Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25815.t1 | XP_003601383.2 | 98.6 | 1004 | 13 | 1 | 1 | 1003 | 1 | 1004 | 0.00E+00 | 1946.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25815.t1 | Q6TEP1 | 29.9 | 884 | 449 | 18 | 17 | 851 | 9 | 770 | 3.1e-94 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25815.t1 | G7J6Q2 | 98.6 | 1004 | 13 | 1 | 1 | 1003 | 1 | 1004 | 0.0e+00 | 1946.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056700 | MS.gene25815 | 0.820265 | 7.51E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25815.t1 | MTR_3g080120 | 98.606 | 1004 | 13 | 1 | 1 | 1003 | 1 | 1004 | 0.0 | 2030 |
| MS.gene25815.t1 | MTR_3g080120 | 98.498 | 932 | 13 | 1 | 73 | 1003 | 1 | 932 | 0.0 | 1878 |
| MS.gene25815.t1 | MTR_3g080120 | 98.374 | 861 | 13 | 1 | 144 | 1003 | 1 | 861 | 0.0 | 1723 |
| MS.gene25815.t1 | MTR_5g085880 | 75.617 | 1013 | 237 | 6 | 1 | 1003 | 1 | 1013 | 0.0 | 1553 |
| MS.gene25815.t1 | MTR_3g080120 | 98.397 | 624 | 9 | 1 | 381 | 1003 | 1 | 624 | 0.0 | 1243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25815.t1 | AT1G35220 | 71.813 | 1004 | 251 | 13 | 1 | 987 | 1 | 989 | 0.0 | 1451 |
| MS.gene25815.t1 | AT1G35220 | 71.813 | 1004 | 251 | 13 | 1 | 987 | 1 | 989 | 0.0 | 1451 |
| MS.gene25815.t1 | AT1G35220 | 71.813 | 1004 | 251 | 13 | 1 | 987 | 1 | 989 | 0.0 | 1451 |
| MS.gene25815.t1 | AT1G35220 | 71.933 | 962 | 238 | 13 | 43 | 987 | 27 | 973 | 0.0 | 1381 |
| MS.gene25815.t1 | AT1G35220 | 72.103 | 932 | 228 | 13 | 73 | 987 | 1 | 917 | 0.0 | 1336 |
| MS.gene25815.t1 | AT1G35220 | 71.397 | 909 | 228 | 13 | 96 | 987 | 1 | 894 | 0.0 | 1285 |
| MS.gene25815.t1 | AT1G35220 | 71.397 | 909 | 228 | 13 | 96 | 987 | 1 | 894 | 0.0 | 1285 |
Find 235 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCCTTCCTCTCCCATTTC+AGG | 0.115205 | 3.2:+70321634 | MS.gene25815:CDS |
| CTTTACTTTGGAAGAATTTA+AGG | 0.115236 | 3.2:+70315044 | MS.gene25815:CDS |
| CAAGGGGATGCTTCAGTTTC+AGG | 0.142472 | 3.2:+70318140 | MS.gene25815:CDS |
| GCATCTGCTGCACTAAAATT+TGG | 0.150563 | 3.2:-70313961 | None:intergenic |
| GCTCTACGAAGCGGGTAAAT+TGG | 0.158276 | 3.2:+70320163 | MS.gene25815:CDS |
| CGATTTATTGAGTTTAAATT+TGG | 0.161092 | 3.2:+70320469 | MS.gene25815:CDS |
| CCCTCAGGTCCAGTTCATTT+TGG | 0.180731 | 3.2:+70320806 | MS.gene25815:CDS |
| GTTCCTGTTGGAAAAGAATT+AGG | 0.192424 | 3.2:+70321187 | MS.gene25815:CDS |
| TATGACTCCTTGGATGAAAT+TGG | 0.237238 | 3.2:+70320847 | MS.gene25815:CDS |
| TTGGAGATTGTCGTCTTTAC+TGG | 0.240753 | 3.2:-70320588 | None:intergenic |
| CTATTAATTTCTCGTCGTTT+TGG | 0.240907 | 3.2:-70320607 | None:intergenic |
| TCATCGCTGATTGCACTTCT+TGG | 0.253652 | 3.2:-70318062 | None:intergenic |
