AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26260.t1 MTR_5g075390 98.976 293 3 0 1 293 66 358 0.0 596
MS.gene26260.t1 MTR_3g467120 70.336 327 61 6 1 293 53 377 2.51e-156 441
MS.gene26260.t1 MTR_3g094020 54.745 274 109 5 26 293 47 311 1.57e-88 266
MS.gene26260.t1 MTR_2g099050 55.140 214 52 5 24 193 107 320 7.32e-60 196
MS.gene26260.t1 MTR_6g034945 60.571 175 55 6 35 203 95 261 1.42e-53 177
MS.gene26260.t1 MTR_4g072090 73.684 114 30 0 79 192 345 458 6.94e-49 169
MS.gene26260.t1 MTR_4g072090 76.042 96 23 0 79 174 345 440 1.75e-40 146
MS.gene26260.t1 MTR_1g023690 56.944 144 52 2 59 192 342 485 1.55e-31 123
MS.gene26260.t1 MTR_2g090900 39.869 153 79 4 94 243 191 333 1.41e-21 93.2
MS.gene26260.t1 MTR_2g090900 50.538 93 46 0 94 186 191 283 1.60e-21 92.8
MS.gene26260.t1 MTR_4g079500 48.387 93 48 0 94 186 194 286 1.78e-20 90.1
MS.gene26260.t1 MTR_1g099030 41.818 110 62 2 79 187 109 217 8.20e-16 76.3
MS.gene26260.t1 MTR_8g088650 40.426 94 51 1 93 186 233 321 1.23e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26260.t1 AT2G40620 52.493 341 91 11 3 293 48 367 2.82e-91 275
MS.gene26260.t1 AT1G06850 57.621 269 87 7 29 282 70 326 3.49e-88 266
MS.gene26260.t1 AT2G31370 51.092 229 70 5 24 212 94 320 5.39e-62 201
MS.gene26260.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene26260.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene26260.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene26260.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene26260.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene26260.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene26260.t1 AT1G06070 52.358 212 67 4 24 202 108 318 8.84e-57 188
MS.gene26260.t1 AT4G38900 67.626 139 35 2 63 191 353 491 1.51e-49 172
MS.gene26260.t1 AT4G38900 67.626 139 35 2 63 191 353 491 1.51e-49 172
MS.gene26260.t1 AT1G43700 61.538 156 46 4 51 192 137 292 1.71e-48 165
MS.gene26260.t1 AT4G38900 64.828 145 35 3 63 191 353 497 4.98e-47 166
MS.gene26260.t1 AT2G21230 69.027 113 35 0 79 191 355 467 3.54e-43 154
MS.gene26260.t1 AT2G21230 69.027 113 35 0 79 191 355 467 3.54e-43 154
MS.gene26260.t1 AT1G06850 62.963 135 35 3 29 149 70 203 1.20e-42 146
MS.gene26260.t1 AT2G21230 64.706 119 36 1 79 191 355 473 3.64e-40 147
MS.gene26260.t1 AT2G21230 71.875 96 27 0 79 174 355 450 6.02e-37 137
MS.gene26260.t1 AT3G58120 49.462 93 47 0 94 186 202 294 1.07e-21 93.6
MS.gene26260.t1 AT2G42380 48.936 94 48 0 93 186 185 278 1.65e-21 92.8
MS.gene26260.t1 AT2G12900 43.269 104 58 1 86 189 109 211 4.38e-21 90.5
MS.gene26260.t1 AT2G13150 41.748 103 59 1 86 188 142 243 4.46e-18 82.4
MS.gene26260.t1 AT2G12940 39.423 104 62 1 85 188 140 242 1.43e-17 81.3
MS.gene26260.t1 AT2G42380 46.988 83 44 0 93 175 185 267 2.37e-17 80.5
MS.gene26260.t1 AT3G58120 47.500 80 42 0 94 173 202 281 2.49e-16 77.8
MS.gene26260.t1 AT2G42380 43.617 94 42 1 93 186 185 267 8.36e-15 73.9
MS.gene26260.t1 AT2G21235 34.722 144 62 3 94 205 359 502 1.13e-14 74.3
MS.gene26260.t1 AT1G58110 42.353 85 49 0 103 187 238 322 3.58e-12 66.6
MS.gene26260.t1 AT1G58110 42.353 85 49 0 103 187 238 322 3.58e-12 66.6

Find 81 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATCCAGTTGCCACTATT+TGG 0.262115 5.4:+59072317 MS.gene26260:CDS
AGCTATGCCTCCTGATAAAT+TGG 0.296982 5.4:+59069538 MS.gene26260:CDS
GAGTTCGTTTGGGGAGATTA+TGG 0.335399 5.4:+59069505 MS.gene26260:CDS
ATTCCACCACAAGGTCCTTC+TGG 0.351170 5.4:+59072287 MS.gene26260:CDS
TTCTGAATATGAATGAGAAT+TGG 0.357804 5.4:-59072381 None:intergenic
TTGATGGTTCGAGTTCGTTT+GGG 0.357989 5.4:+59069495 MS.gene26260:CDS
GAAGGACCTTGTGGTGGAAT+TGG 0.359677 5.4:-59072284 None:intergenic
