AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26395

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26395.t1 MTR_4g088225 94.838 678 35 0 1 678 1 678 0.0 1324
MS.gene26395.t1 MTR_4g088225 94.838 678 35 0 1 678 1 678 0.0 1323
MS.gene26395.t1 MTR_1g073740 62.463 674 249 4 5 677 6 676 0.0 895
MS.gene26395.t1 MTR_0011s0020 44.562 662 344 6 20 678 15 656 0.0 590
MS.gene26395.t1 MTR_2g037830 42.749 662 354 7 20 677 15 655 0.0 578
MS.gene26395.t1 MTR_3g005560 42.145 662 358 6 20 676 15 656 0.0 568
MS.gene26395.t1 MTR_3g450800 43.831 616 330 5 65 677 4 606 0.0 561
MS.gene26395.t1 MTR_3g005560 43.784 555 290 4 20 571 15 550 5.38e-166 488
MS.gene26395.t1 MTR_2g037830 46.008 476 233 6 20 491 15 470 1.08e-149 445
MS.gene26395.t1 MTR_3g060220 36.693 635 377 9 59 681 52 673 3.53e-138 422
MS.gene26395.t1 MTR_3g060220 36.635 636 377 9 59 681 52 674 4.95e-138 422
MS.gene26395.t1 MTR_3g060240 37.760 625 363 10 59 670 52 663 3.66e-137 420
MS.gene26395.t1 MTR_3g060280 35.503 676 400 11 21 681 21 675 3.53e-134 412
MS.gene26395.t1 MTR_3g005560 46.838 427 203 5 20 442 15 421 6.62e-133 398
MS.gene26395.t1 MTR_2g016630 33.605 735 398 15 15 672 172 893 2.53e-122 388
MS.gene26395.t1 MTR_8g063270 33.809 701 391 15 41 677 6 697 1.69e-120 377
MS.gene26395.t1 MTR_4g130510 32.692 728 403 14 24 680 251 962 4.21e-120 383
MS.gene26395.t1 MTR_8g086600 33.333 744 404 18 6 672 177 905 1.21e-119 381
MS.gene26395.t1 MTR_8g063270 33.195 723 393 17 19 677 206 902 2.68e-118 377
MS.gene26395.t1 MTR_1g069605 32.316 721 403 17 24 677 111 813 1.57e-113 362
MS.gene26395.t1 MTR_4g130510 31.234 762 403 15 24 680 251 996 2.34e-113 366
MS.gene26395.t1 MTR_3g060280 36.201 558 324 10 21 563 21 561 2.71e-111 348
MS.gene26395.t1 MTR_3g060280 36.282 554 321 10 21 559 21 557 1.12e-110 346
MS.gene26395.t1 MTR_2g087960 33.133 667 402 15 40 678 37 687 5.19e-110 349
MS.gene26395.t1 MTR_2g087980 33.487 651 386 14 57 678 45 677 5.51e-110 349
MS.gene26395.t1 MTR_2g087950 33.803 639 387 12 57 674 47 670 1.58e-108 346
MS.gene26395.t1 MTR_2g087900 32.000 650 391 15 54 663 46 684 2.79e-105 337
MS.gene26395.t1 MTR_4g050000 31.562 640 405 14 57 674 47 675 4.50e-104 333
MS.gene26395.t1 MTR_4g130510 34.355 620 319 14 24 572 251 853 7.86e-104 336
MS.gene26395.t1 MTR_2g087960 34.312 545 321 11 40 559 37 569 7.82e-101 320
MS.gene26395.t1 MTR_2g087900 34.464 560 322 14 54 580 46 593 5.15e-99 316
MS.gene26395.t1 MTR_4g077910 29.887 793 410 17 24 681 289 1070 3.33e-95 318
MS.gene26395.t1 MTR_5g029190 29.375 800 417 19 14 677 258 1045 9.51e-95 317
MS.gene26395.t1 MTR_7g109200 29.353 804 414 18 15 677 304 1094 1.49e-94 317
MS.gene26395.t1 MTR_1g039445 28.608 783 420 16 24 680 261 1030 2.13e-92 310
