Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26217.t1 | RHN78386.1 | 84.4 | 90 | 14 | 0 | 19 | 108 | 455 | 544 | 3.10E-34 | 154.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26217.t1 | F4I507 | 64.3 | 98 | 35 | 0 | 11 | 108 | 431 | 528 | 1.3e-28 | 127.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26217.t1 | A0A072VGP3 | 84.4 | 90 | 14 | 0 | 19 | 108 | 455 | 544 | 2.3e-34 | 154.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051594 | MS.gene26217 | 0.8056 | 1.23E-49 | -1.69E-46 |
MS.gene053082 | MS.gene26217 | 0.819116 | 1.38E-52 | -1.69E-46 |
MS.gene058294 | MS.gene26217 | 0.82809 | 1.09E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26217.t1 | MTR_1g038793 | 84.444 | 90 | 14 | 0 | 19 | 108 | 455 | 544 | 2.94e-46 | 159 |
MS.gene26217.t1 | MTR_1g114540 | 72.152 | 79 | 21 | 1 | 30 | 108 | 456 | 533 | 1.11e-29 | 112 |
MS.gene26217.t1 | MTR_7g026950 | 83.929 | 56 | 9 | 0 | 57 | 112 | 34 | 89 | 2.73e-28 | 99.8 |
MS.gene26217.t1 | MTR_2g081070 | 60.465 | 86 | 34 | 0 | 22 | 107 | 479 | 564 | 8.21e-27 | 103 |
MS.gene26217.t1 | MTR_8g464480 | 48.193 | 83 | 43 | 0 | 25 | 107 | 463 | 545 | 3.41e-18 | 79.0 |
MS.gene26217.t1 | MTR_3g105200 | 43.678 | 87 | 46 | 2 | 22 | 107 | 354 | 438 | 2.75e-15 | 70.9 |
MS.gene26217.t1 | MTR_3g105200 | 43.678 | 87 | 46 | 2 | 22 | 107 | 354 | 438 | 2.77e-15 | 70.9 |
MS.gene26217.t1 | MTR_4g125690 | 44.944 | 89 | 46 | 2 | 22 | 109 | 357 | 443 | 3.94e-15 | 70.5 |
MS.gene26217.t1 | MTR_1g069305 | 41.111 | 90 | 50 | 2 | 19 | 107 | 49 | 136 | 2.65e-12 | 60.1 |
MS.gene26217.t1 | MTR_2g062660 | 43.333 | 90 | 48 | 2 | 19 | 107 | 354 | 441 | 3.17e-12 | 62.0 |
MS.gene26217.t1 | MTR_1g080600 | 43.678 | 87 | 46 | 2 | 22 | 107 | 356 | 440 | 6.56e-12 | 61.2 |
MS.gene26217.t1 | MTR_1g070280 | 41.379 | 87 | 48 | 2 | 22 | 107 | 358 | 442 | 1.45e-11 | 60.1 |
MS.gene26217.t1 | MTR_1g070280 | 41.379 | 87 | 48 | 2 | 22 | 107 | 358 | 442 | 1.55e-11 | 60.1 |
MS.gene26217.t1 | MTR_1g070280 | 41.379 | 87 | 48 | 2 | 22 | 107 | 168 | 252 | 1.57e-11 | 60.1 |
MS.gene26217.t1 | MTR_1g070280 | 41.379 | 87 | 48 | 2 | 22 | 107 | 358 | 442 | 1.59e-11 | 60.1 |
MS.gene26217.t1 | MTR_7g115430 | 43.678 | 87 | 46 | 2 | 22 | 107 | 357 | 441 | 2.92e-11 | 59.3 |
MS.gene26217.t1 | MTR_1g037500 | 41.111 | 90 | 50 | 2 | 19 | 107 | 356 | 443 | 3.86e-11 | 58.9 |
MS.gene26217.t1 | MTR_1g070400 | 40.230 | 87 | 49 | 2 | 22 | 107 | 354 | 438 | 5.57e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26217.t1 | AT1G50360 | 64.286 | 98 | 35 | 0 | 11 | 108 | 431 | 528 | 9.17e-37 | 132 |
MS.gene26217.t1 | AT3G19960 | 68.478 | 92 | 29 | 0 | 17 | 108 | 482 | 573 | 1.01e-36 | 132 |
