Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056700.t1 | XP_003606893.1 | 99 | 885 | 7 | 1 | 1 | 883 | 1 | 885 | 0.00E+00 | 1689.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056700.t1 | Q0WW26 | 85.1 | 887 | 127 | 3 | 1 | 883 | 1 | 886 | 0.0e+00 | 1468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056700.t1 | G7JG50 | 99.0 | 885 | 7 | 1 | 1 | 883 | 1 | 885 | 0.0e+00 | 1689.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056570 | MS.gene056700 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene056700 | MS.gene062886 | 0.862768 | 4.01E-64 | -1.69E-46 |
| MS.gene056700 | MS.gene062887 | 0.868392 | 6.76E-66 | -1.69E-46 |
| MS.gene056700 | MS.gene062888 | 0.868362 | 6.91E-66 | -1.69E-46 |
| MS.gene056700 | MS.gene06325 | 0.81777 | 2.77E-52 | -1.69E-46 |
| MS.gene056700 | MS.gene064893 | 0.841928 | 3.53E-58 | -1.69E-46 |
| MS.gene056700 | MS.gene066107 | 0.813467 | 2.52E-51 | -1.69E-46 |
| MS.gene056700 | MS.gene25815 | 0.820265 | 7.51E-53 | -1.69E-46 |
| MS.gene056700 | MS.gene26731 | 0.817672 | 2.92E-52 | -1.69E-46 |
| MS.gene056700 | MS.gene28115 | 0.81058 | 1.07E-50 | -1.69E-46 |
| MS.gene056700 | MS.gene29353 | 0.812185 | 4.82E-51 | -1.69E-46 |
| MS.gene056700 | MS.gene30247 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene056700 | MS.gene33526 | 0.802761 | 4.81E-49 | -1.69E-46 |
| MS.gene056700 | MS.gene34086 | 0.813419 | 2.58E-51 | -1.69E-46 |
| MS.gene056700 | MS.gene42154 | 0.819172 | 1.34E-52 | -1.69E-46 |
| MS.gene056700 | MS.gene44922 | 0.805709 | 1.17E-49 | -1.69E-46 |
| MS.gene056700 | MS.gene47890 | 0.88036 | 5.85E-70 | -1.69E-46 |
| MS.gene056700 | MS.gene50077 | 0.971703 | 1.39E-133 | -1.69E-46 |
| MS.gene056700 | MS.gene50735 | 0.827643 | 1.40E-54 | -1.69E-46 |
| MS.gene056700 | MS.gene55148 | 0.800235 | 1.59E-48 | -1.69E-46 |
| MS.gene056700 | MS.gene55149 | 0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene056700 | MS.gene55846 | 0.809743 | 1.63E-50 | -1.69E-46 |
| MS.gene056700 | MS.gene70350 | 0.840686 | 7.49E-58 | -1.69E-46 |
| MS.gene056700 | MS.gene70796 | 0.830511 | 2.82E-55 | -1.69E-46 |
| MS.gene056700 | MS.gene82544 | 0.833281 | 5.84E-56 | -1.69E-46 |
| MS.gene056700 | MS.gene87319 | 0.812369 | 4.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011220 | MS.gene056700 | PPI |
| MS.gene07800 | MS.gene056700 | PPI |
| MS.gene056700 | MS.gene74983 | PPI |
| MS.gene021666 | MS.gene056700 | PPI |
| MS.gene056700 | MS.gene37394 | PPI |
| MS.gene056700 | MS.gene005784 | PPI |
| MS.gene74608 | MS.gene056700 | PPI |
| MS.gene74984 | MS.gene056700 | PPI |
| MS.gene30333 | MS.gene056700 | PPI |
| MS.gene003673 | MS.gene056700 | PPI |
| MS.gene032230 | MS.gene056700 | PPI |
| MS.gene056700 | MS.gene68093 | PPI |
| MS.gene056700 | MS.gene63417 | PPI |
| MS.gene056700 | MS.gene003223 | PPI |
| MS.gene029334 | MS.gene056700 | PPI |
| MS.gene74768 | MS.gene056700 | PPI |
| MS.gene062888 | MS.gene056700 | PPI |
| MS.gene21432 | MS.gene056700 | PPI |
| MS.gene056700 | MS.gene003672 | PPI |
| MS.gene23325 | MS.gene056700 | PPI |
| MS.gene065067 | MS.gene056700 | PPI |