GTTGATGGTTCGAGTTCGTT+TGG 0.360714 5.4:+59069494 MS.gene26260:CDS
CAAAGCTCAGCCAATTTATC+AGG 0.368831 5.4:-59069548 None:intergenic
CGGCATAGTAATTCGGTTGA+TGG 0.370876 5.4:+59069479 MS.gene26260:CDS
CTGATAAATTGGCTGAGCTT+TGG 0.380438 5.4:+59069549 MS.gene26260:CDS
TGGAGATGGTGGAGCAGATC+CGG 0.389694 5.4:+59069412 MS.gene26260:CDS
TGATGAGATGGCATGCTAGA+TGG 0.419162 5.4:-59072347 None:intergenic
TTGATTCTGTAAATTGCATT+TGG 0.421076 5.4:-59072253 None:intergenic
ATAGTGGCAACTGGATGTTC+CGG 0.448057 5.4:-59072313 None:intergenic
GTTGATGATCCGCCGGTGAA+TGG 0.450476 5.4:-59069323 None:intergenic
CGATGAGGCGGAGAAGAATC+CGG 0.451256 5.4:+59069442 MS.gene26260:CDS
GAAAGAAGTTGAGAGATTGA+AGG 0.452522 5.4:+59072178 MS.gene26260:CDS
GTCCCTGAAAACGACCAATC+TGG 0.466033 5.4:-59072418 None:intergenic
GAGGCATCGGCATAGTAATT+CGG 0.477726 5.4:+59069472 MS.gene26260:CDS
TGCAGAAAGAGAAGGATCTT+CGG 0.478143 5.4:-59072477 None:intergenic
TCGTTTGGGGAGATTATGGA+TGG 0.478452 5.4:+59069509 MS.gene26260:CDS
GTTGCTCCATGGCTTGCAGA+CGG 0.483654 5.4:-59071956 None:intergenic
AGTGACCAAATAGTGGCAAC+TGG 0.487180 5.4:-59072322 None:intergenic
AATATGAATGAGAATTGGTT+TGG 0.494880 5.4:-59072376 None:intergenic
GAGAGATTGAAGGTTGCTAC+TGG 0.498616 5.4:+59072188 MS.gene26260:CDS
TTATTGTAGCGAGACACAAC+AGG 0.501264 5.4:+59071903 MS.gene26260:intron
AGAAGAATCCGGTGAGGTCG+AGG 0.509126 5.4:+59069453 MS.gene26260:CDS
ATCCGGTGAGGTCGAGGCAT+CGG 0.510001 5.4:+59069459 MS.gene26260:CDS
TGCCCAACTGACACTATACC+AGG 0.512274 5.4:+59071490 MS.gene26260:CDS
TGCTCGTTCAAAAGAGAGAA+AGG 0.513956 5.4:+59071403 MS.gene26260:CDS
GAGTTGTAGCTTCAGTCTGT+AGG 0.522836 5.4:-59071463 None:intergenic
CACAAGGTCCTTCTGGTCAC+CGG 0.525022 5.4:+59072294 MS.gene26260:CDS
TTCTAGTTCATGTATATAGC+GGG 0.529677 5.4:-59071426 None:intergenic
GCCGGTGAATGGATCGGAAG+GGG 0.535786 5.4:-59069312 None:intergenic
GATGGGGAGTGACCAAATAG+TGG 0.537737 5.4:-59072329 None:intergenic
TGAATGGATCGGAAGGGGAG+AGG 0.537969 5.4:-59069307 None:intergenic
TCCCCTTCCGATCCATTCAC+CGG 0.539027 5.4:+59069311 MS.gene26260:CDS
GAGATGTGCTTGTTGCTCCA+TGG 0.539738 5.4:-59071967 None:intergenic
TACATTGACATGGATAAGCT+TGG 0.540603 5.4:+59069392 MS.gene26260:CDS
AACCTGGTATAGTGTCAGTT+GGG 0.543208 5.4:-59071492 None:intergenic
GATGAGATGGCATGCTAGAT+GGG 0.545329 5.4:-59072346 None:intergenic
CCGCCGGTGAATGGATCGGA+AGG 0.545671 5.4:-59069314 None:intergenic
GGAGATGGTGGAGCAGATCC+GGG 0.548529 5.4:+59069413 MS.gene26260:CDS
TTATTACAAAATGACCAGAT+TGG 0.549243 5.4:+59072404 MS.gene26260:CDS
CTTTCACTTGCAGAAAGAGA+AGG 0.554279 5.4:-59072485 None:intergenic
AGTTGTAGCTTCAGTCTGTA+GGG 0.555319 5.4:-59071462 None:intergenic
AAACCTGGTATAGTGTCAGT+TGG 0.558403 5.4:-59071493 None:intergenic
TAAGCTCCGTCTGCAAGCCA+TGG 0.558627 5.4:+59071950 MS.gene26260:CDS
GTTTGGTGCAGTTGATGAGA+TGG 0.569320 5.4:-59072359 None:intergenic
TTGATCCTAAGCGTGCCAAA+AGG 0.570345 5.4:+59069576 MS.gene26260:CDS
TGATCCGCCGGTGAATGGAT+CGG 0.573063 5.4:-59069318 None:intergenic
ATGGATAAGCTTGGAGATGG+TGG 0.575379 5.4:+59069401 MS.gene26260:CDS
ACGGCGAGCCTCGATGAGAT+CGG 0.578645 5.4:+59069344 MS.gene26260:CDS
ATTCACCGGCGGATCATCAA+CGG 0.584726 5.4:+59069325 MS.gene26260:CDS
TCCGCCTCATCGTTTCCACC+CGG 0.585072 5.4:-59069431 None:intergenic
TGCCGATGCCTCGACCTCAC+CGG 0.585516 5.4:-59069461 None:intergenic
TGATGGTTCGAGTTCGTTTG+GGG 0.591937 5.4:+59069496 MS.gene26260:CDS
GGACTTGACATTAGTAGCAA+AGG 0.593896 5.4:+59072437 MS.gene26260:CDS
TGGATGTTCCGGTGACCAGA+AGG 0.596869 5.4:-59072302 None:intergenic
GCTCGCCGTTGATGATCCGC+CGG 0.602248 5.4:-59069330 None:intergenic
GTTCTAGTTCATGTATATAG+CGG 0.607918 5.4:-59071427 None:intergenic
