AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053479


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053479.t1 MTR_4g086480 98.131 321 6 0 1 321 1 321 0.0 655
MS.gene053479.t1 MTR_4g086470 82.555 321 55 1 1 321 1 320 0.0 542
MS.gene053479.t1 MTR_4g086510 63.240 321 111 3 1 318 1 317 2.91e-158 445
MS.gene053479.t1 MTR_7g056207 61.587 315 118 2 10 321 38 352 4.06e-151 428
MS.gene053479.t1 MTR_3g450680 43.293 328 175 6 2 319 6 332 6.55e-92 277
MS.gene053479.t1 MTR_3g101420 42.593 324 170 5 1 318 1 314 1.28e-90 273
MS.gene053479.t1 MTR_5g005850 41.033 329 180 8 1 318 3 328 1.49e-90 273
MS.gene053479.t1 MTR_4g086540 44.127 315 156 4 4 318 10 304 3.62e-90 272
MS.gene053479.t1 MTR_1g105020 43.293 328 170 9 1 318 1 322 2.34e-87 265
MS.gene053479.t1 MTR_8g040860 42.902 317 171 7 11 319 15 329 3.33e-84 257
MS.gene053479.t1 MTR_5g005920 40.541 333 182 10 1 319 1 331 3.38e-81 249
MS.gene053479.t1 MTR_7g051020 39.877 326 187 6 1 318 1 325 2.04e-74 232
MS.gene053479.t1 MTR_1g104930 42.025 326 177 7 1 318 1 322 5.99e-74 231
MS.gene053479.t1 MTR_5g005900 40.244 328 179 8 5 318 2 326 6.06e-74 231
MS.gene053479.t1 MTR_1g104933 44.928 276 141 6 49 318 46 316 5.89e-67 213
MS.gene053479.t1 MTR_1g012430 36.808 307 178 8 20 319 11 308 6.05e-53 176
MS.gene053479.t1 MTR_4g050140 33.832 334 183 9 5 319 2 316 3.42e-52 174
MS.gene053479.t1 MTR_1g111280 34.483 290 175 4 12 289 26 312 5.91e-49 167
MS.gene053479.t1 MTR_7g406880 31.023 303 186 8 19 300 28 328 2.73e-42 149
MS.gene053479.t1 MTR_7g107040 30.794 315 205 7 12 318 7 316 2.46e-41 146
MS.gene053479.t1 MTR_1g102160 33.333 279 162 7 20 280 19 291 1.40e-40 144
MS.gene053479.t1 MTR_3g012440 30.996 271 172 4 62 319 73 341 2.53e-39 142
MS.gene053479.t1 MTR_6g464120 35.857 251 150 6 20 263 24 270 1.38e-38 143
MS.gene053479.t1 MTR_8g035520 31.935 310 198 6 20 320 21 326 4.93e-38 138
MS.gene053479.t1 MTR_6g464280 33.808 281 159 10 39 301 38 309 2.17e-36 133
MS.gene053479.t1 MTR_6g464320 31.544 298 175 12 39 318 39 325 3.67e-36 133
MS.gene053479.t1 MTR_6g065430 32.990 291 177 7 37 318 46 327 9.18e-36 132
MS.gene053479.t1 MTR_8g035540 31.661 319 193 9 20 321 9 319 2.92e-35 130
MS.gene053479.t1 MTR_1g089310 32.937 252 149 8 74 318 118 356 4.33e-35 130
MS.gene053479.t1 MTR_6g065110 30.690 290 178 6 43 318 54 334 4.40e-35 130
MS.gene053479.t1 MTR_1g089310 32.937 252 149 8 74 318 102 340 4.53e-35 130
