Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056700.t1 | XP_003606893.1 | 99 | 885 | 7 | 1 | 1 | 883 | 1 | 885 | 0.00E+00 | 1689.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056700.t1 | Q0WW26 | 85.1 | 887 | 127 | 3 | 1 | 883 | 1 | 886 | 0.0e+00 | 1468.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056700.t1 | G7JG50 | 99.0 | 885 | 7 | 1 | 1 | 883 | 1 | 885 | 0.0e+00 | 1689.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056570 | MS.gene056700 | 0.803351 | 3.63E-49 | -1.69E-46 |
MS.gene056700 | MS.gene062886 | 0.862768 | 4.01E-64 | -1.69E-46 |
MS.gene056700 | MS.gene062887 | 0.868392 | 6.76E-66 | -1.69E-46 |
MS.gene056700 | MS.gene062888 | 0.868362 | 6.91E-66 | -1.69E-46 |
MS.gene056700 | MS.gene06325 | 0.81777 | 2.77E-52 | -1.69E-46 |
MS.gene056700 | MS.gene064893 | 0.841928 | 3.53E-58 | -1.69E-46 |
MS.gene056700 | MS.gene066107 | 0.813467 | 2.52E-51 | -1.69E-46 |
MS.gene056700 | MS.gene25815 | 0.820265 | 7.51E-53 | -1.69E-46 |
MS.gene056700 | MS.gene26731 | 0.817672 | 2.92E-52 | -1.69E-46 |
MS.gene056700 | MS.gene28115 | 0.81058 | 1.07E-50 | -1.69E-46 |
MS.gene056700 | MS.gene29353 | 0.812185 | 4.82E-51 | -1.69E-46 |
MS.gene056700 | MS.gene30247 | 0.801069 | 1.07E-48 | -1.69E-46 |
MS.gene056700 | MS.gene33526 | 0.802761 | 4.81E-49 | -1.69E-46 |
MS.gene056700 | MS.gene34086 | 0.813419 | 2.58E-51 | -1.69E-46 |
MS.gene056700 | MS.gene42154 | 0.819172 | 1.34E-52 | -1.69E-46 |
MS.gene056700 | MS.gene44922 | 0.805709 | 1.17E-49 | -1.69E-46 |
MS.gene056700 | MS.gene47890 | 0.88036 | 5.85E-70 | -1.69E-46 |
MS.gene056700 | MS.gene50077 | 0.971703 | 1.39E-133 | -1.69E-46 |
MS.gene056700 | MS.gene50735 | 0.827643 | 1.40E-54 | -1.69E-46 |
MS.gene056700 | MS.gene55148 | 0.800235 | 1.59E-48 | -1.69E-46 |
MS.gene056700 | MS.gene55149 | 0.804052 | 2.60E-49 | -1.69E-46 |
MS.gene056700 | MS.gene55846 | 0.809743 | 1.63E-50 | -1.69E-46 |
MS.gene056700 | MS.gene70350 | 0.840686 | 7.49E-58 | -1.69E-46 |
MS.gene056700 | MS.gene70796 | 0.830511 | 2.82E-55 | -1.69E-46 |
MS.gene056700 | MS.gene82544 | 0.833281 | 5.84E-56 | -1.69E-46 |
MS.gene056700 | MS.gene87319 | 0.812369 | 4.39E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene011220 | MS.gene056700 | PPI |
MS.gene07800 | MS.gene056700 | PPI |
MS.gene056700 | MS.gene74983 | PPI |
MS.gene021666 | MS.gene056700 | PPI |
MS.gene056700 | MS.gene37394 | PPI |
MS.gene056700 | MS.gene005784 | PPI |
MS.gene74608 | MS.gene056700 | PPI |
MS.gene74984 | MS.gene056700 | PPI |
MS.gene30333 | MS.gene056700 | PPI |
MS.gene003673 | MS.gene056700 | PPI |
MS.gene032230 | MS.gene056700 | PPI |
MS.gene056700 | MS.gene68093 | PPI |
MS.gene056700 | MS.gene63417 | PPI |
MS.gene056700 | MS.gene003223 | PPI |
MS.gene029334 | MS.gene056700 | PPI |
MS.gene74768 | MS.gene056700 | PPI |
MS.gene062888 | MS.gene056700 | PPI |
MS.gene21432 | MS.gene056700 | PPI |
MS.gene056700 | MS.gene003672 | PPI |
MS.gene23325 | MS.gene056700 | PPI |
MS.gene065067 | MS.gene056700 | PPI |
MS.gene02023 | MS.gene056700 | PPI |