CGTTTGGGGAGATTATGGAT+GGG 0.615032 5.4:+59069510 MS.gene26260:CDS
AGCTCAGCCAATTTATCAGG+AGG 0.617494 5.4:-59069545 None:intergenic
CAACAAGCACATCTCCGTGA+TGG 0.633902 5.4:+59071975 MS.gene26260:CDS
TCCGGGTGGAAACGATGAGG+CGG 0.636862 5.4:+59069430 MS.gene26260:CDS
GGTGATAATTGTTACCATCA+CGG 0.643305 5.4:-59071989 None:intergenic
GACATGGATAAGCTTGGAGA+TGG 0.645716 5.4:+59069398 MS.gene26260:CDS
CGGTGACCAGAAGGACCTTG+TGG 0.645804 5.4:-59072293 None:intergenic
GTTCTCGACGTACATTGACA+TGG 0.649912 5.4:+59069382 MS.gene26260:CDS
CGCCGGTGAATGGATCGGAA+GGG 0.655187 5.4:-59069313 None:intergenic
TGACCAGAAGGACCTTGTGG+TGG 0.657394 5.4:-59072290 None:intergenic
CTTCCGATCCGATCTCATCG+AGG 0.668290 5.4:-59069352 None:intergenic
GAGCCTCGATGAGATCGGAT+CGG 0.671558 5.4:+59069349 MS.gene26260:CDS
GATGGTGGAGCAGATCCGGG+TGG 0.680229 5.4:+59069416 MS.gene26260:CDS
TACGCTCCAATTCCACCACA+AGG 0.681715 5.4:+59072278 MS.gene26260:CDS
ATGAGATGGCATGCTAGATG+GGG 0.693250 5.4:-59072345 None:intergenic
AGATCCGGGTGGAAACGATG+AGG 0.696064 5.4:+59069427 MS.gene26260:CDS
CAAGATTAAAAGATTCAGTG+TGG 0.696933 5.4:-59072223 None:intergenic
CCTTCCGATCCATTCACCGG+CGG 0.698144 5.4:+59069314 MS.gene26260:CDS
AGGCGGAGAAGAATCCGGTG+AGG 0.721189 5.4:+59069447 MS.gene26260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTATTAATTT+AGG + chr5.4:59070638-59070657 MS.gene26260:intron 0.0%
!!! TTTTTTTTTTTATTAATTTA+GGG + chr5.4:59070639-59070658 MS.gene26260:intron 0.0%
!!! AGTTTTTTTTTTATTAGTTT+AGG + chr5.4:59069733-59069752 MS.gene26260:intron 10.0%
!!! GTTTTTTTTTTATTAGTTTA+GGG + chr5.4:59069734-59069753 MS.gene26260:intron 10.0%
!!! TTAATTTTTTTTATAGTGAT+GGG + chr5.4:59070891-59070910 MS.gene26260:intron 10.0%
!!! TTTAATTTTTTTTATAGTGA+TGG + chr5.4:59070890-59070909 MS.gene26260:intron 10.0%
!!! TTTTTTTTTTATTAGTTTAG+GGG + chr5.4:59069735-59069754 MS.gene26260:intron 10.0%
!!! ATCAACATCTAATATTTTTT+TGG - chr5.4:59070207-59070226 None:intergenic 15.0%
!!! ATTATTTTAATAAGCTATCT+TGG + chr5.4:59069935-59069954 MS.gene26260:intron 15.0%
!!! TCTAGAAGATTTTATATAAA+AGG - chr5.4:59071725-59071744 None:intergenic 15.0%
!! AACCTAATTCTGTTTATAAT+TGG - chr5.4:59070408-59070427 None:intergenic 20.0%
!! AGTTAAAAAATTCAGCAATT+GGG - chr5.4:59070566-59070585 None:intergenic 20.0%
!! ATATGTGTTTGTGTATTTAT+TGG - chr5.4:59071104-59071123 None:intergenic 20.0%
!! TACTATACATATATTCACTT+CGG + chr5.4:59071749-59071768 MS.gene26260:intron 20.0%
!! TTATGCAAAAAGATTCTTAA+TGG - chr5.4:59070973-59070992 None:intergenic 20.0%
!! TTCCAATTATAAACAGAATT+AGG + chr5.4:59070403-59070422 MS.gene26260:intron 20.0%
!!! AGTAACTTTGTTTTGTTTAT+TGG + chr5.4:59071566-59071585 MS.gene26260:intron 20.0%
!!! ATAATTTTGAAGCTCAAATA+TGG + chr5.4:59071026-59071045 MS.gene26260:intron 20.0%
!!! ATATATTTGTTAGTGTATCT+TGG + chr5.4:59071120-59071139 MS.gene26260:intron 20.0%
!!! CTTCTTAGATTTAAACTTTT+GGG + chr5.4:59071218-59071237 MS.gene26260:intron 20.0%
!!! GTTTTGTTTATTGGATTTAT+TGG + chr5.4:59071575-59071594 MS.gene26260:intron 20.0%
!!! TTCTTAGATTTAAACTTTTG+GGG + chr5.4:59071219-59071238 MS.gene26260:intron 20.0%
!!! TTTTTAACGTATTGTAAGAA+AGG - chr5.4:59072013-59072032 None:intergenic 20.0%
! AATATGAATGAGAATTGGTT+TGG - chr5.4:59072379-59072398 None:intergenic 25.0%
! ACAAATAATCAAGAAGTGAT+TGG - chr5.4:59071879-59071898 None:intergenic 25.0%
! CAAATAATCAAGAAGTGATT+GGG - chr5.4:59071878-59071897 None:intergenic 25.0%
! CAGTTAAAAAATTCAGCAAT+TGG - chr5.4:59070567-59070586 None:intergenic 25.0%
! GCTTCAAAATTATATGTTGA+TGG - chr5.4:59071019-59071038 None:intergenic 25.0%
! TTATTACAAAATGACCAGAT+TGG + chr5.4:59072404-59072423 MS.gene26260:CDS 25.0%
! TTCAATTGTACTAATTGTTG+TGG + chr5.4:59071312-59071331 MS.gene26260:intron 25.0%
