AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056700.t1 MTR_4g069920 98.983 885 7 1 1 883 1 885 0.0 1787
MS.gene056700.t1 MTR_3g116480 89.527 888 87 3 1 883 1 887 0.0 1635
MS.gene056700.t1 MTR_4g076210 19.969 636 440 17 21 611 9 620 1.83e-15 81.6
MS.gene056700.t1 MTR_4g008250 22.816 412 267 13 48 433 36 422 1.22e-11 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056700.t1 AT4G34450 85.118 887 127 3 1 883 1 886 0.0 1558
MS.gene056700.t1 AT2G16200 63.768 69 25 0 815 883 1 69 1.93e-24 97.8
MS.gene056700.t1 AT2G16200 63.077 65 24 0 819 883 19 83 4.44e-22 91.7
MS.gene056700.t1 AT4G23460 19.713 558 393 16 21 549 9 540 9.38e-14 76.3
MS.gene056700.t1 AT4G11380 20.188 639 440 19 21 613 9 623 1.27e-12 72.4
MS.gene056700.t1 AT4G11380 20.323 620 424 19 40 613 50 645 1.73e-12 72.0

Find 216 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCAAATACCTCTCAATT+TGG 0.170952 4.3:+35611836 None:intergenic
ATTTCCTGAGTAACATTCTT+AGG 0.185985 4.3:-35609706 MS.gene056700:CDS
GTACTTGTGCGGCTGTCTTT+TGG 0.253038 4.3:-35606601 MS.gene056700:CDS
TGCTTCTGTTGATGGATTAA+AGG 0.267375 4.3:-35609319 MS.gene056700:intron
ATCAACAGAAGCACCAAATT+TGG 0.272603 4.3:+35609329 None:intergenic
AATCATAAGGAAGAGATCTT+AGG 0.276012 4.3:+35608234 None:intergenic
GGGAAAGTTCCTTTATTATC+AGG 0.294554 4.3:+35612113 None:intergenic
CTCGGCTAGTTACACCATTA+AGG 0.316336 4.3:+35610410 None:intergenic
CACTAACTGCAACATTGATA+TGG 0.316771 4.3:-35610051 MS.gene056700:CDS
CACAATACCCGAACAACTAT+TGG 0.321464 4.3:-35608403 MS.gene056700:CDS
TCATCCACTCGTTCAGAATC+AGG 0.322426 4.3:+35607798 None:intergenic
TTTCAAATACCTCTCAATTT+GGG 0.330735 4.3:+35611837 None:intergenic
ATTCCTGAGTTTGCAAACTT+TGG 0.335169 4.3:-35608647 MS.gene056700:CDS
GTGTGGCAATGCTTCTGTTC+TGG 0.335873 4.3:+35610012 None:intergenic
AATACTGTCATCACTCTTCT+TGG 0.336080 4.3:-35607735 MS.gene056700:CDS
TCAGGAAATATTACACAATC+AGG 0.339131 4.3:-35610520 MS.gene056700:CDS
ACATCTTCCAATAGTTGTTC+GGG 0.350910 4.3:+35608396 None:intergenic
TACATCTTCCAATAGTTGTT+CGG 0.354992 4.3:+35608395 None:intergenic
CTCCACTTCCTTGGCATTGA+AGG 0.364156 4.3:-35609450 MS.gene056700:CDS
ACTGTTATACCTACTGAATC+AGG 0.365100 4.3:-35612357 MS.gene056700:CDS
ATGCCATTCGTGTGCTTTGT+CGG 0.366102 4.3:-35611882 MS.gene056700:CDS
AAATTTGGTGCTTCTGTTGA+TGG 0.368371 4.3:-35609327 MS.gene056700:CDS
TTCCTGAGTTTGCAAACTTT+GGG 0.370603 4.3:-35608646 MS.gene056700:CDS
AAGGTGGAGCAATGAGGTTC+AGG 0.374504 4.3:-35611637 MS.gene056700:CDS
AAGGCAATTACAGACCTTAA+TGG 0.375353 4.3:-35610424 MS.gene056700:CDS
TTTACCAGGGGCTTTCTTCT+CGG 0.376153 4.3:+35608748 None:intergenic
CAAATCCTGAGATTGTAAAA+AGG 0.381855 4.3:-35611656 MS.gene056700:CDS
AATATACCGAATATATTTGC+TGG 0.382125 4.3:+35609410 None:intergenic
GTGAGCACACTAGCCAAATT+TGG 0.386077 4.3:-35609342 MS.gene056700:CDS
TGATATCCCGCTCGTCAATC+TGG 0.391883 4.3:-35608923 MS.gene056700:CDS
CCAGATGTTGGCAATCCCTC+AGG 0.396127 4.3:+35608179 None:intergenic
AGGGCCGCACTTGCAACAAC+TGG 0.399353 4.3:+35611793 None:intergenic
AACCCACTTTCCTTAGCATC+AGG 0.400667 4.3:+35609617 None:intergenic
GGCAAGAGGCTGAGACTCCT+TGG 0.401450 4.3:+35608769 None:intergenic
CGCGCTGGCTTTGCTACATC+AGG 0.401512 4.3:-35611577 MS.gene056700:intron
ACTTTCAAGAAAATCATAGA+AGG 0.405493 4.3:+35610489 None:intergenic