MS.gene76243 | MS.gene056700 | PPI |
MS.gene029335 | MS.gene056700 | PPI |
MS.gene056700 | MS.gene50735 | PPI |
MS.gene065068 | MS.gene056700 | PPI |
MS.gene043279 | MS.gene056700 | PPI |
MS.gene76242 | MS.gene056700 | PPI |
MS.gene79635 | MS.gene056700 | PPI |
MS.gene02789 | MS.gene056700 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056700.t1 | MTR_4g069920 | 98.983 | 885 | 7 | 1 | 1 | 883 | 1 | 885 | 0.0 | 1787 |
MS.gene056700.t1 | MTR_3g116480 | 89.527 | 888 | 87 | 3 | 1 | 883 | 1 | 887 | 0.0 | 1635 |
MS.gene056700.t1 | MTR_4g076210 | 19.969 | 636 | 440 | 17 | 21 | 611 | 9 | 620 | 1.83e-15 | 81.6 |
MS.gene056700.t1 | MTR_4g008250 | 22.816 | 412 | 267 | 13 | 48 | 433 | 36 | 422 | 1.22e-11 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056700.t1 | AT4G34450 | 85.118 | 887 | 127 | 3 | 1 | 883 | 1 | 886 | 0.0 | 1558 |
MS.gene056700.t1 | AT2G16200 | 63.768 | 69 | 25 | 0 | 815 | 883 | 1 | 69 | 1.93e-24 | 97.8 |
MS.gene056700.t1 | AT2G16200 | 63.077 | 65 | 24 | 0 | 819 | 883 | 19 | 83 | 4.44e-22 | 91.7 |
MS.gene056700.t1 | AT4G23460 | 19.713 | 558 | 393 | 16 | 21 | 549 | 9 | 540 | 9.38e-14 | 76.3 |
MS.gene056700.t1 | AT4G11380 | 20.188 | 639 | 440 | 19 | 21 | 613 | 9 | 623 | 1.27e-12 | 72.4 |
MS.gene056700.t1 | AT4G11380 | 20.323 | 620 | 424 | 19 | 40 | 613 | 50 | 645 | 1.73e-12 | 72.0 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTCAAATACCTCTCAATT+TGG | 0.170952 | 4.3:+35611836 | None:intergenic |
ATTTCCTGAGTAACATTCTT+AGG | 0.185985 | 4.3:-35609706 | MS.gene056700:CDS |
GTACTTGTGCGGCTGTCTTT+TGG | 0.253038 | 4.3:-35606601 | MS.gene056700:CDS |
TGCTTCTGTTGATGGATTAA+AGG | 0.267375 | 4.3:-35609319 | MS.gene056700:intron |
ATCAACAGAAGCACCAAATT+TGG | 0.272603 | 4.3:+35609329 | None:intergenic |
AATCATAAGGAAGAGATCTT+AGG | 0.276012 | 4.3:+35608234 | None:intergenic |
GGGAAAGTTCCTTTATTATC+AGG | 0.294554 | 4.3:+35612113 | None:intergenic |
CTCGGCTAGTTACACCATTA+AGG | 0.316336 | 4.3:+35610410 | None:intergenic |
CACTAACTGCAACATTGATA+TGG | 0.316771 | 4.3:-35610051 | MS.gene056700:CDS |
CACAATACCCGAACAACTAT+TGG | 0.321464 | 4.3:-35608403 | MS.gene056700:CDS |
TCATCCACTCGTTCAGAATC+AGG | 0.322426 | 4.3:+35607798 | None:intergenic |
TTTCAAATACCTCTCAATTT+GGG | 0.330735 | 4.3:+35611837 | None:intergenic |
ATTCCTGAGTTTGCAAACTT+TGG | 0.335169 | 4.3:-35608647 | MS.gene056700:CDS |
GTGTGGCAATGCTTCTGTTC+TGG | 0.335873 | 4.3:+35610012 | None:intergenic |
AATACTGTCATCACTCTTCT+TGG | 0.336080 | 4.3:-35607735 | MS.gene056700:CDS |
TCAGGAAATATTACACAATC+AGG | 0.339131 | 4.3:-35610520 | MS.gene056700:CDS |
ACATCTTCCAATAGTTGTTC+GGG | 0.350910 | 4.3:+35608396 | None:intergenic |
TACATCTTCCAATAGTTGTT+CGG | 0.354992 | 4.3:+35608395 | None:intergenic |
CTCCACTTCCTTGGCATTGA+AGG | 0.364156 | 4.3:-35609450 | MS.gene056700:CDS |
ACTGTTATACCTACTGAATC+AGG | 0.365100 | 4.3:-35612357 | MS.gene056700:CDS |
ATGCCATTCGTGTGCTTTGT+CGG | 0.366102 | 4.3:-35611882 | MS.gene056700:CDS |
AAATTTGGTGCTTCTGTTGA+TGG | 0.368371 | 4.3:-35609327 | MS.gene056700:CDS |