MS.gene26217.t1 | AT3G19960 | 70.115 | 87 | 26 | 0 | 22 | 108 | 450 | 536 | 1.90e-35 | 128 |
MS.gene26217.t1 | AT3G19960 | 68.889 | 90 | 28 | 0 | 19 | 108 | 447 | 536 | 4.03e-35 | 127 |
MS.gene26217.t1 | AT3G19960 | 68.889 | 90 | 28 | 0 | 19 | 108 | 447 | 536 | 4.03e-35 | 127 |
MS.gene26217.t1 | AT3G19960 | 68.889 | 90 | 28 | 0 | 19 | 108 | 447 | 536 | 4.03e-35 | 127 |
MS.gene26217.t1 | AT5G54280 | 59.036 | 83 | 34 | 0 | 25 | 107 | 502 | 584 | 4.89e-26 | 101 |
MS.gene26217.t1 | AT5G54280 | 59.036 | 83 | 34 | 0 | 25 | 107 | 312 | 394 | 4.89e-26 | 101 |
MS.gene26217.t1 | AT4G27370 | 54.023 | 87 | 40 | 0 | 21 | 107 | 451 | 537 | 6.88e-24 | 95.5 |
MS.gene26217.t1 | AT4G27370 | 54.023 | 87 | 40 | 0 | 21 | 107 | 451 | 537 | 7.59e-24 | 95.5 |
MS.gene26217.t1 | AT4G27370 | 54.023 | 87 | 40 | 0 | 21 | 107 | 451 | 537 | 7.59e-24 | 95.5 |
MS.gene26217.t1 | AT4G27370 | 54.023 | 87 | 40 | 0 | 21 | 107 | 449 | 535 | 7.81e-24 | 95.1 |
MS.gene26217.t1 | AT1G54560 | 49.425 | 87 | 41 | 2 | 22 | 107 | 357 | 441 | 2.96e-15 | 70.9 |
MS.gene26217.t1 | AT1G54560 | 49.425 | 87 | 41 | 2 | 22 | 107 | 360 | 444 | 3.02e-15 | 70.9 |
MS.gene26217.t1 | AT1G08730 | 45.977 | 87 | 44 | 2 | 22 | 107 | 365 | 449 | 1.59e-14 | 68.6 |
MS.gene26217.t1 | AT1G08730 | 45.977 | 87 | 44 | 2 | 22 | 107 | 357 | 441 | 1.70e-14 | 68.6 |
MS.gene26217.t1 | AT4G33200 | 39.583 | 96 | 55 | 2 | 13 | 107 | 352 | 445 | 2.43e-13 | 65.5 |
MS.gene26217.t1 | AT4G33200 | 39.583 | 96 | 55 | 2 | 13 | 107 | 352 | 445 | 2.55e-13 | 65.5 |
MS.gene26217.t1 | AT4G33200 | 39.583 | 96 | 55 | 2 | 13 | 107 | 352 | 445 | 2.65e-13 | 65.1 |
MS.gene26217.t1 | AT4G33200 | 39.583 | 96 | 55 | 2 | 13 | 107 | 352 | 445 | 2.65e-13 | 65.1 |
MS.gene26217.t1 | AT1G17580 | 44.828 | 87 | 45 | 2 | 22 | 107 | 354 | 438 | 4.03e-13 | 64.7 |
MS.gene26217.t1 | AT5G20490 | 42.529 | 87 | 47 | 2 | 22 | 107 | 357 | 441 | 8.35e-13 | 63.9 |
MS.gene26217.t1 | AT5G20490 | 42.529 | 87 | 47 | 2 | 22 | 107 | 291 | 375 | 8.41e-13 | 63.9 |
MS.gene26217.t1 | AT5G20490 | 42.529 | 87 | 47 | 2 | 22 | 107 | 356 | 440 | 8.51e-13 | 63.9 |
MS.gene26217.t1 | AT5G43900 | 40.404 | 99 | 53 | 3 | 13 | 107 | 345 | 441 | 6.04e-12 | 61.2 |
MS.gene26217.t1 | AT5G43900 | 40.404 | 99 | 53 | 3 | 13 | 107 | 405 | 501 | 6.17e-12 | 61.2 |
MS.gene26217.t1 | AT5G43900 | 40.404 | 99 | 53 | 3 | 13 | 107 | 402 | 498 | 6.23e-12 | 61.2 |
MS.gene26217.t1 | AT3G58160 | 43.158 | 95 | 51 | 2 | 14 | 107 | 347 | 439 | 6.66e-12 | 61.2 |
MS.gene26217.t1 | AT3G58160 | 43.158 | 95 | 51 | 2 | 14 | 107 | 347 | 439 | 7.13e-12 | 61.2 |
MS.gene26217.t1 | AT3G58160 | 43.158 | 95 | 51 | 2 | 14 | 107 | 347 | 439 | 7.13e-12 | 61.2 |
