Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26171.t1 | XP_003616173.1 | 97.6 | 370 | 9 | 0 | 1 | 370 | 1 | 370 | 2.10E-209 | 738 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26171.t1 | G7KFU4 | 97.6 | 370 | 9 | 0 | 1 | 370 | 1 | 370 | 1.5e-209 | 738.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050317 | MS.gene26171 | 0.80841 | 3.14E-50 | -1.69E-46 |
MS.gene058639 | MS.gene26171 | 0.805401 | 1.36E-49 | -1.69E-46 |
MS.gene060563 | MS.gene26171 | 0.800923 | 1.15E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26171.t1 | MTR_5g076930 | 97.568 | 370 | 9 | 0 | 1 | 370 | 1 | 370 | 0.0 | 741 |
MS.gene26171.t1 | MTR_5g076940 | 81.481 | 108 | 18 | 1 | 265 | 370 | 1 | 108 | 1.99e-55 | 177 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26171.t1 | AT3G03210 | 57.713 | 376 | 145 | 6 | 1 | 370 | 1 | 368 | 6.30e-140 | 402 |
Find 67 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTACAAATGCTTCTGATTA+TGG | 0.165491 | 5.4:-57468610 | MS.gene26171:CDS |
CTTTGCTTCATGAGATTGTT+TGG | 0.216592 | 5.4:-57469059 | MS.gene26171:CDS |
TTCTTTGTTGAGTTTAGTTT+TGG | 0.229067 | 5.4:-57468839 | MS.gene26171:CDS |
TGATGAGATGGGTTTGAAAT+TGG | 0.236912 | 5.4:-57468749 | MS.gene26171:CDS |
TCCTAACAATTTGACAGATT+TGG | 0.259155 | 5.4:-57468707 | MS.gene26171:CDS |
GGTTCATCATTCTCAAATTT+CGG | 0.287793 | 5.4:+57468535 | None:intergenic |
TGGATTTGCTTAATGGGTCT+TGG | 0.290048 | 5.4:-57468903 | MS.gene26171:CDS |
TTAGATCGCCGCATTTGTTT+TGG | 0.290342 | 5.4:-57468489 | MS.gene26171:CDS |
CATTGAATTATGATAAGTTT+TGG | 0.296461 | 5.4:-57468990 | MS.gene26171:CDS |
ACATTTGTATCCGGATGTTT+TGG | 0.314178 | 5.4:-57468665 | MS.gene26171:CDS |
TCAGAAACAGAAGGAAAATA+AGG | 0.316073 | 5.4:+57469150 | None:intergenic |
TCTGATTATGGTGACTTGTT+GGG | 0.319697 | 5.4:-57468598 | MS.gene26171:CDS |
TTCTCAAATTTCGGCGAAAC+AGG | 0.321721 | 5.4:+57468544 | None:intergenic |
GCTTAAGAGGAAGGATGTTA+TGG | 0.329703 | 5.4:-57468923 | MS.gene26171:CDS |
GATGTTATGGATTTGCTTAA+TGG | 0.332464 | 5.4:-57468910 | MS.gene26171:CDS |
CCATTTCAACTACTCGATAT+AGG | 0.351255 | 5.4:-57468337 | MS.gene26171:CDS |
GGATTTGCTTAATGGGTCTT+GGG | 0.351297 | 5.4:-57468902 | MS.gene26171:CDS |
ATGTTATGGATTTGCTTAAT+GGG | 0.354857 | 5.4:-57468909 | MS.gene26171:CDS |
TTTGCTTCATGAGATTGTTT+GGG | 0.355412 | 5.4:-57469058 | MS.gene26171:CDS |