| MS.gene02023 | MS.gene056700 | PPI |
| MS.gene76243 | MS.gene056700 | PPI |
| MS.gene029335 | MS.gene056700 | PPI |
| MS.gene056700 | MS.gene50735 | PPI |
| MS.gene065068 | MS.gene056700 | PPI |
| MS.gene043279 | MS.gene056700 | PPI |
| MS.gene76242 | MS.gene056700 | PPI |
| MS.gene79635 | MS.gene056700 | PPI |
| MS.gene02789 | MS.gene056700 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056700.t1 | MTR_4g069920 | 98.983 | 885 | 7 | 1 | 1 | 883 | 1 | 885 | 0.0 | 1787 |
| MS.gene056700.t1 | MTR_3g116480 | 89.527 | 888 | 87 | 3 | 1 | 883 | 1 | 887 | 0.0 | 1635 |
| MS.gene056700.t1 | MTR_4g076210 | 19.969 | 636 | 440 | 17 | 21 | 611 | 9 | 620 | 1.83e-15 | 81.6 |
| MS.gene056700.t1 | MTR_4g008250 | 22.816 | 412 | 267 | 13 | 48 | 433 | 36 | 422 | 1.22e-11 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056700.t1 | AT4G34450 | 85.118 | 887 | 127 | 3 | 1 | 883 | 1 | 886 | 0.0 | 1558 |
| MS.gene056700.t1 | AT2G16200 | 63.768 | 69 | 25 | 0 | 815 | 883 | 1 | 69 | 1.93e-24 | 97.8 |
| MS.gene056700.t1 | AT2G16200 | 63.077 | 65 | 24 | 0 | 819 | 883 | 19 | 83 | 4.44e-22 | 91.7 |
| MS.gene056700.t1 | AT4G23460 | 19.713 | 558 | 393 | 16 | 21 | 549 | 9 | 540 | 9.38e-14 | 76.3 |
| MS.gene056700.t1 | AT4G11380 | 20.188 | 639 | 440 | 19 | 21 | 613 | 9 | 623 | 1.27e-12 | 72.4 |
| MS.gene056700.t1 | AT4G11380 | 20.323 | 620 | 424 | 19 | 40 | 613 | 50 | 645 | 1.73e-12 | 72.0 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCAAATACCTCTCAATT+TGG | 0.170952 | 4.3:+35611836 | None:intergenic |
| ATTTCCTGAGTAACATTCTT+AGG | 0.185985 | 4.3:-35609706 | MS.gene056700:CDS |
| GTACTTGTGCGGCTGTCTTT+TGG | 0.253038 | 4.3:-35606601 | MS.gene056700:CDS |
| TGCTTCTGTTGATGGATTAA+AGG | 0.267375 | 4.3:-35609319 | MS.gene056700:intron |
| ATCAACAGAAGCACCAAATT+TGG | 0.272603 | 4.3:+35609329 | None:intergenic |
| AATCATAAGGAAGAGATCTT+AGG | 0.276012 | 4.3:+35608234 | None:intergenic |
| GGGAAAGTTCCTTTATTATC+AGG | 0.294554 | 4.3:+35612113 | None:intergenic |
| CTCGGCTAGTTACACCATTA+AGG | 0.316336 | 4.3:+35610410 | None:intergenic |
| CACTAACTGCAACATTGATA+TGG | 0.316771 | 4.3:-35610051 | MS.gene056700:CDS |
| CACAATACCCGAACAACTAT+TGG | 0.321464 | 4.3:-35608403 | MS.gene056700:CDS |
| TCATCCACTCGTTCAGAATC+AGG | 0.322426 | 4.3:+35607798 | None:intergenic |
| TTTCAAATACCTCTCAATTT+GGG | 0.330735 | 4.3:+35611837 | None:intergenic |
| ATTCCTGAGTTTGCAAACTT+TGG | 0.335169 | 4.3:-35608647 | MS.gene056700:CDS |
| GTGTGGCAATGCTTCTGTTC+TGG | 0.335873 | 4.3:+35610012 | None:intergenic |
| AATACTGTCATCACTCTTCT+TGG | 0.336080 | 4.3:-35607735 | MS.gene056700:CDS |
| TCAGGAAATATTACACAATC+AGG | 0.339131 | 4.3:-35610520 | MS.gene056700:CDS |
| ACATCTTCCAATAGTTGTTC+GGG | 0.350910 | 4.3:+35608396 | None:intergenic |
| TACATCTTCCAATAGTTGTT+CGG | 0.354992 | 4.3:+35608395 | None:intergenic |
| CTCCACTTCCTTGGCATTGA+AGG | 0.364156 | 4.3:-35609450 | MS.gene056700:CDS |
| ACTGTTATACCTACTGAATC+AGG | 0.365100 | 4.3:-35612357 | MS.gene056700:CDS |
| ATGCCATTCGTGTGCTTTGT+CGG | 0.366102 | 4.3:-35611882 | MS.gene056700:CDS |
| AAATTTGGTGCTTCTGTTGA+TGG | 0.368371 | 4.3:-35609327 | MS.gene056700:CDS |
