Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25806.t1 | AES71647.2 | 98.4 | 189 | 3 | 0 | 1 | 189 | 300 | 488 | 6.90E-92 | 347.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25806.t1 | G7J787 | 98.4 | 189 | 3 | 0 | 1 | 189 | 300 | 488 | 5.0e-92 | 347.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059900 | MS.gene25806 | -0.82379 | 1.15E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25806.t1 | MTR_3g080260 | 98.413 | 189 | 3 | 0 | 1 | 189 | 206 | 394 | 2.45e-130 | 374 |
| MS.gene25806.t1 | MTR_3g080260 | 98.413 | 189 | 3 | 0 | 1 | 189 | 300 | 488 | 1.36e-128 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25806.t1 | AT2G05755 | 56.545 | 191 | 77 | 3 | 1 | 189 | 197 | 383 | 7.24e-64 | 204 |
Find 53 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCAGCACTAACCCAATTT+TGG | 0.199909 | 3.2:+70455115 | MS.gene25806:intron |
| TCAAAGTAAGGCTCCAAAAT+TGG | 0.200660 | 3.2:-70455128 | None:intergenic |
| AAATGGAAGCCGCTTCAATT+TGG | 0.287247 | 3.2:-70456453 | None:intergenic |
| AGTCGCTTGAATTTGTAAAA+TGG | 0.313903 | 3.2:-70456470 | None:intergenic |
| TAAGTACATATTCCCATTGC+AGG | 0.410105 | 3.2:-70453346 | None:intergenic |
| GGTCTTGCTTGTAGTTTCTT+CGG | 0.415583 | 3.2:+70452400 | MS.gene25806:intron |
| CTTGTGTAGCAAGCATTTCT+CGG | 0.416716 | 3.2:-70452438 | None:intergenic |
| CAAAGTAAGGCTCCAAAATT+GGG | 0.424977 | 3.2:-70455127 | None:intergenic |
| AATATGTACTTATGTCTTTG+AGG | 0.461326 | 3.2:+70453357 | MS.gene25806:CDS |
| CCAACGAGGTGATCGAAAGC+TGG | 0.480405 | 3.2:-70455162 | None:intergenic |
| CCGGTCTCCCTTGAAGTGCT+TGG | 0.482602 | 3.2:-70456513 | None:intergenic |
| AACTAGTTACTGTCTTATAA+AGG | 0.483748 | 3.2:+70452807 | MS.gene25806:CDS |
| AGTAAAATTGACTGAACTGT+TGG | 0.499024 | 3.2:-70454188 | None:intergenic |
| AAGATCGACCAAGCACTTCA+AGG | 0.505328 | 3.2:+70456505 | MS.gene25806:CDS |
| AGTTACTGTCTTATAAAGGC+TGG | 0.509263 | 3.2:+70452811 | MS.gene25806:CDS |
| ATGTCAACCTTCTCTAATTG+TGG | 0.509765 | 3.2:+70456555 | MS.gene25806:CDS |
| CTGTGTAATCTTACAGTGGC+TGG | 0.512651 | 3.2:-70452849 | None:intergenic |
| TCCAATCATGGCTTCAGTAA+TGG | 0.515462 | 3.2:+70451691 | None:intergenic |
| GAGTTGCACCTCAGCAAAGA+AGG | 0.516490 | 3.2:-70454234 | None:intergenic |
| CAACGAGGTGATCGAAAGCT+GGG | 0.523398 | 3.2:-70455161 | None:intergenic |
| TTCACTTTGCTGCATAACTC+CGG | 0.532275 | 3.2:-70456532 | None:intergenic |
| CATACTGGCTAGCCCTGCAA+TGG | 0.534353 | 3.2:+70453333 | MS.gene25806:CDS |
| CTCGATTGTCCAAATTGAAG+CGG | 0.534624 | 3.2:+70456444 | MS.gene25806:CDS |
| AGGACTACAACTTGAGAGGA+TGG | 0.537836 | 3.2:+70454397 | MS.gene25806:CDS |
| CCAGCTTTCGATCACCTCGT+TGG | 0.539340 | 3.2:+70455162 | MS.gene25806:CDS |
| CGCTTCAATTTGGACAATCG+AGG | 0.546149 | 3.2:-70456443 | None:intergenic |
| GGGACACTAATGTCAAAGTA+AGG | 0.548142 | 3.2:-70455140 | None:intergenic |
| AATTCAAGCGACTTCAAAAG+AGG | 0.550735 | 3.2:+70456480 | MS.gene25806:CDS |
| AGATCGACCAAGCACTTCAA+GGG | 0.554058 | 3.2:+70456506 | MS.gene25806:CDS |
| CCAAGCACTTCAAGGGAGAC+CGG | 0.555353 | 3.2:+70456513 | MS.gene25806:CDS |
| GTGATGATACCTCCATGTAC+TGG | 0.555513 | 3.2:-70454436 | None:intergenic |
| AGTTGCCAACATCCAGTACA+TGG | 0.560300 | 3.2:+70454424 | MS.gene25806:CDS |
| ATACTGGCTAGCCCTGCAAT+GGG | 0.567757 | 3.2:+70453334 | MS.gene25806:CDS |
| TATTCTAGCCTTCTTTGCTG+AGG | 0.573974 | 3.2:+70454226 | MS.gene25806:CDS |
| GAGGTTTCCACAATTAGAGA+AGG | 0.574305 | 3.2:-70456562 | None:intergenic |
| ATTGCAAATATATGATGACT+TGG | 0.575308 | 3.2:-70452751 | None:intergenic |
| GCGTGAGAAATTGAAAATTG+CGG | 0.576032 | 3.2:+70451727 | MS.gene25806:CDS |
| CATATATTTGCAATCCTAGT+GGG | 0.578076 | 3.2:+70452760 | MS.gene25806:CDS |
| CGAGAAATGCTTGCTACACA+AGG | 0.590900 | 3.2:+70452439 | MS.gene25806:CDS |
| TTGATGAAAATATGCCCACT+AGG | 0.596900 | 3.2:-70452774 | None:intergenic |