MS.gene053479.t1 MTR_6g065120 31.186 295 179 6 39 318 50 335 5.64e-35 130
MS.gene053479.t1 MTR_6g065400 30.612 294 181 6 39 318 49 333 4.20e-34 127
MS.gene053479.t1 MTR_6g464510 31.068 309 182 10 28 318 31 326 4.86e-34 127
MS.gene053479.t1 MTR_0007s0520 30.097 309 189 8 26 318 27 324 1.32e-33 126
MS.gene053479.t1 MTR_7g093950 31.538 260 147 9 74 318 103 346 2.55e-33 125
MS.gene053479.t1 MTR_6g065340 30.345 290 171 6 39 318 60 328 4.13e-33 125
MS.gene053479.t1 MTR_1g102170 30.795 302 175 10 6 288 22 308 4.52e-33 125
MS.gene053479.t1 MTR_6g065270 30.435 299 179 8 39 318 47 335 6.17e-33 124
MS.gene053479.t1 MTR_6g065370 30.612 294 181 6 39 318 49 333 7.95e-33 124
MS.gene053479.t1 MTR_8g035500 31.225 253 161 5 39 280 33 283 1.00e-31 121
MS.gene053479.t1 MTR_1g082210 28.808 302 181 11 37 318 53 340 3.05e-30 117
MS.gene053479.t1 MTR_6g022710 26.336 262 149 10 75 297 158 414 1.05e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053479.t1 AT1G47480 48.438 320 152 5 1 318 1 309 2.76e-103 305
MS.gene053479.t1 AT3G48690 48.758 322 156 6 8 320 1 322 3.33e-103 305
MS.gene053479.t1 AT2G03550 46.965 313 161 4 8 318 1 310 9.20e-102 301
MS.gene053479.t1 AT1G19190 46.688 317 161 5 8 319 1 314 5.80e-101 300
MS.gene053479.t1 AT3G48700 45.152 330 161 7 8 320 1 327 2.64e-100 298
MS.gene053479.t1 AT1G49660 47.962 319 160 5 8 320 1 319 5.34e-96 287
MS.gene053479.t1 AT1G49650 45.955 309 160 6 18 320 67 374 7.65e-93 281
MS.gene053479.t1 AT1G49640 44.805 308 157 7 18 318 12 313 3.24e-87 265
MS.gene053479.t1 AT1G68620 32.593 270 170 5 5 267 16 280 2.44e-42 149
MS.gene053479.t1 AT5G16080 30.599 317 192 10 12 314 28 330 1.54e-39 142
MS.gene053479.t1 AT5G06570 31.348 319 206 7 11 318 9 325 2.85e-39 141
MS.gene053479.t1 AT5G06570 31.348 319 206 7 11 318 9 325 2.85e-39 141
MS.gene053479.t1 AT5G06570 31.661 319 205 7 11 318 24 340 5.41e-39 140
MS.gene053479.t1 AT5G06570 31.661 319 205 7 11 318 24 340 5.41e-39 140
MS.gene053479.t1 AT2G45600 30.255 314 196 8 20 321 16 318 1.74e-35 131
MS.gene053479.t1 AT2G45610 31.741 293 180 8 39 318 38 323 2.35e-33 125
MS.gene053479.t1 AT5G27320 27.815 302 187 9 37 320 53 341 1.79e-32 123
MS.gene053479.t1 AT3G05120 28.094 299 182 10 42 320 58 343 3.31e-31 120
MS.gene053479.t1 AT3G63010 31.746 252 152 8 74 318 103 341 8.33e-31 119
MS.gene053479.t1 AT5G23530 30.345 290 179 9 38 318 51 326 3.50e-30 117
MS.gene053479.t1 AT5G62180 30.403 273 166 7 39 296 38 301 2.17e-28 112