MS.gene26395.t1 MTR_1g039480 28.536 799 416 18 24 681 275 1059 2.44e-91 308
MS.gene26395.t1 MTR_2g438220 28.283 792 420 21 24 681 175 952 2.64e-89 300
MS.gene26395.t1 MTR_3g060280 35.857 449 253 11 21 451 21 452 8.66e-83 269
MS.gene26395.t1 MTR_2g087900 34.014 441 248 12 53 459 45 476 5.27e-75 249
MS.gene26395.t1 MTR_8g092590 36.387 382 210 7 24 382 289 660 5.33e-73 256
MS.gene26395.t1 MTR_8g092590 35.275 309 187 7 379 680 718 1020 2.75e-46 177
MS.gene26395.t1 MTR_7g106680 36.772 378 212 8 24 381 229 599 7.79e-72 252
MS.gene26395.t1 MTR_7g106680 34.766 256 158 4 421 673 700 949 2.42e-40 159
MS.gene26395.t1 MTR_1g098550 36.675 379 213 8 24 382 291 662 2.96e-71 251
MS.gene26395.t1 MTR_1g098550 35.495 293 182 4 390 680 734 1021 3.86e-43 168
MS.gene26395.t1 MTR_1g098550 36.675 379 213 8 24 382 287 658 4.37e-71 250
MS.gene26395.t1 MTR_1g098550 35.495 293 182 4 390 680 730 1017 5.00e-43 167
MS.gene26395.t1 MTR_4g130510 36.883 385 210 8 24 385 251 625 8.38e-71 244
MS.gene26395.t1 MTR_3g030040 38.123 341 190 4 59 379 300 639 1.00e-70 249
MS.gene26395.t1 MTR_3g030040 32.867 286 186 4 390 673 714 995 1.82e-41 162
MS.gene26395.t1 MTR_2g035780 36.412 379 208 9 24 379 222 590 3.38e-70 248
MS.gene26395.t1 MTR_2g035780 34.507 284 179 4 396 677 687 965 3.21e-43 168
MS.gene26395.t1 MTR_8g037260 37.609 343 193 4 59 381 300 641 9.78e-69 244
MS.gene26395.t1 MTR_8g037260 33.451 284 183 4 396 677 720 999 5.18e-42 164
MS.gene26395.t1 MTR_3g107520 36.436 376 212 7 24 379 281 649 2.84e-67 239
MS.gene26395.t1 MTR_3g107520 34.386 285 179 5 392 673 724 1003 2.98e-42 165
MS.gene26395.t1 MTR_3g007770 35.356 379 218 7 24 382 238 609 3.58e-67 239
MS.gene26395.t1 MTR_3g007770 31.190 311 205 6 376 680 666 973 9.14e-42 164
MS.gene26395.t1 MTR_7g116230 33.137 510 241 14 59 470 174 681 6.08e-67 236
MS.gene26395.t1 MTR_2g087900 37.179 312 172 7 53 349 45 347 8.20e-64 216
MS.gene26395.t1 MTR_3g091270 31.930 285 149 7 99 379 107 350 4.16e-36 142
MS.gene26395.t1 MTR_2g087900 36.905 168 99 3 53 216 45 209 1.05e-30 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26395.t1 AT4G24000 38.733 679 376 12 10 676 11 661 4.33e-159 476
MS.gene26395.t1 AT4G24010 37.977 682 388 10 10 678 14 673 5.82e-155 466
MS.gene26395.t1 AT4G23990 38.235 680 389 8 6 674 29 688 2.17e-153 462
MS.gene26395.t1 AT1G55850 34.873 628 378 5 57 677 64 667 6.42e-126 390
MS.gene26395.t1 AT5G17420 33.429 694 380 12 59 680 267 950 7.15e-120 382
MS.gene26395.t1 AT4G18780 33.787 734 383 16 24 672 184 899 5.31e-118 377
MS.gene26395.t1 AT5G64740 32.353 748 400 16 24 680 276 1008 2.40e-116 374
MS.gene26395.t1 AT2G25540 31.627 762 421 17 3 677 233 981 1.54e-115 372