| CACGAGGACTACAACTTGAG+AGG | 0.609831 | 3.2:+70454393 | MS.gene25806:CDS |
| TACCTCCATGTACTGGATGT+TGG | 0.619830 | 3.2:-70454429 | None:intergenic |
| TCATATATTTGCAATCCTAG+TGG | 0.622275 | 3.2:+70452759 | MS.gene25806:CDS |
| AAGTACATATTCCCATTGCA+GGG | 0.628314 | 3.2:-70453345 | None:intergenic |
| GGACTACAACTTGAGAGGAT+GGG | 0.630136 | 3.2:+70454398 | MS.gene25806:CDS |
| ATTCAAGCGACTTCAAAAGA+GGG | 0.636785 | 3.2:+70456481 | MS.gene25806:CDS |
| TCATGGCTTCAGTAATGGCA+CGG | 0.644341 | 3.2:+70451696 | None:intergenic |
| GATTTAGTGAAGTCGCGAGG+AGG | 0.653220 | 3.2:-70456581 | None:intergenic |
| AACGATTTAGTGAAGTCGCG+AGG | 0.662641 | 3.2:-70456584 | None:intergenic |
| ATACAGGTCTTGTTAGCACG+AGG | 0.688361 | 3.2:+70454377 | MS.gene25806:intron |
| AACGAGGTGATCGAAAGCTG+GGG | 0.700038 | 3.2:-70455160 | None:intergenic |
| TGCCAACATCCAGTACATGG+AGG | 0.760914 | 3.2:+70454427 | MS.gene25806:CDS |
| CAATAAGTAAAATTCCAACG+AGG | 0.791330 | 3.2:-70455176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTTATACAAAACTAT+GGG | + | chr3.2:70453578-70453597 | MS.gene25806:intron | 10.0% |
| !! | TAAATATTTATACAAAACTA+TGG | + | chr3.2:70453577-70453596 | MS.gene25806:intron | 10.0% |
| !!! | TTTAAAGATTTTTTTGTTAA+AGG | - | chr3.2:70456026-70456045 | None:intergenic | 10.0% |
| !! | AAATCGAACTAATTAAAAAA+AGG | + | chr3.2:70455918-70455937 | MS.gene25806:intron | 15.0% |
| !! | TATAAATATTCAAGAATTGT+TGG | + | chr3.2:70454624-70454643 | MS.gene25806:intron | 15.0% |
| !!! | ATAAATTCTAAAACAAAAAG+AGG | - | chr3.2:70453024-70453043 | None:intergenic | 15.0% |
| !!! | ATATGCATGATATTTTTTTT+TGG | + | chr3.2:70454029-70454048 | MS.gene25806:intron | 15.0% |
| !!! | TAAATTCTAAAACAAAAAGA+GGG | - | chr3.2:70453023-70453042 | None:intergenic | 15.0% |
| !!! | TAATTTTTATAGATATGACA+TGG | - | chr3.2:70454120-70454139 | None:intergenic | 15.0% |
| !! | AAACACACTTTAATATATGA+TGG | + | chr3.2:70454331-70454350 | MS.gene25806:intron | 20.0% |
| !! | AAGAAATAATACACTAGAAA+AGG | - | chr3.2:70455029-70455048 | None:intergenic | 20.0% |
| !! | ATAATATGAATTGATCTGAT+CGG | + | chr3.2:70454930-70454949 | MS.gene25806:intron | 20.0% |
| !! | ATTATACATCAATCTTATAC+AGG | + | chr3.2:70454361-70454380 | MS.gene25806:intron | 20.0% |
| !! | CTAAAATGGAAAAAAATTTG+TGG | - | chr3.2:70453236-70453255 | None:intergenic | 20.0% |
| !! | GTAAAACAAAAGATCTTAAA+TGG | - | chr3.2:70451975-70451994 | None:intergenic | 20.0% |
| !! | TATATATCATCATCATAACA+AGG | + | chr3.2:70456186-70456205 | MS.gene25806:intron | 20.0% |
| !! | TCTTGAGATATTATAAATCA+AGG | - | chr3.2:70454763-70454782 | None:intergenic | 20.0% |
| !! | TTTACATCTCTAAACTAAAA+TGG | - | chr3.2:70453250-70453269 | None:intergenic | 20.0% |
| !!! | AACCATTCATAATATTTTTG+AGG | - | chr3.2:70452030-70452049 | None:intergenic | 20.0% |
| !!! | ATATTTTCATCAATAATTGG+TGG | + | chr3.2:70452784-70452803 | MS.gene25806:CDS | 20.0% |
| !!! | ATCTTTAAAACAAACATCAT+TGG | + | chr3.2:70456037-70456056 | MS.gene25806:intron | 20.0% |
| !!! | CAATGTTTTAATAAACTTGT+TGG | - | chr3.2:70453756-70453775 | None:intergenic | 20.0% |
| !!! | CTTCATTTTTATGTTTATAC+TGG | + | chr3.2:70451994-70452013 | MS.gene25806:intron | 20.0% |
| !!! | CTTTTTTATGAAGTTTCATT+CGG | + | chr3.2:70451890-70451909 | MS.gene25806:intron | 20.0% |
| !!! | GTAATTTTTGTTAGCATTTA+AGG | + | chr3.2:70454088-70454107 | MS.gene25806:intron | 20.0% |
| !!! | TATTCTGGTTATTTCTATTT+TGG | + | chr3.2:70452943-70452962 | MS.gene25806:intron | 20.0% |
| !!! | TGTTATGATGATGATATATA+GGG | - | chr3.2:70456186-70456205 | None:intergenic | 20.0% |
| !!! | TTGTTATGATGATGATATAT+AGG | - | chr3.2:70456187-70456206 | None:intergenic | 20.0% |
| ! | AAATGAACCCATGAAAATAT+TGG | - | chr3.2:70453910-70453929 | None:intergenic | 25.0% |
| ! | AAATTTGTGAAAACACTAAG+CGG | - | chr3.2:70453525-70453544 | None:intergenic | 25.0% |