AGCTGAAGAACAGTGATTGC+TGG 0.407442 4.3:+35610379 None:intergenic
ATCTCGAGAATGCAACTGTT+AGG 0.414312 4.3:-35609374 MS.gene056700:CDS
CCTGAGGGATTGCCAACATC+TGG 0.415471 4.3:-35608179 MS.gene056700:CDS
ATAGTAAGACTGATATGTAT+AGG 0.417992 4.3:-35611909 MS.gene056700:CDS
TCTGAGATTTATTGTTAAAG+AGG 0.421358 4.3:-35608141 MS.gene056700:intron
GGGAAGTGTTCGCTCACCTT+TGG 0.422783 4.3:-35610666 MS.gene056700:CDS
GCTTCGGACAAGCCTTCCCT+TGG 0.423385 4.3:+35607762 None:intergenic
TTAGAAAACTTTCCAGATGT+TGG 0.424560 4.3:+35608167 None:intergenic
TTAACCCAAGATCTCGAGAT+TGG 0.432181 4.3:+35612149 None:intergenic
AATGGTGTACCTGATAATAA+AGG 0.432582 4.3:-35612122 MS.gene056700:CDS
ATCATAAGGAAGAGATCTTA+GGG 0.434291 4.3:+35608235 None:intergenic
GAGAATGTCAACCTTGTTCA+AGG 0.437546 4.3:+35610309 None:intergenic
CTGCAGGTTATTCGCGAGTC+AGG 0.437953 4.3:-35610538 MS.gene056700:intron
TCTTTGACTGCAGGAGCCTT+CGG 0.438517 4.3:-35608819 MS.gene056700:intron
CTTCAGCCTCGCCAGAGGTT+GGG 0.441129 4.3:+35607931 None:intergenic
TAGTAAGACTGATATGTATA+GGG 0.441624 4.3:-35611908 MS.gene056700:CDS
GGCTAGTGTGCTCACAGCAC+TGG 0.441877 4.3:+35609350 None:intergenic
ACAGCAGCAAATCTCAATAC+TGG 0.445031 4.3:+35610337 None:intergenic
GCAAGAGGCTGAGACTCCTT+GGG 0.448565 4.3:+35608770 None:intergenic
GGGCTGTTCTTCAAGAGGCC+CGG 0.450990 4.3:-35612687 MS.gene056700:CDS
TATTGTCGGGTGTATACATA+GGG 0.451006 4.3:-35606633 MS.gene056700:CDS
TCTTCAGCCTCGCCAGAGGT+TGG 0.451809 4.3:+35607930 None:intergenic
ATTCCAGGTTATTGTAGTTG+TGG 0.452428 4.3:-35608300 MS.gene056700:intron
TTCCCAAAGTTTGCAAACTC+AGG 0.454897 4.3:+35608644 None:intergenic
CTTTATCTTAACACACTTGG+AGG 0.455687 4.3:-35608994 MS.gene056700:CDS
CCTTAGATACTCCACTTCCT+TGG 0.456772 4.3:-35609459 MS.gene056700:intron
AATTTGTAATCTGCTTCATA+AGG 0.458318 4.3:+35609940 None:intergenic
GTCCTTCAATGCCAAGGAAG+TGG 0.461397 4.3:+35609448 None:intergenic
TGGACCCCAGCAAATATATT+CGG 0.466206 4.3:-35609416 MS.gene056700:CDS
ACCTCTCAATTTGGGTAAGG+AGG 0.467875 4.3:+35611845 None:intergenic
TTTCCTGAGTAACATTCTTA+GGG 0.469038 4.3:-35609705 MS.gene056700:CDS
GGCTGTTCTTCAAGAGGCCC+GGG 0.470531 4.3:-35612686 MS.gene056700:CDS
CTTCGGACAAGCCTTCCCTT+GGG 0.471166 4.3:+35607763 None:intergenic
CATGTGTGTGACCTTGAATT+AGG 0.473080 4.3:+35606658 None:intergenic
CGAGTGGATGAATACGGTCT+TGG 0.474887 4.3:-35607786 MS.gene056700:CDS
AATCTCGAGATCTTGGGTTA+AGG 0.475513 4.3:-35612147 MS.gene056700:CDS
AAAGGATGTTGCAATGAAAC+TGG 0.479392 4.3:-35606566 MS.gene056700:CDS
GTTTGGGTGCTCCTCCTAGT+GGG 0.481200 4.3:-35608712 MS.gene056700:CDS
ACTGCAGGAGCCTTCGGAAG+AGG 0.482502 4.3:-35608813 MS.gene056700:intron
TCGACTAGCAGTTAGCAAAC+TGG 0.484708 4.3:-35610705 MS.gene056700:CDS
TGATTGCTGGAGTTAATTCT+CGG 0.485049 4.3:+35610392 None:intergenic
AACACTTCCCCTTGTCAAGC+TGG 0.485369 4.3:+35610679 None:intergenic
TCGTGTGCTTTGTCGGATCA+CGG 0.486313 4.3:-35611875 MS.gene056700:CDS
CCTTCGTCACAAGTCCGAAA+TGG 0.488100 4.3:-35610464 MS.gene056700:CDS
CCCGCATATTTGTTCTGCTA+AGG 0.488720 4.3:-35609192 MS.gene056700:CDS
TGACATTAATTTGGTGCCCA+AGG 0.499560 4.3:-35608786 MS.gene056700:CDS
ATCCCTGATGCTAAGGAAAG+TGG 0.499662 4.3:-35609620 MS.gene056700:CDS
TCTGCTTCAGTAAGCTCCAC+AGG 0.503537 4.3:+35608498 None:intergenic
AATACCTCTCAATTTGGGTA+AGG 0.504377 4.3:+35611842 None:intergenic
GATGCGAGGGACTTCCTCTT+CGG 0.505539 4.3:-35608952 MS.gene056700:CDS