! TTCTGAATATGAATGAGAAT+TGG - chr5.4:59072384-59072403 None:intergenic 25.0%
! TTGAAGTTAATTAACTCAAC+TGG + chr5.4:59072082-59072101 MS.gene26260:intron 25.0%
! TTGATTCTGTAAATTGCATT+TGG - chr5.4:59072256-59072275 None:intergenic 25.0%
! TTGTACTTTATGATTAGAGA+TGG + chr5.4:59070947-59070966 MS.gene26260:intron 25.0%
! TTTCCTCATACTTAAATTTG+TGG + chr5.4:59071843-59071862 MS.gene26260:intron 25.0%
!! AACTCAAAATGTTTTCTTCT+TGG - chr5.4:59070444-59070463 None:intergenic 25.0%
!! ACAATCTAGAATCACATAAT+AGG - chr5.4:59070812-59070831 None:intergenic 25.0%
!! CAATCTAGAATCACATAATA+GGG - chr5.4:59070811-59070830 None:intergenic 25.0%
!! CAATGATGAGTATTTTTCTA+TGG + chr5.4:59069671-59069690 MS.gene26260:intron 25.0%
!! GCTTCTTAGATTTAAACTTT+TGG + chr5.4:59071217-59071236 MS.gene26260:intron 25.0%
!! TCTTAGATTTAAACTTTTGG+GGG + chr5.4:59071220-59071239 MS.gene26260:intron 25.0%
!! TGTAGCTAAAAAATGACTTT+TGG + chr5.4:59071668-59071687 MS.gene26260:intron 25.0%
!! TTTTAATAAGCTATCTTGGA+TGG + chr5.4:59069939-59069958 MS.gene26260:intron 25.0%
!!! AGAAGAAAACATTTTGAGTT+AGG + chr5.4:59070444-59070463 MS.gene26260:intron 25.0%
!!! AGTCATTTTTTAGCTACAAT+TGG - chr5.4:59071666-59071685 None:intergenic 25.0%
!!! GAAGAAAACATTTTGAGTTA+GGG + chr5.4:59070445-59070464 MS.gene26260:intron 25.0%
!!! GTCTTTTAATTAACTCAACT+GGG + chr5.4:59072114-59072133 MS.gene26260:intron 25.0%
!!! TGGTTTGAGTTTTTGTTAAT+TGG + chr5.4:59069691-59069710 MS.gene26260:intron 25.0%
!!! TGTCTTTTAATTAACTCAAC+TGG + chr5.4:59072113-59072132 MS.gene26260:intron 25.0%
!!! TTTTCAGTTTAGTTTTTGTG+TGG + chr5.4:59070717-59070736 MS.gene26260:intron 25.0%
ACAATTGGAACAAGGAAATA+TGG - chr5.4:59071651-59071670 None:intergenic 30.0%
ATATATTCACTTCGGTGATT+TGG + chr5.4:59071757-59071776 MS.gene26260:intron 30.0%
ATGCTAGATTTAAACAGTTG+AGG - chr5.4:59070319-59070338 None:intergenic 30.0%
ATTCGTAGAACTTACAAAGT+TGG - chr5.4:59070843-59070862 None:intergenic 30.0%
CAAGATTAAAAGATTCAGTG+TGG - chr5.4:59072226-59072245 None:intergenic 30.0%
GAACAAGAATTGTTCAAAAC+AGG - chr5.4:59070115-59070134 None:intergenic 30.0%
GAACTTATGAAAAGAGCTTA+TGG + chr5.4:59069889-59069908 MS.gene26260:intron 30.0%
GCTCAAATATGGAAAAACAT+TGG + chr5.4:59071037-59071056 MS.gene26260:intron 30.0%
GTTAAAATGAAGCGAAATTG+AGG + chr5.4:59069768-59069787 MS.gene26260:intron 30.0%
TAGCCACAAATTTAAGTATG+AGG - chr5.4:59071849-59071868 None:intergenic 30.0%
TATATTCACTTCGGTGATTT+GGG + chr5.4:59071758-59071777 MS.gene26260:intron 30.0%
TGCTAGATTTAAACAGTTGA+GGG - chr5.4:59070318-59070337 None:intergenic 30.0%
! AAAAACATTGGTGTTTGACT+TGG + chr5.4:59071049-59071068 MS.gene26260:intron 30.0%
! CACACTGAATCTTTTAATCT+TGG + chr5.4:59072224-59072243 MS.gene26260:CDS 30.0%
! GATCAAAATTACGAACCTTT+TGG - chr5.4:59069594-59069613 None:intergenic 30.0%
! TAATTGATTTAGACCCTGTT+TGG - chr5.4:59070082-59070101 None:intergenic 30.0%
! TTCCAAGACCAATTTTACAT+GGG - chr5.4:59070377-59070396 None:intergenic 30.0%
! TTTCCAAGACCAATTTTACA+TGG - chr5.4:59070378-59070397 None:intergenic 30.0%
!! AATGTTGCTTTGTTTGTGAA+TGG + chr5.4:59071798-59071817 MS.gene26260:intron 30.0%
!! GTTCTAGTTCATGTATATAG+CGG - chr5.4:59071430-59071449 None:intergenic 30.0%
!! TTCAAGTTTTACTAACCTTC+CGG + chr5.4:59070132-59070151 MS.gene26260:intron 30.0%
!! TTCTAGTTCATGTATATAGC+GGG - chr5.4:59071429-59071448 None:intergenic 30.0%
!! TTTTAGCTACAATTGGAACA+AGG - chr5.4:59071659-59071678 None:intergenic 30.0%
AACATACCCTTATCACAACT+CGG - chr5.4:59069827-59069846 None:intergenic 35.0%
AATAAGCTCCTTATCCAAAC+AGG + chr5.4:59070065-59070084 MS.gene26260:intron 35.0%
AGAAATAGGAGTGGTCAAAA+TGG - chr5.4:59070273-59070292 None:intergenic 35.0%