| GCTTTGATGGCAGTATTCTT+AGG | 0.281673 | 3.2:+70321722 | MS.gene25815:CDS |
| TGCTTGTGTGCCTTCTTCAA+TGG | 0.297418 | 3.2:-70322808 | None:intergenic |
| CACAACTTTGGACTAAATAA+TGG | 0.305481 | 3.2:-70321388 | None:intergenic |
| ATTCTTTAACTTGCTCCTTC+TGG | 0.310433 | 3.2:-70321561 | None:intergenic |
| TGAGCCATCAGCGTTCATTA+AGG | 0.311506 | 3.2:-70321161 | None:intergenic |
| AGCTGCTGCTTCCGCTATTA+AGG | 0.312642 | 3.2:-70322964 | None:intergenic |
| AAGTTTGATCTTAATGAATC+TGG | 0.318033 | 3.2:+70321109 | MS.gene25815:CDS |
| CCTCAATCATCAGTTCTTCC+TGG | 0.318373 | 3.2:+70320782 | MS.gene25815:CDS |
| AGAGTAGATTGAATTCTCTT+AGG | 0.321185 | 3.2:-70310501 | None:intergenic |
| GCTTCCGCTATTAAGGAAAT+AGG | 0.321251 | 3.2:-70322957 | None:intergenic |
| GAATTCTCTATTGACTGATT+TGG | 0.324204 | 3.2:+70321237 | MS.gene25815:CDS |
| TGGAACCAGTTCTATTATAT+TGG | 0.324739 | 3.2:+70320538 | MS.gene25815:CDS |
| TCTTAAACATTCAGCCGTTC+TGG | 0.328176 | 3.2:+70321072 | MS.gene25815:CDS |
| TCATCTGAATTGCTTCAATC+TGG | 0.328676 | 3.2:+70321436 | MS.gene25815:CDS |
| GCTTCAGTTTCAGGCAATAA+TGG | 0.331916 | 3.2:+70318149 | MS.gene25815:CDS |
| CTCTACGAAGCGGGTAAATT+GGG | 0.337871 | 3.2:+70320164 | MS.gene25815:CDS |
| TTGCTTCCTGCTCCATTGGC+TGG | 0.339146 | 3.2:+70320935 | MS.gene25815:CDS |
| GATGAAGATGTTTCTCTTGC+TGG | 0.339376 | 3.2:+70318080 | MS.gene25815:CDS |
| ATCTGGAAAGTTGGTTACTA+TGG | 0.341342 | 3.2:+70321126 | MS.gene25815:CDS |
| AATTGTTCCTCAACTGTAAC+TGG | 0.347618 | 3.2:-70310435 | None:intergenic |
| AAATGCATCTGTTGCTGAAT+TGG | 0.349733 | 3.2:+70317914 | MS.gene25815:CDS |
| CTTGTGGCGGCTTCGTAAAC+AGG | 0.353887 | 3.2:-70322783 | None:intergenic |
| GCTTGTGTGCCTTCTTCAAT+GGG | 0.356749 | 3.2:-70322807 | None:intergenic |
| GCAGATGCGTTAAGACTTAC+AGG | 0.359535 | 3.2:+70313976 | MS.gene25815:CDS |
| GCAGCTGTTTCCTTATCATT+TGG | 0.361143 | 3.2:+70312308 | MS.gene25815:intron |
| CTCACTTGATGTCCCTGAAA+TGG | 0.362696 | 3.2:-70321647 | None:intergenic |
| GGCTGACTTGTCACAATTGC+AGG | 0.367178 | 3.2:+70317950 | MS.gene25815:CDS |
| CATATATTATTACACAACTT+TGG | 0.369873 | 3.2:-70321400 | None:intergenic |
| TTCCGTTGAGTGTTGAGTTT+GGG | 0.379273 | 3.2:+70321362 | MS.gene25815:CDS |
| ACTTCTCTTTAGATGAAAAC+TGG | 0.381109 | 3.2:-70321330 | None:intergenic |
| CATATTCCTTTATGACTCCT+TGG | 0.383998 | 3.2:+70320837 | MS.gene25815:CDS |
| GCGCTTGCTTCCTGCTCCAT+TGG | 0.384062 | 3.2:+70320931 | MS.gene25815:CDS |
| AATGAACAAGTGCAGATCTA+AGG | 0.384941 | 3.2:+70314026 | MS.gene25815:CDS |
| CATAAGATAGGATGTTATAT+TGG | 0.395029 | 3.2:-70318213 | None:intergenic |
| TCTAACGACTGAAATATCTT+TGG | 0.401745 | 3.2:+70320397 | MS.gene25815:CDS |
| CATCTAAAGAGAAGTATGAT+TGG | 0.402115 | 3.2:+70321338 | MS.gene25815:CDS |