TTCCTGAGTTTGCAAACTTT+GGG | 0.370603 | 4.3:-35608646 | MS.gene056700:CDS |
AAGGTGGAGCAATGAGGTTC+AGG | 0.374504 | 4.3:-35611637 | MS.gene056700:CDS |
AAGGCAATTACAGACCTTAA+TGG | 0.375353 | 4.3:-35610424 | MS.gene056700:CDS |
TTTACCAGGGGCTTTCTTCT+CGG | 0.376153 | 4.3:+35608748 | None:intergenic |
CAAATCCTGAGATTGTAAAA+AGG | 0.381855 | 4.3:-35611656 | MS.gene056700:CDS |
AATATACCGAATATATTTGC+TGG | 0.382125 | 4.3:+35609410 | None:intergenic |
GTGAGCACACTAGCCAAATT+TGG | 0.386077 | 4.3:-35609342 | MS.gene056700:CDS |
TGATATCCCGCTCGTCAATC+TGG | 0.391883 | 4.3:-35608923 | MS.gene056700:CDS |
CCAGATGTTGGCAATCCCTC+AGG | 0.396127 | 4.3:+35608179 | None:intergenic |
AGGGCCGCACTTGCAACAAC+TGG | 0.399353 | 4.3:+35611793 | None:intergenic |
AACCCACTTTCCTTAGCATC+AGG | 0.400667 | 4.3:+35609617 | None:intergenic |
GGCAAGAGGCTGAGACTCCT+TGG | 0.401450 | 4.3:+35608769 | None:intergenic |
CGCGCTGGCTTTGCTACATC+AGG | 0.401512 | 4.3:-35611577 | MS.gene056700:intron |
ACTTTCAAGAAAATCATAGA+AGG | 0.405493 | 4.3:+35610489 | None:intergenic |
AGCTGAAGAACAGTGATTGC+TGG | 0.407442 | 4.3:+35610379 | None:intergenic |
ATCTCGAGAATGCAACTGTT+AGG | 0.414312 | 4.3:-35609374 | MS.gene056700:CDS |
CCTGAGGGATTGCCAACATC+TGG | 0.415471 | 4.3:-35608179 | MS.gene056700:CDS |
ATAGTAAGACTGATATGTAT+AGG | 0.417992 | 4.3:-35611909 | MS.gene056700:CDS |
TCTGAGATTTATTGTTAAAG+AGG | 0.421358 | 4.3:-35608141 | MS.gene056700:intron |
GGGAAGTGTTCGCTCACCTT+TGG | 0.422783 | 4.3:-35610666 | MS.gene056700:CDS |
GCTTCGGACAAGCCTTCCCT+TGG | 0.423385 | 4.3:+35607762 | None:intergenic |
TTAGAAAACTTTCCAGATGT+TGG | 0.424560 | 4.3:+35608167 | None:intergenic |
TTAACCCAAGATCTCGAGAT+TGG | 0.432181 | 4.3:+35612149 | None:intergenic |
AATGGTGTACCTGATAATAA+AGG | 0.432582 | 4.3:-35612122 | MS.gene056700:CDS |
ATCATAAGGAAGAGATCTTA+GGG | 0.434291 | 4.3:+35608235 | None:intergenic |
GAGAATGTCAACCTTGTTCA+AGG | 0.437546 | 4.3:+35610309 | None:intergenic |
CTGCAGGTTATTCGCGAGTC+AGG | 0.437953 | 4.3:-35610538 | MS.gene056700:intron |
TCTTTGACTGCAGGAGCCTT+CGG | 0.438517 | 4.3:-35608819 | MS.gene056700:intron |
CTTCAGCCTCGCCAGAGGTT+GGG | 0.441129 | 4.3:+35607931 | None:intergenic |
TAGTAAGACTGATATGTATA+GGG | 0.441624 | 4.3:-35611908 | MS.gene056700:CDS |
GGCTAGTGTGCTCACAGCAC+TGG | 0.441877 | 4.3:+35609350 | None:intergenic |
ACAGCAGCAAATCTCAATAC+TGG | 0.445031 | 4.3:+35610337 | None:intergenic |
GCAAGAGGCTGAGACTCCTT+GGG | 0.448565 | 4.3:+35608770 | None:intergenic |
GGGCTGTTCTTCAAGAGGCC+CGG | 0.450990 | 4.3:-35612687 | MS.gene056700:CDS |
TATTGTCGGGTGTATACATA+GGG | 0.451006 | 4.3:-35606633 | MS.gene056700:CDS |
TCTTCAGCCTCGCCAGAGGT+TGG | 0.451809 | 4.3:+35607930 | None:intergenic |
ATTCCAGGTTATTGTAGTTG+TGG | 0.452428 | 4.3:-35608300 | MS.gene056700:intron |
TTCCCAAAGTTTGCAAACTC+AGG | 0.454897 | 4.3:+35608644 | None:intergenic |
CTTTATCTTAACACACTTGG+AGG | 0.455687 | 4.3:-35608994 | MS.gene056700:CDS |
CCTTAGATACTCCACTTCCT+TGG | 0.456772 | 4.3:-35609459 | MS.gene056700:intron |
AATTTGTAATCTGCTTCATA+AGG | 0.458318 | 4.3:+35609940 | None:intergenic |