| TTCCTGAGTTTGCAAACTTT+GGG | 0.370603 | 4.3:-35608646 | MS.gene056700:CDS |
| AAGGTGGAGCAATGAGGTTC+AGG | 0.374504 | 4.3:-35611637 | MS.gene056700:CDS |
| AAGGCAATTACAGACCTTAA+TGG | 0.375353 | 4.3:-35610424 | MS.gene056700:CDS |
| TTTACCAGGGGCTTTCTTCT+CGG | 0.376153 | 4.3:+35608748 | None:intergenic |
| CAAATCCTGAGATTGTAAAA+AGG | 0.381855 | 4.3:-35611656 | MS.gene056700:CDS |
| AATATACCGAATATATTTGC+TGG | 0.382125 | 4.3:+35609410 | None:intergenic |
| GTGAGCACACTAGCCAAATT+TGG | 0.386077 | 4.3:-35609342 | MS.gene056700:CDS |
| TGATATCCCGCTCGTCAATC+TGG | 0.391883 | 4.3:-35608923 | MS.gene056700:CDS |
| CCAGATGTTGGCAATCCCTC+AGG | 0.396127 | 4.3:+35608179 | None:intergenic |
| AGGGCCGCACTTGCAACAAC+TGG | 0.399353 | 4.3:+35611793 | None:intergenic |
| AACCCACTTTCCTTAGCATC+AGG | 0.400667 | 4.3:+35609617 | None:intergenic |
| GGCAAGAGGCTGAGACTCCT+TGG | 0.401450 | 4.3:+35608769 | None:intergenic |
| CGCGCTGGCTTTGCTACATC+AGG | 0.401512 | 4.3:-35611577 | MS.gene056700:intron |
| ACTTTCAAGAAAATCATAGA+AGG | 0.405493 | 4.3:+35610489 | None:intergenic |
| AGCTGAAGAACAGTGATTGC+TGG | 0.407442 | 4.3:+35610379 | None:intergenic |
| ATCTCGAGAATGCAACTGTT+AGG | 0.414312 | 4.3:-35609374 | MS.gene056700:CDS |
| CCTGAGGGATTGCCAACATC+TGG | 0.415471 | 4.3:-35608179 | MS.gene056700:CDS |
| ATAGTAAGACTGATATGTAT+AGG | 0.417992 | 4.3:-35611909 | MS.gene056700:CDS |
| TCTGAGATTTATTGTTAAAG+AGG | 0.421358 | 4.3:-35608141 | MS.gene056700:intron |
| GGGAAGTGTTCGCTCACCTT+TGG | 0.422783 | 4.3:-35610666 | MS.gene056700:CDS |
| GCTTCGGACAAGCCTTCCCT+TGG | 0.423385 | 4.3:+35607762 | None:intergenic |
| TTAGAAAACTTTCCAGATGT+TGG | 0.424560 | 4.3:+35608167 | None:intergenic |
| TTAACCCAAGATCTCGAGAT+TGG | 0.432181 | 4.3:+35612149 | None:intergenic |
| AATGGTGTACCTGATAATAA+AGG | 0.432582 | 4.3:-35612122 | MS.gene056700:CDS |
| ATCATAAGGAAGAGATCTTA+GGG | 0.434291 | 4.3:+35608235 | None:intergenic |
| GAGAATGTCAACCTTGTTCA+AGG | 0.437546 | 4.3:+35610309 | None:intergenic |
| CTGCAGGTTATTCGCGAGTC+AGG | 0.437953 | 4.3:-35610538 | MS.gene056700:intron |
| TCTTTGACTGCAGGAGCCTT+CGG | 0.438517 | 4.3:-35608819 | MS.gene056700:intron |
| CTTCAGCCTCGCCAGAGGTT+GGG | 0.441129 | 4.3:+35607931 | None:intergenic |
| TAGTAAGACTGATATGTATA+GGG | 0.441624 | 4.3:-35611908 | MS.gene056700:CDS |
| GGCTAGTGTGCTCACAGCAC+TGG | 0.441877 | 4.3:+35609350 | None:intergenic |
| ACAGCAGCAAATCTCAATAC+TGG | 0.445031 | 4.3:+35610337 | None:intergenic |
| GCAAGAGGCTGAGACTCCTT+GGG | 0.448565 | 4.3:+35608770 | None:intergenic |
| GGGCTGTTCTTCAAGAGGCC+CGG | 0.450990 | 4.3:-35612687 | MS.gene056700:CDS |
| TATTGTCGGGTGTATACATA+GGG | 0.451006 | 4.3:-35606633 | MS.gene056700:CDS |
| TCTTCAGCCTCGCCAGAGGT+TGG | 0.451809 | 4.3:+35607930 | None:intergenic |
| ATTCCAGGTTATTGTAGTTG+TGG | 0.452428 | 4.3:-35608300 | MS.gene056700:intron |
| TTCCCAAAGTTTGCAAACTC+AGG | 0.454897 | 4.3:+35608644 | None:intergenic |
| CTTTATCTTAACACACTTGG+AGG | 0.455687 | 4.3:-35608994 | MS.gene056700:CDS |
| CCTTAGATACTCCACTTCCT+TGG | 0.456772 | 4.3:-35609459 | MS.gene056700:intron |