| ATCTTGGTGGGGAGTTTGTC+TGG | 0.404237 | 3.2:+70315017 | MS.gene25815:CDS |
| AGGAAATAGGTTGACGTGCC+TGG | 0.405232 | 3.2:-70322944 | None:intergenic |
| ATCCCCTTGAATATCATTAT+CGG | 0.406199 | 3.2:-70318126 | None:intergenic |
| GGGTTAGGAGGGAAGCTTGA+AGG | 0.406532 | 3.2:+70321004 | MS.gene25815:CDS |
| GAGCCATCAGCGTTCATTAA+GGG | 0.406751 | 3.2:-70321160 | None:intergenic |
| AGAAAGCTCTCATATGGTCT+TGG | 0.407522 | 3.2:+70320963 | MS.gene25815:CDS |
| CATCTGCTGCACTAAAATTT+GGG | 0.408723 | 3.2:-70313960 | None:intergenic |
| GCGTTAAGACTTACAGGAAT+CGG | 0.410732 | 3.2:+70313982 | MS.gene25815:CDS |
| GATGTTTCTCTTGCTGGTCA+TGG | 0.416796 | 3.2:+70318086 | MS.gene25815:CDS |
| GTTCCGTTGAGTGTTGAGTT+TGG | 0.417516 | 3.2:+70321361 | MS.gene25815:CDS |
| TCTTAATGAATCTGGAAAGT+TGG | 0.422748 | 3.2:+70321117 | MS.gene25815:CDS |
| TATGAAGGCAACGCGAGTAT+AGG | 0.430218 | 3.2:-70318183 | None:intergenic |
| GGTTCTACAGTAGGAGGGTT+AGG | 0.430479 | 3.2:+70320989 | MS.gene25815:CDS |
| AATAGAACTGGTTCCATCAC+TGG | 0.430841 | 3.2:-70320531 | None:intergenic |
| GAAACTCTCCGAAGAGGAAA+TGG | 0.431108 | 3.2:+70315212 | MS.gene25815:intron |
| ACCCTTCCTCTCCCATTTCA+GGG | 0.431689 | 3.2:+70321635 | MS.gene25815:CDS |
| TTTGATCCTGATGTTGTAAA+GGG | 0.439875 | 3.2:+70315282 | MS.gene25815:CDS |
| ATCTAAAGAGAAGTATGATT+GGG | 0.440040 | 3.2:+70321339 | MS.gene25815:CDS |
| TCAGTTCTTCCTGGACCCTC+AGG | 0.441566 | 3.2:+70320791 | MS.gene25815:CDS |
| ATCACTGGGAACAGCTTCAT+AGG | 0.441869 | 3.2:-70320516 | None:intergenic |
| GCCTTCCAATATAATAGAAC+TGG | 0.443305 | 3.2:-70320543 | None:intergenic |
| AGCGGAAGCAGCAGCTGCCT+CGG | 0.444517 | 3.2:+70322971 | MS.gene25815:CDS |
| TTTCATCCAAGGAGTCATAA+AGG | 0.445392 | 3.2:-70320843 | None:intergenic |
| ATTTCAGTCGTTAGAGAGCT+TGG | 0.446253 | 3.2:-70320389 | None:intergenic |
| AGGCAATAATGGTCCTCGTT+CGG | 0.447835 | 3.2:+70318160 | MS.gene25815:CDS |
| AATAGTGGCCATTTCCTCTT+CGG | 0.448469 | 3.2:-70315220 | None:intergenic |
| TATAACATCCTATCTTATGA+TGG | 0.449505 | 3.2:+70318217 | MS.gene25815:CDS |
| ACTCCCCACCAAGATTCAAT+AGG | 0.452869 | 3.2:-70315009 | None:intergenic |
| GACGAGAAATTAATAGTTGA+AGG | 0.452937 | 3.2:+70320614 | MS.gene25815:CDS |
| CTTCAAGATACAAGTATACC+TGG | 0.457851 | 3.2:+70318035 | MS.gene25815:CDS |
| TTTCATTAAACAGTCTAAGA+AGG | 0.458992 | 3.2:-70321297 | None:intergenic |
| AACAAACGATCAAGGGTTGC+TGG | 0.465300 | 3.2:-70320719 | None:intergenic |
| GACTGATTTGGCAAACAAGA+TGG | 0.465659 | 3.2:+70321249 | MS.gene25815:CDS |
| TCATTAACACACCTTTGAAC+CGG | 0.467479 | 3.2:-70315356 | None:intergenic |
| ACATACTCCGCCAAATGATA+AGG | 0.468458 | 3.2:-70312318 | None:intergenic |
| TGATTGAGGAAGAGGCACTA+TGG | 0.468883 | 3.2:-70320768 | None:intergenic |