ATCTCGAGATTGGAAAAGCT+TGG 0.506597 4.3:+35612159 None:intergenic
CTTGATCCGTTACACAAGTC+AGG 0.507330 4.3:-35610633 MS.gene056700:intron
GACCAGGTTGACCCAACCTC+TGG 0.507760 4.3:-35607942 MS.gene056700:intron
AGGAAGAGATCTTAGGGGTG+TGG 0.508873 4.3:+35608241 None:intergenic
GGCAGATTACATATTGAAAG+TGG 0.509324 4.3:-35607859 MS.gene056700:CDS
GTCACACACATGCTTATTGT+CGG 0.512785 4.3:-35606647 MS.gene056700:CDS
GATGACAGTATTTACAGCTT+CGG 0.513779 4.3:+35607746 None:intergenic
TCATATGAATCCACAGTGGA+TGG 0.514753 4.3:+35608686 None:intergenic
AACCGCTTGCCACAATCTCA+TGG 0.515317 4.3:+35606506 None:intergenic
AGTAACATTCTTAGGGAAGA+AGG 0.515461 4.3:-35609698 MS.gene056700:CDS
ATATGAATCCACAGTGGATG+GGG 0.517753 4.3:+35608688 None:intergenic
GTCTGCCCAGGTGAATCATA+AGG 0.518091 4.3:+35608221 None:intergenic
AGATCTTGGGTTAAGGAGAA+TGG 0.521392 4.3:-35612140 MS.gene056700:CDS
ATATACCGAATATATTTGCT+GGG 0.521845 4.3:+35609411 None:intergenic
TTACCAGTCCTCAGCACCTG+TGG 0.522599 4.3:-35608514 MS.gene056700:intron
TCTCGAGAATGCAACTGTTA+GGG 0.522696 4.3:-35609373 MS.gene056700:CDS
ACACTTTATCTTAACACACT+TGG 0.523186 4.3:-35608997 MS.gene056700:CDS
ATACTGGCTTGGAAGAACTT+AGG 0.525861 4.3:+35610353 None:intergenic
ATGAATTACCTTCGTCGTCA+CGG 0.525890 4.3:+35613362 None:intergenic
GGTTTGGGTGCTCCTCCTAG+TGG 0.528947 4.3:-35608713 MS.gene056700:CDS
AGGTCGTCCCACCTAATTCA+AGG 0.529115 4.3:-35606669 MS.gene056700:CDS
CTTCCCTAAGAATGTTACTC+AGG 0.529688 4.3:+35609702 None:intergenic
CCTTAGCAGAACAAATATGC+GGG 0.530435 4.3:+35609192 None:intergenic
GGGGCTTTCTTCTCGGCAAG+AGG 0.532512 4.3:+35608755 None:intergenic
CATATGAATCCACAGTGGAT+GGG 0.533554 4.3:+35608687 None:intergenic
TAGAGATATCCCTGATGCTA+AGG 0.533771 4.3:-35609627 MS.gene056700:CDS
TACGGTCTTGGCCCAAGGGA+AGG 0.536329 4.3:-35607774 MS.gene056700:CDS
TTGCAGTTAGTGACGGCCAT+TGG 0.536634 4.3:+35610062 None:intergenic
TCTCTTCCTTATGATTCACC+TGG 0.537388 4.3:-35608227 MS.gene056700:CDS
AATTTATCACCTGTGTCGAC+AGG 0.539284 4.3:+35609552 None:intergenic
TGCTGTCCGCACCTTGAACA+AGG 0.541322 4.3:-35610320 MS.gene056700:intron
TGGTCTCCAGATTGACGAGC+GGG 0.541433 4.3:+35608917 None:intergenic
GCAAGTGCGGCCCTAGTTAG+TGG 0.543102 4.3:-35611784 MS.gene056700:CDS
AGCAAATCTCAATACTGGCT+TGG 0.543208 4.3:+35610342 None:intergenic
TCCCTGATGCTAAGGAAAGT+GGG 0.543834 4.3:-35609619 MS.gene056700:CDS
CAGGAAATATTACACAATCA+GGG 0.544297 4.3:-35610519 MS.gene056700:CDS
GTAGATGAATACCACTAACT+AGG 0.544395 4.3:+35611773 None:intergenic
TCTTGGCATGCAACCTTGTG+AGG 0.544482 4.3:-35607718 MS.gene056700:intron
TTATTGTCGGGTGTATACAT+AGG 0.544529 4.3:-35606634 MS.gene056700:CDS
CATCCACTCGTTCAGAATCA+GGG 0.547058 4.3:+35607799 None:intergenic
TCTGGCGAGGCTGAAGATGA+TGG 0.547600 4.3:-35607924 MS.gene056700:CDS
TGTCTAATTTCAGGAATGCA+TGG 0.550073 4.3:-35607833 MS.gene056700:CDS
ATCAAGAGACATTGGGCCAA+AGG 0.551616 4.3:+35610650 None:intergenic
CGTTGAAGATGAATACCAGC+TGG 0.552341 4.3:-35607901 MS.gene056700:CDS
TAGTGGTATTCATCTACTCC+AGG 0.552999 4.3:-35611767 MS.gene056700:intron
CCTCTCAATTTGGGTAAGGA+GGG 0.553566 4.3:+35611846 None:intergenic
TCTGAACGAGTGGATGAATA+CGG 0.554007 4.3:-35607792 MS.gene056700:CDS
TCACACACATGCTTATTGTC+GGG 0.555717 4.3:-35606646 MS.gene056700:CDS
ATGAATACGGTCTTGGCCCA+AGG 0.555779 4.3:-35607779 MS.gene056700:CDS