| AATTTGTAATCTGCTTCATA+AGG | 0.458318 | 4.3:+35609940 | None:intergenic |
| GTCCTTCAATGCCAAGGAAG+TGG | 0.461397 | 4.3:+35609448 | None:intergenic |
| TGGACCCCAGCAAATATATT+CGG | 0.466206 | 4.3:-35609416 | MS.gene056700:CDS |
| ACCTCTCAATTTGGGTAAGG+AGG | 0.467875 | 4.3:+35611845 | None:intergenic |
| TTTCCTGAGTAACATTCTTA+GGG | 0.469038 | 4.3:-35609705 | MS.gene056700:CDS |
| GGCTGTTCTTCAAGAGGCCC+GGG | 0.470531 | 4.3:-35612686 | MS.gene056700:CDS |
| CTTCGGACAAGCCTTCCCTT+GGG | 0.471166 | 4.3:+35607763 | None:intergenic |
| CATGTGTGTGACCTTGAATT+AGG | 0.473080 | 4.3:+35606658 | None:intergenic |
| CGAGTGGATGAATACGGTCT+TGG | 0.474887 | 4.3:-35607786 | MS.gene056700:CDS |
| AATCTCGAGATCTTGGGTTA+AGG | 0.475513 | 4.3:-35612147 | MS.gene056700:CDS |
| AAAGGATGTTGCAATGAAAC+TGG | 0.479392 | 4.3:-35606566 | MS.gene056700:CDS |
| GTTTGGGTGCTCCTCCTAGT+GGG | 0.481200 | 4.3:-35608712 | MS.gene056700:CDS |
| ACTGCAGGAGCCTTCGGAAG+AGG | 0.482502 | 4.3:-35608813 | MS.gene056700:intron |
| TCGACTAGCAGTTAGCAAAC+TGG | 0.484708 | 4.3:-35610705 | MS.gene056700:CDS |
| TGATTGCTGGAGTTAATTCT+CGG | 0.485049 | 4.3:+35610392 | None:intergenic |
| AACACTTCCCCTTGTCAAGC+TGG | 0.485369 | 4.3:+35610679 | None:intergenic |
| TCGTGTGCTTTGTCGGATCA+CGG | 0.486313 | 4.3:-35611875 | MS.gene056700:CDS |
| CCTTCGTCACAAGTCCGAAA+TGG | 0.488100 | 4.3:-35610464 | MS.gene056700:CDS |
| CCCGCATATTTGTTCTGCTA+AGG | 0.488720 | 4.3:-35609192 | MS.gene056700:CDS |
| TGACATTAATTTGGTGCCCA+AGG | 0.499560 | 4.3:-35608786 | MS.gene056700:CDS |
| ATCCCTGATGCTAAGGAAAG+TGG | 0.499662 | 4.3:-35609620 | MS.gene056700:CDS |
| TCTGCTTCAGTAAGCTCCAC+AGG | 0.503537 | 4.3:+35608498 | None:intergenic |
| AATACCTCTCAATTTGGGTA+AGG | 0.504377 | 4.3:+35611842 | None:intergenic |
| GATGCGAGGGACTTCCTCTT+CGG | 0.505539 | 4.3:-35608952 | MS.gene056700:CDS |
| ATCTCGAGATTGGAAAAGCT+TGG | 0.506597 | 4.3:+35612159 | None:intergenic |
| CTTGATCCGTTACACAAGTC+AGG | 0.507330 | 4.3:-35610633 | MS.gene056700:intron |
| GACCAGGTTGACCCAACCTC+TGG | 0.507760 | 4.3:-35607942 | MS.gene056700:intron |
| AGGAAGAGATCTTAGGGGTG+TGG | 0.508873 | 4.3:+35608241 | None:intergenic |
| GGCAGATTACATATTGAAAG+TGG | 0.509324 | 4.3:-35607859 | MS.gene056700:CDS |
| GTCACACACATGCTTATTGT+CGG | 0.512785 | 4.3:-35606647 | MS.gene056700:CDS |
| GATGACAGTATTTACAGCTT+CGG | 0.513779 | 4.3:+35607746 | None:intergenic |
| TCATATGAATCCACAGTGGA+TGG | 0.514753 | 4.3:+35608686 | None:intergenic |
| AACCGCTTGCCACAATCTCA+TGG | 0.515317 | 4.3:+35606506 | None:intergenic |
| AGTAACATTCTTAGGGAAGA+AGG | 0.515461 | 4.3:-35609698 | MS.gene056700:CDS |
| ATATGAATCCACAGTGGATG+GGG | 0.517753 | 4.3:+35608688 | None:intergenic |
| GTCTGCCCAGGTGAATCATA+AGG | 0.518091 | 4.3:+35608221 | None:intergenic |
| AGATCTTGGGTTAAGGAGAA+TGG | 0.521392 | 4.3:-35612140 | MS.gene056700:CDS |
| ATATACCGAATATATTTGCT+GGG | 0.521845 | 4.3:+35609411 | None:intergenic |
| TTACCAGTCCTCAGCACCTG+TGG | 0.522599 | 4.3:-35608514 | MS.gene056700:intron |
| TCTCGAGAATGCAACTGTTA+GGG | 0.522696 | 4.3:-35609373 | MS.gene056700:CDS |
| ACACTTTATCTTAACACACT+TGG | 0.523186 | 4.3:-35608997 | MS.gene056700:CDS |