MS.gene26217.t1 | AT3G58160 | 43.158 | 95 | 51 | 2 | 14 | 107 | 347 | 439 | 7.18e-12 | 61.2 |
MS.gene26217.t1 | AT3G58160 | 43.158 | 95 | 51 | 2 | 14 | 107 | 347 | 439 | 7.18e-12 | 61.2 |
MS.gene26217.t1 | AT2G31900 | 40.000 | 90 | 51 | 2 | 19 | 107 | 354 | 441 | 1.33e-11 | 60.5 |
MS.gene26217.t1 | AT2G31900 | 40.000 | 90 | 51 | 2 | 19 | 107 | 354 | 441 | 1.33e-11 | 60.5 |
MS.gene26217.t1 | AT2G31900 | 40.000 | 90 | 51 | 2 | 19 | 107 | 239 | 326 | 1.34e-11 | 60.5 |
MS.gene26217.t1 | AT2G31900 | 40.000 | 90 | 51 | 2 | 19 | 107 | 354 | 441 | 1.34e-11 | 60.5 |
MS.gene26217.t1 | AT2G31900 | 40.000 | 90 | 51 | 2 | 19 | 107 | 96 | 183 | 1.44e-11 | 60.5 |
MS.gene26217.t1 | AT1G04160 | 42.529 | 87 | 47 | 2 | 22 | 107 | 358 | 442 | 1.86e-11 | 60.1 |
MS.gene26217.t1 | AT1G04160 | 42.529 | 87 | 47 | 2 | 22 | 107 | 358 | 442 | 2.17e-11 | 59.7 |
Find 16 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACTCGCAAAATGAAATT+TGG | 0.131708 | 5.4:+58202083 | MS.gene26217:CDS |
CCTGTGTTTGTGTCAACTTT+TGG | 0.307386 | 5.4:-58202121 | None:intergenic |
TATATTCATGGCAGTTTGAT+TGG | 0.322728 | 5.4:+58202406 | MS.gene26217:CDS |
ATCAGTGTTCTAGATATATA+TGG | 0.386134 | 5.4:+58202486 | MS.gene26217:CDS |
GTAAATAAATCACTTGCTAT+TGG | 0.388933 | 5.4:+58202441 | MS.gene26217:CDS |
CAACTCGCAAAATGAAATTT+GGG | 0.389652 | 5.4:+58202084 | MS.gene26217:CDS |
TAGAACACTGATTGATCTTC+CGG | 0.394578 | 5.4:-58202475 | None:intergenic |
TGGCGAAGTCTATATATTCA+TGG | 0.407749 | 5.4:+58202394 | MS.gene26217:CDS |
TTACACGTTGGCGAATTGAT+TGG | 0.433829 | 5.4:+58202029 | MS.gene26217:CDS |
TTCATGGCAGTTTGATTGGT+TGG | 0.442612 | 5.4:+58202410 | MS.gene26217:CDS |
AATTAATGCAAGAGATACTT+TGG | 0.483020 | 5.4:+58202374 | MS.gene26217:CDS |
TCTAAAGGTTTATTACACGT+TGG | 0.602914 | 5.4:+58202017 | MS.gene26217:intron |
GCTATTGGCAAAAGACGTAC+CGG | 0.606224 | 5.4:+58202456 | MS.gene26217:CDS |
AACTCACATAGCATCTCTTG+TGG | 0.637776 | 5.4:-58200699 | None:intergenic |
CGTATTTACAAGGATGAGCG+TGG | 0.640909 | 5.4:+58200650 | None:intergenic |
CCAAAAGTTGACACAAACAC+AGG | 0.678534 | 5.4:+58202121 | MS.gene26217:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATACTTTAAAATTTAAAC+AGG | - | chr5.4:58202586-58202605 | None:intergenic | 10.0% |
!!! | GTTTAAATTTTAAAGTATTT+TGG | + | chr5.4:58202586-58202605 | MS.gene26217:intron | 10.0% |
!! | AAAAGATTAGAAAAGAATAT+AGG | + | chr5.4:58200976-58200995 | MS.gene26217:intron | 15.0% |
!! | AAAGATTAGAAAAGAATATA+GGG | + | chr5.4:58200977-58200996 | MS.gene26217:intron | 15.0% |
!! | ATATTAAAAATTTAGAGGAA+TGG | - | chr5.4:58201663-58201682 | None:intergenic | 15.0% |