| TAGAGACCCTTTACAACATC+AGG | 0.468972 | 3.2:-70315288 | None:intergenic |
| ACGCAGGCTAAATGCATGAT+TGG | 0.469610 | 3.2:-70320267 | None:intergenic |
| TGTGTAATAATATATGTAGA+AGG | 0.471934 | 3.2:+70321407 | MS.gene25815:CDS |
| GTCTCAGCTTCTGTAATACC+CGG | 0.474448 | 3.2:-70320437 | None:intergenic |
| CTTGAATATCATTATCGGTA+TGG | 0.475986 | 3.2:-70318121 | None:intergenic |
| TCTGGAAGGTGCAAAATTTG+AGG | 0.476634 | 3.2:+70320226 | MS.gene25815:CDS |
| CTGGAAGGTGCAAAATTTGA+GGG | 0.480544 | 3.2:+70320227 | MS.gene25815:CDS |
| TGGGATGGTTCTACAGTAGG+AGG | 0.482221 | 3.2:+70320983 | MS.gene25815:CDS |
| TGAGGAAGGATTTGATAAGA+TGG | 0.482332 | 3.2:+70320340 | MS.gene25815:CDS |
| TCACTTGATGTCCCTGAAAT+GGG | 0.482924 | 3.2:-70321646 | None:intergenic |
| GCATCATTTGTATGTCGATT+GGG | 0.484482 | 3.2:+70317978 | MS.gene25815:CDS |
| AGAACTGATGATTGAGGAAG+AGG | 0.484864 | 3.2:-70320776 | None:intergenic |
| GAGCTTGGTTCATCATTGCT+TGG | 0.485678 | 3.2:-70320374 | None:intergenic |
| CACTATTGACAAAATATGTA+AGG | 0.486762 | 3.2:+70315236 | MS.gene25815:CDS |
| TGCATCATTTGTATGTCGAT+TGG | 0.487799 | 3.2:+70317977 | MS.gene25815:CDS |
| CATACCGATAATGATATTCA+AGG | 0.488869 | 3.2:+70318122 | MS.gene25815:CDS |
| TATGCAGAGTACCAAGCAAC+AGG | 0.491319 | 3.2:+70321517 | MS.gene25815:CDS |
| TTGTCTGGTGAACTTTACTT+TGG | 0.491496 | 3.2:+70315032 | MS.gene25815:CDS |
| TTCATAAGACTGCTCCCTGT+TGG | 0.493897 | 3.2:-70317732 | None:intergenic |
| GGCAGGCACCTATGTCAAAC+GGG | 0.494141 | 3.2:-70322920 | None:intergenic |
| GAAAGCTCTCATATGGTCTT+GGG | 0.494499 | 3.2:+70320964 | MS.gene25815:CDS |
| GCTGTTTCCTTATCATTTGG+CGG | 0.495881 | 3.2:+70312311 | MS.gene25815:intron |
| AAGATGGAGCTGTGCACAGT+TGG | 0.496366 | 3.2:+70321265 | MS.gene25815:CDS |
| AAAATGCATTACTCTTCAAT+CGG | 0.498683 | 3.2:-70317758 | None:intergenic |
| GTTTGATCCTGATGTTGTAA+AGG | 0.499124 | 3.2:+70315281 | MS.gene25815:CDS |
| TATGAAGCTGTTCCCAGTGA+TGG | 0.499556 | 3.2:+70320518 | MS.gene25815:CDS |
| TTCATCAGAACAACTGATAG+AGG | 0.501788 | 3.2:-70320896 | None:intergenic |
| CACGAAGAAACAAACGATCA+AGG | 0.502012 | 3.2:-70320727 | None:intergenic |
| GCTGTTACGCTCTACGAAGC+GGG | 0.502852 | 3.2:+70320155 | MS.gene25815:CDS |
| ATGATGGGTTCTGTTTCACC+AGG | 0.502896 | 3.2:+70318233 | MS.gene25815:CDS |
| TATTCTCCGCTGTGAAAGCT+TGG | 0.503007 | 3.2:+70320685 | MS.gene25815:CDS |
| AGCAACAGGTCCTGCTGCTA+AGG | 0.504572 | 3.2:+70321531 | MS.gene25815:CDS |
| CGTTAAGACTTACAGGAATC+GGG | 0.505217 | 3.2:+70313983 | MS.gene25815:CDS |
| TGAACTATGCTAGTGGAAGA+TGG | 0.505670 | 3.2:+70321599 | MS.gene25815:CDS |
| GTCCCTGAAATGGGAGAGGA+AGG | 0.507213 | 3.2:-70321637 | None:intergenic |
| TGACATAGGTGCCTGCCTCC+AGG | 0.508144 | 3.2:+70322926 | MS.gene25815:CDS |