| ATACTGGCTTGGAAGAACTT+AGG | 0.525861 | 4.3:+35610353 | None:intergenic |
| ATGAATTACCTTCGTCGTCA+CGG | 0.525890 | 4.3:+35613362 | None:intergenic |
| GGTTTGGGTGCTCCTCCTAG+TGG | 0.528947 | 4.3:-35608713 | MS.gene056700:CDS |
| AGGTCGTCCCACCTAATTCA+AGG | 0.529115 | 4.3:-35606669 | MS.gene056700:CDS |
| CTTCCCTAAGAATGTTACTC+AGG | 0.529688 | 4.3:+35609702 | None:intergenic |
| CCTTAGCAGAACAAATATGC+GGG | 0.530435 | 4.3:+35609192 | None:intergenic |
| GGGGCTTTCTTCTCGGCAAG+AGG | 0.532512 | 4.3:+35608755 | None:intergenic |
| CATATGAATCCACAGTGGAT+GGG | 0.533554 | 4.3:+35608687 | None:intergenic |
| TAGAGATATCCCTGATGCTA+AGG | 0.533771 | 4.3:-35609627 | MS.gene056700:CDS |
| TACGGTCTTGGCCCAAGGGA+AGG | 0.536329 | 4.3:-35607774 | MS.gene056700:CDS |
| TTGCAGTTAGTGACGGCCAT+TGG | 0.536634 | 4.3:+35610062 | None:intergenic |
| TCTCTTCCTTATGATTCACC+TGG | 0.537388 | 4.3:-35608227 | MS.gene056700:CDS |
| AATTTATCACCTGTGTCGAC+AGG | 0.539284 | 4.3:+35609552 | None:intergenic |
| TGCTGTCCGCACCTTGAACA+AGG | 0.541322 | 4.3:-35610320 | MS.gene056700:intron |
| TGGTCTCCAGATTGACGAGC+GGG | 0.541433 | 4.3:+35608917 | None:intergenic |
| GCAAGTGCGGCCCTAGTTAG+TGG | 0.543102 | 4.3:-35611784 | MS.gene056700:CDS |
| AGCAAATCTCAATACTGGCT+TGG | 0.543208 | 4.3:+35610342 | None:intergenic |
| TCCCTGATGCTAAGGAAAGT+GGG | 0.543834 | 4.3:-35609619 | MS.gene056700:CDS |
| CAGGAAATATTACACAATCA+GGG | 0.544297 | 4.3:-35610519 | MS.gene056700:CDS |
| GTAGATGAATACCACTAACT+AGG | 0.544395 | 4.3:+35611773 | None:intergenic |
| TCTTGGCATGCAACCTTGTG+AGG | 0.544482 | 4.3:-35607718 | MS.gene056700:intron |
| TTATTGTCGGGTGTATACAT+AGG | 0.544529 | 4.3:-35606634 | MS.gene056700:CDS |
| CATCCACTCGTTCAGAATCA+GGG | 0.547058 | 4.3:+35607799 | None:intergenic |
| TCTGGCGAGGCTGAAGATGA+TGG | 0.547600 | 4.3:-35607924 | MS.gene056700:CDS |
| TGTCTAATTTCAGGAATGCA+TGG | 0.550073 | 4.3:-35607833 | MS.gene056700:CDS |
| ATCAAGAGACATTGGGCCAA+AGG | 0.551616 | 4.3:+35610650 | None:intergenic |
| CGTTGAAGATGAATACCAGC+TGG | 0.552341 | 4.3:-35607901 | MS.gene056700:CDS |
| TAGTGGTATTCATCTACTCC+AGG | 0.552999 | 4.3:-35611767 | MS.gene056700:intron |
| CCTCTCAATTTGGGTAAGGA+GGG | 0.553566 | 4.3:+35611846 | None:intergenic |
| TCTGAACGAGTGGATGAATA+CGG | 0.554007 | 4.3:-35607792 | MS.gene056700:CDS |
| TCACACACATGCTTATTGTC+GGG | 0.555717 | 4.3:-35606646 | MS.gene056700:CDS |
| ATGAATACGGTCTTGGCCCA+AGG | 0.555779 | 4.3:-35607779 | MS.gene056700:CDS |
| TCTTGTACAATTTCACGCGC+TGG | 0.557651 | 4.3:-35611592 | MS.gene056700:CDS |
| GCAGATTACATATTGAAAGT+GGG | 0.557921 | 4.3:-35607858 | MS.gene056700:CDS |
| GTGCTTTGTCGGATCACGGA+TGG | 0.561141 | 4.3:-35611871 | MS.gene056700:CDS |
| ATGATCCACAACTAGATGCT+AGG | 0.562098 | 4.3:-35612657 | MS.gene056700:CDS |
| AGATGCTAGGAGATGTTCAC+AGG | 0.562547 | 4.3:-35612644 | MS.gene056700:intron |
| TGTAACGGATCAAGAGACAT+TGG | 0.563004 | 4.3:+35610642 | None:intergenic |
| GTAACGGATCAAGAGACATT+GGG | 0.565503 | 4.3:+35610643 | None:intergenic |
| CAGGAATGCATGGGAAAGCA+TGG | 0.565865 | 4.3:-35607823 | MS.gene056700:CDS |
| AACTGGTTACCAGCTTGACA+AGG | 0.570909 | 4.3:-35610688 | MS.gene056700:CDS |