| ! | AACTAGTTACTGTCTTATAA+AGG | + | chr3.2:70452807-70452826 | MS.gene25806:CDS | 25.0% |
| ! | AATATGTACTTATGTCTTTG+AGG | + | chr3.2:70453357-70453376 | MS.gene25806:CDS | 25.0% |
| ! | AATTTGCATTATCTAGGTTT+GGG | + | chr3.2:70452635-70452654 | MS.gene25806:intron | 25.0% |
| ! | ACTATGGTATCAAAGTAAAT+GGG | + | chr3.2:70453068-70453087 | MS.gene25806:intron | 25.0% |
| ! | AGAAAATTAAAACCTAACCA+AGG | - | chr3.2:70455722-70455741 | None:intergenic | 25.0% |
| ! | AGTCTATATACAAAAGCTTT+GGG | + | chr3.2:70453470-70453489 | MS.gene25806:intron | 25.0% |
| ! | ATATTGTAAGTCTGATGATA+GGG | - | chr3.2:70456418-70456437 | None:intergenic | 25.0% |
| ! | ATATTTGTGTGTTTGATCAA+TGG | - | chr3.2:70452894-70452913 | None:intergenic | 25.0% |
| ! | ATTGCAAATATATGATGACT+TGG | - | chr3.2:70452754-70452773 | None:intergenic | 25.0% |
| ! | CAACTAAAAGAAAATGAGTT+AGG | - | chr3.2:70452475-70452494 | None:intergenic | 25.0% |
| ! | CACCTCAAAAATATTATGAA+TGG | + | chr3.2:70452025-70452044 | MS.gene25806:intron | 25.0% |
| ! | CGAACTAATTAAAAAAAGGA+TGG | + | chr3.2:70455922-70455941 | MS.gene25806:intron | 25.0% |
| ! | GCAAAAAATGAATAACATGT+AGG | + | chr3.2:70454658-70454677 | MS.gene25806:intron | 25.0% |
| ! | GTAAGCTTACTATAAATCAA+CGG | - | chr3.2:70452533-70452552 | None:intergenic | 25.0% |
| ! | TAAGCTTACTATAAATCAAC+GGG | - | chr3.2:70452532-70452551 | None:intergenic | 25.0% |
| ! | TAATCTACCGTTGAAAAAAT+TGG | + | chr3.2:70453873-70453892 | MS.gene25806:intron | 25.0% |
| ! | TACTATGGTATCAAAGTAAA+TGG | + | chr3.2:70453067-70453086 | MS.gene25806:intron | 25.0% |
| ! | TACTTCTTGTACGTAAAATA+TGG | - | chr3.2:70452296-70452315 | None:intergenic | 25.0% |
| ! | TATATTGTAAGTCTGATGAT+AGG | - | chr3.2:70456419-70456438 | None:intergenic | 25.0% |
| ! | TATTTGTGTGTTTGATCAAT+GGG | - | chr3.2:70452893-70452912 | None:intergenic | 25.0% |
| ! | TCTAATACATAGAAACAAAG+TGG | - | chr3.2:70454513-70454532 | None:intergenic | 25.0% |
| ! | TTTAACTAAATTTCCGAATG+TGG | + | chr3.2:70452675-70452694 | MS.gene25806:intron | 25.0% |
| !! | AACAACATTTGAAATCTTAC+AGG | - | chr3.2:70454061-70454080 | None:intergenic | 25.0% |
| !! | ACTTTCTTTGCAAATTTTGT+CGG | - | chr3.2:70455628-70455647 | None:intergenic | 25.0% |
| !! | AGGTAATTTTGTACTTGTAA+TGG | + | chr3.2:70453377-70453396 | MS.gene25806:intron | 25.0% |
| !! | AGTTCAGTCAATTTTACTTA+TGG | + | chr3.2:70454193-70454212 | MS.gene25806:CDS | 25.0% |
| !! | ATCATGAACCAATATTTTCA+TGG | + | chr3.2:70453899-70453918 | MS.gene25806:intron | 25.0% |
| !! | ATTTAGATCGATTGATTTCA+AGG | - | chr3.2:70455428-70455447 | None:intergenic | 25.0% |
| !! | ATTTTACTTATGGTTGTACT+TGG | + | chr3.2:70454203-70454222 | MS.gene25806:CDS | 25.0% |
| !! | CAAATTTGAATACTAGTCTA+GGG | + | chr3.2:70455061-70455080 | MS.gene25806:intron | 25.0% |
| !! | GCATATAATTTGCATTATCT+AGG | + | chr3.2:70452629-70452648 | MS.gene25806:intron | 25.0% |
| !! | GGCATATTTTCATCAATAAT+TGG | + | chr3.2:70452781-70452800 | MS.gene25806:CDS | 25.0% |
| !! | TAATTTGCATTATCTAGGTT+TGG | + | chr3.2:70452634-70452653 | MS.gene25806:intron | 25.0% |
| !! | TCAAATTTGAATACTAGTCT+AGG | + | chr3.2:70455060-70455079 | MS.gene25806:intron | 25.0% |
| !! | TCATGAACCAATATTTTCAT+GGG | + | chr3.2:70453900-70453919 | MS.gene25806:intron | 25.0% |
| !!! | ACTTTTAAAATCCTAGTAAG+TGG | + | chr3.2:70453704-70453723 | MS.gene25806:intron | 25.0% |
| !!! | ATCTTATTCCTAGTTTGTTT+AGG | - | chr3.2:70452182-70452201 | None:intergenic | 25.0% |
| !!! | ATGAAAATATTGGTTCATGA+TGG | - | chr3.2:70453900-70453919 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGTTAAAGGCAA+CGG | - | chr3.2:70456020-70456039 | None:intergenic | 25.0% |
| !!! | GCTATATATTTCTGTTTTTC+AGG | + | chr3.2:70455095-70455114 | MS.gene25806:intron | 25.0% |