| AGGTTGACGTGCCTGGAGGC+AGG | 0.508829 | 3.2:-70322937 | None:intergenic |
| CTATCAGTTGTTCTGATGAA+AGG | 0.509421 | 3.2:+70320899 | MS.gene25815:CDS |
| GTATCTTGAAGTATAGATGA+TGG | 0.509630 | 3.2:-70318023 | None:intergenic |
| TATCAGTTGTTCTGATGAAA+GGG | 0.510801 | 3.2:+70320900 | MS.gene25815:CDS |
| ATTTGTATGTCGATTGGGAT+GGG | 0.512893 | 3.2:+70317983 | MS.gene25815:CDS |
| ACCAGTTCTATTATATTGGA+AGG | 0.512944 | 3.2:+70320542 | MS.gene25815:CDS |
| TAGCAGCAGGACCTGTTGCT+TGG | 0.514714 | 3.2:-70321528 | None:intergenic |
| ACACCTTTGAACCGGTCCTC+AGG | 0.515728 | 3.2:-70315348 | None:intergenic |
| AGATGGAGCTGTGCACAGTT+GGG | 0.516554 | 3.2:+70321266 | MS.gene25815:CDS |
| AGTAAAGAAGTAATTCTTCC+CGG | 0.517752 | 3.2:+70322864 | MS.gene25815:CDS |
| CTCTTGCTTCTAAAGAAGAA+TGG | 0.520154 | 3.2:+70310520 | MS.gene25815:CDS |
| GCCACAAGGCCCATTGAAGA+AGG | 0.521062 | 3.2:+70322798 | MS.gene25815:CDS |
| TCTACAGTAGGAGGGTTAGG+AGG | 0.521278 | 3.2:+70320992 | MS.gene25815:CDS |
| TATCCTGAGGACCGGTTCAA+AGG | 0.525491 | 3.2:+70315345 | MS.gene25815:CDS |
| AGGCAGGCACCTATGTCAAA+CGG | 0.526546 | 3.2:-70322921 | None:intergenic |
| TGAACTGGACCTGAGGGTCC+AGG | 0.526611 | 3.2:-70320800 | None:intergenic |
| AGTATGTTTGCCGTGTAATG+AGG | 0.527446 | 3.2:+70312334 | MS.gene25815:CDS |
| ATAGTTGAAGGGTCAGATGT+TGG | 0.529636 | 3.2:+70320626 | MS.gene25815:CDS |
| TATATTGGCATCAACTATGA+AGG | 0.530301 | 3.2:-70318198 | None:intergenic |
| AACAGAACCCATCATAAGAT+AGG | 0.531008 | 3.2:-70318225 | None:intergenic |
| TTACAACATCAGGATCAAAC+AGG | 0.531894 | 3.2:-70315278 | None:intergenic |
| CTTGCAAAGATCAGAAATGC+TGG | 0.533516 | 3.2:-70320192 | None:intergenic |
| TCACAACCAGCCAATGGAGC+AGG | 0.533833 | 3.2:-70320941 | None:intergenic |
| CGATTAAAGAAGAATGTCCA+TGG | 0.534033 | 3.2:+70310469 | MS.gene25815:CDS |
| CAGCATTTCTGATCTTTGCA+AGG | 0.534313 | 3.2:+70320193 | MS.gene25815:CDS |
| GCATAAAGAAGAGACTTCAA+TGG | 0.536765 | 3.2:+70311814 | MS.gene25815:CDS |
| GGACATCAAGTGAGCATCAA+AGG | 0.537117 | 3.2:+70321656 | MS.gene25815:CDS |
| CAGCGTTCATTAAGGGCAAA+GGG | 0.537652 | 3.2:-70321153 | None:intergenic |
| TTCCGGTGTATCCTGAGGAC+CGG | 0.537965 | 3.2:+70315337 | MS.gene25815:CDS |
| TTGCAAGGATCTTAGCACTC+TGG | 0.538470 | 3.2:+70320208 | MS.gene25815:CDS |
| TGAATTGGCAACAACTCTAC+AGG | 0.539643 | 3.2:+70317929 | MS.gene25815:CDS |
| TTCTTCAATGGGCCTTGTGG+CGG | 0.541065 | 3.2:-70322796 | None:intergenic |
| AAAATTTGAGGGAGAACTGC+AGG | 0.542318 | 3.2:+70320238 | MS.gene25815:CDS |
| CTACAGTAGGAGGGTTAGGA+GGG | 0.545020 | 3.2:+70320993 | MS.gene25815:CDS |
| GTATTAGAATGTCTACAATC+AGG | 0.547162 | 3.2:+70320293 | MS.gene25815:CDS |
| GATGGCTCAATTGTTCCTGT+TGG | 0.548639 | 3.2:+70321175 | MS.gene25815:CDS |