Find 77 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAAAGATTCATAATTTA+TGG 0.132943 4.3:-26472022 MS.gene053479:CDS
CCGGCTAATGATCCGGATTT+AGG 0.179355 4.3:-26471951 MS.gene053479:CDS
TCGGGTCGGGAAGGAAAATT+TGG 0.248520 4.3:-26472135 MS.gene053479:CDS
TTGCACACCATTTAAGTATT+CGG 0.264356 4.3:-26472154 MS.gene053479:CDS
ACGTCACTTGCTAACGTTAT+TGG 0.270804 4.3:-26472356 MS.gene053479:CDS
TGCACACCATTTAAGTATTC+GGG 0.314345 4.3:-26472153 MS.gene053479:CDS
TTAAGGTAGTTATGGTAGTT+TGG 0.317173 4.3:+26472386 None:intergenic
TCCCGACCCGAATACTTAAA+TGG 0.338222 4.3:+26472147 None:intergenic
GGATAGGGGTTGGTATTATA+AGG 0.344213 4.3:-26471874 MS.gene053479:CDS
TGCTGAGATGTTATGTTCTT+CGG 0.344889 4.3:+26472508 None:intergenic
CGGCTAATGATCCGGATTTA+GGG 0.349677 4.3:-26471950 MS.gene053479:CDS
GCTTCACATGTTGGTGGAAA+TGG 0.350595 4.3:-26472251 MS.gene053479:CDS
ATTCATGGCTTGCACTCAAA+TGG 0.361551 4.3:-26472277 MS.gene053479:CDS
CCACAGGTCATGAAGATTCA+TGG 0.368089 4.3:-26472292 MS.gene053479:CDS
AGATTGCTTATTTGTGTTGC+TGG 0.381182 4.3:-26471912 MS.gene053479:CDS
CCTCTTCTTGTTTACATCCA+TGG 0.387855 4.3:-26472440 MS.gene053479:CDS
TTGGATGGTTTGAAACTTGA+AGG 0.392629 4.3:-26472116 MS.gene053479:CDS
GGTCGTGTTCAGAGACTTGC+AGG 0.405326 4.3:-26472596 MS.gene053479:CDS
TTATGGTAGTTTGGTGAGAA+AGG 0.405757 4.3:+26472395 None:intergenic
TTTGCATGTCCAACGACGAC+TGG 0.416154 4.3:-26471996 MS.gene053479:CDS
CCTGTGGGAACAGGATGTTC+TGG 0.428855 4.3:+26472308 None:intergenic
TGATCCGGATTTAGGGAAGT+TGG 0.432809 4.3:-26471943 MS.gene053479:CDS
GATCCGGATTTAGGGAAGTT+GGG 0.438488 4.3:-26471942 MS.gene053479:CDS
GATTAACCCGGCTAATGATC+CGG 0.463961 4.3:-26471958 MS.gene053479:CDS
CCTAAATCCGGATCATTAGC+CGG 0.464898 4.3:+26471951 None:intergenic
CATTAGCCGGGTTAATCAAC+GGG 0.468907 4.3:+26471964 None:intergenic
CTTTGATGAAGGAAACAACT+TGG 0.469524 4.3:+26471736 None:intergenic
ACCATTTAAGTATTCGGGTC+GGG 0.470145 4.3:-26472148 MS.gene053479:CDS
GTTCTTAAATTATACAAAAG+TGG 0.472355 4.3:-26472617 MS.gene053479:CDS
TTCATGGCTTGCACTCAAAT+GGG 0.480049 4.3:-26472276 MS.gene053479:CDS
CAACCCAACTTCCCTAAATC+CGG 0.480659 4.3:+26471939 None:intergenic
TTATCAAGCACCTTTGATGA+AGG 0.483279 4.3:+26471725 None:intergenic
TCTTCATGACCTGTGGGAAC+AGG 0.484442 4.3:+26472299 None:intergenic
CAAGTTGTTTCCTTCATCAA+AGG 0.484994 4.3:-26471735 MS.gene053479:CDS
AAGGAATTGCTTGAGAAAAG+TGG 0.485220 4.3:-26471855 MS.gene053479:CDS
TAACAGAGTTAAGGTAGTTA+TGG 0.485717 4.3:+26472378 None:intergenic