| !!! | GGTTATTTCTATTTTGGTTA+TGG | + | chr3.2:70452949-70452968 | MS.gene25806:intron | 25.0% |
| !!! | TCTCTTTTTCAATCATTTGT+TGG | + | chr3.2:70453405-70453424 | MS.gene25806:intron | 25.0% |
| !!! | TTATCTTCATTGTTTTTCTC+TGG | + | chr3.2:70454294-70454313 | MS.gene25806:intron | 25.0% |
| AAACATTGTTTGTCTAAGTG+AGG | + | chr3.2:70453768-70453787 | MS.gene25806:intron | 30.0% | |
| AAATCCTAGTAAGTGGTATT+AGG | + | chr3.2:70453711-70453730 | MS.gene25806:intron | 30.0% | |
| AACAAAACCAAAGCATAAAC+CGG | - | chr3.2:70452924-70452943 | None:intergenic | 30.0% | |
| AATCATCTCGTGATTTCATT+GGG | + | chr3.2:70455458-70455477 | MS.gene25806:intron | 30.0% | |
| ACATGTAGGAAAATGTTGTA+AGG | + | chr3.2:70454672-70454691 | MS.gene25806:intron | 30.0% | |
| ACTAGAATCCTAAACAAACT+AGG | + | chr3.2:70452171-70452190 | MS.gene25806:intron | 30.0% | |
| AGAAGATGAGTTAGATTTAG+TGG | + | chr3.2:70453817-70453836 | MS.gene25806:intron | 30.0% | |
| AGATTAGACAAAAAGACATG+TGG | - | chr3.2:70454966-70454985 | None:intergenic | 30.0% | |
| AGTAAAATTGACTGAACTGT+TGG | - | chr3.2:70454191-70454210 | None:intergenic | 30.0% | |
| AGTCGCTTGAATTTGTAAAA+TGG | - | chr3.2:70456473-70456492 | None:intergenic | 30.0% | |
| ATCTTCCACAAATGCTATTA+AGG | + | chr3.2:70453993-70454012 | MS.gene25806:intron | 30.0% | |
| ATGAATTTCTATTTCACTGC+AGG | + | chr3.2:70453290-70453309 | MS.gene25806:intron | 30.0% | |
| ATTACTAGAAGCTCAAGTTA+AGG | - | chr3.2:70454859-70454878 | None:intergenic | 30.0% | |
| ATTTGTGTGTTTGATCAATG+GGG | - | chr3.2:70452892-70452911 | None:intergenic | 30.0% | |
| CAATAAGTAAAATTCCAACG+AGG | - | chr3.2:70455179-70455198 | None:intergenic | 30.0% | |
| CAATCAGTTTATCTGTACTA+TGG | + | chr3.2:70453052-70453071 | MS.gene25806:intron | 30.0% | |
| CAATGATAACTACACTCTAA+TGG | + | chr3.2:70452051-70452070 | MS.gene25806:intron | 30.0% | |
| CAGTCTATATACAAAAGCTT+TGG | + | chr3.2:70453469-70453488 | MS.gene25806:intron | 30.0% | |
| CATAGTACAGATAAACTGAT+TGG | - | chr3.2:70453054-70453073 | None:intergenic | 30.0% | |
| CATATATTTGCAATCCTAGT+GGG | + | chr3.2:70452760-70452779 | MS.gene25806:CDS | 30.0% | |
| CTAATCCTTAATAGCATTTG+TGG | - | chr3.2:70454001-70454020 | None:intergenic | 30.0% | |
| GAATCCACTAAATCTTATCA+TGG | - | chr3.2:70453850-70453869 | None:intergenic | 30.0% | |
| GCTTATCATTGAAACTATGA+GGG | - | chr3.2:70455559-70455578 | None:intergenic | 30.0% | |
| TAGACATACATATTCTCTCT+TGG | - | chr3.2:70452989-70453008 | None:intergenic | 30.0% | |
| TAGACCATGATAAGATTTAG+TGG | + | chr3.2:70453843-70453862 | MS.gene25806:intron | 30.0% | |
| TCATATATTTGCAATCCTAG+TGG | + | chr3.2:70452759-70452778 | MS.gene25806:CDS | 30.0% | |
| TCCAATTCCAAAAATGCTAA+TGG | - | chr3.2:70454579-70454598 | None:intergenic | 30.0% | |
| TGAGTGATAGTTTGAAGAAA+AGG | - | chr3.2:70456248-70456267 | None:intergenic | 30.0% | |
| TGCTTATCATTGAAACTATG+AGG | - | chr3.2:70455560-70455579 | None:intergenic | 30.0% | |
| TTGTAGGTATCAAAATCACA+TGG | - | chr3.2:70455675-70455694 | None:intergenic | 30.0% | |
| ! | AAATGGCTTTTCGGTTAAAA+AGG | - | chr3.2:70455362-70455381 | None:intergenic | 30.0% |
| ! | ATATTTTGTCTTTTGAGCCT+TGG | + | chr3.2:70455702-70455721 | MS.gene25806:intron | 30.0% |
| ! | ATGATGATGATATATAGGGA+CGG | - | chr3.2:70456182-70456201 | None:intergenic | 30.0% |
| ! | CATTTTGCCATTAGCATTTT+TGG | + | chr3.2:70454569-70454588 | MS.gene25806:intron | 30.0% |
| ! | TGTAGTTTTTGTAGTCATGA+TGG | + | chr3.2:70454712-70454731 | MS.gene25806:intron | 30.0% |
| !! | AATGCTATTAAGGATTAGTC+TGG | + | chr3.2:70454003-70454022 | MS.gene25806:intron | 30.0% |
| !! | ACACTTTGTCTTATTTGTAC+AGG | + | chr3.2:70454154-70454173 | MS.gene25806:intron | 30.0% |
| !! | AGAACAGATTTGTTGTTTGT+AGG | + | chr3.2:70452567-70452586 | MS.gene25806:intron | 30.0% |
| !! | CTTTTCTTTTTAGTGCATAG+AGG | + | chr3.2:70453112-70453131 | MS.gene25806:intron | 30.0% |