| GGAGTCATAAAGGAATATGA+AGG | 0.553683 | 3.2:-70320833 | None:intergenic |
| GTTGTGAGAAAGCTCTCATA+TGG | 0.553729 | 3.2:+70320957 | MS.gene25815:CDS |
| GGCTTCGTAAACAGGAGATA+AGG | 0.554589 | 3.2:-70322775 | None:intergenic |
| ATACCGATAATGATATTCAA+GGG | 0.556619 | 3.2:+70318123 | MS.gene25815:CDS |
| TCAGCGTTCATTAAGGGCAA+AGG | 0.556714 | 3.2:-70321154 | None:intergenic |
| ATAACATCCTATCTTATGAT+GGG | 0.557312 | 3.2:+70318218 | MS.gene25815:CDS |
| CATTTGTATGTCGATTGGGA+TGG | 0.558034 | 3.2:+70317982 | MS.gene25815:CDS |
| TGGTAAAGTACCTTAGCAGC+AGG | 0.560817 | 3.2:-70321541 | None:intergenic |
| GGAAAATCTACAGGTTGCGT+TGG | 0.563051 | 3.2:-70314988 | None:intergenic |
| TTGCCCTTAATGAACGCTGA+TGG | 0.563533 | 3.2:+70321157 | MS.gene25815:CDS |
| TATAGTACCAATTTCATCCA+AGG | 0.567272 | 3.2:-70320854 | None:intergenic |
| TTTCCTATTGAATCTTGGTG+GGG | 0.568213 | 3.2:+70315006 | MS.gene25815:CDS |
| GCCTTCTTCAATGGGCCTTG+TGG | 0.570611 | 3.2:-70322799 | None:intergenic |
| GTGTAATAATATATGTAGAA+GGG | 0.571575 | 3.2:+70321408 | MS.gene25815:CDS |
| AAATTTGGGATGCTGTCGTA+AGG | 0.573117 | 3.2:-70313946 | None:intergenic |
| GATTCAATAGGAAAATCTAC+AGG | 0.574036 | 3.2:-70314997 | None:intergenic |
| TTTATAGAAACTCTCCGAAG+AGG | 0.575140 | 3.2:+70315206 | MS.gene25815:intron |
| TCTTGGGATGGTTCTACAGT+AGG | 0.576320 | 3.2:+70320980 | MS.gene25815:CDS |
| ATCCCAAACTCAACACTCAA+CGG | 0.576716 | 3.2:-70321364 | None:intergenic |
| GGAGAGGAAGGGTCCACTAG+TGG | 0.577054 | 3.2:-70321625 | None:intergenic |
| TTCATTCGAAACAACAAACA+CGG | 0.577743 | 3.2:-70317892 | None:intergenic |
| GCTTTCTCACAACCAGCCAA+TGG | 0.581899 | 3.2:-70320947 | None:intergenic |
| ATTGCACTTCTTGGCGACCC+AGG | 0.583058 | 3.2:-70318053 | None:intergenic |
| ACGAAGAAACAAACGATCAA+GGG | 0.584084 | 3.2:-70320726 | None:intergenic |
| TCTATTATATTGGAAGGCGA+TGG | 0.587264 | 3.2:+70320548 | MS.gene25815:CDS |
| ACCAAAATGAACTGGACCTG+AGG | 0.589219 | 3.2:-70320807 | None:intergenic |
| TGATGTTCCGGTGTATCCTG+AGG | 0.592043 | 3.2:+70315332 | MS.gene25815:CDS |
| GAGTTGCACCCGTTTGACAT+AGG | 0.593668 | 3.2:+70322912 | MS.gene25815:CDS |
| CAACTTATGAACTATGCTAG+TGG | 0.594737 | 3.2:+70321592 | MS.gene25815:CDS |
| TGCTGTTACGCTCTACGAAG+CGG | 0.594742 | 3.2:+70320154 | MS.gene25815:CDS |
| CCAGGAAGAACTGATGATTG+AGG | 0.599852 | 3.2:-70320782 | None:intergenic |
| TGATGTCCCTGAAATGGGAG+AGG | 0.600804 | 3.2:-70321641 | None:intergenic |
| ACGAGAAATTAATAGTTGAA+GGG | 0.602033 | 3.2:+70320615 | MS.gene25815:CDS |
| CTCTTAGGAAGATTCTCCCA+TGG | 0.602500 | 3.2:-70310486 | None:intergenic |
| ATAGAACTGGTTCCATCACT+GGG | 0.604378 | 3.2:-70320530 | None:intergenic |
| CTGTTTACGAAGCCGCCACA+AGG | 0.605631 | 3.2:+70322784 | MS.gene25815:CDS |