CTAAATCCGGATCATTAGCC+GGG 0.489707 4.3:+26471952 None:intergenic
ATTGCTTGAGAAAAGTGGTT+GGG 0.500668 4.3:-26471850 MS.gene053479:CDS
TTCATCGTCGATGGTGGAGG+AGG 0.507650 4.3:+26472661 None:intergenic
CGGGTTAATCAACGGGTCAT+CGG 0.507916 4.3:+26471971 None:intergenic
AAGTGGTTGGGGTGGTGCTG+TGG 0.512617 4.3:-26471838 MS.gene053479:CDS
TTGCTTGAGAAAAGTGGTTG+GGG 0.513691 4.3:-26471849 MS.gene053479:CDS
CAAGTGACGTAACAGAGTTA+AGG 0.515765 4.3:+26472369 None:intergenic
TACTTCATCGTCGATGGTGG+AGG 0.523560 4.3:+26472658 None:intergenic
GATTGCTTATTTGTGTTGCT+GGG 0.526972 4.3:-26471911 MS.gene053479:CDS
TTCATAGGAGGTGATAGTGC+TGG 0.528280 4.3:-26472185 MS.gene053479:CDS
TGGATGGTTTGAAACTTGAA+GGG 0.541623 4.3:-26472115 MS.gene053479:CDS
GTGGAAATGGCTCTGATGAA+TGG 0.542774 4.3:-26472238 MS.gene053479:CDS
TGTTCAGAGACTTGCAGGTA+CGG 0.552280 4.3:-26472591 MS.gene053479:CDS
GGCTACTTCATCGTCGATGG+TGG 0.554184 4.3:+26472655 None:intergenic
AACGGCTACTTCATCGTCGA+TGG 0.565230 4.3:+26472652 None:intergenic
CACCATTTAAGTATTCGGGT+CGG 0.566021 4.3:-26472149 MS.gene053479:CDS
GTCGGGAAGGAAAATTTGGA+TGG 0.567129 4.3:-26472131 MS.gene053479:CDS
CCATGGATGTAAACAAGAAG+AGG 0.571505 4.3:+26472440 None:intergenic
ACCGCAGCATTGTCACATGT+TGG 0.575233 4.3:+26471768 None:intergenic
CCATGAATCTTCATGACCTG+TGG 0.577389 4.3:+26472292 None:intergenic
AAATGGGTTGCTTCACATGT+TGG 0.579541 4.3:-26472260 MS.gene053479:CDS
TCATTAGCCGGGTTAATCAA+CGG 0.581749 4.3:+26471963 None:intergenic
TCATCGGATCCAGTCGTCGT+TGG 0.581912 4.3:+26471987 None:intergenic
AAGAACTGGGGTTAGATCAA+CGG 0.586206 4.3:+26472634 None:intergenic
CTTCTTGTTTACATCCATGG+TGG 0.596392 4.3:-26472437 MS.gene053479:CDS
TTTAAGTATTCGGGTCGGGA+AGG 0.597599 4.3:-26472144 MS.gene053479:CDS
AACATCTTTAGATTCAACGT+TGG 0.601272 4.3:+26472538 None:intergenic
CGATGACCCGTTGATTAACC+CGG 0.602163 4.3:-26471970 MS.gene053479:CDS
AATTGCTTGAGAAAAGTGGT+TGG 0.605106 4.3:-26471851 MS.gene053479:CDS
CATGAATCTTCATGACCTGT+GGG 0.605733 4.3:+26472293 None:intergenic
GGTGGAGGAGGTTGAATCCA+TGG 0.605959 4.3:+26472673 None:intergenic
TTTGTATAATTTAAGAACTG+GGG 0.616246 4.3:+26472622 None:intergenic
TGGGTTGCTTCACATGTTGG+TGG 0.616285 4.3:-26472257 MS.gene053479:CDS
TGCTGTGGAAGTGATTGAAA+CGG 0.632909 4.3:-26471823 MS.gene053479:CDS
CATGGATGTAAACAAGAAGA+GGG 0.633400 4.3:+26472441 None:intergenic
CCAGAACATCCTGTTCCCAC+AGG 0.635506 4.3:-26472308 MS.gene053479:CDS
CTTGAGAAAAGTGGTTGGGG+TGG 0.652240 4.3:-26471846 MS.gene053479:CDS
