGGATGAATTAGC+TGG | - | chr3.2:71006817-71006836 | MS.gene25766:intron | 45.0% | |
| TTCACATATTGTGCCGAAGC+AGG | + | chr3.2:71006853-71006872 | None:intergenic | 45.0% | |
| ! | GGGGAATTCACTAGGGATTT+TGG | + | chr3.2:71008765-71008784 | None:intergenic | 45.0% |
| ! | TTCCCCCTTTTTCTCAGCTA+TGG | - | chr3.2:71008779-71008798 | MS.gene25766:intron | 45.0% |
| ! | TTCTTTGTTGCGGTTGGTTG+AGG | + | chr3.2:71008175-71008194 | None:intergenic | 45.0% |
| ! | TTTTGCATTGCAGCAGCACA+AGG | - | chr3.2:71005900-71005919 | MS.gene25766:CDS | 45.0% |
| !! | AGGCTTATTGGGATTGGTCA+TGG | - | chr3.2:71006803-71006822 | MS.gene25766:intron | 45.0% |
| !! | GGCTTATTGGGATTGGTCAT+GGG | - | chr3.2:71006804-71006823 | MS.gene25766:intron | 45.0% |
| AGGGAGGTCTGGTAAGAAAG+CGG | - | chr3.2:71006264-71006283 | MS.gene25766:intron | 50.0% | |
| CATGTGGAACGAATTCACGG+AGG | + | chr3.2:71007793-71007812 | None:intergenic | 50.0% | |
| GGGACTTAGTGATGTGTGGT+TGG | + | chr3.2:71006664-71006683 | None:intergenic | 50.0% | |
| GTGTGGCTTATCAATGGTCG+AGG | - | chr3.2:71006624-71006643 | MS.gene25766:intron | 50.0% | |
| GTTACATCTTGAGCCTGCAG+AGG | - | chr3.2:71006233-71006252 | MS.gene25766:intron | 50.0% | |
| TTCTTACCAGACCTCCCTAC+CGG | + | chr3.2:71006262-71006281 | None:intergenic | 50.0% | |
| ! | CCCCTTTTTCTCAGCTATGG+AGG | - | chr3.2:71008782-71008801 | MS.gene25766:intron | 50.0% |
| CCACACGGTTGCTAGCATCA+TGG | + | chr3.2:71008868-71008887 | None:intergenic | 55.0% | |
| CCATGATGCTAGCAACCGTG+TGG | - | chr3.2:71008865-71008884 | MS.gene25766:CDS | 55.0% | |
| TCTTACCAGACCTCCCTACC+GGG | + | chr3.2:71006261-71006280 | None:intergenic | 55.0% | |
| CTTGAGCCTGCAGAGGATCC+CGG | - | chr3.2:71006240-71006259 | MS.gene25766:intron | 60.0% | |
| AGCCTGCAGAGGATCCCGGT+AGG | - | chr3.2:71006244-71006263 | MS.gene25766:intron | 65.0% | |
| AGGATCCCGGTAGGGAGGTC+TGG | - | chr3.2:71006253-71006272 | MS.gene25766:intron | 65.0% | |
| GCCTGCAGAGGATCCCGGTA+GGG | - | chr3.2:71006245-71006264 | MS.gene25766:intron | 65.0% | |
| TCCCTACCGGGATCCTCTGC+AGG | + | chr3.2:71006249-71006268 | None:intergenic | 65.0% | |
| TGCAGAGGATCCCGGTAGGG+AGG | - | chr3.2:71006248-71006267 | MS.gene25766:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71005852 | 71008988 | 71005852 | ID=MS.gene25766 |
| chr3.2 | mRNA | 71005852 | 71008988 | 71005852 | ID=MS.gene25766.t1;Parent=MS.gene25766 |
| chr3.2 | exon | 71008800 | 71008988 | 71008800 | ID=MS.gene25766.t1.exon1;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71008800 | 71008988 | 71008800 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71008516 | 71008623 | 71008516 | ID=MS.gene25766.t1.exon2;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71008516 | 71008623 | 71008516 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71008148 | 71008288 | 71008148 | ID=MS.gene25766.t1.exon3;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71008148 | 71008288 | 71008148 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71007925 | 71008035 | 71007925 | ID=MS.gene25766.t1.exon4;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71007925 | 71008035 | 71007925 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71007429 | 71007572 | 71007429 | ID=MS.gene25766.t1.exon5;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71007429 | 71007572 | 71007429 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71007027 | 71007067 | 71007027 | ID=MS.gene25766.t1.exon6;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71007027 | 71007067 | 71007027 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71006823 | 71006905 | 71006823 | ID=MS.gene25766.t1.exon7;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71006823 | 71006905 | 71006823 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71006626 | 71006721 | 71006626 | ID=MS.gene25766.t1.exon8;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71006626 | 71006721 | 71006626 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| chr3.2 | exon | 71005852 | 71006174 | 71005852 | ID=MS.gene25766.t1.exon9;Parent=MS.gene25766.t1 |
| chr3.2 | CDS | 71005852 | 71006174 | 71005852 | ID=cds.MS.gene25766.t1;Parent=MS.gene25766.t1 |
| Gene Sequence |
| Protein sequence |