| ATATCACAATAATATCTGAA+AGG | 0.608096 | 3.2:-70312363 | None:intergenic |
| TCAACCTATTTCCTTAATAG+CGG | 0.609470 | 3.2:+70322953 | MS.gene25815:CDS |
| GAGTCATAAAGGAATATGAA+GGG | 0.610685 | 3.2:-70320832 | None:intergenic |
| TCTCAGCTTCTGTAATACCC+GGG | 0.614024 | 3.2:-70320436 | None:intergenic |
| CTTGAAGGAAACTTAGTGAA+GGG | 0.614581 | 3.2:+70321019 | MS.gene25815:CDS |
| GTATGTTTGCCGTGTAATGA+GGG | 0.615210 | 3.2:+70312335 | MS.gene25815:CDS |
| TGCTTCTGATGTGAAAGTTG+AGG | 0.617364 | 3.2:+70320322 | MS.gene25815:CDS |
| AAATTTGGAGAAGTCTGCAG+AGG | 0.617715 | 3.2:+70320484 | MS.gene25815:CDS |
| ATGTTGGAACAGAATTGAAG+AGG | 0.618020 | 3.2:+70320642 | MS.gene25815:CDS |
| CATTAAACAGTCTAAGAAGG+CGG | 0.619536 | 3.2:-70321294 | None:intergenic |
| TGGAAGATGGAATCCACTAG+TGG | 0.623660 | 3.2:+70321612 | MS.gene25815:CDS |
| AAGGCGACACCCTCATTACA+CGG | 0.624283 | 3.2:-70312344 | None:intergenic |
| CTATATTCGACTGTAGCTAG+TGG | 0.625106 | 3.2:+70320872 | MS.gene25815:CDS |
| AAGATATGATGCGTTACTTG+CGG | 0.631043 | 3.2:+70311883 | MS.gene25815:CDS |
| TAATAATATATGTAGAAGGG+TGG | 0.631514 | 3.2:+70321411 | MS.gene25815:CDS |
| GCTCTCATATGGTCTTGGGA+TGG | 0.634656 | 3.2:+70320968 | MS.gene25815:CDS |
| CCAAAATGAACTGGACCTGA+GGG | 0.634664 | 3.2:-70320806 | None:intergenic |
| GGGATGGTTCTACAGTAGGA+GGG | 0.635486 | 3.2:+70320984 | MS.gene25815:CDS |
| TTAAGCTTTGCATTGCACGA+TGG | 0.635660 | 3.2:-70321474 | None:intergenic |
| AACCGGTCCTCAGGATACAC+CGG | 0.635967 | 3.2:-70315339 | None:intergenic |
| TTTGATTGCTAAAGATGCCG+AGG | 0.638309 | 3.2:-70322988 | None:intergenic |
| GCTTGAAGGAAACTTAGTGA+AGG | 0.641698 | 3.2:+70321018 | MS.gene25815:CDS |
| TGCTAAGGTACTTTACCAGA+AGG | 0.641891 | 3.2:+70321546 | MS.gene25815:CDS |
| TCCCTGAAATGGGAGAGGAA+GGG | 0.646262 | 3.2:-70321636 | None:intergenic |
| TACCGATAATGATATTCAAG+GGG | 0.646599 | 3.2:+70318124 | MS.gene25815:CDS |
| GCGTGCTCCAGTTACAGTTG+AGG | 0.646877 | 3.2:+70310428 | MS.gene25815:CDS |
| TATATTCGACTGTAGCTAGT+GGG | 0.647598 | 3.2:+70320873 | MS.gene25815:CDS |
| AGTCATAAAGGAATATGAAG+GGG | 0.649515 | 3.2:-70320831 | None:intergenic |
| AGAATTAGGAATATGCGAAG+AGG | 0.649847 | 3.2:+70321201 | MS.gene25815:CDS |
| TATTGACAAAATATGTAAGG+AGG | 0.652624 | 3.2:+70315239 | MS.gene25815:CDS |
| TTAAGATCAAACTTACTGAG+AGG | 0.654189 | 3.2:-70321100 | None:intergenic |
| GATTAAAGAAGAATGTCCAT+GGG | 0.658909 | 3.2:+70310470 | MS.gene25815:CDS |
| TCTGATGTGAAAGTTGAGGA+AGG | 0.665695 | 3.2:+70320326 | MS.gene25815:CDS |
| AAGGATCTTAGCACTCTGGA+AGG | 0.665723 | 3.2:+70320212 | MS.gene25815:CDS |
| GTCATAAAGGAATATGAAGG+GGG | 0.671102 | 3.2:-70320830 | None:intergenic |
| TTCAAGATACAAGTATACCT+GGG | 0.673923 | 3.2:+70318036 | MS.gene25815:CDS |