ACCAACATGTGACAATGCTG+CGG 0.661762 4.3:-26471769 MS.gene053479:CDS
ATAGGAGGTGATAGTGCTGG+TGG 0.662743 4.3:-26472182 MS.gene053479:CDS
CAATGCAGAAAGCACCACCA+TGG 0.688801 4.3:+26472423 None:intergenic
TGTGGAAGTGATTGAAACGG+AGG 0.722544 4.3:-26471820 MS.gene053479:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAAGATTCATAATTTA+TGG - chr4.3:26472377-26472396 MS.gene053479:CDS 15.0%
!!! TTATATTCATCCTTATTTTT+GGG - chr4.3:26472312-26472331 MS.gene053479:CDS 15.0%
!!! TTTATATTCATCCTTATTTT+TGG - chr4.3:26472311-26472330 MS.gene053479:CDS 15.0%
!!! TTTTGTATAATTTAAGAACT+GGG + chr4.3:26471781-26471800 None:intergenic 15.0%
!! GTTCTTAAATTATACAAAAG+TGG - chr4.3:26471782-26471801 MS.gene053479:CDS 20.0%
!! TTTGTATAATTTAAGAACTG+GGG + chr4.3:26471780-26471799 None:intergenic 20.0%
!!! CTTTTGTATAATTTAAGAAC+TGG + chr4.3:26471782-26471801 None:intergenic 20.0%
!!! TATATTCATCCTTATTTTTG+GGG - chr4.3:26472313-26472332 MS.gene053479:CDS 20.0%
!!! GATTTTGAGAAAGTTTTCAT+AGG - chr4.3:26472199-26472218 MS.gene053479:CDS 25.0%
AACATCTTTAGATTCAACGT+TGG + chr4.3:26471864-26471883 None:intergenic 30.0%
TAACAGAGTTAAGGTAGTTA+TGG + chr4.3:26472024-26472043 None:intergenic 30.0%
TTAAGGTAGTTATGGTAGTT+TGG + chr4.3:26472016-26472035 None:intergenic 30.0%
TTGCACACCATTTAAGTATT+CGG - chr4.3:26472245-26472264 MS.gene053479:CDS 30.0%
! TTTGAGAAAGTTTTCATAGG+AGG - chr4.3:26472202-26472221 MS.gene053479:CDS 30.0%
!! CAAGATATTTTGAAGGATAG+GGG - chr4.3:26472511-26472530 MS.gene053479:CDS 30.0%
!! GCAAGATATTTTGAAGGATA+GGG - chr4.3:26472510-26472529 MS.gene053479:CDS 30.0%
!!! TTAGATTCAACGTTGGTTTT+AGG + chr4.3:26471857-26471876 None:intergenic 30.0%
AAGGAATTGCTTGAGAAAAG+TGG - chr4.3:26472544-26472563 MS.gene053479:CDS 35.0%
AATTGCTTGAGAAAAGTGGT+TGG - chr4.3:26472548-26472567 MS.gene053479:CDS 35.0%
AGATTGCTTATTTGTGTTGC+TGG - chr4.3:26472487-26472506 MS.gene053479:CDS 35.0%
ATTGCTTGAGAAAAGTGGTT+GGG - chr4.3:26472549-26472568 MS.gene053479:CDS 35.0%
CATGGATGTAAACAAGAAGA+GGG + chr4.3:26471961-26471980 None:intergenic 35.0%
CTTTGATGAAGGAAACAACT+TGG + chr4.3:26472666-26472685 None:intergenic 35.0%
TGCACACCATTTAAGTATTC+GGG - chr4.3:26472246-26472265 MS.gene053479:CDS 35.0%
TGCTGAGATGTTATGTTCTT+CGG + chr4.3:26471894-26471913 None:intergenic 35.0%
! AAACAAGAAGAGGGAGTTTT+TGG + chr4.3:26471952-26471971 None:intergenic 35.0%
! AACAAGAAGAGGGAGTTTTT+GGG + chr4.3:26471951-26471970 None:intergenic 35.0%