GTCCTTCAATGCCAAGGAAG+TGG | 0.461397 | 4.3:+35609448 | None:intergenic |
TGGACCCCAGCAAATATATT+CGG | 0.466206 | 4.3:-35609416 | MS.gene056700:CDS |
ACCTCTCAATTTGGGTAAGG+AGG | 0.467875 | 4.3:+35611845 | None:intergenic |
TTTCCTGAGTAACATTCTTA+GGG | 0.469038 | 4.3:-35609705 | MS.gene056700:CDS |
GGCTGTTCTTCAAGAGGCCC+GGG | 0.470531 | 4.3:-35612686 | MS.gene056700:CDS |
CTTCGGACAAGCCTTCCCTT+GGG | 0.471166 | 4.3:+35607763 | None:intergenic |
CATGTGTGTGACCTTGAATT+AGG | 0.473080 | 4.3:+35606658 | None:intergenic |
CGAGTGGATGAATACGGTCT+TGG | 0.474887 | 4.3:-35607786 | MS.gene056700:CDS |
AATCTCGAGATCTTGGGTTA+AGG | 0.475513 | 4.3:-35612147 | MS.gene056700:CDS |
AAAGGATGTTGCAATGAAAC+TGG | 0.479392 | 4.3:-35606566 | MS.gene056700:CDS |
GTTTGGGTGCTCCTCCTAGT+GGG | 0.481200 | 4.3:-35608712 | MS.gene056700:CDS |
ACTGCAGGAGCCTTCGGAAG+AGG | 0.482502 | 4.3:-35608813 | MS.gene056700:intron |
TCGACTAGCAGTTAGCAAAC+TGG | 0.484708 | 4.3:-35610705 | MS.gene056700:CDS |
TGATTGCTGGAGTTAATTCT+CGG | 0.485049 | 4.3:+35610392 | None:intergenic |
AACACTTCCCCTTGTCAAGC+TGG | 0.485369 | 4.3:+35610679 | None:intergenic |
TCGTGTGCTTTGTCGGATCA+CGG | 0.486313 | 4.3:-35611875 | MS.gene056700:CDS |
CCTTCGTCACAAGTCCGAAA+TGG | 0.488100 | 4.3:-35610464 | MS.gene056700:CDS |
CCCGCATATTTGTTCTGCTA+AGG | 0.488720 | 4.3:-35609192 | MS.gene056700:CDS |
TGACATTAATTTGGTGCCCA+AGG | 0.499560 | 4.3:-35608786 | MS.gene056700:CDS |
ATCCCTGATGCTAAGGAAAG+TGG | 0.499662 | 4.3:-35609620 | MS.gene056700:CDS |
TCTGCTTCAGTAAGCTCCAC+AGG | 0.503537 | 4.3:+35608498 | None:intergenic |
AATACCTCTCAATTTGGGTA+AGG | 0.504377 | 4.3:+35611842 | None:intergenic |
GATGCGAGGGACTTCCTCTT+CGG | 0.505539 | 4.3:-35608952 | MS.gene056700:CDS |
ATCTCGAGATTGGAAAAGCT+TGG | 0.506597 | 4.3:+35612159 | None:intergenic |
CTTGATCCGTTACACAAGTC+AGG | 0.507330 | 4.3:-35610633 | MS.gene056700:intron |
GACCAGGTTGACCCAACCTC+TGG | 0.507760 | 4.3:-35607942 | MS.gene056700:intron |
AGGAAGAGATCTTAGGGGTG+TGG | 0.508873 | 4.3:+35608241 | None:intergenic |
GGCAGATTACATATTGAAAG+TGG | 0.509324 | 4.3:-35607859 | MS.gene056700:CDS |
GTCACACACATGCTTATTGT+CGG | 0.512785 | 4.3:-35606647 | MS.gene056700:CDS |
GATGACAGTATTTACAGCTT+CGG | 0.513779 | 4.3:+35607746 | None:intergenic |
TCATATGAATCCACAGTGGA+TGG | 0.514753 | 4.3:+35608686 | None:intergenic |
AACCGCTTGCCACAATCTCA+TGG | 0.515317 | 4.3:+35606506 | None:intergenic |
AGTAACATTCTTAGGGAAGA+AGG | 0.515461 | 4.3:-35609698 | MS.gene056700:CDS |
ATATGAATCCACAGTGGATG+GGG | 0.517753 | 4.3:+35608688 | None:intergenic |
GTCTGCCCAGGTGAATCATA+AGG | 0.518091 | 4.3:+35608221 | None:intergenic |
AGATCTTGGGTTAAGGAGAA+TGG | 0.521392 | 4.3:-35612140 | MS.gene056700:CDS |
ATATACCGAATATATTTGCT+GGG | 0.521845 | 4.3:+35609411 | None:intergenic |
TTACCAGTCCTCAGCACCTG+TGG | 0.522599 | 4.3:-35608514 | MS.gene056700:intron |
TCTCGAGAATGCAACTGTTA+GGG | 0.522696 | 4.3:-35609373 | MS.gene056700:CDS |
ACACTTTATCTTAACACACT+TGG | 0.523186 | 4.3:-35608997 | MS.gene056700:CDS |
ATACTGGCTTGGAAGAACTT+AGG | 0.525861 | 4.3:+35610353 | None:intergenic |