| GACATTCTAATACACAACGC+AGG | 0.680857 | 3.2:-70320283 | None:intergenic |
| TTAGAATGTCTACAATCAGG+CGG | 0.691924 | 3.2:+70320296 | MS.gene25815:CDS |
| ACTGAGAGGCAGCACCAGAA+CGG | 0.695094 | 3.2:-70321086 | None:intergenic |
| AAATAGGTTGACGTGCCTGG+AGG | 0.704721 | 3.2:-70322941 | None:intergenic |
| ACGCGAGTATAGGCCGAACG+AGG | 0.704994 | 3.2:-70318173 | None:intergenic |
| GTAAAGGGTCTCTATAGACG+CGG | 0.709469 | 3.2:+70315297 | MS.gene25815:CDS |
| GAGAAGCCAAGCTTTCACAG+CGG | 0.801157 | 3.2:-70320691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 70310423 | 70323013 | 70310423 | ID=MS.gene25815 |
| chr3.2 | mRNA | 70310423 | 70323013 | 70310423 | ID=MS.gene25815.t1;Parent=MS.gene25815 |
| chr3.2 | exon | 70310423 | 70310550 | 70310423 | ID=MS.gene25815.t1.exon1;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70310423 | 70310550 | 70310423 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70311800 | 70311917 | 70311800 | ID=MS.gene25815.t1.exon2;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70311800 | 70311917 | 70311800 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70312312 | 70312408 | 70312312 | ID=MS.gene25815.t1.exon3;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70312312 | 70312408 | 70312312 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70313941 | 70314047 | 70313941 | ID=MS.gene25815.t1.exon4;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70313941 | 70314047 | 70313941 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70314943 | 70315065 | 70314943 | ID=MS.gene25815.t1.exon5;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70314943 | 70315065 | 70314943 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70315213 | 70315366 | 70315213 | ID=MS.gene25815.t1.exon6;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70315213 | 70315366 | 70315213 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70317708 | 70317768 | 70317708 | ID=MS.gene25815.t1.exon7;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70317708 | 70317768 | 70317708 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70317881 | 70318254 | 70317881 | ID=MS.gene25815.t1.exon8;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70317881 | 70318254 | 70317881 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70320141 | 70321743 | 70320141 | ID=MS.gene25815.t1.exon9;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70320141 | 70321743 | 70320141 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| chr3.2 | exon | 70322767 | 70323013 | 70322767 | ID=MS.gene25815.t1.exon10;Parent=MS.gene25815.t1 |
| chr3.2 | CDS | 70322767 | 70323013 | 70322767 | ID=cds.MS.gene25815.t1;Parent=MS.gene25815.t1 |
| Gene Sequence |
| Protein sequence |