TTCTGATTATGGTGACTTGT+TGG | 0.369091 | 5.4:-57468599 | MS.gene26171:CDS |
GTGAGTTTCAGAGGCTTAAG+AGG | 0.380831 | 5.4:-57468936 | MS.gene26171:CDS |
AATGTTTGGTGCTGTTCAAT+TGG | 0.384156 | 5.4:-57469301 | MS.gene26171:CDS |
ACCAAATCTGTCAAATTGTT+AGG | 0.393608 | 5.4:+57468706 | None:intergenic |
TGTTGTATTGTTTGTTCCAA+TGG | 0.395106 | 5.4:-57469262 | MS.gene26171:CDS |
TGGTGATGGGTTCTGGTTTG+TGG | 0.402650 | 5.4:-57468645 | MS.gene26171:CDS |
GGGTCTTGGGTTATGATTGT+AGG | 0.403798 | 5.4:-57468889 | MS.gene26171:CDS |
ATGAATTATTTCTCAACAAA+GGG | 0.415974 | 5.4:+57469010 | None:intergenic |
TAAGAAGAAACATTTGTATC+CGG | 0.417131 | 5.4:-57468674 | MS.gene26171:CDS |
GGATTCGGAGCGGGTTGAAT+CGG | 0.419839 | 5.4:-57468818 | MS.gene26171:CDS |
CCTATATCGAGTAGTTGAAA+TGG | 0.422886 | 5.4:+57468337 | None:intergenic |
CATATTGATATTGATGAGAT+GGG | 0.430367 | 5.4:-57468760 | MS.gene26171:CDS |
TCTGTCAAATTGTTAGGATA+AGG | 0.433218 | 5.4:+57468712 | None:intergenic |
AAATGATGATGTTGTGTTTG+TGG | 0.434990 | 5.4:-57469103 | MS.gene26171:CDS |
TCATATTGATATTGATGAGA+TGG | 0.436718 | 5.4:-57468761 | MS.gene26171:CDS |
AACATAGAGTTTATCAAAGT+CGG | 0.442553 | 5.4:+57468457 | None:intergenic |
GTTGTATTGTTTGTTCCAAT+GGG | 0.452111 | 5.4:-57469261 | MS.gene26171:CDS |
TTGGGAGGTTATGCCAAGTA+AGG | 0.454727 | 5.4:-57469040 | MS.gene26171:CDS |
CTGATTATGGTGACTTGTTG+GGG | 0.455040 | 5.4:-57468597 | MS.gene26171:CDS |
TGCGATGGGTTCTGTTTCAT+CGG | 0.467835 | 5.4:-57468512 | MS.gene26171:CDS |
TTTGTTCCAATGGGTATGGC+TGG | 0.472651 | 5.4:-57469252 | MS.gene26171:CDS |
AATGAATTATTTCTCAACAA+AGG | 0.477205 | 5.4:+57469009 | None:intergenic |
ATTGTTTGTTCCAATGGGTA+TGG | 0.477514 | 5.4:-57469256 | MS.gene26171:CDS |
GGTCTTGGGTTATGATTGTA+GGG | 0.490359 | 5.4:-57468888 | MS.gene26171:CDS |
ATGTTTGGTGCTGTTCAATT+GGG | 0.492915 | 5.4:-57469300 | MS.gene26171:CDS |
AGTGAAGATGAATGATGTAA+TGG | 0.493702 | 5.4:-57468416 | MS.gene26171:CDS |
TTCCAATGGGTATGGCTGGT+TGG | 0.506316 | 5.4:-57469248 | MS.gene26171:CDS |
GCTTCATGAGATTGTTTGGG+AGG | 0.519554 | 5.4:-57469055 | MS.gene26171:CDS |
TGAAGAATAAAACTTTGTTA+CGG | 0.526592 | 5.4:+57469217 | None:intergenic |
CGGAGCGGGTTGAATCGGTT+AGG | 0.533530 | 5.4:-57468813 | MS.gene26171:CDS |
TGGAGTAGATTGAATTCTGT+TGG | 0.534685 | 5.4:-57468964 | MS.gene26171:CDS |