TCTTGTACAATTTCACGCGC+TGG 0.557651 4.3:-35611592 MS.gene056700:CDS
GCAGATTACATATTGAAAGT+GGG 0.557921 4.3:-35607858 MS.gene056700:CDS
GTGCTTTGTCGGATCACGGA+TGG 0.561141 4.3:-35611871 MS.gene056700:CDS
ATGATCCACAACTAGATGCT+AGG 0.562098 4.3:-35612657 MS.gene056700:CDS
AGATGCTAGGAGATGTTCAC+AGG 0.562547 4.3:-35612644 MS.gene056700:intron
TGTAACGGATCAAGAGACAT+TGG 0.563004 4.3:+35610642 None:intergenic
GTAACGGATCAAGAGACATT+GGG 0.565503 4.3:+35610643 None:intergenic
CAGGAATGCATGGGAAAGCA+TGG 0.565865 4.3:-35607823 MS.gene056700:CDS
AACTGGTTACCAGCTTGACA+AGG 0.570909 4.3:-35610688 MS.gene056700:CDS
TTTATAACCTCGTCTGCAGA+GGG 0.571108 4.3:+35612091 None:intergenic
CGTCACGAGCTCTCTCATGA+AGG 0.576960 4.3:-35611938 MS.gene056700:CDS
TATAACCTCGTCTGCAGAGG+GGG 0.576990 4.3:+35612093 None:intergenic
CATCATTGGCTTACCTCACA+AGG 0.578882 4.3:+35607705 None:intergenic
AACGCCACAAAAGTCTGCCC+AGG 0.583006 4.3:+35608209 None:intergenic
TAGATGAATACCACTAACTA+GGG 0.583080 4.3:+35611774 None:intergenic
GAATCCAGTTGTTGCAAGTG+CGG 0.583487 4.3:-35611797 MS.gene056700:CDS
GTCTAATTTCAGGAATGCAT+GGG 0.584699 4.3:-35607832 MS.gene056700:CDS
AAGAGTAGTAATAGCAAGTG+TGG 0.586121 4.3:+35609995 None:intergenic
TGAATACGGTCTTGGCCCAA+GGG 0.587422 4.3:-35607778 MS.gene056700:CDS
ATCAATGTTGCAGTTAGTGA+CGG 0.589023 4.3:+35610055 None:intergenic
GGATATCAAGTGAGCCGAAG+AGG 0.589509 4.3:+35608938 None:intergenic
TCATCGTCTTTCTTGATAAG+CGG 0.590697 4.3:+35613385 None:intergenic
GTGTGTGACCTTGAATTAGG+TGG 0.595130 4.3:+35606661 None:intergenic
ATTTATAACCTCGTCTGCAG+AGG 0.595326 4.3:+35612090 None:intergenic
CAGATTACATATTGAAAGTG+GGG 0.600224 4.3:-35607857 MS.gene056700:CDS
CATCTCCTAGCATCTAGTTG+TGG 0.601531 4.3:+35612652 None:intergenic
GACGATGACCGTGACGACGA+AGG 0.602361 4.3:-35613370 MS.gene056700:intron
TGAGATTGATAAAGATGCGA+GGG 0.603374 4.3:-35608965 MS.gene056700:CDS
ACCCACTTTCCTTAGCATCA+GGG 0.604088 4.3:+35609618 None:intergenic
TGTGGCGTTTGAGAAGCCTG+AGG 0.604943 4.3:-35608195 MS.gene056700:CDS
ATGTCAAAAGCCTCTTCCGA+AGG 0.609072 4.3:+35608803 None:intergenic
AGTAAGCTCCACAGGTGCTG+AGG 0.610022 4.3:+35608506 None:intergenic
GTGGCGTTTGAGAAGCCTGA+GGG 0.610662 4.3:-35608194 MS.gene056700:CDS
CCACTGTGGATTCATATGAA+AGG 0.612693 4.3:-35608682 MS.gene056700:CDS
AACACACCTGACTTGTGTAA+CGG 0.614135 4.3:+35610627 None:intergenic
ATCATCTTCAGCCTCGCCAG+AGG 0.614172 4.3:+35607926 None:intergenic
ATGTCTCTCCCTGATTCAGT+AGG 0.615879 4.3:+35612348 None:intergenic
GATCCGACAAAGCACACGAA+TGG 0.616477 4.3:+35611879 None:intergenic
CTGTTATACCTACTGAATCA+GGG 0.617217 4.3:-35612356 MS.gene056700:CDS
CTCTTCCTTATGATTCACCT+GGG 0.617576 4.3:-35608226 MS.gene056700:CDS
GCTTGCCACAATCTCATGGA+TGG 0.618369 4.3:+35606510 None:intergenic
CCATTTCGGACTTGTGACGA+AGG 0.619323 4.3:+35610464 None:intergenic
CTTGCCGAGAAGAAAGCCCC+TGG 0.619544 4.3:-35608752 MS.gene056700:CDS
ATACCAGCTGGAGGATCTAG+AGG 0.621534 4.3:-35607889 MS.gene056700:CDS
GACAGGAAATGAATCAAGCG+TGG 0.621967 4.3:-35609967 MS.gene056700:CDS
AACAGAAAAGAAAACTTCTG+TGG 0.622899 4.3:+35612183 None:intergenic
GGTTGACCCAACCTCTGGCG+AGG 0.622975 4.3:-35607937 MS.gene056700:CDS
AGGAAATATTACACAATCAG+GGG 0.624728 4.3:-35610518 MS.gene056700:CDS
CAACCTCTAGATCCTCCAGC+TGG 0.624747 4.3:+35607886 None:intergenic
ATCCATGAGATTGTGGCAAG+CGG 0.630120 4.3:-35606508 MS.gene056700:CDS