ATGAATTACCTTCGTCGTCA+CGG | 0.525890 | 4.3:+35613362 | None:intergenic |
GGTTTGGGTGCTCCTCCTAG+TGG | 0.528947 | 4.3:-35608713 | MS.gene056700:CDS |
AGGTCGTCCCACCTAATTCA+AGG | 0.529115 | 4.3:-35606669 | MS.gene056700:CDS |
CTTCCCTAAGAATGTTACTC+AGG | 0.529688 | 4.3:+35609702 | None:intergenic |
CCTTAGCAGAACAAATATGC+GGG | 0.530435 | 4.3:+35609192 | None:intergenic |
GGGGCTTTCTTCTCGGCAAG+AGG | 0.532512 | 4.3:+35608755 | None:intergenic |
CATATGAATCCACAGTGGAT+GGG | 0.533554 | 4.3:+35608687 | None:intergenic |
TAGAGATATCCCTGATGCTA+AGG | 0.533771 | 4.3:-35609627 | MS.gene056700:CDS |
TACGGTCTTGGCCCAAGGGA+AGG | 0.536329 | 4.3:-35607774 | MS.gene056700:CDS |
TTGCAGTTAGTGACGGCCAT+TGG | 0.536634 | 4.3:+35610062 | None:intergenic |
TCTCTTCCTTATGATTCACC+TGG | 0.537388 | 4.3:-35608227 | MS.gene056700:CDS |
AATTTATCACCTGTGTCGAC+AGG | 0.539284 | 4.3:+35609552 | None:intergenic |
TGCTGTCCGCACCTTGAACA+AGG | 0.541322 | 4.3:-35610320 | MS.gene056700:intron |
TGGTCTCCAGATTGACGAGC+GGG | 0.541433 | 4.3:+35608917 | None:intergenic |
GCAAGTGCGGCCCTAGTTAG+TGG | 0.543102 | 4.3:-35611784 | MS.gene056700:CDS |
AGCAAATCTCAATACTGGCT+TGG | 0.543208 | 4.3:+35610342 | None:intergenic |
TCCCTGATGCTAAGGAAAGT+GGG | 0.543834 | 4.3:-35609619 | MS.gene056700:CDS |
CAGGAAATATTACACAATCA+GGG | 0.544297 | 4.3:-35610519 | MS.gene056700:CDS |
GTAGATGAATACCACTAACT+AGG | 0.544395 | 4.3:+35611773 | None:intergenic |
TCTTGGCATGCAACCTTGTG+AGG | 0.544482 | 4.3:-35607718 | MS.gene056700:intron |
TTATTGTCGGGTGTATACAT+AGG | 0.544529 | 4.3:-35606634 | MS.gene056700:CDS |
CATCCACTCGTTCAGAATCA+GGG | 0.547058 | 4.3:+35607799 | None:intergenic |
TCTGGCGAGGCTGAAGATGA+TGG | 0.547600 | 4.3:-35607924 | MS.gene056700:CDS |
TGTCTAATTTCAGGAATGCA+TGG | 0.550073 | 4.3:-35607833 | MS.gene056700:CDS |
ATCAAGAGACATTGGGCCAA+AGG | 0.551616 | 4.3:+35610650 | None:intergenic |
CGTTGAAGATGAATACCAGC+TGG | 0.552341 | 4.3:-35607901 | MS.gene056700:CDS |
TAGTGGTATTCATCTACTCC+AGG | 0.552999 | 4.3:-35611767 | MS.gene056700:intron |
CCTCTCAATTTGGGTAAGGA+GGG | 0.553566 | 4.3:+35611846 | None:intergenic |
TCTGAACGAGTGGATGAATA+CGG | 0.554007 | 4.3:-35607792 | MS.gene056700:CDS |
TCACACACATGCTTATTGTC+GGG | 0.555717 | 4.3:-35606646 | MS.gene056700:CDS |
ATGAATACGGTCTTGGCCCA+AGG | 0.555779 | 4.3:-35607779 | MS.gene056700:CDS |
TCTTGTACAATTTCACGCGC+TGG | 0.557651 | 4.3:-35611592 | MS.gene056700:CDS |
GCAGATTACATATTGAAAGT+GGG | 0.557921 | 4.3:-35607858 | MS.gene056700:CDS |
GTGCTTTGTCGGATCACGGA+TGG | 0.561141 | 4.3:-35611871 | MS.gene056700:CDS |
ATGATCCACAACTAGATGCT+AGG | 0.562098 | 4.3:-35612657 | MS.gene056700:CDS |
AGATGCTAGGAGATGTTCAC+AGG | 0.562547 | 4.3:-35612644 | MS.gene056700:intron |
TGTAACGGATCAAGAGACAT+TGG | 0.563004 | 4.3:+35610642 | None:intergenic |
GTAACGGATCAAGAGACATT+GGG | 0.565503 | 4.3:+35610643 | None:intergenic |
CAGGAATGCATGGGAAAGCA+TGG | 0.565865 | 4.3:-35607823 | MS.gene056700:CDS |
AACTGGTTACCAGCTTGACA+AGG | 0.570909 | 4.3:-35610688 | MS.gene056700:CDS |
TTTATAACCTCGTCTGCAGA+GGG | 0.571108 | 4.3:+35612091 | None:intergenic |