!! | CCAATACTATATATAAATTA+CGG | - | chr5.4:58201850-58201869 | None:intergenic | 15.0% |
!! | CGTAATTTATATATAGTATT+GGG | + | chr5.4:58201848-58201867 | MS.gene26217:intron | 15.0% |
!! | TATTAAAAATTTAGAGGAAT+GGG | - | chr5.4:58201662-58201681 | None:intergenic | 15.0% |
!!! | AATAATTTTGTGATTCATAT+TGG | - | chr5.4:58200892-58200911 | None:intergenic | 15.0% |
!!! | TGTTTAATTTTAGTACATAT+AGG | + | chr5.4:58201138-58201157 | MS.gene26217:intron | 15.0% |
!!! | TTCCTCTAAATTTTTAATAT+CGG | + | chr5.4:58201663-58201682 | MS.gene26217:intron | 15.0% |
!!! | TTTAAAATTTAAACAGGAAA+AGG | - | chr5.4:58202580-58202599 | None:intergenic | 15.0% |
!! | ATAATGACAACAAATTGATA+TGG | - | chr5.4:58201576-58201595 | None:intergenic | 20.0% |
!! | CCGTAATTTATATATAGTAT+TGG | + | chr5.4:58201847-58201866 | MS.gene26217:intron | 20.0% |
!! | CTAAAAGGAAAATAAATAGT+AGG | + | chr5.4:58201548-58201567 | MS.gene26217:intron | 20.0% |
!! | GAATCACAAAATTATTTCAA+TGG | + | chr5.4:58200896-58200915 | MS.gene26217:intron | 20.0% |
!! | TAAGAAAAATGTTCAAGTAA+GGG | - | chr5.4:58201995-58202014 | None:intergenic | 20.0% |
!!! | AACATTTTTCTTACTTCTAA+AGG | + | chr5.4:58202002-58202021 | MS.gene26217:intron | 20.0% |
!!! | ACTATTTATTTTCCTTTTAG+CGG | - | chr5.4:58201548-58201567 | None:intergenic | 20.0% |
!!! | TATATATAGTATTGGGAAAA+AGG | + | chr5.4:58201855-58201874 | MS.gene26217:intron | 20.0% |
!!! | TGATATTTTGACTAAGAATA+TGG | - | chr5.4:58202228-58202247 | None:intergenic | 20.0% |
! | AATTAATGCAAGAGATACTT+TGG | + | chr5.4:58202374-58202393 | MS.gene26217:CDS | 25.0% |
! | ACACTTGAACAAATCAATTA+AGG | + | chr5.4:58201364-58201383 | MS.gene26217:intron | 25.0% |
! | CACTTGAACAAATCAATTAA+GGG | + | chr5.4:58201365-58201384 | MS.gene26217:intron | 25.0% |
! | CATATTATACTTTGTCTTGT+AGG | + | chr5.4:58202350-58202369 | MS.gene26217:intron | 25.0% |
! | GAATTGCTATAATCTTAATG+CGG | + | chr5.4:58200805-58200824 | MS.gene26217:intron | 25.0% |
! | GTAAGAAAAATGTTCAAGTA+AGG | - | chr5.4:58201996-58202015 | None:intergenic | 25.0% |
! | TAAAATAAATAGATCCTCTG+CGG | - | chr5.4:58201082-58201101 | None:intergenic | 25.0% |
! | TCATATTGAAATGATCATAG+AGG | - | chr5.4:58201622-58201641 | None:intergenic | 25.0% |
! | TGCCGATATTAAAAATTTAG+AGG | - | chr5.4:58201668-58201687 | None:intergenic | 25.0% |
! | TGTGTTGAATAATGAATACT+GGG | + | chr5.4:58202156-58202175 | MS.gene26217:intron | 25.0% |
! | TTAAACAGGAAAAGGATAAT+TGG | - | chr5.4:58202572-58202591 | None:intergenic | 25.0% |
! | TTGTGTTGAATAATGAATAC+TGG | + | chr5.4:58202155-58202174 | MS.gene26217:intron | 25.0% |
!! | ATCAGTGTTCTAGATATATA+TGG | + | chr5.4:58202486-58202505 | MS.gene26217:CDS | 25.0% |