| !!! | ATGCTTTGGTTTTGTTATTC+TGG | + | chr3.2:70452928-70452947 | MS.gene25806:intron | 30.0% |
| !!! | TGATGGACCAATTTTTTCAA+CGG | - | chr3.2:70453883-70453902 | None:intergenic | 30.0% |
| !!! | TGCATGATTGATTTTGATTG+TGG | - | chr3.2:70455881-70455900 | None:intergenic | 30.0% |
| AAGAAAAGCTCAGAATTGTG+TGG | - | chr3.2:70453100-70453119 | None:intergenic | 35.0% | |
| AAGCAATGCTGACATATGTT+AGG | + | chr3.2:70452147-70452166 | MS.gene25806:intron | 35.0% | |
| AAGTACATATTCCCATTGCA+GGG | - | chr3.2:70453348-70453367 | None:intergenic | 35.0% | |
| AATTCAAGCGACTTCAAAAG+AGG | + | chr3.2:70456480-70456499 | MS.gene25806:CDS | 35.0% | |
| ACAAAACCAAAGCATAAACC+GGG | - | chr3.2:70452923-70452942 | None:intergenic | 35.0% | |
| ACAACTGTGTAATCTTACAG+TGG | - | chr3.2:70452856-70452875 | None:intergenic | 35.0% | |
| ACACACAAATATTATGCTCC+CGG | + | chr3.2:70452902-70452921 | MS.gene25806:intron | 35.0% | |
| ACAGATAAACTGATTGGAAC+AGG | - | chr3.2:70453048-70453067 | None:intergenic | 35.0% | |
| AGCAACATCTGATATCTTAC+TGG | - | chr3.2:70453944-70453963 | None:intergenic | 35.0% | |
| AGCAAGACCTGAAAAATACA+CGG | - | chr3.2:70452389-70452408 | None:intergenic | 35.0% | |
| AGTTACTGTCTTATAAAGGC+TGG | + | chr3.2:70452811-70452830 | MS.gene25806:CDS | 35.0% | |
| ATGTCAACCTTCTCTAATTG+TGG | + | chr3.2:70456555-70456574 | MS.gene25806:CDS | 35.0% | |
| ATGTCAAGAGATTTAAGCAG+AGG | + | chr3.2:70456291-70456310 | MS.gene25806:intron | 35.0% | |
| ATTAGAGACCCTAACTAGTT+GGG | + | chr3.2:70454527-70454546 | MS.gene25806:intron | 35.0% | |
| ATTCAAGCGACTTCAAAAGA+GGG | + | chr3.2:70456481-70456500 | MS.gene25806:CDS | 35.0% | |
| CAAAGTAAGGCTCCAAAATT+GGG | - | chr3.2:70455130-70455149 | None:intergenic | 35.0% | |
| CAACATCTGATATCTTACTG+GGG | - | chr3.2:70453942-70453961 | None:intergenic | 35.0% | |
| CAATCATCTCGTGATTTCAT+TGG | + | chr3.2:70455457-70455476 | MS.gene25806:intron | 35.0% | |
| CAATCCTAATACCACTTACT+AGG | - | chr3.2:70453718-70453737 | None:intergenic | 35.0% | |
| CGAAGAAATCACACATAAAC+AGG | + | chr3.2:70455813-70455832 | MS.gene25806:intron | 35.0% | |
| CTAGTAGACTATGTGATCAA+GGG | - | chr3.2:70454884-70454903 | None:intergenic | 35.0% | |
| CTTAAATCTCTTGACATTCG+TGG | - | chr3.2:70456288-70456307 | None:intergenic | 35.0% | |
| GCAACATCTGATATCTTACT+GGG | - | chr3.2:70453943-70453962 | None:intergenic | 35.0% | |
| GCGTGAGAAATTGAAAATTG+CGG | + | chr3.2:70451727-70451746 | MS.gene25806:CDS | 35.0% | |
| GTATGTTGTACCATGTACAT+AGG | + | chr3.2:70455207-70455226 | MS.gene25806:intron | 35.0% | |
| TAAGTACATATTCCCATTGC+AGG | - | chr3.2:70453349-70453368 | None:intergenic | 35.0% | |
| TAGTTCCAACATGTTTAACC+AGG | - | chr3.2:70454835-70454854 | None:intergenic | 35.0% | |
| TATTAGAGACCCTAACTAGT+TGG | + | chr3.2:70454526-70454545 | MS.gene25806:intron | 35.0% | |
| TCAAAGTAAGGCTCCAAAAT+TGG | - | chr3.2:70455131-70455150 | None:intergenic | 35.0% | |
| TCAAGGTGAATCAATTCTGA+AGG | - | chr3.2:70455411-70455430 | None:intergenic | 35.0% | |
| TCATCATCATAACAAGGAAC+TGG | + | chr3.2:70456192-70456211 | MS.gene25806:intron | 35.0% | |
| TCTACGTAATACAAGAATCG+TGG | - | chr3.2:70452253-70452272 | None:intergenic | 35.0% | |
| TCTAGTAGACTATGTGATCA+AGG | - | chr3.2:70454885-70454904 | None:intergenic | 35.0% | |
| TGTCAAGAGATTTAAGCAGA+GGG | + | chr3.2:70456292-70456311 | MS.gene25806:intron | 35.0% | |
| TTAAGTTCCACTTTCTTGTC+CGG | - | chr3.2:70452121-70452140 | None:intergenic | 35.0% | |
| TTGAGTGATGTATCTGTGTT+GGG | + | chr3.2:70455265-70455284 | MS.gene25806:intron | 35.0% | |
| TTGATGAAAATATGCCCACT+AGG | - | chr3.2:70452777-70452796 | None:intergenic | 35.0% | |
| TTTGAGTGATGTATCTGTGT+TGG | + | chr3.2:70455264-70455283 | MS.gene25806:intron | 35.0% | |
| TTTGCGTTTGTATGATTTCG+AGG | + | chr3.2:70452607-70452626 | MS.gene25806:intron | 35.0% | |