MS.gene26395.t1 AT4G24000 38.650 489 271 7 196 676 2 469 1.63e-113 352
MS.gene26395.t1 AT4G32410 32.245 735 401 17 24 673 275 997 2.11e-113 367
MS.gene26395.t1 AT5G09870 31.812 745 405 17 24 680 264 993 5.55e-113 365
MS.gene26395.t1 AT2G32540 33.876 614 353 14 59 638 51 645 4.05e-112 355
MS.gene26395.t1 AT2G32530 32.948 692 390 22 34 675 30 697 6.25e-112 355
MS.gene26395.t1 AT4G23990 38.398 487 278 5 196 674 2 474 1.76e-107 336
MS.gene26395.t1 AT4G15320 32.059 680 389 18 37 670 36 688 2.25e-107 343
MS.gene26395.t1 AT4G15320 32.059 680 389 18 37 670 36 688 2.30e-107 343
MS.gene26395.t1 AT4G15320 32.138 669 381 18 59 670 51 703 1.51e-105 338
MS.gene26395.t1 AT2G32620 31.689 669 381 19 59 675 51 695 9.35e-101 325
MS.gene26395.t1 AT4G15290 31.579 665 386 20 59 676 51 693 6.73e-100 323
MS.gene26395.t1 AT2G32610 31.642 670 371 21 59 671 51 690 3.15e-98 318
MS.gene26395.t1 AT2G32620 35.065 539 288 17 59 558 51 566 3.53e-96 309
MS.gene26395.t1 AT4G38190 29.381 776 417 17 24 681 272 1034 1.74e-95 318
MS.gene26395.t1 AT1G32180 28.818 812 417 21 15 680 113 909 1.69e-94 313
MS.gene26395.t1 AT1G32180 28.818 812 417 21 15 680 113 909 1.69e-94 313
MS.gene26395.t1 AT2G32620 36.498 474 255 13 59 501 51 509 2.01e-93 300
MS.gene26395.t1 AT4G15320 31.101 672 346 19 37 631 36 667 1.93e-92 304
MS.gene26395.t1 AT1G02730 28.996 807 402 20 24 677 318 1106 2.64e-92 311
MS.gene26395.t1 AT2G33100 28.070 798 420 22 24 681 183 966 1.77e-90 304
MS.gene26395.t1 AT2G33100 28.070 798 420 22 24 681 183 966 1.77e-90 304
MS.gene26395.t1 AT5G16910 28.553 788 422 19 24 681 297 1073 2.51e-89 302
MS.gene26395.t1 AT3G03050 27.686 791 428 16 24 681 294 1073 3.42e-89 302
MS.gene26395.t1 AT2G32620 31.140 623 354 18 104 675 1 599 8.24e-89 291
MS.gene26395.t1 AT4G15320 29.753 689 339 20 59 631 51 710 1.08e-85 287
MS.gene26395.t1 AT4G39350 36.649 382 209 7 24 382 277 648 5.43e-71 250
MS.gene26395.t1 AT4G39350 33.577 274 176 3 390 661 720 989 1.12e-39 157
MS.gene26395.t1 AT2G21770 36.111 396 219 8 8 382 271 653 1.23e-70 249
MS.gene26395.t1 AT2G21770 33.993 303 193 4 380 680 714 1011 4.93e-43 167
MS.gene26395.t1 AT5G05170 36.436 376 212 5 24 379 259 627 3.13e-70 248
MS.gene26395.t1 AT5G05170 32.414 290 190 4 390 677 701 986 3.91e-41 162
MS.gene26395.t1 AT5G44030 36.148 379 209 9 24 379 215 583 4.29e-69 244
MS.gene26395.t1 AT5G44030 35.764 288 178 6 396 680 690 973 4.36e-43 167
MS.gene26395.t1 AT5G44030 36.148 379 209 9 24 379 244 612 5.46e-69 244
MS.gene26395.t1 AT5G44030 35.764 288 178 6 396 680 719 1002 5.20e-43 167
MS.gene26395.t1 AT5G44030 39.016 305 166 6 91 379 4 304 7.58e-65 229
MS.gene26395.t1 AT5G44030 35.764 288 178 6 396 680 411 694 2.30e-43 167