ATAAGCTCCTTATCCAAACA+GGG + chr5.4:59070066-59070085 MS.gene26260:intron 35.0%
ATTATTTGACTGGGATGAGT+TGG + chr5.4:59070767-59070786 MS.gene26260:intron 35.0%
ATTTAGACCCTGTTTGGATA+AGG - chr5.4:59070076-59070095 None:intergenic 35.0%
GAAAGAAGTTGAGAGATTGA+AGG + chr5.4:59072178-59072197 MS.gene26260:CDS 35.0%
GATAAATGTCAACACAAACC+TGG - chr5.4:59071511-59071530 None:intergenic 35.0%
GGTGATAATTGTTACCATCA+CGG - chr5.4:59071992-59072011 None:intergenic 35.0%
GTAAGTTCTACGAATAACTG+AGG + chr5.4:59070848-59070867 MS.gene26260:intron 35.0%
TAAGTTTCGTGAGACTATCT+AGG + chr5.4:59069865-59069884 MS.gene26260:intron 35.0%
TACATTGACATGGATAAGCT+TGG + chr5.4:59069392-59069411 MS.gene26260:CDS 35.0%
TCGTATCACCCATGTAAAAT+TGG + chr5.4:59070366-59070385 MS.gene26260:intron 35.0%
TTTACTCCCATCACAGAAAT+AGG - chr5.4:59070287-59070306 None:intergenic 35.0%
! AGTTGTGATAAGGGTATGTT+TGG + chr5.4:59069827-59069846 MS.gene26260:intron 35.0%
! TTTGTTGTGTGTTCAATCTG+TGG + chr5.4:59069791-59069810 MS.gene26260:intron 35.0%
!! AAGTTTGTTGTTTGTGCTTG+TGG + chr5.4:59070687-59070706 MS.gene26260:intron 35.0%
!! TAGATTTAAACTTTTGGGGG+TGG + chr5.4:59071223-59071242 MS.gene26260:intron 35.0%
!!! ACATTTTGAGTTAGGGAACT+AGG + chr5.4:59070452-59070471 MS.gene26260:intron 35.0%
!!! TTTTTTTGGCATTAACCCTC+CGG - chr5.4:59070193-59070212 None:intergenic 35.0%
AAACCTGGTATAGTGTCAGT+TGG - chr5.4:59071496-59071515 None:intergenic 40.0%
AACATCCAGTTGCCACTATT+TGG + chr5.4:59072317-59072336 MS.gene26260:CDS 40.0%
AACCTGGTATAGTGTCAGTT+GGG - chr5.4:59071495-59071514 None:intergenic 40.0%
ACTCGTCGCAATTATTTGAC+TGG + chr5.4:59070757-59070776 MS.gene26260:intron 40.0%
AGCTATGCCTCCTGATAAAT+TGG + chr5.4:59069538-59069557 MS.gene26260:CDS 40.0%
AGTTGTAGCTTCAGTCTGTA+GGG - chr5.4:59071465-59071484 None:intergenic 40.0%
CAAAGCTCAGCCAATTTATC+AGG - chr5.4:59069551-59069570 None:intergenic 40.0%
CACACTTCAAAAGTTTGAGC+AGG - chr5.4:59072059-59072078 None:intergenic 40.0%
CAGATGCATGACAGAATTAG+GGG - chr5.4:59070516-59070535 None:intergenic 40.0%
CCAGATGCATGACAGAATTA+GGG - chr5.4:59070517-59070536 None:intergenic 40.0%
CCATGTTGTTCTATGTAGCT+GGG + chr5.4:59071195-59071214 MS.gene26260:intron 40.0%
CTCGAGGAAAATGATGAACA+AGG - chr5.4:59071628-59071647 None:intergenic 40.0%
CTCGTCGCAATTATTTGACT+GGG + chr5.4:59070758-59070777 MS.gene26260:intron 40.0%
CTGATAAATTGGCTGAGCTT+TGG + chr5.4:59069549-59069568 MS.gene26260:CDS 40.0%
CTTTCACTTGCAGAAAGAGA+AGG - chr5.4:59072488-59072507 None:intergenic 40.0%
GGACTTGACATTAGTAGCAA+AGG + chr5.4:59072437-59072456 MS.gene26260:CDS 40.0%
TCCATGTTGTTCTATGTAGC+TGG + chr5.4:59071194-59071213 MS.gene26260:intron 40.0%
TGCAGAAAGAGAAGGATCTT+CGG - chr5.4:59072480-59072499 None:intergenic 40.0%
TGCTCGTTCAAAAGAGAGAA+AGG + chr5.4:59071403-59071422 MS.gene26260:CDS 40.0%
TTATTGTAGCGAGACACAAC+AGG + chr5.4:59071903-59071922 MS.gene26260:intron 40.0%
TTCTCTCCGAGTTGTGATAA+GGG + chr5.4:59069818-59069837 MS.gene26260:intron 40.0%
! CACCCATGTAAAATTGGTCT+TGG + chr5.4:59070372-59070391 MS.gene26260:intron 40.0%
! TTGATGGTTCGAGTTCGTTT+GGG + chr5.4:59069495-59069514 MS.gene26260:CDS 40.0%
!! ACCACTCCTATTTCTGTGAT+GGG + chr5.4:59070278-59070297 MS.gene26260:intron 40.0%
!! ATTTAAACTTTTGGGGGTGG+AGG + chr5.4:59071226-59071245 MS.gene26260:intron 40.0%
AGAGGCCTGTAATCCAGATT+CGG - chr5.4:59070158-59070177 None:intergenic 45.0%
AGCTCAGCCAATTTATCAGG+AGG - chr5.4:59069548-59069567 None:intergenic 45.0%
AGTGACCAAATAGTGGCAAC+TGG - chr5.4:59072325-59072344 None:intergenic 45.0%
ATAGTGGCAACTGGATGTTC+CGG - chr5.4:59072316-59072335 None:intergenic 45.0%