| ! | AACCTAGTGAAATGGCTTTT+CGG | - | chr3.2:70455371-70455390 | None:intergenic | 35.0% |
| ! | AATTTTGTCGGATGCAAAAC+TGG | - | chr3.2:70455616-70455635 | None:intergenic | 35.0% |
| ! | AGGTTGACTGTCTTTTCATT+TGG | + | chr3.2:70453310-70453329 | MS.gene25806:intron | 35.0% |
| ! | ATGTCTGGTTTATGTCATCT+TGG | - | chr3.2:70456372-70456391 | None:intergenic | 35.0% |
| ! | GGATCTAAAACCTAGTGAAA+TGG | - | chr3.2:70455379-70455398 | None:intergenic | 35.0% |
| ! | GTTGATTTCCCAACTAGTTA+GGG | - | chr3.2:70454538-70454557 | None:intergenic | 35.0% |
| ! | TGTCTTTTCATTTGGCATAC+TGG | + | chr3.2:70453318-70453337 | MS.gene25806:CDS | 35.0% |
| ! | TTATGTCATCTTGGTTTGAG+TGG | - | chr3.2:70456363-70456382 | None:intergenic | 35.0% |
| ! | TTCAATGCCGTGTATTTTTC+AGG | + | chr3.2:70452379-70452398 | MS.gene25806:intron | 35.0% |
| ! | TTTGTAGTCATGATGGAAGT+AGG | + | chr3.2:70454719-70454738 | MS.gene25806:intron | 35.0% |
| ! | TTTTGCATTTAGTCTCTTCC+TGG | + | chr3.2:70454814-70454833 | MS.gene25806:intron | 35.0% |
| !! | ACAAAAGCTTTGGGTTTGTT+TGG | + | chr3.2:70453479-70453498 | MS.gene25806:intron | 35.0% |
| !! | ATATATAGGGACGGACTATA+GGG | - | chr3.2:70456173-70456192 | None:intergenic | 35.0% |
| !! | TGTTGATTTCCCAACTAGTT+AGG | - | chr3.2:70454539-70454558 | None:intergenic | 35.0% |
| !!! | GCCATTAGCATTTTTGGAAT+TGG | + | chr3.2:70454575-70454594 | MS.gene25806:intron | 35.0% |
| AAAAGGATGGAAACTACGCA+TGG | + | chr3.2:70455935-70455954 | MS.gene25806:intron | 40.0% | |
| AAAGGATGGAAACTACGCAT+GGG | + | chr3.2:70455936-70455955 | MS.gene25806:intron | 40.0% | |
| AAATGGAAGCCGCTTCAATT+TGG | - | chr3.2:70456456-70456475 | None:intergenic | 40.0% | |
| AACCGAAAAGCCATTTCACT+AGG | + | chr3.2:70455366-70455385 | MS.gene25806:intron | 40.0% | |
| AAGAGCCTAAGTTTCGTGTT+TGG | - | chr3.2:70452212-70452231 | None:intergenic | 40.0% | |
| AATCAACGGGAACAAACAAC+TGG | - | chr3.2:70452519-70452538 | None:intergenic | 40.0% | |
| ACAACCCAAACACGAAACTT+AGG | + | chr3.2:70452204-70452223 | MS.gene25806:intron | 40.0% | |
| ACTATGTTCCTTCTGAGTCA+TGG | - | chr3.2:70456146-70456165 | None:intergenic | 40.0% | |
| AGAGCCTAAGTTTCGTGTTT+GGG | - | chr3.2:70452211-70452230 | None:intergenic | 40.0% | |
| ATGTATCTGTGTTGGGTTTG+CGG | + | chr3.2:70455272-70455291 | MS.gene25806:intron | 40.0% | |
| ATGTTCGTAGAACTTAGAGC+TGG | + | chr3.2:70453183-70453202 | MS.gene25806:intron | 40.0% | |
| CAAACGTAAAGAGAACGTCT+AGG | - | chr3.2:70454475-70454494 | None:intergenic | 40.0% | |
| CAAGTAAACCTCATACTACC+CGG | + | chr3.2:70452099-70452118 | MS.gene25806:intron | 40.0% | |
| CTCGATTGTCCAAATTGAAG+CGG | + | chr3.2:70456444-70456463 | MS.gene25806:CDS | 40.0% | |
| CTCTTCCTGGTTAAACATGT+TGG | + | chr3.2:70454827-70454846 | MS.gene25806:intron | 40.0% | |
| CTTGTGTAGCAAGCATTTCT+CGG | - | chr3.2:70452441-70452460 | None:intergenic | 40.0% | |
| CTTTGATCCTCCTGATTCAT+CGG | - | chr3.2:70456121-70456140 | None:intergenic | 40.0% | |
| GAGGTTTCCACAATTAGAGA+AGG | - | chr3.2:70456565-70456584 | None:intergenic | 40.0% | |
| GGACATGAGTTCACTAATGT+TGG | - | chr3.2:70456342-70456361 | None:intergenic | 40.0% | |
| GGGACACTAATGTCAAAGTA+AGG | - | chr3.2:70455143-70455162 | None:intergenic | 40.0% | |
| GGGTAGTATGAGGTTTACTT+GGG | - | chr3.2:70452100-70452119 | None:intergenic | 40.0% | |
| GGTCTTGCTTGTAGTTTCTT+CGG | + | chr3.2:70452400-70452419 | MS.gene25806:intron | 40.0% | |
| TAAGTTCCACTTTCTTGTCC+GGG | - | chr3.2:70452120-70452139 | None:intergenic | 40.0% | |
| TATCATTCCATCTCCTTGTC+AGG | - | chr3.2:70455234-70455253 | None:intergenic | 40.0% | |
| TCAAAGATCCATGACTCAGA+AGG | + | chr3.2:70456135-70456154 | MS.gene25806:intron | 40.0% | |
| TCAACTTTGTCTAACTGTCC+TGG | - | chr3.2:70452706-70452725 | None:intergenic | 40.0% | |
| TCATTCGGTCTAGAAAGACA+AGG | + | chr3.2:70451905-70451924 | MS.gene25806:intron | 40.0% | |