! CAAGTTGTTTCCTTCATCAA+AGG - chr4.3:26472664-26472683 MS.gene053479:CDS 35.0%
! GATTGCTTATTTGTGTTGCT+GGG - chr4.3:26472488-26472507 MS.gene053479:CDS 35.0%
! TGGATGGTTTGAAACTTGAA+GGG - chr4.3:26472284-26472303 MS.gene053479:CDS 35.0%
! TTATGGTAGTTTGGTGAGAA+AGG + chr4.3:26472007-26472026 None:intergenic 35.0%
! TTGGATGGTTTGAAACTTGA+AGG - chr4.3:26472283-26472302 MS.gene053479:CDS 35.0%
!! ATATTTTGAAGGATAGGGGT+TGG - chr4.3:26472515-26472534 MS.gene053479:CDS 35.0%
!! GGCAAGATATTTTGAAGGAT+AGG - chr4.3:26472509-26472528 MS.gene053479:CDS 35.0%
!!! TTGGTTTTAGGATCAAGAGA+TGG + chr4.3:26471845-26471864 None:intergenic 35.0%
AAGAACTGGGGTTAGATCAA+CGG + chr4.3:26471768-26471787 None:intergenic 40.0%
ACCATTTAAGTATTCGGGTC+GGG - chr4.3:26472251-26472270 MS.gene053479:CDS 40.0%
CAAGTGACGTAACAGAGTTA+AGG + chr4.3:26472033-26472052 None:intergenic 40.0%
CACCATTTAAGTATTCGGGT+CGG - chr4.3:26472250-26472269 MS.gene053479:CDS 40.0%
CATGAATCTTCATGACCTGT+GGG + chr4.3:26472109-26472128 None:intergenic 40.0%
CCATGGATGTAAACAAGAAG+AGG + chr4.3:26471962-26471981 None:intergenic 40.0%
CGATCTACACCCCAAAAATA+AGG + chr4.3:26472325-26472344 None:intergenic 40.0%
TCATTAGCCGGGTTAATCAA+CGG + chr4.3:26472439-26472458 None:intergenic 40.0%
TGCTGTGGAAGTGATTGAAA+CGG - chr4.3:26472576-26472595 MS.gene053479:CDS 40.0%
TTGCTTGAGAAAAGTGGTTG+GGG - chr4.3:26472550-26472569 MS.gene053479:CDS 40.0%
! ACGTCACTTGCTAACGTTAT+TGG - chr4.3:26472043-26472062 MS.gene053479:CDS 40.0%
! ATTCATGGCTTGCACTCAAA+TGG - chr4.3:26472122-26472141 MS.gene053479:CDS 40.0%
! CCTCTTCTTGTTTACATCCA+TGG - chr4.3:26471959-26471978 MS.gene053479:CDS 40.0%
! CTTCTTGTTTACATCCATGG+TGG - chr4.3:26471962-26471981 MS.gene053479:CDS 40.0%
! TTCATGGCTTGCACTCAAAT+GGG - chr4.3:26472123-26472142 MS.gene053479:CDS 40.0%
!! AAATGGGTTGCTTCACATGT+TGG - chr4.3:26472139-26472158 MS.gene053479:CDS 40.0%
!! GGATAGGGGTTGGTATTATA+AGG - chr4.3:26472525-26472544 MS.gene053479:CDS 40.0%
!! TGCTGGGCAAGATATTTTGA+AGG - chr4.3:26472504-26472523 MS.gene053479:CDS 40.0%
!!! GTTGGTGGGTAATTGGTTTT+TGG + chr4.3:26471929-26471948 None:intergenic 40.0%
!!! GTTTTAGGATCAAGAGATGG+AGG + chr4.3:26471842-26471861 None:intergenic 40.0%
!!! TTTTGGGGTGTAGATCGAAT+TGG - chr4.3:26472328-26472347 MS.gene053479:CDS 40.0%
!!! TTTTTGGGTTGGTGGGTAAT+TGG + chr4.3:26471936-26471955 None:intergenic 40.0%
ACCAACATGTGACAATGCTG+CGG - chr4.3:26472630-26472649 MS.gene053479:CDS 45.0%