CGTCACGAGCTCTCTCATGA+AGG | 0.576960 | 4.3:-35611938 | MS.gene056700:CDS |
TATAACCTCGTCTGCAGAGG+GGG | 0.576990 | 4.3:+35612093 | None:intergenic |
CATCATTGGCTTACCTCACA+AGG | 0.578882 | 4.3:+35607705 | None:intergenic |
AACGCCACAAAAGTCTGCCC+AGG | 0.583006 | 4.3:+35608209 | None:intergenic |
TAGATGAATACCACTAACTA+GGG | 0.583080 | 4.3:+35611774 | None:intergenic |
GAATCCAGTTGTTGCAAGTG+CGG | 0.583487 | 4.3:-35611797 | MS.gene056700:CDS |
GTCTAATTTCAGGAATGCAT+GGG | 0.584699 | 4.3:-35607832 | MS.gene056700:CDS |
AAGAGTAGTAATAGCAAGTG+TGG | 0.586121 | 4.3:+35609995 | None:intergenic |
TGAATACGGTCTTGGCCCAA+GGG | 0.587422 | 4.3:-35607778 | MS.gene056700:CDS |
ATCAATGTTGCAGTTAGTGA+CGG | 0.589023 | 4.3:+35610055 | None:intergenic |
GGATATCAAGTGAGCCGAAG+AGG | 0.589509 | 4.3:+35608938 | None:intergenic |
TCATCGTCTTTCTTGATAAG+CGG | 0.590697 | 4.3:+35613385 | None:intergenic |
GTGTGTGACCTTGAATTAGG+TGG | 0.595130 | 4.3:+35606661 | None:intergenic |
ATTTATAACCTCGTCTGCAG+AGG | 0.595326 | 4.3:+35612090 | None:intergenic |
CAGATTACATATTGAAAGTG+GGG | 0.600224 | 4.3:-35607857 | MS.gene056700:CDS |
CATCTCCTAGCATCTAGTTG+TGG | 0.601531 | 4.3:+35612652 | None:intergenic |
GACGATGACCGTGACGACGA+AGG | 0.602361 | 4.3:-35613370 | MS.gene056700:intron |
TGAGATTGATAAAGATGCGA+GGG | 0.603374 | 4.3:-35608965 | MS.gene056700:CDS |
ACCCACTTTCCTTAGCATCA+GGG | 0.604088 | 4.3:+35609618 | None:intergenic |
TGTGGCGTTTGAGAAGCCTG+AGG | 0.604943 | 4.3:-35608195 | MS.gene056700:CDS |
ATGTCAAAAGCCTCTTCCGA+AGG | 0.609072 | 4.3:+35608803 | None:intergenic |
AGTAAGCTCCACAGGTGCTG+AGG | 0.610022 | 4.3:+35608506 | None:intergenic |
GTGGCGTTTGAGAAGCCTGA+GGG | 0.610662 | 4.3:-35608194 | MS.gene056700:CDS |
CCACTGTGGATTCATATGAA+AGG | 0.612693 | 4.3:-35608682 | MS.gene056700:CDS |
AACACACCTGACTTGTGTAA+CGG | 0.614135 | 4.3:+35610627 | None:intergenic |
ATCATCTTCAGCCTCGCCAG+AGG | 0.614172 | 4.3:+35607926 | None:intergenic |
ATGTCTCTCCCTGATTCAGT+AGG | 0.615879 | 4.3:+35612348 | None:intergenic |
GATCCGACAAAGCACACGAA+TGG | 0.616477 | 4.3:+35611879 | None:intergenic |
CTGTTATACCTACTGAATCA+GGG | 0.617217 | 4.3:-35612356 | MS.gene056700:CDS |
CTCTTCCTTATGATTCACCT+GGG | 0.617576 | 4.3:-35608226 | MS.gene056700:CDS |
GCTTGCCACAATCTCATGGA+TGG | 0.618369 | 4.3:+35606510 | None:intergenic |
CCATTTCGGACTTGTGACGA+AGG | 0.619323 | 4.3:+35610464 | None:intergenic |
CTTGCCGAGAAGAAAGCCCC+TGG | 0.619544 | 4.3:-35608752 | MS.gene056700:CDS |
ATACCAGCTGGAGGATCTAG+AGG | 0.621534 | 4.3:-35607889 | MS.gene056700:CDS |
GACAGGAAATGAATCAAGCG+TGG | 0.621967 | 4.3:-35609967 | MS.gene056700:CDS |
AACAGAAAAGAAAACTTCTG+TGG | 0.622899 | 4.3:+35612183 | None:intergenic |
GGTTGACCCAACCTCTGGCG+AGG | 0.622975 | 4.3:-35607937 | MS.gene056700:CDS |
AGGAAATATTACACAATCAG+GGG | 0.624728 | 4.3:-35610518 | MS.gene056700:CDS |
CAACCTCTAGATCCTCCAGC+TGG | 0.624747 | 4.3:+35607886 | None:intergenic |
ATCCATGAGATTGTGGCAAG+CGG | 0.630120 | 4.3:-35606508 | MS.gene056700:CDS |
TGATGCCATCCATGAGATTG+TGG | 0.630840 | 4.3:-35606515 | MS.gene056700:CDS |