ATGAGATGGCATGCTAGATG+GGG - chr5.4:59072348-59072367 None:intergenic 45.0%
ATGGATAAGCTTGGAGATGG+TGG + chr5.4:59069401-59069420 MS.gene26260:CDS 45.0%
CCCAGCTACATAGAACAACA+TGG - chr5.4:59071198-59071217 None:intergenic 45.0%
CCCTAATTCTGTCATGCATC+TGG + chr5.4:59070514-59070533 MS.gene26260:intron 45.0%
CGGCATAGTAATTCGGTTGA+TGG + chr5.4:59069479-59069498 MS.gene26260:CDS 45.0%
CGTTTGGGGAGATTATGGAT+GGG + chr5.4:59069510-59069529 MS.gene26260:CDS 45.0%
CTTATCACAACTCGGAGAGA+AGG - chr5.4:59069819-59069838 None:intergenic 45.0%
CTTCTCTCCGAGTTGTGATA+AGG + chr5.4:59069817-59069836 MS.gene26260:intron 45.0%
GAACAAGGAAATATGGCTCG+AGG - chr5.4:59071644-59071663 None:intergenic 45.0%
GACATGGATAAGCTTGGAGA+TGG + chr5.4:59069398-59069417 MS.gene26260:CDS 45.0%
GAGAGATTGAAGGTTGCTAC+TGG + chr5.4:59072188-59072207 MS.gene26260:CDS 45.0%
GAGTTCGTTTGGGGAGATTA+TGG + chr5.4:59069505-59069524 MS.gene26260:CDS 45.0%
GAGTTGTAGCTTCAGTCTGT+AGG - chr5.4:59071466-59071485 None:intergenic 45.0%
GATGAGATGGCATGCTAGAT+GGG - chr5.4:59072349-59072368 None:intergenic 45.0%
GCATCTGGCTACATGTTCAA+TGG + chr5.4:59070529-59070548 MS.gene26260:intron 45.0%
GCCAGATGCATGACAGAATT+AGG - chr5.4:59070518-59070537 None:intergenic 45.0%
GTGGAGGATAATGTGAGAGT+GGG + chr5.4:59071242-59071261 MS.gene26260:intron 45.0%
GTTCTCGACGTACATTGACA+TGG + chr5.4:59069382-59069401 MS.gene26260:CDS 45.0%
TCCCATCACAGAAATAGGAG+TGG - chr5.4:59070282-59070301 None:intergenic 45.0%
TCGTTTGGGGAGATTATGGA+TGG + chr5.4:59069509-59069528 MS.gene26260:CDS 45.0%
TGATGAGATGGCATGCTAGA+TGG - chr5.4:59072350-59072369 None:intergenic 45.0%
TGGAGGATAATGTGAGAGTG+GGG + chr5.4:59071243-59071262 MS.gene26260:intron 45.0%
TTGATCCTAAGCGTGCCAAA+AGG + chr5.4:59069576-59069595 MS.gene26260:CDS 45.0%
! GGGGAACTAGTTCTCAATGA+AGG - chr5.4:59070497-59070516 None:intergenic 45.0%
! TGATGGTTCGAGTTCGTTTG+GGG + chr5.4:59069496-59069515 MS.gene26260:CDS 45.0%
!! GACCACTCCTATTTCTGTGA+TGG + chr5.4:59070277-59070296 MS.gene26260:intron 45.0%
!! GACCAGATTGGTCGTTTTCA+GGG + chr5.4:59072416-59072435 MS.gene26260:CDS 45.0%
!! GAGGCATCGGCATAGTAATT+CGG + chr5.4:59069472-59069491 MS.gene26260:CDS 45.0%
!! GTTGATGGTTCGAGTTCGTT+TGG + chr5.4:59069494-59069513 MS.gene26260:CDS 45.0%
!! GTTTGGTGCAGTTGATGAGA+TGG - chr5.4:59072362-59072381 None:intergenic 45.0%
!! TGACCAGATTGGTCGTTTTC+AGG + chr5.4:59072415-59072434 MS.gene26260:CDS 45.0%
ATTCACCGGCGGATCATCAA+CGG + chr5.4:59069325-59069344 MS.gene26260:CDS 50.0%
ATTCCACCACAAGGTCCTTC+TGG + chr5.4:59072287-59072306 MS.gene26260:CDS 50.0%
CAACAAGCACATCTCCGTGA+TGG + chr5.4:59071975-59071994 MS.gene26260:CDS 50.0%
GATGGGGAGTGACCAAATAG+TGG - chr5.4:59072332-59072351 None:intergenic 50.0%
GGTGGAGGATAATGTGAGAG+TGG + chr5.4:59071241-59071260 MS.gene26260:intron 50.0%
GTCCCTGAAAACGACCAATC+TGG - chr5.4:59072421-59072440 None:intergenic 50.0%
GTGGTCAAAATGGCTGCTAG+TGG - chr5.4:59070263-59070282 None:intergenic 50.0%
TACGCTCCAATTCCACCACA+AGG + chr5.4:59072278-59072297 MS.gene26260:CDS 50.0%
TGCCCAACTGACACTATACC+AGG + chr5.4:59071490-59071509 MS.gene26260:CDS 50.0%
! ACGAACCTTTTGGCACGCTT+AGG - chr5.4:59069584-59069603 None:intergenic 50.0%
! GAAGGACCTTGTGGTGGAAT+TGG - chr5.4:59072287-59072306 None:intergenic 50.0%
! GAGATGTGCTTGTTGCTCCA+TGG - chr5.4:59071970-59071989 None:intergenic 50.0%
ACTAACCTTCCGGCCGAATC+TGG + chr5.4:59070142-59070161 MS.gene26260:intron 55.0%
AGAAGAATCCGGTGAGGTCG+AGG + chr5.4:59069453-59069472 MS.gene26260:CDS 55.0%
AGATCCGGGTGGAAACGATG+AGG + chr5.4:59069427-59069446 MS.gene26260:CDS 55.0%
ATTAACCCTCCGGCTCTTGG+GGG - chr5.4:59070183-59070202 None:intergenic 55.0%
CACAAGGTCCTTCTGGTCAC+CGG + chr5.4:59072294-59072313 MS.gene26260:CDS 55.0%