!! | TGTTGACTAAAAGTAATACA+TGG | + | chr5.4:58201110-58201129 | MS.gene26217:intron | 25.0% |
!! | TTGACTTGATAGTATATGTT+TGG | - | chr5.4:58201480-58201499 | None:intergenic | 25.0% |
!!! | GTAAATAAATCACTTGCTAT+TGG | + | chr5.4:58202441-58202460 | MS.gene26217:CDS | 25.0% |
ACAAGTCCAACTGTTAATAT+GGG | - | chr5.4:58201228-58201247 | None:intergenic | 30.0% | |
CAAATGTAATGAACACATGA+TGG | + | chr5.4:58202304-58202323 | MS.gene26217:intron | 30.0% | |
CAACTCGCAAAATGAAATTT+GGG | + | chr5.4:58202084-58202103 | MS.gene26217:CDS | 30.0% | |
CATCATGTGTTCATTACATT+TGG | - | chr5.4:58202306-58202325 | None:intergenic | 30.0% | |
GAATAACTCGAAATGTTTGA+AGG | - | chr5.4:58201965-58201984 | None:intergenic | 30.0% | |
TACAAGTCCAACTGTTAATA+TGG | - | chr5.4:58201229-58201248 | None:intergenic | 30.0% | |
TATATTCATGGCAGTTTGAT+TGG | + | chr5.4:58202406-58202425 | MS.gene26217:CDS | 30.0% | |
TCAACTCGCAAAATGAAATT+TGG | + | chr5.4:58202083-58202102 | MS.gene26217:CDS | 30.0% | |
TCTAAAGGTTTATTACACGT+TGG | + | chr5.4:58202017-58202036 | MS.gene26217:intron | 30.0% | |
TTCAATGGAGAATTAGACTT+AGG | + | chr5.4:58200911-58200930 | MS.gene26217:intron | 30.0% | |
TTGAACAAATCAATTAAGGG+AGG | + | chr5.4:58201368-58201387 | MS.gene26217:intron | 30.0% | |
TTGTAGTTGACAATGTTACT+CGG | + | chr5.4:58201014-58201033 | MS.gene26217:intron | 30.0% | |
TTTGAGAAATAACCGCTAAA+AGG | + | chr5.4:58201533-58201552 | MS.gene26217:intron | 30.0% | |
! | TAGAGCAAGATACTGATTAA+GGG | - | chr5.4:58200743-58200762 | None:intergenic | 30.0% |
! | TTGGCATTTTACAAATTGAC+CGG | - | chr5.4:58202287-58202306 | None:intergenic | 30.0% |
! | TTTTAATATCGGCACAAGAT+AGG | + | chr5.4:58201674-58201693 | MS.gene26217:intron | 30.0% |
ATGGAGAATTAGACTTAGGA+AGG | + | chr5.4:58200915-58200934 | MS.gene26217:intron | 35.0% | |
ATTAACAAGTCAGTGAAGTC+AGG | - | chr5.4:58200858-58200877 | None:intergenic | 35.0% | |
ATTGTCAACTACAACAGAGT+AGG | - | chr5.4:58201008-58201027 | None:intergenic | 35.0% | |
CAACACCAACCCAAAAAATA+TGG | - | chr5.4:58202189-58202208 | None:intergenic | 35.0% | |
GAAAAATGTTCAAGTAAGGG+AGG | - | chr5.4:58201992-58202011 | None:intergenic | 35.0% | |
TCTTCAAATACCACATCACA+AGG | - | chr5.4:58201445-58201464 | None:intergenic | 35.0% | |
TGACACAAACACAGGTAAAA+TGG | + | chr5.4:58202129-58202148 | MS.gene26217:intron | 35.0% | |
TGGCGAAGTCTATATATTCA+TGG | + | chr5.4:58202394-58202413 | MS.gene26217:CDS | 35.0% | |
! | AGAGCAAGATACTGATTAAG+GGG | - | chr5.4:58200742-58200761 | None:intergenic | 35.0% |
! | CTAGAGCAAGATACTGATTA+AGG | - | chr5.4:58200744-58200763 | None:intergenic | 35.0% |
! | TAGAACACTGATTGATCTTC+CGG | - | chr5.4:58202478-58202497 | None:intergenic | 35.0% |