TTGGTGAATGTGAGTTTCAG+AGG | 0.541342 | 5.4:-57468945 | MS.gene26171:CDS |
GAACCCATCACCAAAACATC+CGG | 0.544298 | 5.4:+57468655 | None:intergenic |
GTTTCAGAGGCTTAAGAGGA+AGG | 0.545889 | 5.4:-57468932 | MS.gene26171:CDS |
GGATTATTGAGTTTGAATTG+TGG | 0.565016 | 5.4:-57468316 | MS.gene26171:CDS |
TGCCAACCAGCCATACCCAT+TGG | 0.570463 | 5.4:+57469246 | None:intergenic |
TGAGAATGATGAACCTGCGA+TGG | 0.581367 | 5.4:-57468527 | MS.gene26171:CDS |
TTGTAGGGGATTCACAAGCT+AGG | 0.585033 | 5.4:-57468873 | MS.gene26171:CDS |
GGAATCAAATGTACAGATGA+TGG | 0.585892 | 5.4:-57468295 | MS.gene26171:CDS |
GATGATGGTATGCATTATGA+TGG | 0.601643 | 5.4:-57468280 | MS.gene26171:CDS |
GTCTTGGGTTATGATTGTAG+GGG | 0.606642 | 5.4:-57468887 | MS.gene26171:CDS |
GAGAATGATGAACCTGCGAT+GGG | 0.610564 | 5.4:-57468526 | MS.gene26171:CDS |
CTCATAAAATCAGAAACAGA+AGG | 0.611262 | 5.4:+57469141 | None:intergenic |
AAACTCTATGTTGAATACGC+AGG | 0.625290 | 5.4:-57468446 | MS.gene26171:CDS |
GTTGTGTTTGTGGAAGATCG+TGG | 0.630808 | 5.4:-57469093 | MS.gene26171:CDS |
GATGAAACAGAACCCATCGC+AGG | 0.633804 | 5.4:+57468514 | None:intergenic |
AAGATGAATGATGTAATGGA+AGG | 0.671697 | 5.4:-57468412 | MS.gene26171:CDS |
ATACCTAGCCAAAACAAATG+CGG | 0.712684 | 5.4:+57468481 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTGAAATTGGATTTTATTT+GGG | - | chr5.4:57468773-57468792 | MS.gene26171:CDS | 15.0% |
!! | TGAAGAATAAAACTTTGTTA+CGG | + | chr5.4:57468296-57468315 | None:intergenic | 20.0% |
!!! | AATGAATTATTTCTCAACAA+AGG | + | chr5.4:57468504-57468523 | None:intergenic | 20.0% |
!!! | ATGAATTATTTCTCAACAAA+GGG | + | chr5.4:57468503-57468522 | None:intergenic | 20.0% |
!!! | CATTGAATTATGATAAGTTT+TGG | - | chr5.4:57468520-57468539 | MS.gene26171:CDS | 20.0% |
!!! | GTTTGAAATTGGATTTTATT+TGG | - | chr5.4:57468772-57468791 | MS.gene26171:CDS | 20.0% |
! | AACATAGAGTTTATCAAAGT+CGG | + | chr5.4:57469056-57469075 | None:intergenic | 25.0% |
! | ATTACAAATGCTTCTGATTA+TGG | - | chr5.4:57468900-57468919 | MS.gene26171:CDS | 25.0% |
! | CATATTGATATTGATGAGAT+GGG | - | chr5.4:57468750-57468769 | MS.gene26171:CDS | 25.0% |
! | TAAGAAGAAACATTTGTATC+CGG | - | chr5.4:57468836-57468855 | MS.gene26171:CDS | 25.0% |
! | TCATATTGATATTGATGAGA+TGG | - | chr5.4:57468749-57468768 | MS.gene26171:CDS | 25.0% |
!! | ATGTTATGGATTTGCTTAAT+GGG | - | chr5.4:57468601-57468620 | MS.gene26171:CDS | 25.0% |