AACATTCTTAGGGAAGAAGG+TGG | 0.632595 | 4.3:-35609695 | MS.gene056700:CDS |
GGAGGATCTAGAGGTTGTTG+CGG | 0.641056 | 4.3:-35607880 | MS.gene056700:CDS |
CTTTCAAGAAAATCATAGAA+GGG | 0.642452 | 4.3:+35610490 | None:intergenic |
CCCTCCTTACCCAAATTGAG+AGG | 0.643975 | 4.3:-35611846 | MS.gene056700:CDS |
GCCTTAGCAGAACAAATATG+CGG | 0.646975 | 4.3:+35609191 | None:intergenic |
AAGTGTGTTAAGATAAAGTG+TGG | 0.647393 | 4.3:+35608999 | None:intergenic |
AATCTTCAATGAACTCACAA+AGG | 0.647450 | 4.3:+35609588 | None:intergenic |
CTGAGATTGATAAAGATGCG+AGG | 0.648808 | 4.3:-35608966 | MS.gene056700:CDS |
GGAGCACCCAAACCACCAGT+TGG | 0.649439 | 4.3:+35608722 | None:intergenic |
ACTGGTTACCAGCTTGACAA+GGG | 0.650734 | 4.3:-35610687 | MS.gene056700:CDS |
TTGTCGGGTGTATACATAGG+GGG | 0.654756 | 4.3:-35606631 | MS.gene056700:CDS |
GGTGGCAATGACACATCCAA+TGG | 0.659109 | 4.3:-35610078 | MS.gene056700:CDS |
GGACCCTGATTCTGAACGAG+TGG | 0.660047 | 4.3:-35607802 | MS.gene056700:CDS |
TGTCAACCTTGTTCAAGGTG+CGG | 0.660820 | 4.3:+35610314 | None:intergenic |
CTGGTTACCAGCTTGACAAG+GGG | 0.662402 | 4.3:-35610686 | MS.gene056700:CDS |
TATGAATCCACAGTGGATGG+GGG | 0.670381 | 4.3:+35608689 | None:intergenic |
TGTGTGACCTTGAATTAGGT+GGG | 0.672239 | 4.3:+35606662 | None:intergenic |
ATTCACTTACCTGTCGACAC+AGG | 0.673693 | 4.3:-35609561 | MS.gene056700:intron |
GGGGTGTGAAGGTACTTGTG+CGG | 0.674790 | 4.3:-35606612 | MS.gene056700:CDS |
AGATTACATATTGAAAGTGG+GGG | 0.675495 | 4.3:-35607856 | MS.gene056700:CDS |
TGAAGATGAATACCAGCTGG+AGG | 0.678607 | 4.3:-35607898 | MS.gene056700:CDS |
CTTAGCAGAACAAATATGCG+GGG | 0.682439 | 4.3:+35609193 | None:intergenic |
TCAGGGAGAGACATTTACAA+AGG | 0.683582 | 4.3:-35612339 | MS.gene056700:intron |
TATACCGAATATATTTGCTG+GGG | 0.697705 | 4.3:+35609412 | None:intergenic |
CTGGTCTCCAGATTGACGAG+CGG | 0.703175 | 4.3:+35608916 | None:intergenic |
ATTGTCGGGTGTATACATAG+GGG | 0.715775 | 4.3:-35606632 | MS.gene056700:CDS |
CCTTTCATATGAATCCACAG+TGG | 0.729978 | 4.3:+35608682 | None:intergenic |
TCACTACTTGCAGGGCACAG+AGG | 0.740479 | 4.3:-35606689 | MS.gene056700:intron |
TTATAACCTCGTCTGCAGAG+GGG | 0.747009 | 4.3:+35612092 | None:intergenic |
TCATAAGGAAGAGATCTTAG+GGG | 0.753553 | 4.3:+35608236 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 35606504 | 35613416 | 35606504 | ID=MS.gene056700 |
chr4.3 | mRNA | 35606504 | 35613416 | 35606504 | ID=MS.gene056700.t1;Parent=MS.gene056700 |
chr4.3 | exon | 35613371 | 35613416 | 35613371 | ID=MS.gene056700.t1.exon1;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35613371 | 35613416 | 35613371 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35612645 | 35612742 | 35612645 | ID=MS.gene056700.t1.exon2;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35612645 | 35612742 | 35612645 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35612340 | 35612390 | 35612340 | ID=MS.gene056700.t1.exon3;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35612340 | 35612390 | 35612340 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35612099 | 35612212 | 35612099 | ID=MS.gene056700.t1.exon4;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35612099 | 35612212 | 35612099 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35611768 | 35611968 | 35611768 | ID=MS.gene056700.t1.exon5;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35611768 | 35611968 | 35611768 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35611578 | 35611679 | 35611578 | ID=MS.gene056700.t1.exon6;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35611578 | 35611679 | 35611578 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35610634 | 35610741 | 35610634 | ID=MS.gene056700.t1.exon7;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35610634 | 35610741 | 35610634 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35610321 | 35610554 | 35610321 | ID=MS.gene056700.t1.exon8;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35610321 | 35610554 | 35610321 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35609849 | 35610099 | 35609849 | ID=MS.gene056700.t1.exon9;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35609849 | 35610099 | 35609849 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35609562 | 35609733 | 35609562 | ID=MS.gene056700.t1.exon10;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35609562 | 35609733 | 35609562 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35609320 | 35609475 | 35609320 | ID=MS.gene056700.t1.exon11;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35609320 | 35609475 | 35609320 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35609165 | 35609215 | 35609165 | ID=MS.gene056700.t1.exon12;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35609165 | 35609215 | 35609165 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35608903 | 35609034 | 35608903 | ID=MS.gene056700.t1.exon13;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35608903 | 35609034 | 35608903 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35608634 | 35608828 | 35608634 | ID=MS.gene056700.t1.exon14;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35608634 | 35608828 | 35608634 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35608398 | 35608529 | 35608398 | ID=MS.gene056700.t1.exon15;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35608398 | 35608529 | 35608398 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35608142 | 35608315 | 35608142 | ID=MS.gene056700.t1.exon16;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35608142 | 35608315 | 35608142 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35607719 | 35607958 | 35607719 | ID=MS.gene056700.t1.exon17;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35607719 | 35607958 | 35607719 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
chr4.3 | exon | 35606504 | 35606698 | 35606504 | ID=MS.gene056700.t1.exon18;Parent=MS.gene056700.t1 |
chr4.3 | CDS | 35606504 | 35606698 | 35606504 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
Gene Sequence |
Protein sequence |