Find 164 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCATATATGGGCCTTTA+AGG 0.070894 4.1:+22038916 MS.gene26395:CDS
TCTAAAGTGGGTTCCTTAAT+TGG 0.141463 4.1:-22037049 None:intergenic
CTCTCCTTCATTTGGTTCCT+TGG 0.172567 4.1:+22036923 MS.gene26395:CDS
CTCTTTATTGTTTGCCCCTT+TGG 0.176106 4.1:+22038985 MS.gene26395:CDS
GGAAGTCGTATTTATCATTT+TGG 0.178591 4.1:-22039422 None:intergenic
CTGCAACTTCGAGAATATTT+TGG 0.180704 4.1:+22038480 MS.gene26395:CDS
TAGGCTTCTTGTTCTATTAC+AGG 0.204037 4.1:+22036819 MS.gene26395:CDS
TCAAGAGATGGTATTACTTT+TGG 0.207697 4.1:+22037486 MS.gene26395:CDS
GATATGAAACTGGCACTAAA+TGG 0.224428 4.1:+22038607 MS.gene26395:CDS
TGGAGTAGTGGCATCCTTAA+AGG 0.244360 4.1:-22038930 None:intergenic
ATGGCATATCGAGCTGAATT+TGG 0.256825 4.1:-22038032 None:intergenic
CTGGAGGAACACTACATAAA+TGG 0.257412 4.1:+22039253 MS.gene26395:CDS
TGATGATAAGCAACAACTTT+TGG 0.260318 4.1:-22036763 None:intergenic
CCTCAGTTCTGTCTACTAAA+TGG 0.263774 4.1:+22039023 MS.gene26395:CDS
TCATCCTCTGGCAATCTCTC+TGG 0.273425 4.1:-22036986 None:intergenic
TTACTAGAAGTCTTCTTAAC+TGG 0.287101 4.1:+22039234 MS.gene26395:CDS
TGGAGTTTATAGAGTGATAT+TGG 0.310644 4.1:+22039512 MS.gene26395:CDS
TTCTCCCTACATCCTAGTTC+TGG 0.315742 4.1:+22037986 MS.gene26395:CDS
GGTTCCAAACACATGTTAAA+TGG 0.317843 4.1:-22039783 None:intergenic
TCATCCTCTGCTTTATTAGT+AGG 0.327364 4.1:-22039381 None:intergenic
GCAAGGGATGGACGGGCTTA+AGG 0.330461 4.1:+22038253 MS.gene26395:CDS
AAATCATTCTCTCCTTCATT+TGG 0.335597 4.1:+22036915 MS.gene26395:CDS
GGCAGAGAAGCAAAAGATTA+AGG 0.344678 4.1:+22037312 MS.gene26395:CDS
TTGCAATCTATATGGTTGTT+TGG 0.355256 4.1:+22039314 MS.gene26395:CDS
TCAACTACTTGCAATCTATA+TGG 0.355613 4.1:+22039306 MS.gene26395:CDS
GGATCAATGAGCAGAGAATC+TGG 0.363474 4.1:+22039274 MS.gene26395:CDS
ATGCACTGCAGATCCAATTA+AGG 0.368192 4.1:+22037036 MS.gene26395:CDS
GACAAGGAGGATGATATCTT+TGG 0.372812 4.1:-22038071 None:intergenic
CAAAGCAGAAAAGTAGGCCT+TGG 0.385342 4.1:-22037248 None:intergenic
TACTCTGGTTTGTTCGAAAA+CGG 0.388375 4.1:+22038876 MS.gene26395:CDS
GCTCGAAGAACCTCACTTGT+TGG 0.395209 4.1:+22038575 MS.gene26395:CDS
ATATGAAACTGGCACTAAAT+GGG 0.398753 4.1:+22038608 MS.gene26395:CDS
CTTGGGAGTTTGCAAGGTGG+TGG 0.404254 4.1:+22037185 MS.gene26395:CDS
AGTTGTTGCTTATCATCAAT+AGG 0.407981 4.1:+22036768 MS.gene26395:CDS
CCAAGGAACTGTGGCCTAGA+TGG 0.410757 4.1:-22038804 None:intergenic
ACTCTGGTTTGTTCGAAAAC+GGG 0.411001 4.1:+22038877 MS.gene26395:CDS
CAAGGGATGGACGGGCTTAA+GGG 0.413602 4.1:+22038254 MS.gene26395:CDS
TCCTTAAAGGCCCATATATG+AGG 0.417596 4.1:-22038917 None:intergenic
GCATTGTAACGGATGGAATT+CGG 0.422318 4.1:+22038770 MS.gene26395:CDS
GCTTCTTGTAGATATGAAAC+TGG 0.425990 4.1:+22038597 MS.gene26395:CDS