!!! | AACAAAGTTTTATTCTTCAG+TGG | - | chr5.4:57468297-57468316 | MS.gene26171:CDS | 25.0% |
!!! | ATTATGATAAGTTTTGGTCT+TGG | - | chr5.4:57468526-57468545 | MS.gene26171:CDS | 25.0% |
!!! | TTAGGAGTTTTTTGTTTAAG+AGG | - | chr5.4:57468715-57468734 | MS.gene26171:CDS | 25.0% |
!!! | TTCTTTGTTGAGTTTAGTTT+TGG | - | chr5.4:57468671-57468690 | MS.gene26171:CDS | 25.0% |
ACCAAATCTGTCAAATTGTT+AGG | + | chr5.4:57468807-57468826 | None:intergenic | 30.0% | |
AGTGAAGATGAATGATGTAA+TGG | - | chr5.4:57469094-57469113 | MS.gene26171:CDS | 30.0% | |
CTCATAAAATCAGAAACAGA+AGG | + | chr5.4:57468372-57468391 | None:intergenic | 30.0% | |
GGATTATTGAGTTTGAATTG+TGG | - | chr5.4:57469194-57469213 | MS.gene26171:CDS | 30.0% | |
GGTTCATCATTCTCAAATTT+CGG | + | chr5.4:57468978-57468997 | None:intergenic | 30.0% | |
GTTGTATTGTTTGTTCCAAT+GGG | - | chr5.4:57468249-57468268 | MS.gene26171:CDS | 30.0% | |
TCAGAAACAGAAGGAAAATA+AGG | + | chr5.4:57468363-57468382 | None:intergenic | 30.0% | |
TCCTAACAATTTGACAGATT+TGG | - | chr5.4:57468803-57468822 | MS.gene26171:CDS | 30.0% | |
TCTGTCAAATTGTTAGGATA+AGG | + | chr5.4:57468801-57468820 | None:intergenic | 30.0% | |
TGTTGTATTGTTTGTTCCAA+TGG | - | chr5.4:57468248-57468267 | MS.gene26171:CDS | 30.0% | |
TTTGCTTCATGAGATTGTTT+GGG | - | chr5.4:57468452-57468471 | MS.gene26171:CDS | 30.0% | |
! | AAATGATGATGTTGTGTTTG+TGG | - | chr5.4:57468407-57468426 | MS.gene26171:CDS | 30.0% |
! | AAGATGAATGATGTAATGGA+AGG | - | chr5.4:57469098-57469117 | MS.gene26171:CDS | 30.0% |
! | GATGTTATGGATTTGCTTAA+TGG | - | chr5.4:57468600-57468619 | MS.gene26171:CDS | 30.0% |
! | TTCGAAAAAGTGGTATTTTG+AGG | - | chr5.4:57469138-57469157 | MS.gene26171:CDS | 30.0% |
!! | TCGAAAAAGTGGTATTTTGA+GGG | - | chr5.4:57469139-57469158 | MS.gene26171:CDS | 30.0% |
!!! | GTTGAGTTTAGTTTTGGATT+CGG | - | chr5.4:57468677-57468696 | MS.gene26171:CDS | 30.0% |
AAACTCTATGTTGAATACGC+AGG | - | chr5.4:57469064-57469083 | MS.gene26171:CDS | 35.0% | |
AAAGGGTCAAAAACCTTACT+TGG | + | chr5.4:57468486-57468505 | None:intergenic | 35.0% | |
ATACCTAGCCAAAACAAATG+CGG | + | chr5.4:57469032-57469051 | None:intergenic | 35.0% | |
ATTGTTTGTTCCAATGGGTA+TGG | - | chr5.4:57468254-57468273 | MS.gene26171:CDS | 35.0% | |
CCATTTCAACTACTCGATAT+AGG | - | chr5.4:57469173-57469192 | MS.gene26171:CDS | 35.0% | |