| TGGCATACTAAACCTTGTGT+AGG | + | chr3.2:70452071-70452090 | MS.gene25806:intron | 40.0% | |
| TGTCCTGGAAAATCCACATT+CGG | - | chr3.2:70452691-70452710 | None:intergenic | 40.0% | |
| TTACTTGGGTTACCTACACA+AGG | - | chr3.2:70452086-70452105 | None:intergenic | 40.0% | |
| TTCACTTTGCTGCATAACTC+CGG | - | chr3.2:70456535-70456554 | None:intergenic | 40.0% | |
| TTGGCATCTGAGTATCATCA+AGG | + | chr3.2:70456056-70456075 | MS.gene25806:intron | 40.0% | |
| TTGTAAGTCTGATGATAGGG+TGG | - | chr3.2:70456415-70456434 | None:intergenic | 40.0% | |
| TTTGTCTAAGTGAGGAAGTC+TGG | + | chr3.2:70453776-70453795 | MS.gene25806:intron | 40.0% | |
| ! | CAATTCTGAAGGAGCTAACT+TGG | - | chr3.2:70455400-70455419 | None:intergenic | 40.0% |
| ! | TAGGGGAATTTAAAGTGCAC+TGG | + | chr3.2:70455969-70455988 | MS.gene25806:intron | 40.0% |
| ! | TATTCTAGCCTTCTTTGCTG+AGG | + | chr3.2:70454226-70454245 | MS.gene25806:CDS | 40.0% |
| ! | TTGTCTTTTGAGCCTTGGTT+AGG | + | chr3.2:70455707-70455726 | MS.gene25806:intron | 40.0% |
| ! | TTTCCGAATGTGGATTTTCC+AGG | + | chr3.2:70452685-70452704 | MS.gene25806:intron | 40.0% |
| !! | CAGAGGGCATTTATCAAGAA+TGG | + | chr3.2:70456308-70456327 | MS.gene25806:intron | 40.0% |
| !! | GATATATAGGGACGGACTAT+AGG | - | chr3.2:70456174-70456193 | None:intergenic | 40.0% |
| AAGATCGACCAAGCACTTCA+AGG | + | chr3.2:70456505-70456524 | MS.gene25806:CDS | 45.0% | |
| ACGCATGGGTAAAAGGTTCT+AGG | + | chr3.2:70455950-70455969 | MS.gene25806:intron | 45.0% | |
| AGATCGACCAAGCACTTCAA+GGG | + | chr3.2:70456506-70456525 | MS.gene25806:CDS | 45.0% | |
| AGGACTACAACTTGAGAGGA+TGG | + | chr3.2:70454397-70454416 | MS.gene25806:CDS | 45.0% | |
| AGTTGCCAACATCCAGTACA+TGG | + | chr3.2:70454424-70454443 | MS.gene25806:CDS | 45.0% | |
| ATACTACCCGGACAAGAAAG+TGG | + | chr3.2:70452111-70452130 | MS.gene25806:intron | 45.0% | |
| ATCAAGGATCACACTGAACC+AGG | + | chr3.2:70456072-70456091 | MS.gene25806:intron | 45.0% | |
| CATGTACATAGGACCTGACA+AGG | + | chr3.2:70455218-70455237 | MS.gene25806:intron | 45.0% | |
| CGCATGGGTAAAAGGTTCTA+GGG | + | chr3.2:70455951-70455970 | MS.gene25806:intron | 45.0% | |
| CGCTTCAATTTGGACAATCG+AGG | - | chr3.2:70456446-70456465 | None:intergenic | 45.0% | |
| CGGGTAGTATGAGGTTTACT+TGG | - | chr3.2:70452101-70452120 | None:intergenic | 45.0% | |
| CTGTGTAATCTTACAGTGGC+TGG | - | chr3.2:70452852-70452871 | None:intergenic | 45.0% | |
| CTTGTCAGGTCCTATGTACA+TGG | - | chr3.2:70455220-70455239 | None:intergenic | 45.0% | |
| GGAAACTACGCATGGGTAAA+AGG | + | chr3.2:70455943-70455962 | MS.gene25806:intron | 45.0% | |
| GGACTACAACTTGAGAGGAT+GGG | + | chr3.2:70454398-70454417 | MS.gene25806:CDS | 45.0% | |
| GTCATTGCGGAAACAATGTC+TGG | - | chr3.2:70456387-70456406 | None:intergenic | 45.0% | |
| GTGATGATACCTCCATGTAC+TGG | - | chr3.2:70454439-70454458 | None:intergenic | 45.0% | |
| TACCTCCATGTACTGGATGT+TGG | - | chr3.2:70454432-70454451 | None:intergenic | 45.0% | |
| TAGGGTGGCATTAGTCATTG+CGG | - | chr3.2:70456400-70456419 | None:intergenic | 45.0% | |
| TATGCTCCCGGTTTATGCTT+TGG | + | chr3.2:70452914-70452933 | MS.gene25806:intron | 45.0% | |
| TGTTAAAGGCAACGGAATGC+AGG | - | chr3.2:70456012-70456031 | None:intergenic | 45.0% | |
| TTTCTTGTCCGGGTAGTATG+AGG | - | chr3.2:70452110-70452129 | None:intergenic | 45.0% | |
| TTTGTCGGATGCAAAACTGG+TGG | - | chr3.2:70455613-70455632 | None:intergenic | 45.0% | |
| ! | AGGCAGCACTAACCCAATTT+TGG | + | chr3.2:70455115-70455134 | MS.gene25806:intron | 45.0% |
| ! | AGTCATGATGGAAGTAGGTC+AGG | + | chr3.2:70454724-70454743 | MS.gene25806:intron | 45.0% |
| ! | CGAGAAATGCTTGCTACACA+AGG | + | chr3.2:70452439-70452458 | MS.gene25806:CDS | 45.0% |
| ! | GCATGGGTAAAAGGTTCTAG+GGG | + | chr3.2:70455952-70455971 | MS.gene25806:intron | 45.0% |