! | TTCTGTTAACCTTTAGAAGC+TGG | - | chr5.4:58201331-58201350 | None:intergenic | 35.0% |
!!! | GCTTACCATATTTTTTGGGT+TGG | + | chr5.4:58202181-58202200 | MS.gene26217:intron | 35.0% |
!!! | GGCTGCTTACCATATTTTTT+GGG | + | chr5.4:58202177-58202196 | MS.gene26217:intron | 35.0% |
!!! | TATTTTTTGGGTTGGTGTTG+TGG | + | chr5.4:58202189-58202208 | MS.gene26217:intron | 35.0% |
AACTCACATAGCATCTCTTG+TGG | - | chr5.4:58200702-58200721 | None:intergenic | 40.0% | |
AAGTCATTCTGCTCAATGAG+TGG | + | chr5.4:58202251-58202270 | MS.gene26217:intron | 40.0% | |
ACTGCTCCCATATTAACAGT+TGG | + | chr5.4:58201219-58201238 | MS.gene26217:intron | 40.0% | |
CCAAAAGTTGACACAAACAC+AGG | + | chr5.4:58202121-58202140 | MS.gene26217:CDS | 40.0% | |
CGGCAAAAAGGAGAATATCA+AGG | - | chr5.4:58201062-58201081 | None:intergenic | 40.0% | |
CTGTGTATTGTCCATACTTC+AGG | + | chr5.4:58201703-58201722 | MS.gene26217:intron | 40.0% | |
GAGAATTAGACTTAGGAAGG+AGG | + | chr5.4:58200918-58200937 | MS.gene26217:intron | 40.0% | |
TCAAGGTTGTTTAGTGCATC+AGG | - | chr5.4:58201045-58201064 | None:intergenic | 40.0% | |
TGTATTGTCCATACTTCAGG+TGG | + | chr5.4:58201706-58201725 | MS.gene26217:intron | 40.0% | |
TTACACGTTGGCGAATTGAT+TGG | + | chr5.4:58202029-58202048 | MS.gene26217:CDS | 40.0% | |
TTAGAGGAATGGGAATGACA+AGG | - | chr5.4:58201652-58201671 | None:intergenic | 40.0% | |
TTCATGGCAGTTTGATTGGT+TGG | + | chr5.4:58202410-58202429 | MS.gene26217:CDS | 40.0% | |
! | AGCAAGATACTGATTAAGGG+GGG | - | chr5.4:58200740-58200759 | None:intergenic | 40.0% |
! | CCTGTGTTTGTGTCAACTTT+TGG | - | chr5.4:58202124-58202143 | None:intergenic | 40.0% |
! | GAGCAAGATACTGATTAAGG+GGG | - | chr5.4:58200741-58200760 | None:intergenic | 40.0% |
! | TTGGGAAAAAGGTTTTCTGC+TGG | + | chr5.4:58201866-58201885 | MS.gene26217:intron | 40.0% |
!!! | GGGCTGCTTACCATATTTTT+TGG | + | chr5.4:58202176-58202195 | MS.gene26217:intron | 40.0% |
AATATCGGCACAAGATAGGC+TGG | + | chr5.4:58201678-58201697 | MS.gene26217:intron | 45.0% | |
AATGAGTGGAGAGGTTAGAC+CGG | + | chr5.4:58202265-58202284 | MS.gene26217:intron | 45.0% | |
ACATAGCAGCCAGCTTCTAA+AGG | + | chr5.4:58201319-58201338 | MS.gene26217:intron | 45.0% | |
ATAGATCCTCTGCGGCAAAA+AGG | - | chr5.4:58201074-58201093 | None:intergenic | 45.0% | |
ATTCTGCTCAATGAGTGGAG+AGG | + | chr5.4:58202256-58202275 | MS.gene26217:intron | 45.0% | |
CAACTACAACAGAGTAGGCA+TGG | - | chr5.4:58201003-58201022 | None:intergenic | 45.0% | |
CAAGTCAGTGAAGTCAGGAT+TGG | - | chr5.4:58200853-58200872 | None:intergenic | 45.0% | |
CATGTGTCTTAGTTCGCAGT+TGG | + | chr5.4:58201196-58201215 | MS.gene26217:intron | 45.0% | |