CCTATATCGAGTAGTTGAAA+TGG | + | chr5.4:57469176-57469195 | None:intergenic | 35.0% | |
CTTTGCTTCATGAGATTGTT+TGG | - | chr5.4:57468451-57468470 | MS.gene26171:CDS | 35.0% | |
GGAATCAAATGTACAGATGA+TGG | - | chr5.4:57469215-57469234 | MS.gene26171:CDS | 35.0% | |
TGGAGTAGATTGAATTCTGT+TGG | - | chr5.4:57468546-57468565 | MS.gene26171:CDS | 35.0% | |
! | ACATTTGTATCCGGATGTTT+TGG | - | chr5.4:57468845-57468864 | MS.gene26171:CDS | 35.0% |
! | CTTTTCATTACTCTTGCAGT+TGG | - | chr5.4:57468324-57468343 | MS.gene26171:CDS | 35.0% |
! | GATGATGGTATGCATTATGA+TGG | - | chr5.4:57469230-57469249 | MS.gene26171:CDS | 35.0% |
! | TGATGAGATGGGTTTGAAAT+TGG | - | chr5.4:57468761-57468780 | MS.gene26171:CDS | 35.0% |
! | TTCTGATTATGGTGACTTGT+TGG | - | chr5.4:57468911-57468930 | MS.gene26171:CDS | 35.0% |
!! | ATGTTTGGTGCTGTTCAATT+GGG | - | chr5.4:57468210-57468229 | MS.gene26171:CDS | 35.0% |
!! | TCTGATTATGGTGACTTGTT+GGG | - | chr5.4:57468912-57468931 | MS.gene26171:CDS | 35.0% |
GCTTAAGAGGAAGGATGTTA+TGG | - | chr5.4:57468587-57468606 | MS.gene26171:CDS | 40.0% | |
GGTCTTGGGTTATGATTGTA+GGG | - | chr5.4:57468622-57468641 | MS.gene26171:CDS | 40.0% | |
GTCTTGGGTTATGATTGTAG+GGG | - | chr5.4:57468623-57468642 | MS.gene26171:CDS | 40.0% | |
TTCTCAAATTTCGGCGAAAC+AGG | + | chr5.4:57468969-57468988 | None:intergenic | 40.0% | |
TTGGTGAATGTGAGTTTCAG+AGG | - | chr5.4:57468565-57468584 | MS.gene26171:CDS | 40.0% | |
! | GGATTTGCTTAATGGGTCTT+GGG | - | chr5.4:57468608-57468627 | MS.gene26171:CDS | 40.0% |
! | TGGATTTGCTTAATGGGTCT+TGG | - | chr5.4:57468607-57468626 | MS.gene26171:CDS | 40.0% |
! | TTAGATCGCCGCATTTGTTT+TGG | - | chr5.4:57469021-57469040 | MS.gene26171:CDS | 40.0% |
!! | AGTGGTATTTTGAGGGAGTT+TGG | - | chr5.4:57469146-57469165 | MS.gene26171:CDS | 40.0% |
!! | CTGATTATGGTGACTTGTTG+GGG | - | chr5.4:57468913-57468932 | MS.gene26171:CDS | 40.0% |
!!! | GTTTAGTTTTGGATTCGGAG+CGG | - | chr5.4:57468682-57468701 | MS.gene26171:CDS | 40.0% |
!!! | TATCCGGATGTTTTGGTGAT+GGG | - | chr5.4:57468852-57468871 | MS.gene26171:CDS | 40.0% |
!!! | TTTAGTTTTGGATTCGGAGC+GGG | - | chr5.4:57468683-57468702 | MS.gene26171:CDS | 40.0% |
GAACCCATCACCAAAACATC+CGG | + | chr5.4:57468858-57468877 | None:intergenic | 45.0% | |
GAGAATGATGAACCTGCGAT+GGG | - | chr5.4:57468984-57469003 | MS.gene26171:CDS | 45.0% | |