CATTAACCCTCCGGCTCTTG+GGG - chr5.4:59070184-59070203 None:intergenic 55.0%
CGATGAGGCGGAGAAGAATC+CGG + chr5.4:59069442-59069461 MS.gene26260:CDS 55.0%
CTTCCGATCCGATCTCATCG+AGG - chr5.4:59069355-59069374 None:intergenic 55.0%
GAGCCTCGATGAGATCGGAT+CGG + chr5.4:59069349-59069368 MS.gene26260:CDS 55.0%
GCATTAACCCTCCGGCTCTT+GGG - chr5.4:59070185-59070204 None:intergenic 55.0%
GCCTGTAATCCAGATTCGGC+CGG - chr5.4:59070154-59070173 None:intergenic 55.0%
GTAATCCAGATTCGGCCGGA+AGG - chr5.4:59070150-59070169 None:intergenic 55.0%
TAAGCTCCGTCTGCAAGCCA+TGG + chr5.4:59071950-59071969 MS.gene26260:CDS 55.0%
TCCCCTTCCGATCCATTCAC+CGG + chr5.4:59069311-59069330 MS.gene26260:CDS 55.0%
TCCGGCCGAATCTGGATTAC+AGG + chr5.4:59070150-59070169 MS.gene26260:intron 55.0%
TGAATGGATCGGAAGGGGAG+AGG - chr5.4:59069310-59069329 None:intergenic 55.0%
TGACCAGAAGGACCTTGTGG+TGG - chr5.4:59072293-59072312 None:intergenic 55.0%
TGATCCGCCGGTGAATGGAT+CGG - chr5.4:59069321-59069340 None:intergenic 55.0%
TGGATGTTCCGGTGACCAGA+AGG - chr5.4:59072305-59072324 None:intergenic 55.0%
! GTTGCTCCATGGCTTGCAGA+CGG - chr5.4:59071959-59071978 None:intergenic 55.0%
!! GTTGATGATCCGCCGGTGAA+TGG - chr5.4:59069326-59069345 None:intergenic 55.0%
!! TGGAGATGGTGGAGCAGATC+CGG + chr5.4:59069412-59069431 MS.gene26260:CDS 55.0%
ACGGCGAGCCTCGATGAGAT+CGG + chr5.4:59069344-59069363 MS.gene26260:CDS 60.0%
AGGCGGAGAAGAATCCGGTG+AGG + chr5.4:59069447-59069466 MS.gene26260:CDS 60.0%
ATCCGGTGAGGTCGAGGCAT+CGG + chr5.4:59069459-59069478 MS.gene26260:CDS 60.0%
CCTTCCGATCCATTCACCGG+CGG + chr5.4:59069314-59069333 MS.gene26260:CDS 60.0%
CGCCGGTGAATGGATCGGAA+GGG - chr5.4:59069316-59069335 None:intergenic 60.0%
CGGTGACCAGAAGGACCTTG+TGG - chr5.4:59072296-59072315 None:intergenic 60.0%
GCCGGTGAATGGATCGGAAG+GGG - chr5.4:59069315-59069334 None:intergenic 60.0%
GGCATTAACCCTCCGGCTCT+TGG - chr5.4:59070186-59070205 None:intergenic 60.0%
TCCGCCTCATCGTTTCCACC+CGG - chr5.4:59069434-59069453 None:intergenic 60.0%
TCCGGGTGGAAACGATGAGG+CGG + chr5.4:59069430-59069449 MS.gene26260:CDS 60.0%
TCTTTCCCCCAAGAGCCGGA+GGG + chr5.4:59070175-59070194 MS.gene26260:intron 60.0%
!! GGAGATGGTGGAGCAGATCC+GGG + chr5.4:59069413-59069432 MS.gene26260:CDS 60.0%
CCGCCGGTGAATGGATCGGA+AGG - chr5.4:59069317-59069336 None:intergenic 65.0%
CTCCGGCTCTTGGGGGAAAG+AGG - chr5.4:59070176-59070195 None:intergenic 65.0%
CTCTTTCCCCCAAGAGCCGG+AGG + chr5.4:59070174-59070193 MS.gene26260:intron 65.0%
GGCCTCTTTCCCCCAAGAGC+CGG + chr5.4:59070171-59070190 MS.gene26260:intron 65.0%
TGCCGATGCCTCGACCTCAC+CGG - chr5.4:59069464-59069483 None:intergenic 65.0%
!! GATGGTGGAGCAGATCCGGG+TGG + chr5.4:59069416-59069435 MS.gene26260:CDS 65.0%
!! GCTCGCCGTTGATGATCCGC+CGG - chr5.4:59069333-59069352 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 59069299 59072523 59069299 ID=MS.gene26260
chr5.4 mRNA 59069299 59072523 59069299 ID=MS.gene26260.t1;Parent=MS.gene26260
chr5.4 exon 59069299 59069597 59069299 ID=MS.gene26260.t1.exon1;Parent=MS.gene26260.t1
chr5.4 CDS 59069299 59069597 59069299 ID=cds.MS.gene26260.t1;Parent=MS.gene26260.t1
chr5.4 exon 59071379 59071511 59071379 ID=MS.gene26260.t1.exon2;Parent=MS.gene26260.t1
chr5.4 CDS 59071379 59071511 59071379 ID=cds.MS.gene26260.t1;Parent=MS.gene26260.t1
chr5.4 exon 59071912 59071996 59071912 ID=MS.gene26260.t1.exon3;Parent=MS.gene26260.t1
chr5.4 CDS 59071912 59071996 59071912 ID=cds.MS.gene26260.t1;Parent=MS.gene26260.t1
chr5.4 exon 59072159 59072523 59072159 ID=MS.gene26260.t1.exon4;Parent=MS.gene26260.t1
chr5.4 CDS 59072159 59072523 59072159 ID=cds.MS.gene26260.t1;Parent=MS.gene26260.t1
Gene Sequence

>MS.gene26260