GACACTTTCCACCTGAAGTA+TGG | - | chr5.4:58201717-58201736 | None:intergenic | 45.0% | |
GCTATTGGCAAAAGACGTAC+CGG | + | chr5.4:58202456-58202475 | MS.gene26217:CDS | 45.0% | |
TTAAGGGAGGATTCCAACTG+TGG | + | chr5.4:58201381-58201400 | MS.gene26217:intron | 45.0% | |
! | TATTCTCCTTTTTGCCGCAG+AGG | + | chr5.4:58201065-58201084 | MS.gene26217:intron | 45.0% |
!! | GGAGAGGTATTTGAAAGCCA+CGG | + | chr5.4:58201410-58201429 | MS.gene26217:intron | 45.0% |
!! | GTGGAAAGTGTCATGCATGA+TGG | + | chr5.4:58201725-58201744 | MS.gene26217:intron | 45.0% |
!!! | TTTTTGGGTTGGTGTTGTGG+TGG | + | chr5.4:58202192-58202211 | MS.gene26217:intron | 45.0% |
!! | AAACATTTATATTAAATATT+AGG | - | chr5.4:58201928-58201947 | None:intergenic | 5.0% |
GCAGAAACTGCCTTGTGATG+TGG | + | chr5.4:58201432-58201451 | MS.gene26217:intron | 50.0% | |
GGAGGATTCCAACTGTGGTT+TGG | + | chr5.4:58201386-58201405 | MS.gene26217:intron | 50.0% | |
GTCAGTGAAGTCAGGATTGG+TGG | - | chr5.4:58200850-58200869 | None:intergenic | 50.0% | |
! | AGTGAAGTCAGGATTGGTGG+TGG | - | chr5.4:58200847-58200866 | None:intergenic | 50.0% |
! | GGATTCCAACTGTGGTTTGG+CGG | + | chr5.4:58201389-58201408 | MS.gene26217:intron | 50.0% |
! | GTGAAGTCAGGATTGGTGGT+GGG | - | chr5.4:58200846-58200865 | None:intergenic | 50.0% |
!! | TGAAGTCAGGATTGGTGGTG+GGG | - | chr5.4:58200845-58200864 | None:intergenic | 50.0% |
TCACAAGGCAGTTTCTGCCG+TGG | - | chr5.4:58201430-58201449 | None:intergenic | 55.0% | |
CCTCTCCGCCAAACCACAGT+TGG | - | chr5.4:58201397-58201416 | None:intergenic | 60.0% | |
! | CCAACTGTGGTTTGGCGGAG+AGG | + | chr5.4:58201394-58201413 | MS.gene26217:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 58200663 | 58202630 | 58200663 | ID=MS.gene26217 |
chr5.4 | mRNA | 58200663 | 58202630 | 58200663 | ID=MS.gene26217.t1;Parent=MS.gene26217 |
chr5.4 | exon | 58200663 | 58200714 | 58200663 | ID=MS.gene26217.t1.exon1;Parent=MS.gene26217.t1 |
chr5.4 | CDS | 58200663 | 58200714 | 58200663 | ID=cds.MS.gene26217.t1;Parent=MS.gene26217.t1 |
chr5.4 | exon | 58202024 | 58202142 | 58202024 | ID=MS.gene26217.t1.exon2;Parent=MS.gene26217.t1 |
chr5.4 | CDS | 58202024 | 58202142 | 58202024 | ID=cds.MS.gene26217.t1;Parent=MS.gene26217.t1 |
chr5.4 | exon | 58202372 | 58202524 | 58202372 | ID=MS.gene26217.t1.exon3;Parent=MS.gene26217.t1 |
chr5.4 | CDS | 58202372 | 58202524 | 58202372 | ID=cds.MS.gene26217.t1;Parent=MS.gene26217.t1 |
chr5.4 | exon | 58202601 | 58202630 | 58202601 | ID=MS.gene26217.t1.exon4;Parent=MS.gene26217.t1 |
chr5.4 | CDS | 58202601 | 58202630 | 58202601 | ID=cds.MS.gene26217.t1;Parent=MS.gene26217.t1 |
Gene Sequence |
Protein sequence |