| TTTATAACCTCGTCTGCAGA+GGG | 0.571108 | 4.3:+35612091 | None:intergenic |
| CGTCACGAGCTCTCTCATGA+AGG | 0.576960 | 4.3:-35611938 | MS.gene056700:CDS |
| TATAACCTCGTCTGCAGAGG+GGG | 0.576990 | 4.3:+35612093 | None:intergenic |
| CATCATTGGCTTACCTCACA+AGG | 0.578882 | 4.3:+35607705 | None:intergenic |
| AACGCCACAAAAGTCTGCCC+AGG | 0.583006 | 4.3:+35608209 | None:intergenic |
| TAGATGAATACCACTAACTA+GGG | 0.583080 | 4.3:+35611774 | None:intergenic |
| GAATCCAGTTGTTGCAAGTG+CGG | 0.583487 | 4.3:-35611797 | MS.gene056700:CDS |
| GTCTAATTTCAGGAATGCAT+GGG | 0.584699 | 4.3:-35607832 | MS.gene056700:CDS |
| AAGAGTAGTAATAGCAAGTG+TGG | 0.586121 | 4.3:+35609995 | None:intergenic |
| TGAATACGGTCTTGGCCCAA+GGG | 0.587422 | 4.3:-35607778 | MS.gene056700:CDS |
| ATCAATGTTGCAGTTAGTGA+CGG | 0.589023 | 4.3:+35610055 | None:intergenic |
| GGATATCAAGTGAGCCGAAG+AGG | 0.589509 | 4.3:+35608938 | None:intergenic |
| TCATCGTCTTTCTTGATAAG+CGG | 0.590697 | 4.3:+35613385 | None:intergenic |
| GTGTGTGACCTTGAATTAGG+TGG | 0.595130 | 4.3:+35606661 | None:intergenic |
| ATTTATAACCTCGTCTGCAG+AGG | 0.595326 | 4.3:+35612090 | None:intergenic |
| CAGATTACATATTGAAAGTG+GGG | 0.600224 | 4.3:-35607857 | MS.gene056700:CDS |
| CATCTCCTAGCATCTAGTTG+TGG | 0.601531 | 4.3:+35612652 | None:intergenic |
| GACGATGACCGTGACGACGA+AGG | 0.602361 | 4.3:-35613370 | MS.gene056700:intron |
| TGAGATTGATAAAGATGCGA+GGG | 0.603374 | 4.3:-35608965 | MS.gene056700:CDS |
| ACCCACTTTCCTTAGCATCA+GGG | 0.604088 | 4.3:+35609618 | None:intergenic |
| TGTGGCGTTTGAGAAGCCTG+AGG | 0.604943 | 4.3:-35608195 | MS.gene056700:CDS |
| ATGTCAAAAGCCTCTTCCGA+AGG | 0.609072 | 4.3:+35608803 | None:intergenic |
| AGTAAGCTCCACAGGTGCTG+AGG | 0.610022 | 4.3:+35608506 | None:intergenic |
| GTGGCGTTTGAGAAGCCTGA+GGG | 0.610662 | 4.3:-35608194 | MS.gene056700:CDS |
| CCACTGTGGATTCATATGAA+AGG | 0.612693 | 4.3:-35608682 | MS.gene056700:CDS |
| AACACACCTGACTTGTGTAA+CGG | 0.614135 | 4.3:+35610627 | None:intergenic |
| ATCATCTTCAGCCTCGCCAG+AGG | 0.614172 | 4.3:+35607926 | None:intergenic |
| ATGTCTCTCCCTGATTCAGT+AGG | 0.615879 | 4.3:+35612348 | None:intergenic |
| GATCCGACAAAGCACACGAA+TGG | 0.616477 | 4.3:+35611879 | None:intergenic |
| CTGTTATACCTACTGAATCA+GGG | 0.617217 | 4.3:-35612356 | MS.gene056700:CDS |
| CTCTTCCTTATGATTCACCT+GGG | 0.617576 | 4.3:-35608226 | MS.gene056700:CDS |
| GCTTGCCACAATCTCATGGA+TGG | 0.618369 | 4.3:+35606510 | None:intergenic |
| CCATTTCGGACTTGTGACGA+AGG | 0.619323 | 4.3:+35610464 | None:intergenic |
| CTTGCCGAGAAGAAAGCCCC+TGG | 0.619544 | 4.3:-35608752 | MS.gene056700:CDS |
| ATACCAGCTGGAGGATCTAG+AGG | 0.621534 | 4.3:-35607889 | MS.gene056700:CDS |
| GACAGGAAATGAATCAAGCG+TGG | 0.621967 | 4.3:-35609967 | MS.gene056700:CDS |
| AACAGAAAAGAAAACTTCTG+TGG | 0.622899 | 4.3:+35612183 | None:intergenic |
| GGTTGACCCAACCTCTGGCG+AGG | 0.622975 | 4.3:-35607937 | MS.gene056700:CDS |
| AGGAAATATTACACAATCAG+GGG | 0.624728 | 4.3:-35610518 | MS.gene056700:CDS |
| CAACCTCTAGATCCTCCAGC+TGG | 0.624747 | 4.3:+35607886 | None:intergenic |
| ATCCATGAGATTGTGGCAAG+CGG | 0.630120 | 4.3:-35606508 | MS.gene056700:CDS |