CATGTGTATCTTTCAGATGA+TGG 0.428039 4.1:+22037127 MS.gene26395:CDS
CTGTGTTACCTTAGGATACA+AGG 0.430250 4.1:-22039051 None:intergenic
GATGCTTTACTGAAGAAAGT+TGG 0.432109 4.1:+22039336 MS.gene26395:CDS
AAAGCAGAAAAGTAGGCCTT+GGG 0.434065 4.1:-22037247 None:intergenic
TGAGGGCTCCAGCTTTGAAA+TGG 0.444970 4.1:-22037831 None:intergenic
CATCCTCTGGCAATCTCTCT+GGG 0.449447 4.1:-22036985 None:intergenic
TACTAATCCAAGGCACTAGA+TGG 0.455870 4.1:+22038853 MS.gene26395:CDS
TCCTTGGCCAAGCTTATCGC+TGG 0.456621 4.1:+22036939 MS.gene26395:CDS
TCGAGCAATGTATTCCGTCC+TGG 0.457971 4.1:-22038558 None:intergenic
CTCCTTCATTCCATGGCTCT+AGG 0.469797 4.1:+22036800 MS.gene26395:CDS
TGGGAAGACATAACGTGAAA+CGG 0.477193 4.1:-22036966 None:intergenic
AGGCTTCTTGTTCTATTACA+GGG 0.479759 4.1:+22036820 MS.gene26395:CDS
CAATTTGCAGAGAAAGTATG+AGG 0.482474 4.1:+22037419 MS.gene26395:intron
AGTCCCCACCATTTCAAAGC+TGG 0.483676 4.1:+22037823 MS.gene26395:CDS
GGGAAGACATAACGTGAAAC+GGG 0.483928 4.1:-22036965 None:intergenic
GGCTCCAGCTTTGAAATGGT+GGG 0.486191 4.1:-22037827 None:intergenic
GCAGGGAGCTTGTCATCCTC+TGG 0.486915 4.1:-22036998 None:intergenic
AGTGTTCATCACTTCTAAAG+TGG 0.487025 4.1:-22037062 None:intergenic
CCATCTAGGCCACAGTTCCT+TGG 0.487196 4.1:+22038804 MS.gene26395:CDS
ACACATGCTCCTTCATTCCA+TGG 0.492247 4.1:+22036793 MS.gene26395:CDS
CGAGCAATGTATTCCGTCCT+GGG 0.494664 4.1:-22038557 None:intergenic
GTATGGTGTGAGGAAGGCTT+GGG 0.495077 4.1:+22037168 MS.gene26395:CDS
GCTCTGCAAAACACAGACTT+TGG 0.495249 4.1:-22038950 None:intergenic
TATTCTGTACCTTCTGCAGA+AGG 0.499017 4.1:-22037212 None:intergenic
GAAGGTACAGAATAAAGAAC+AGG 0.500742 4.1:+22037221 MS.gene26395:CDS
TGTATGGTGTGAGGAAGGCT+TGG 0.500918 4.1:+22037167 MS.gene26395:CDS
CAGAGTACCATCTAGTGCCT+TGG 0.501479 4.1:-22038860 None:intergenic
CAAGGAGCCATGGTAACAAA+TGG 0.502268 4.1:-22036880 None:intergenic
CAAAGGGGCAAACAATAAAG+AGG 0.504519 4.1:-22038984 None:intergenic
AGCCTAGAGCCATGGAATGA+AGG 0.506111 4.1:-22036802 None:intergenic
GGATTTATCTTGCATTGTAA+CGG 0.506211 4.1:+22038759 MS.gene26395:CDS
GGTGGCTTCCCTTCTGCAGA+AGG 0.510610 4.1:+22037203 MS.gene26395:CDS
TTATCTTGCATTGTAACGGA+TGG 0.511997 4.1:+22038763 MS.gene26395:CDS
TGCCAGGAGTAGTGTTTACA+TGG 0.512757 4.1:+22037291 MS.gene26395:CDS
GATGGTGGCAAAACACCAAA+GGG 0.515466 4.1:-22039000 None:intergenic
TGCCATGTAAACACTACTCC+TGG 0.515527 4.1:-22037293 None:intergenic
GTAGTCGAAGATTTCCTGAC+TGG 0.518872 4.1:+22038738 MS.gene26395:CDS
ACAATCCAGAACTAGGATGT+AGG 0.519220 4.1:-22037991 None:intergenic
CTTAAGGGACCTGTATTGTC+AGG 0.520784 4.1:+22038269 MS.gene26395:CDS
TACAATGGCAAGGGATGGAC+GGG 0.522235 4.1:+22038246 MS.gene26395:CDS
AATGCAAGATAAATCCAGTC+AGG 0.527019 4.1:-22038752 None:intergenic