ATGATGGACCTCTCCCCTTCCGATCCATTCACCGGCGGATCATCAACGGCGAGCCTCGATGAGATCGGATCGGAAGATGACTTGTTCTCGACGTACATTGACATGGATAAGCTTGGAGATGGTGGAGCAGATCCGGGTGGAAACGATGAGGCGGAGAAGAATCCGGTGAGGTCGAGGCATCGGCATAGTAATTCGGTTGATGGTTCGAGTTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGTCTGTTGATCCTAAGCGTGCCAAAAGGTTCGTAATTTTGATCTGATCGCGAAATAATGATTTTTTTCTACTTCAATTGTGTGTAGATTAGTTAATTTTTCAATGATGAGTATTTTTCTATGGTTTGAGTTTTTGTTAATTGGTTTTCAAGTTCTAAATTGAAGTTTTTTTTTTATTAGTTTAGGGGATTTAAAATAGTTAAAATGAAGCGAAATTGAGGTTTGTTGTGTGTTCAATCTGTGGAACCTTCTCTCCGAGTTGTGATAAGGGTATGTTTGGATTGACTTACTTGAATAAGTTTCGTGAGACTATCTAGGAGAACTTATGAAAAGAGCTTATGGCATTTTTCATGAGCTTTTTTCAGATTATTTTAATAAGCTATCTTGGATGGCTTATGAAAACAGCTTATAGCATATACAAAAACAATTTAACTTTATTTTATCTTTTACTATTGATATAACTTATCATGATAAGAACTTGTGCTATAAGCTGCAAATAAGCTCCTTATCCAAACAGGGTCTAAATCAATTAGATGTTTTGTCCTGTTTTGAACAATTCTTGTTCAAGTTTTACTAACCTTCCGGCCGAATCTGGATTACAGGCCTCTTTCCCCCAAGAGCCGGAGGGTTAATGCCAAAAAAATATTAGATGTTGATTGACTAGTTTTCTTTCTAATGTGATATTCAAGTCCACTAGCAGCCATTTTGACCACTCCTATTTCTGTGATGGGAGTAAAACACTTAACCCTCAACTGTTTAAATCTAGCATGATAATCATCGACAGTTAGAGTGACTCTCGTATCACCCATGTAAAATTGGTCTTGGAAATTTCTTTCCAATTATAAACAGAATTAGGTTTTAACATTGAAAGCCAAGAAGAAAACATTTTGAGTTAGGGAACTAGGAAAATGTTTCATTTTCAAGCCTTCATTGAGAACTAGTTCCCCTAATTCTGTCATGCATCTGGCTACATGTTCAATGGTTGATACTTTTCCCAATTGCTGAATTTTTTAACTGAGTGTTTTCTTCTGTTGAGTTTTTGTTGATTGATTTTGAAGTTCTAAGTTGATTTTTTTTTTTATTAATTTAGGGTATTTAAAATAAATAAGTGAAATTTAAGTTTGTTGTTTGTGCTTGTGGTTTGAAATTTTCAGTTTAGTTTTTGTGTGGATTATGTTTGTTTGAATACTCGTCGCAATTATTTGACTGGGATGAGTTGGTTGTTGTGTGCAAGTCAACCCTATTATGTGATTCTAGATTGTAAGTTCAACCAACTTTGTAAGTTCTACGAATAACTGAGGCATTGTATTTTTTTTTTTTTTTAATTTTTTTTATAGTGATGGGATGTGAAATTGTAATGATGTATCAATTGATAACTTGTACTTTATGATTAGAGATGGCCATTAAGAATCTTTTTGCATAAGCGCAAATCATTTGAATTTTGAGCCATCAACATATAATTTTGAAGCTCAAATATGGAAAAACATTGGTGTTTGACTTGGATACAATATTGATTCACTTCTGATATTTGCCAATAAATACACAAACACATATATTTGTTAGTGTATCTTGGTCGTATTGTATTTGATTTTTAAAGAAATTGTAGTATTTGTGTCATATCATATCCATGTTGTTCTATGTAGCTGGGCTTCTTAGATTTAAACTTTTGGGGGTGGAGGATAATGTGAGAGTGGGGTTTATGCAAGAGATACTAGCATTCTGCTCTCAAGTTTAATCTAATTTTCAATTGTACTAATTGTTGTGGATTTGTTTTGTTCATTCATCTCATTTTTCTGTTGTTATGAATAGAATACTTGCTAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGCTATATACATGAACTAGAACGCAAAGTTCAGACCCTACAGACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATACCAGGTTTGTGTTGACATTTATCTACAACGACTGCACTTTAAAAGTTCGATATTGCAGAGTAACTTTGTTTTGTTTATTGGATTTATTGGTGTAGCTTAGAGCAATAAATTTAACTGCCTTGTTCATCATTTTCCTCGAGCCATATTTCCTTGTTCCAATTGTAGCTAAAAAATGACTTTTGGAAGCATTCTATTTGTATTTCTCTCAGAAATTCCTTTTATATAAAATCTTCTAGATATTTACTATACATATATTCACTTCGGTGATTTGGGTTTCAGTGTTATAACATAATGTTGCTTTGTTTGTGAATGGTTCACTGTGATTGTTTTAAGTTTTTCCTCATACTTAAATTTGTGGCTAAATTGACCCAATCACTTCTTGATTATTTGTTTCTTTATTGTAGCGAGACACAACAGGTCTGAGTACTGAAAATACTGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCACATCTCCGTGATGGTAACAATTATCACCTTTCTTACAATACGTTAAAAATTCTCACTTCATAACATTTTTTTCCTGCTCAAACTTTTGAAGTGTGTTATTGAAGTTAATTAACTCAACTGGATTTTATTTGTCTTTTAATTAACTCAACTGGGTTTTATTTGTCTTTTGCTGTAGCTCTTAATGATGCATTGAAGAAAGAAGTTGAGAGATTGAAGGTTGCTACTGGAGATATAATGAGCCACACTGAATCTTTTAATCTTGGTATGCACCAAATGCAATTTACAGAATCAAATTACGCTCCAATTCCACCACAAGGTCCTTCTGGTCACCGGAACATCCAGTTGCCACTATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACCAATTCTCATTCATATTCAGAATTATTACAAAATGACCAGATTGGTCGTTTTCAGGGACTTGACATTAGTAGCAAAGGAACAGCTGTTGTAAAGTCCGAAGATCCTTCTCTTTCTGCAAGTGAAAGTAGCACAACATTTTGA

Protein sequence

>MS.gene26260.t1

MMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGDGGADPGGNDEAEKNPVRSRHRHSNSVDGSSSFGEIMDGKKAMPPDKLAELWSVDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTESFNLGMHQMQFTESNYAPIPPQGPSGHRNIQLPLFGHSPSSMPSHQLHQTNSHSYSELLQNDQIGRFQGLDISSKGTAVVKSEDPSLSASESSTTF