CAACCCAACTTCCCTAAATC+CGG + chr4.3:26472463-26472482 None:intergenic 45.0%
CATTAGCCGGGTTAATCAAC+GGG + chr4.3:26472438-26472457 None:intergenic 45.0%
CCACAGGTCATGAAGATTCA+TGG - chr4.3:26472107-26472126 MS.gene053479:CDS 45.0%
CCATGAATCTTCATGACCTG+TGG + chr4.3:26472110-26472129 None:intergenic 45.0%
CCTAAATCCGGATCATTAGC+CGG + chr4.3:26472451-26472470 None:intergenic 45.0%
CGGCTAATGATCCGGATTTA+GGG - chr4.3:26472449-26472468 MS.gene053479:CDS 45.0%
CTAAATCCGGATCATTAGCC+GGG + chr4.3:26472450-26472469 None:intergenic 45.0%
GATCCGGATTTAGGGAAGTT+GGG - chr4.3:26472457-26472476 MS.gene053479:CDS 45.0%
GATTAACCCGGCTAATGATC+CGG - chr4.3:26472441-26472460 MS.gene053479:CDS 45.0%
GTCGGGAAGGAAAATTTGGA+TGG - chr4.3:26472268-26472287 MS.gene053479:CDS 45.0%
TCCCGACCCGAATACTTAAA+TGG + chr4.3:26472255-26472274 None:intergenic 45.0%
TGATCCGGATTTAGGGAAGT+TGG - chr4.3:26472456-26472475 MS.gene053479:CDS 45.0%
TGTGGAAGTGATTGAAACGG+AGG - chr4.3:26472579-26472598 MS.gene053479:CDS 45.0%
TGTTCAGAGACTTGCAGGTA+CGG - chr4.3:26471808-26471827 MS.gene053479:CDS 45.0%
TTTAAGTATTCGGGTCGGGA+AGG - chr4.3:26472255-26472274 MS.gene053479:CDS 45.0%
! GCTTCACATGTTGGTGGAAA+TGG - chr4.3:26472148-26472167 MS.gene053479:CDS 45.0%
! TTCATAGGAGGTGATAGTGC+TGG - chr4.3:26472214-26472233 MS.gene053479:CDS 45.0%
!! GTGGAAATGGCTCTGATGAA+TGG - chr4.3:26472161-26472180 MS.gene053479:CDS 45.0%
!!! AGAAGAGGGAGTTTTTGGGT+TGG + chr4.3:26471947-26471966 None:intergenic 45.0%
AACGGCTACTTCATCGTCGA+TGG + chr4.3:26471750-26471769 None:intergenic 50.0%
ACCGCAGCATTGTCACATGT+TGG + chr4.3:26472634-26472653 None:intergenic 50.0%
CCGGCTAATGATCCGGATTT+AGG - chr4.3:26472448-26472467 MS.gene053479:CDS 50.0%
CGGGTTAATCAACGGGTCAT+CGG + chr4.3:26472431-26472450 None:intergenic 50.0%
CTTGAGAAAAGTGGTTGGGG+TGG - chr4.3:26472553-26472572 MS.gene053479:CDS 50.0%
TCGGGTCGGGAAGGAAAATT+TGG - chr4.3:26472264-26472283 MS.gene053479:CDS 50.0%
TCTTCATGACCTGTGGGAAC+AGG + chr4.3:26472103-26472122 None:intergenic 50.0%
TGGGTTGCTTCACATGTTGG+TGG - chr4.3:26472142-26472161 MS.gene053479:CDS 50.0%
TTTGCATGTCCAACGACGAC+TGG - chr4.3:26472403-26472422 MS.gene053479:CDS 50.0%
! ATAGGAGGTGATAGTGCTGG+TGG - chr4.3:26472217-26472236 MS.gene053479:CDS 50.0%
! CGATGACCCGTTGATTAACC+CGG - chr4.3:26472429-26472448 MS.gene053479:CDS 50.0%
! TACTTCATCGTCGATGGTGG+AGG + chr4.3:26471744-26471763 None:intergenic 50.0%
!! CAATGCAGAAAGCACCACCA+TGG + chr4.3:26471979-26471998 None:intergenic 50.0%