| TGATGCCATCCATGAGATTG+TGG | 0.630840 | 4.3:-35606515 | MS.gene056700:CDS |
| AACATTCTTAGGGAAGAAGG+TGG | 0.632595 | 4.3:-35609695 | MS.gene056700:CDS |
| GGAGGATCTAGAGGTTGTTG+CGG | 0.641056 | 4.3:-35607880 | MS.gene056700:CDS |
| CTTTCAAGAAAATCATAGAA+GGG | 0.642452 | 4.3:+35610490 | None:intergenic |
| CCCTCCTTACCCAAATTGAG+AGG | 0.643975 | 4.3:-35611846 | MS.gene056700:CDS |
| GCCTTAGCAGAACAAATATG+CGG | 0.646975 | 4.3:+35609191 | None:intergenic |
| AAGTGTGTTAAGATAAAGTG+TGG | 0.647393 | 4.3:+35608999 | None:intergenic |
| AATCTTCAATGAACTCACAA+AGG | 0.647450 | 4.3:+35609588 | None:intergenic |
| CTGAGATTGATAAAGATGCG+AGG | 0.648808 | 4.3:-35608966 | MS.gene056700:CDS |
| GGAGCACCCAAACCACCAGT+TGG | 0.649439 | 4.3:+35608722 | None:intergenic |
| ACTGGTTACCAGCTTGACAA+GGG | 0.650734 | 4.3:-35610687 | MS.gene056700:CDS |
| TTGTCGGGTGTATACATAGG+GGG | 0.654756 | 4.3:-35606631 | MS.gene056700:CDS |
| GGTGGCAATGACACATCCAA+TGG | 0.659109 | 4.3:-35610078 | MS.gene056700:CDS |
| GGACCCTGATTCTGAACGAG+TGG | 0.660047 | 4.3:-35607802 | MS.gene056700:CDS |
| TGTCAACCTTGTTCAAGGTG+CGG | 0.660820 | 4.3:+35610314 | None:intergenic |
| CTGGTTACCAGCTTGACAAG+GGG | 0.662402 | 4.3:-35610686 | MS.gene056700:CDS |
| TATGAATCCACAGTGGATGG+GGG | 0.670381 | 4.3:+35608689 | None:intergenic |
| TGTGTGACCTTGAATTAGGT+GGG | 0.672239 | 4.3:+35606662 | None:intergenic |
| ATTCACTTACCTGTCGACAC+AGG | 0.673693 | 4.3:-35609561 | MS.gene056700:intron |
| GGGGTGTGAAGGTACTTGTG+CGG | 0.674790 | 4.3:-35606612 | MS.gene056700:CDS |
| AGATTACATATTGAAAGTGG+GGG | 0.675495 | 4.3:-35607856 | MS.gene056700:CDS |
| TGAAGATGAATACCAGCTGG+AGG | 0.678607 | 4.3:-35607898 | MS.gene056700:CDS |
| CTTAGCAGAACAAATATGCG+GGG | 0.682439 | 4.3:+35609193 | None:intergenic |
| TCAGGGAGAGACATTTACAA+AGG | 0.683582 | 4.3:-35612339 | MS.gene056700:intron |
| TATACCGAATATATTTGCTG+GGG | 0.697705 | 4.3:+35609412 | None:intergenic |
| CTGGTCTCCAGATTGACGAG+CGG | 0.703175 | 4.3:+35608916 | None:intergenic |
| ATTGTCGGGTGTATACATAG+GGG | 0.715775 | 4.3:-35606632 | MS.gene056700:CDS |
| CCTTTCATATGAATCCACAG+TGG | 0.729978 | 4.3:+35608682 | None:intergenic |
| TCACTACTTGCAGGGCACAG+AGG | 0.740479 | 4.3:-35606689 | MS.gene056700:intron |
| TTATAACCTCGTCTGCAGAG+GGG | 0.747009 | 4.3:+35612092 | None:intergenic |
| TCATAAGGAAGAGATCTTAG+GGG | 0.753553 | 4.3:+35608236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 35606504 | 35613416 | 35606504 | ID=MS.gene056700 |
| chr4.3 | mRNA | 35606504 | 35613416 | 35606504 | ID=MS.gene056700.t1;Parent=MS.gene056700 |
| chr4.3 | exon | 35613371 | 35613416 | 35613371 | ID=MS.gene056700.t1.exon1;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35613371 | 35613416 | 35613371 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35612645 | 35612742 | 35612645 | ID=MS.gene056700.t1.exon2;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35612645 | 35612742 | 35612645 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35612340 | 35612390 | 35612340 | ID=MS.gene056700.t1.exon3;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35612340 | 35612390 | 35612340 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35612099 | 35612212 | 35612099 | ID=MS.gene056700.t1.exon4;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35612099 | 35612212 | 35612099 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35611768 | 35611968 | 35611768 | ID=MS.gene056700.t1.exon5;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35611768 | 35611968 | 35611768 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35611578 | 35611679 | 35611578 | ID=MS.gene056700.t1.exon6;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35611578 | 35611679 | 35611578 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35610634 | 35610741 | 35610634 | ID=MS.gene056700.t1.exon7;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35610634 | 35610741 | 35610634 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35610321 | 35610554 | 35610321 | ID=MS.gene056700.t1.exon8;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35610321 | 35610554 | 35610321 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35609849 | 35610099 | 35609849 | ID=MS.gene056700.t1.exon9;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35609849 | 35610099 | 35609849 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35609562 | 35609733 | 35609562 | ID=MS.gene056700.t1.exon10;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35609562 | 35609733 | 35609562 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35609320 | 35609475 | 35609320 | ID=MS.gene056700.t1.exon11;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35609320 | 35609475 | 35609320 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35609165 | 35609215 | 35609165 | ID=MS.gene056700.t1.exon12;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35609165 | 35609215 | 35609165 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35608903 | 35609034 | 35608903 | ID=MS.gene056700.t1.exon13;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35608903 | 35609034 | 35608903 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35608634 | 35608828 | 35608634 | ID=MS.gene056700.t1.exon14;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35608634 | 35608828 | 35608634 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35608398 | 35608529 | 35608398 | ID=MS.gene056700.t1.exon15;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35608398 | 35608529 | 35608398 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35608142 | 35608315 | 35608142 | ID=MS.gene056700.t1.exon16;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35608142 | 35608315 | 35608142 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35607719 | 35607958 | 35607719 | ID=MS.gene056700.t1.exon17;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35607719 | 35607958 | 35607719 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| chr4.3 | exon | 35606504 | 35606698 | 35606504 | ID=MS.gene056700.t1.exon18;Parent=MS.gene056700.t1 |
| chr4.3 | CDS | 35606504 | 35606698 | 35606504 | ID=cds.MS.gene056700.t1;Parent=MS.gene056700.t1 |
| Gene Sequence |
| Protein sequence |