GAGAGAGAGCTTCGAAAAAG+TGG | - | chr5.4:57469128-57469147 | MS.gene26171:CDS | 45.0% | |
GCTTCATGAGATTGTTTGGG+AGG | - | chr5.4:57468455-57468474 | MS.gene26171:CDS | 45.0% | |
GGGTCTTGGGTTATGATTGT+AGG | - | chr5.4:57468621-57468640 | MS.gene26171:CDS | 45.0% | |
GTGAGTTTCAGAGGCTTAAG+AGG | - | chr5.4:57468574-57468593 | MS.gene26171:CDS | 45.0% | |
GTTGTGTTTGTGGAAGATCG+TGG | - | chr5.4:57468417-57468436 | MS.gene26171:CDS | 45.0% | |
GTTTCAGAGGCTTAAGAGGA+AGG | - | chr5.4:57468578-57468597 | MS.gene26171:CDS | 45.0% | |
TGAGAATGATGAACCTGCGA+TGG | - | chr5.4:57468983-57469002 | MS.gene26171:CDS | 45.0% | |
TTGGGAGGTTATGCCAAGTA+AGG | - | chr5.4:57468470-57468489 | MS.gene26171:CDS | 45.0% | |
TTGTAGGGGATTCACAAGCT+AGG | - | chr5.4:57468637-57468656 | MS.gene26171:CDS | 45.0% | |
TTTGTTCCAATGGGTATGGC+TGG | - | chr5.4:57468258-57468277 | MS.gene26171:CDS | 45.0% | |
! | TGCGATGGGTTCTGTTTCAT+CGG | - | chr5.4:57468998-57469017 | MS.gene26171:CDS | 45.0% |
!! | GGTATTTTGAGGGAGTTTGG+TGG | - | chr5.4:57469149-57469168 | MS.gene26171:CDS | 45.0% |
!!! | GATGTTTTGGTGATGGGTTC+TGG | - | chr5.4:57468858-57468877 | MS.gene26171:CDS | 45.0% |
!!! | GTATCCGGATGTTTTGGTGA+TGG | - | chr5.4:57468851-57468870 | MS.gene26171:CDS | 45.0% |
GATGAAACAGAACCCATCGC+AGG | + | chr5.4:57468999-57469018 | None:intergenic | 50.0% | |
TTCCAATGGGTATGGCTGGT+TGG | - | chr5.4:57468262-57468281 | MS.gene26171:CDS | 50.0% | |
!! | TGGTGATGGGTTCTGGTTTG+TGG | - | chr5.4:57468865-57468884 | MS.gene26171:CDS | 50.0% |
!!! | TCGCCGCATTTGTTTTGGCT+AGG | - | chr5.4:57469026-57469045 | MS.gene26171:CDS | 50.0% |
TGCCAACCAGCCATACCCAT+TGG | + | chr5.4:57468267-57468286 | None:intergenic | 55.0% | |
!! | GGATTCGGAGCGGGTTGAAT+CGG | - | chr5.4:57468692-57468711 | MS.gene26171:CDS | 55.0% |
!! | CGGAGCGGGTTGAATCGGTT+AGG | - | chr5.4:57468697-57468716 | MS.gene26171:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 57468210 | 57469322 | 57468210 | ID=MS.gene26171 |
chr5.4 | mRNA | 57468210 | 57469322 | 57468210 | ID=MS.gene26171.t1;Parent=MS.gene26171 |
chr5.4 | exon | 57468210 | 57469322 | 57468210 | ID=MS.gene26171.t1.exon1;Parent=MS.gene26171.t1 |
chr5.4 | CDS | 57468210 | 57469322 | 57468210 | ID=cds.MS.gene26171.t1;Parent=MS.gene26171.t1 |
Gene Sequence |
Protein sequence |