TGATGCCATCCATGAGATTG+TGG 0.630840 4.3:-35606515 MS.gene056700:CDS
AACATTCTTAGGGAAGAAGG+TGG 0.632595 4.3:-35609695 MS.gene056700:CDS
GGAGGATCTAGAGGTTGTTG+CGG 0.641056 4.3:-35607880 MS.gene056700:CDS
CTTTCAAGAAAATCATAGAA+GGG 0.642452 4.3:+35610490 None:intergenic
CCCTCCTTACCCAAATTGAG+AGG 0.643975 4.3:-35611846 MS.gene056700:CDS
GCCTTAGCAGAACAAATATG+CGG 0.646975 4.3:+35609191 None:intergenic
AAGTGTGTTAAGATAAAGTG+TGG 0.647393 4.3:+35608999 None:intergenic
AATCTTCAATGAACTCACAA+AGG 0.647450 4.3:+35609588 None:intergenic
CTGAGATTGATAAAGATGCG+AGG 0.648808 4.3:-35608966 MS.gene056700:CDS
GGAGCACCCAAACCACCAGT+TGG 0.649439 4.3:+35608722 None:intergenic
ACTGGTTACCAGCTTGACAA+GGG 0.650734 4.3:-35610687 MS.gene056700:CDS
TTGTCGGGTGTATACATAGG+GGG 0.654756 4.3:-35606631 MS.gene056700:CDS
GGTGGCAATGACACATCCAA+TGG 0.659109 4.3:-35610078 MS.gene056700:CDS
GGACCCTGATTCTGAACGAG+TGG 0.660047 4.3:-35607802 MS.gene056700:CDS
TGTCAACCTTGTTCAAGGTG+CGG 0.660820 4.3:+35610314 None:intergenic
CTGGTTACCAGCTTGACAAG+GGG 0.662402 4.3:-35610686 MS.gene056700:CDS
TATGAATCCACAGTGGATGG+GGG 0.670381 4.3:+35608689 None:intergenic
TGTGTGACCTTGAATTAGGT+GGG 0.672239 4.3:+35606662 None:intergenic
ATTCACTTACCTGTCGACAC+AGG 0.673693 4.3:-35609561 MS.gene056700:intron
GGGGTGTGAAGGTACTTGTG+CGG 0.674790 4.3:-35606612 MS.gene056700:CDS
AGATTACATATTGAAAGTGG+GGG 0.675495 4.3:-35607856 MS.gene056700:CDS
TGAAGATGAATACCAGCTGG+AGG 0.678607 4.3:-35607898 MS.gene056700:CDS
CTTAGCAGAACAAATATGCG+GGG 0.682439 4.3:+35609193 None:intergenic
TCAGGGAGAGACATTTACAA+AGG 0.683582 4.3:-35612339 MS.gene056700:intron
TATACCGAATATATTTGCTG+GGG 0.697705 4.3:+35609412 None:intergenic
CTGGTCTCCAGATTGACGAG+CGG 0.703175 4.3:+35608916 None:intergenic
ATTGTCGGGTGTATACATAG+GGG 0.715775 4.3:-35606632 MS.gene056700:CDS
CCTTTCATATGAATCCACAG+TGG 0.729978 4.3:+35608682 None:intergenic
TCACTACTTGCAGGGCACAG+AGG 0.740479 4.3:-35606689 MS.gene056700:intron
TTATAACCTCGTCTGCAGAG+GGG 0.747009 4.3:+35612092 None:intergenic
TCATAAGGAAGAGATCTTAG+GGG 0.753553 4.3:+35608236 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.3 gene 35606504 35613416 35606504 ID=MS.gene056700
chr4.3 mRNA 35606504 35613416 35606504 ID=MS.gene056700.t1;Parent=MS.gene056700
chr4.3 exon 35613371 35613416 35613371 ID=MS.gene056700.t1.exon1;Parent=MS.gene056700.t1
chr4.3 CDS 35613371 35613416 35613371 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35612645 35612742 35612645 ID=MS.gene056700.t1.exon2;Parent=MS.gene056700.t1
chr4.3 CDS 35612645 35612742 35612645 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35612340 35612390 35612340 ID=MS.gene056700.t1.exon3;Parent=MS.gene056700.t1
chr4.3 CDS 35612340 35612390 35612340 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35612099 35612212 35612099 ID=MS.gene056700.t1.exon4;Parent=MS.gene056700.t1
chr4.3 CDS 35612099 35612212 35612099 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35611768 35611968 35611768 ID=MS.gene056700.t1.exon5;Parent=MS.gene056700.t1
chr4.3 CDS 35611768 35611968 35611768 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35611578 35611679 35611578 ID=MS.gene056700.t1.exon6;Parent=MS.gene056700.t1