| ! | GTCATGATGGAAGTAGGTCA+GGG | + | chr3.2:70454725-70454744 | MS.gene25806:intron | 45.0% |
| !! | ATACAGGTCTTGTTAGCACG+AGG | + | chr3.2:70454377-70454396 | MS.gene25806:intron | 45.0% |
| AACGAGGTGATCGAAAGCTG+GGG | - | chr3.2:70455163-70455182 | None:intergenic | 50.0% | |
| AAGGATCACACTGAACCAGG+AGG | + | chr3.2:70456075-70456094 | MS.gene25806:intron | 50.0% | |
| CAACGAGGTGATCGAAAGCT+GGG | - | chr3.2:70455164-70455183 | None:intergenic | 50.0% | |
| CACGAGGACTACAACTTGAG+AGG | + | chr3.2:70454393-70454412 | MS.gene25806:CDS | 50.0% | |
| CACTCATCGTCCGATGAATC+AGG | + | chr3.2:70456108-70456127 | MS.gene25806:intron | 50.0% | |
| CATAGGACCTGACAAGGAGA+TGG | + | chr3.2:70455224-70455243 | MS.gene25806:intron | 50.0% | |
| CTGATTCATCGGACGATGAG+TGG | - | chr3.2:70456110-70456129 | None:intergenic | 50.0% | |
| GAGTGGTTCTTTGATCCTCC+TGG | - | chr3.2:70456093-70456112 | None:intergenic | 50.0% | |
| GAGTTGCACCTCAGCAAAGA+AGG | - | chr3.2:70454237-70454256 | None:intergenic | 50.0% | |
| TCATCGTCCGATGAATCAGG+AGG | + | chr3.2:70456111-70456130 | MS.gene25806:intron | 50.0% | |
| TGCCAACATCCAGTACATGG+AGG | + | chr3.2:70454427-70454446 | MS.gene25806:CDS | 50.0% | |
| TGGAAGTAGGTCAGGGATGA+TGG | + | chr3.2:70454732-70454751 | MS.gene25806:intron | 50.0% | |
| ! | ATACTGGCTAGCCCTGCAAT+GGG | + | chr3.2:70453334-70453353 | MS.gene25806:CDS | 50.0% |
| !! | ATAGGGACGGACTATAGGGA+CGG | - | chr3.2:70456169-70456188 | None:intergenic | 50.0% |
| CCAACGAGGTGATCGAAAGC+TGG | - | chr3.2:70455165-70455184 | None:intergenic | 55.0% | |
| CCAAGCACTTCAAGGGAGAC+CGG | + | chr3.2:70456513-70456532 | MS.gene25806:CDS | 55.0% | |
| CCAGCTTTCGATCACCTCGT+TGG | + | chr3.2:70455162-70455181 | MS.gene25806:CDS | 55.0% | |
| ! | CATACTGGCTAGCCCTGCAA+TGG | + | chr3.2:70453333-70453352 | MS.gene25806:CDS | 55.0% |
| ! | CCGGTCTCCCTTGAAGTGCT+TGG | - | chr3.2:70456516-70456535 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 70451698 | 70456600 | 70451698 | ID=MS.gene25806 |
| chr3.2 | mRNA | 70451698 | 70456600 | 70451698 | ID=MS.gene25806.t1;Parent=MS.gene25806 |
| chr3.2 | exon | 70451698 | 70451758 | 70451698 | ID=MS.gene25806.t1.exon1;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70451698 | 70451758 | 70451698 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| chr3.2 | exon | 70452401 | 70452460 | 70452401 | ID=MS.gene25806.t1.exon2;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70452401 | 70452460 | 70452401 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| chr3.2 | exon | 70452707 | 70452857 | 70452707 | ID=MS.gene25806.t1.exon3;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70452707 | 70452857 | 70452707 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| chr3.2 | exon | 70453312 | 70453378 | 70453312 | ID=MS.gene25806.t1.exon4;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70453312 | 70453378 | 70453312 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| chr3.2 | exon | 70454176 | 70454247 | 70454176 | ID=MS.gene25806.t1.exon5;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70454176 | 70454247 | 70454176 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| chr3.2 | exon | 70454383 | 70454448 | 70454383 | ID=MS.gene25806.t1.exon6;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70454383 | 70454448 | 70454383 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| chr3.2 | exon | 70455117 | 70455206 | 70455117 | ID=MS.gene25806.t1.exon7;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70455117 | 70455206 | 70455117 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| chr3.2 | exon | 70456427 | 70456600 | 70456427 | ID=MS.gene25806.t1.exon8;Parent=MS.gene25806.t1 |
| chr3.2 | CDS | 70456427 | 70456600 | 70456427 | ID=cds.MS.gene25806.t1;Parent=MS.gene25806.t1 |
| Gene Sequence |
| Protein sequence |