!!! AGAGGGAGTTTTTGGGTTGG+TGG + chr4.3:26471944-26471963 None:intergenic 50.0%
!!! GAGGGAGTTTTTGGGTTGGT+GGG + chr4.3:26471943-26471962 None:intergenic 50.0%
CCAGAACATCCTGTTCCCAC+AGG - chr4.3:26472091-26472110 MS.gene053479:CDS 55.0%
CCTGTGGGAACAGGATGTTC+TGG + chr4.3:26472094-26472113 None:intergenic 55.0%
GGCTACTTCATCGTCGATGG+TGG + chr4.3:26471747-26471766 None:intergenic 55.0%
GGTCGTGTTCAGAGACTTGC+AGG - chr4.3:26471803-26471822 MS.gene053479:CDS 55.0%
TCATCGGATCCAGTCGTCGT+TGG + chr4.3:26472415-26472434 None:intergenic 55.0%
!! TTCATCGTCGATGGTGGAGG+AGG + chr4.3:26471741-26471760 None:intergenic 55.0%
! AAGTGGTTGGGGTGGTGCTG+TGG - chr4.3:26472561-26472580 MS.gene053479:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 26471728 26472693 26471728 ID=MS.gene053479
chr4.3 mRNA 26471728 26472693 26471728 ID=MS.gene053479.t1;Parent=MS.gene053479
chr4.3 exon 26471728 26472693 26471728 ID=MS.gene053479.t1.exon1;Parent=MS.gene053479.t1
chr4.3 CDS 26471728 26472693 26471728 ID=cds.MS.gene053479.t1;Parent=MS.gene053479.t1
Gene Sequence

>MS.gene053479

ATGGATTCAACCTCCTCCACCATCGACGATGAAGTAGCCGTTGATCTAACCCCAGTTCTTAAATTATACAAAAGTGGTCGTGTTCAGAGACTTGCAGGTACGGAAGTTCTTCCTCCATCTCTTGATCCTAAAACCAACGTTGAATCTAAAGATGTTATAATCTCCGAAGAACATAACATCTCAGCAAGACTTTTCATTCCAAAAACCAATTACCCACCAACCCAAAAACTCCCTCTTCTTGTTTACATCCATGGTGGTGCTTTCTGCATTGAAACACCTTTCTCACCAAACTACCATAACTACCTTAACTCTGTTACGTCACTTGCTAACGTTATTGGTGTGTCTGTTCATTACAGAAGAGCACCAGAACATCCTGTTCCCACAGGTCATGAAGATTCATGGCTTGCACTCAAATGGGTTGCTTCACATGTTGGTGGAAATGGCTCTGATGAATGGTTGAATCAATATGCAGATTTTGAGAAAGTTTTCATAGGAGGTGATAGTGCTGGTGGTAATATTGCACACCATTTAAGTATTCGGGTCGGGAAGGAAAATTTGGATGGTTTGAAACTTGAAGGGAGTTTTTATATTCATCCTTATTTTTGGGGTGTAGATCGAATTGGTTCAGAACTGAAACAAGCTGAATATATAGAAAAGATTCATAATTTATGGCGTTTTGCATGTCCAACGACGACTGGATCCGATGACCCGTTGATTAACCCGGCTAATGATCCGGATTTAGGGAAGTTGGGTTGTAAGAGATTGCTTATTTGTGTTGCTGGGCAAGATATTTTGAAGGATAGGGGTTGGTATTATAAGGAATTGCTTGAGAAAAGTGGTTGGGGTGGTGCTGTGGAAGTGATTGAAACGGAGGATGAGAATCATGTGTTTCATATGTTCAAACCAACATGTGACAATGCTGCGGTTTTGCTTAACCAAGTTGTTTCCTTCATCAAAGGTGCTTGA

Protein sequence

>MS.gene053479.t1

MDSTSSTIDDEVAVDLTPVLKLYKSGRVQRLAGTEVLPPSLDPKTNVESKDVIISEEHNISARLFIPKTNYPPTQKLPLLVYIHGGAFCIETPFSPNYHNYLNSVTSLANVIGVSVHYRRAPEHPVPTGHEDSWLALKWVASHVGGNGSDEWLNQYADFEKVFIGGDSAGGNIAHHLSIRVGKENLDGLKLEGSFYIHPYFWGVDRIGSELKQAEYIEKIHNLWRFACPTTTGSDDPLINPANDPDLGKLGCKRLLICVAGQDILKDRGWYYKELLEKSGWGGAVEVIETEDENHVFHMFKPTCDNAAVLLNQVVSFIKGA