chr4.3 CDS 35611578 35611679 35611578 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35610634 35610741 35610634 ID=MS.gene056700.t1.exon7;Parent=MS.gene056700.t1
chr4.3 CDS 35610634 35610741 35610634 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35610321 35610554 35610321 ID=MS.gene056700.t1.exon8;Parent=MS.gene056700.t1
chr4.3 CDS 35610321 35610554 35610321 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35609849 35610099 35609849 ID=MS.gene056700.t1.exon9;Parent=MS.gene056700.t1
chr4.3 CDS 35609849 35610099 35609849 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35609562 35609733 35609562 ID=MS.gene056700.t1.exon10;Parent=MS.gene056700.t1
chr4.3 CDS 35609562 35609733 35609562 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35609320 35609475 35609320 ID=MS.gene056700.t1.exon11;Parent=MS.gene056700.t1
chr4.3 CDS 35609320 35609475 35609320 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35609165 35609215 35609165 ID=MS.gene056700.t1.exon12;Parent=MS.gene056700.t1
chr4.3 CDS 35609165 35609215 35609165 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35608903 35609034 35608903 ID=MS.gene056700.t1.exon13;Parent=MS.gene056700.t1
chr4.3 CDS 35608903 35609034 35608903 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35608634 35608828 35608634 ID=MS.gene056700.t1.exon14;Parent=MS.gene056700.t1
chr4.3 CDS 35608634 35608828 35608634 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35608398 35608529 35608398 ID=MS.gene056700.t1.exon15;Parent=MS.gene056700.t1
chr4.3 CDS 35608398 35608529 35608398 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35608142 35608315 35608142 ID=MS.gene056700.t1.exon16;Parent=MS.gene056700.t1
chr4.3 CDS 35608142 35608315 35608142 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35607719 35607958 35607719 ID=MS.gene056700.t1.exon17;Parent=MS.gene056700.t1
chr4.3 CDS 35607719 35607958 35607719 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
chr4.3 exon 35606504 35606698 35606504 ID=MS.gene056700.t1.exon18;Parent=MS.gene056700.t1
chr4.3 CDS 35606504 35606698 35606504 ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1
Gene Sequence

>MS.gene056700

ATGGCTCAGCCGCTTATCAAGAAAGACGATGACCGTGACGACGAAGGTAATTCATTCTTCCCACTTTTTCCGTTTTTCTTTTTCGCGCAATTCGATCTACTCTCTTCCGTGCTCATTTTCTAGATCCAATGCTTAATTTCTGTTTCTATTGAGGAATGCGGTACGGTTCGCGTAGATCACGATGCTTGAATTGAATTGGATTCGATTAGTTCGTTTTTTAATTGTTGTCGGTTTGTAGAAATTTGAGTTGATCTAATCGATAATCATGTAATTTCAAATGCAGTTTATTATTAATAACGTGCAATTGCTTGTGTGAATTTGAACAAGTTGATTAATAGCTAATTTAGATATTTTATTGCTTCTTTTCACACTTTGGTCACGATTAGTGCGTTTTTTGAATTGTTTTATATGATTTTGGTTTGTAGTGATTTGTAGAAATTAGAAAATTGTTTTGATCTAGCTATGTAATTTGAAATGCAGTTCGTAAGGTGCAATTGCTTGTTTGAATTTCAACAAGTTTATGGTGACTAGTTAGTTGGTTAATAGAATATTTAGATATTTTATAGCTTCTTTTCAAACTTCGGTTAGGACTCAAGCTGGTTTATTGTGATGAGTCCTATATACTTATAATGTCCGTATTTGTGGATTAATTCTTTTTATTTTCTGTTTAACAGATAATTATTCCCCGTTTTTGGGAATTGAAAAGGGGGCTGTTCTTCAAGAGGCCCGGGTTTTTAATGATCCACAACTAGATGCTAGGAGATGTTCACAGGTTCTTATATTTATTTATTTGTTTATTTATCTATGGTTTCGCTGTCTTAGCCAATGAAGCACTGACACAGCACAACACAGTCGACACTGGTACTAATTTGAAAAAGTGAATTAATTGAACGTAATCAATCACATGTATCAGATACCAACATGAGTTGTCGGACTCCGGACACACCATCAATCAGAAGTGTCTGTGCTACATAGGTCTTTAACCAGTAGTTTGATTTTTTACTGTGCGTGTTTAACCCTTTTCAGGTTATCACAAAACTGTTATACCTACTGAATCAGGGAGAGACATTTACAAAGGTCAATATATTTTCCTTTTATTTCTTAATTAAAGATTGTATCTTACTTATAGGATGTACATTGCAAGATTATATTAGAGTTAATATGAATCCTTTTTCAGTAATTCTTTTCTTGCCTCATTTTATAGGTTGAAGCCACAGAAGTTTTCTTTTCTGTTACCAAGCTTTTCCAATCTCGAGATCTTGGGTTAAGGAGAATGGTGTACCTGATAATAAAGGAACTTTCCCCCTCTGCAGACGAGGTTATAAATTCTCATGCAATTTATGTTATGATAGAAACTGATCTATCATGTTACTTGTCAGATTCACTTAAACGGCTTCGTTTTACTAAATTAAATTCTGACTGTTCCATCTCTTTTATTTTTTTAAAAGGTTATTATCGTCACGAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTTTGTCGGATCACGGATGGAACCCTCCTTACCCAAATTGAGAGGTATTTGAAACAAGCAATTGTAGACAAGAATCCAGTTGTTGCAAGTGCGGCCCTAGTTAGTGGTATTCATCTACTCCAGGTATTACTATTAATATATATTTGTAATCTTTCTATGATCTGTATATTTCATCTACATCAGCGGCTTATTGTATATCCCCCACTTTCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTACAATCAAGAGCAGCTCTTGTACAATTTCACGCGCTGGCTTTGCTACATCAGGTATGCTGCGTGAATGTTTGATGATGAAAGCCTTCTTTGTGTATTAAAATATATTCTATTGAATAACCTAAAACTCTGTCGTCAGTGATGCAATGTAATTCATCAGTTCCTGGGATATGTATCAAGATCAATTTCTTGTACGTTCAATTTTTTTGATTTAGCACGGTTGAAGTTCATTGAATATTTGACATGAGCTGGTGTTTTATTATTTTCCTTTTAAAACCTGTTAGATATTCAGAATTACATAATATTGAAGCTTTATGATCAAGTGGTTTAGACTTTAAAGTTAAATCCCTGTCACCTCCATTTTCCAAATAAAAATTTAAATTCGGTACAGGGGGATGTTAAATATGAAGACCTTCAGTGGACAGCTTAAGCTTTTTTAATAATTGGTTCATGTCAAAATTCAAATAATTTTTCTCTCACTTTTCTATAAGCTTCTCATGGAAATGAATTTACCACAATAAAAGAAAGCAAAACTTCTTGTTGATATTTGATTTTTTGGTTTCTAGTCCATCTTATGACATTATGCCATCTACTATTCTACTGTGAATAAAAGTTTTAGCACACTCCTATTCATACTCTTATTTTAGCTTCAACTACAGCTGCAATTGATAACTGGCTGCATCATATATCACTGTGAATAGTTTTAAAGACTGATTATCATGAACATTGCTATGTTCTCAACTTCGGCAAAGTTTGTATATTATATCACTCTTAAACCTCTCCTATCAATGACACATTGATATACCGTCCAAGAATCCTTCTTTATTGGCATACCAAACAAATAAGTTACATTCATATTTGTTGAAACATGGTGAATTGCTACATTGCAGATACGGCAGAATGATCGACTAGCAGTTAGCAAACTGGTTACCAGCTTGACAAGGGGAAGTGTTCGCTCACCTTTGGCCCAATGTCTCTTGATCCGTTACACAAGTCAGGTGTGTTCTCCTTTTCTTATATAGTTGTCCCTGGGAGGCTATTCATTTGAATGATCTTTATGTACCATAATATCTGCAGGTTATTCGCGAGTCAGGAAATATTACACAATCAGGGGAGCGACCCTTCTATGATTTTCTTGAAAGTTGCCTTCGTCACAAGTCCGAAATGGTGATTTTTGAAGCTGCTAAGGCAATTACAGACCTTAATGGTGTAACTAGCCGAGAATTAACTCCAGCAATCACTGTTCTTCAGCTCTTCCTAAGTTCTTCCAAGCCAGTATTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTTGACATTCTCTAATCACATAAATTTAATAGAATTTGAGAAAGGATATATGTTGATTCTCTCCCTTCTGGAGGCGCATTTTGCTTTTCTGTCTGTTATGATGTTGGGAAAGTTGATGAAAAAACATTATCGTATTGTAGCTAATATTAAAAGATTTTTCACGGTCTAACTTGTTGATTGTTTTTATTAATAATTTATGAGTGTGGTTTTGAACTTTGCAGGTGGCAATGACACATCCAATGGCCGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCTATTACTACTCTTTTGAAGACAGGAAATGAATCAAGCGTGGATCGCCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGACGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCTTGAAGTTTCCTTTAAAATATAGATCTCTGTGAGTATATGTGCCATTCTATATGTTTCTTTCAGCCAGATGTTACATCTTTCATTTGAATATTTTCCCTGATAATGGTCTAAATTACTGGTTTCTATTATGTTATTATTTTCAGGATGAATTTCCTGAGTAACATTCTTAGGGAAGAAGGTGGTTTCGATTACAAGAAAGCAATTGTCGATTCAATAGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTACTTCACCTTTGTGAGTTCATTGAAGATTGTGAATTCACTTACCTGTCGACACAGGTGATAAATTTTGGTTGTGCTTTGTAGTTTACTTTGCGTGATATTGGAATTTTACCTCTTGTTAATTTTTTCCCCTTGTACCTTAGATACTCCACTTCCTTGGCATTGAAGGACCAAAAACATTGGACCCCAGCAAATATATTCGGTATATTTATAACAGAGTACATCTCGAGAATGCAACTGTTAGGGCCAGTGCTGTGAGCACACTAGCCAAATTTGGTGCTTCTGTTGATGGATTAAAGGTGCTGTTGCCTTTATTTATTAATTATTTTCTCTAGAATTTTTGTTTATTTAGGGTGATATTTGTTATTAACTTAATTAAAAATCTCTTAATTACTCTTTTCAGCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGACGAGGTCAATTTCTGTCATTTCTTACATTGCATTTCTATAATTTATGTGGTTCCTACGATTTTCAAGGAAGTTTATCAAATTATTATTTGCTTTGATTTATATTTTGATGGTTATGATTTTGATTTCTTTGCAGGTTCGTGATAGAGCCACACTTTATCTTAACACACTTGGAGGTGATACTGAGATTGATAAAGATGCGAGGGACTTCCTCTTCGGCTCACTTGATATCCCGCTCGTCAATCTGGAGACCAGTTTGAAAAAATACGTAAGTTCTCTATATTGTTATTTCTTTTCATTAGTTACTTTAGGACATATCTCATGTTTCCTCTTTGACTGCAGGAGCCTTCGGAAGAGGCTTTTGACATTAATTTGGTGCCCAAGGAGTCTCAGCCTCTTGCCGAGAAGAAAGCCCCTGGTAAAAAGCCAACTGGTGGTTTGGGTGCTCCTCCTAGTGGGCCCCCATCCACTGTGGATTCATATGAAAGGCAACTTCTGTCAATTCCTGAGTTTGCAAACTTTGGGAAGCTTTTTAAGGTTCTTTCTCTAAATCTTACAAAAATGATATATATCCGTATTATTCTTTCTATATCCGATCTAATCATATGTATTCTGATATTATATATTATATTTCTTACCAGTCCTCAGCACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATACACATGTTGTGTTTCAGTACAACTGCACAAACACAATACCCGAACAACTATTGGAAGATGTAATGACTAATATAGATGATGTACAATTTCATACTATTATGCAACTTCAGGCCATCTGTGTAATATTTTTCCCTATTCCAGGTTATTGTAGTTGTGGATGCTTCAGAAGCAGAAGAATTTTCTCAGGTGATCTCCACACCCCTAAGATCTCTTCCTTATGATTCACCTGGGCAGACTTTTGTGGCGTTTGAGAAGCCTGAGGGATTGCCAACATCTGGAAAGTTTTCTAACATTCTGAGATTTATTGTTAAAGAGGTACTTATTCCCTTTGTTTGTGGTTTTCCTGTCCAAGATCTCCATTATATTATGTATGCGTGTGTTTAAATATCAATCATGAAGCTTATTGTGTTTTTTTCATCTTGAAATTTGTGCAAAACTAGACCTATAATAGTTTTTGTGGAAAGTTGTTCGTTACTTCATAACTTGCATATTGACCAGGTTGACCCAACCTCTGGCGAGGCTGAAGATGATGGCGTTGAAGATGAATACCAGCTGGAGGATCTAGAGGTTGTTGCGGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGCATGGACCCTGATTCTGAACGAGTGGATGAATACGGTCTTGGCCCAAGGGAAGGCTTGTCCGAAGCTGTAAATACTGTCATCACTCTTCTTGGCATGCAACCTTGTGAGGTAAGCCAATGATGTCAGTTGTGGCTTCTTAAATGCTTGTTGTTATGAGACCCATTTTATTAAACTGATCATGAGTGTTTTGCACTATTATTACTGCAACTGCAACATGAGGTGATGTCCTCCCAATTAGATTCTTTCCAGAAAACTAAAAAAATGTTACTATCAGGATTCATTTTCCATACACTGATTTCGTATTCATTTTCCATGCCTTATTGGAGAGCAAAACCCAAACGTTGGCGTTCACTTTCTCATACATCAATTTTAGGTTGAACATTATTCTGAGGTGTATATAAATACTTCAATGCTTGTAGCCAGTCCGCTTAGTTCCTTTTAAAATTTTGAAGTTGATCTTCGACACATTGCTAAACTCAAGCCACAAGGACGCCCATGAGTAGCATTTAAACTTTAAAGTGCTGTTGTTTGGACAGAATGCTATTCTGTGAACATGTGCTTGCACACAGGTTCATTGACAGATAACATGAAGTAGAAGAGATTCTCTGGTGCTTCAGGAGTAAGACATTTCTTTTCCCATGGCTCAAAGATCAATCCCAATTGTTGAGAGTTTTGATATACCTACATAAAGAGATGCAAATACATTTAGGCTATAGAAAATGTTTGCTTTAAGTCAGTAGTTCCTTTTAATGATTTGGCATTAGAGCTTTTTGACATTTTGTCAAATCCCTGCCACAACGAGGTTATAGATGCAAGTAAAAGCCTGTGTAAGCATAGACCATTGAGAACCCGATTTAAGAGTTTCTTAGGTTCTCGTGAGAGTAATGGATTTCTCTTTCACTTCATGGCCACTCGAGATAAAGTATTGGCTGATGTCATTGCTAACATCATCTGGAACCTGGAATATTAGACATTTTGTTCTCTAACTCCATGCTAGTACCACCAAAGAACTTTTGAAAGAAAGGAGTAGAGCATCTTATATCGATCAATGCATGTTCATTAGTAATACAACCGTATCTTCTAGGAAGGCAATATCTTTCTCATTATTTTATTGTTCACTACTTGCAGGGCACAGAGGTCGTCCCACCTAATTCAAGGTCACACACATGCTTATTGTCGGGTGTATACATAGGGGGTGTGAAGGTACTTGTGCGGCTGTCTTTTGGACTTGATGGTGCAAAGGATGTTGCAATGAAACTGGCTGTCAGATCTGATGATGTAACTGTCAGTGATGCCATCCATGAGATTGTGGCAAGCGGTTAG

Protein sequence

>MS.gene056700.t1

MAQPLIKKDDDRDDEDNYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESGNITQSGERPFYDFLESCLRHKSEMVIFEAAKAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTLDPSKYIRYIYNRVHLENATVRASAVSTLAKFGASVDGLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDTEIDKDARDFLFGSLDIPLVNLETSLKKYEPSEEAFDINLVPKESQPLAEKKAPGKKPTGGLGAPPSGPPSTVDSYERQLLSIPEFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDTHVVFQYNCTNTIPEQLLEDVIVVVDASEAEEFSQVISTPLRSLPYDSPGQTFVAFEKPEGLPTSGKFSNILRFIVKEVDPTSGEAEDDGVEDEYQLEDLEVVAADYILKVGVSNFRNAWESMDPDSERVDEYGLGPREGLSEAVNTVITLLGMQPCEGTEVVPPNSRSHTCLLSGVYIGGVKVLVRLSFGLDGAKDVAMKLAVRSDDVTVSDAIHEIVASG