TGGAATACCCTTGTATCCTA+AGG 0.531703 4.1:+22039043 MS.gene26395:CDS
TATTGAGAGGAAGAGTCCCT+TGG 0.531960 4.1:-22036730 None:intergenic
AAGCATGTACCTGACAATAC+AGG 0.534743 4.1:-22038278 None:intergenic
GAACAAGAAGCCTAGAGCCA+TGG 0.535046 4.1:-22036810 None:intergenic
TTGAACAACTTCAGCTACAA+TGG 0.536811 4.1:+22038231 MS.gene26395:intron
ATTGAGAGGAAGAGTCCCTT+GGG 0.539211 4.1:-22036729 None:intergenic
GGGCTCCAGCTTTGAAATGG+TGG 0.541590 4.1:-22037828 None:intergenic
CAAGGCACTAGATGGTACTC+TGG 0.543521 4.1:+22038861 MS.gene26395:CDS
ACTCTCCAAAGCAGAAAAGT+AGG 0.544277 4.1:-22037254 None:intergenic
CAATCCAGAACTAGGATGTA+GGG 0.544829 4.1:-22037990 None:intergenic
ATGAAAAGGGTATCATTGTA+CGG 0.545021 4.1:+22038305 MS.gene26395:CDS
CTCACACCATACAGAGTCAT+GGG 0.545146 4.1:-22037157 None:intergenic
ACATGTCACAATCCAGAACT+AGG 0.545632 4.1:-22037998 None:intergenic
GGAAGGCTTGGGAGTTTGCA+AGG 0.546262 4.1:+22037179 MS.gene26395:CDS
TACGGAAATCAAGCGAATGA+AGG 0.548147 4.1:+22038323 MS.gene26395:CDS
CGGGACGCCAGCGATAAGCT+TGG 0.548345 4.1:-22036946 None:intergenic
ATGTGTATCTTTCAGATGAT+GGG 0.551013 4.1:+22037128 MS.gene26395:CDS
CTACAATGGCAAGGGATGGA+CGG 0.551068 4.1:+22038245 MS.gene26395:CDS
AAATATGTTGATTGTGAGGA+GGG 0.553265 4.1:-22039478 None:intergenic
CTCGAAACATAGACAAGTTG+TGG 0.554608 4.1:-22037784 None:intergenic
AGGATGATATCTTTGGATCA+AGG 0.554905 4.1:-22038064 None:intergenic
AATATTCTCGAAGTTGCAGC+AGG 0.557617 4.1:-22038476 None:intergenic
CATATGAACACATCAACAGC+AGG 0.558578 4.1:-22037016 None:intergenic
ATTGTGAGGAGGGCAAGCAT+TGG 0.559251 4.1:-22039468 None:intergenic
CTAGAAGTCTTCTTAACTGG+AGG 0.559844 4.1:+22039237 MS.gene26395:CDS
GGATGGTGGCAAAACACCAA+AGG 0.560347 4.1:-22039001 None:intergenic
ATGGCCGTACAAGGACATTG+AGG 0.561723 4.1:-22037849 None:intergenic
TTGAATGATGTACTAATCCA+AGG 0.561797 4.1:+22038843 MS.gene26395:CDS
GACTCTGTATGGTGTGAGGA+AGG 0.567745 4.1:+22037162 MS.gene26395:CDS
TGGCCGTACAAGGACATTGA+GGG 0.568429 4.1:-22037848 None:intergenic
AGATCATTCATCAGTCATTG+AGG 0.572393 4.1:+22037509 MS.gene26395:CDS
CTAATGTTGTGAAATTTCTG+AGG 0.573072 4.1:-22038107 None:intergenic
TTGGCCAAGGAACCAAATGA+AGG 0.575063 4.1:-22036927 None:intergenic
CCTTAAAGGCCCATATATGA+GGG 0.575643 4.1:-22038916 None:intergenic
CCTCACACCATACAGAGTCA+TGG 0.580155 4.1:-22037158 None:intergenic
AGTAATACCATCTCTTGAGA+AGG 0.580252 4.1:-22037481 None:intergenic
AGAAGATATCATTGATGATG+TGG 0.580750 4.1:+22037747 MS.gene26395:CDS
GACAAAATATGTTGATTGTG+AGG 0.583493 4.1:-22039482 None:intergenic
GATGAGGCCTTCTCAAGAGA+TGG 0.584597 4.1:+22037474 MS.gene26395:CDS
GTGTTCATCACTTCTAAAGT+GGG 0.585414 4.1:-22037061 None:intergenic
AAACACAGACTTTGGAGTAG+TGG 0.589371 4.1:-22038942 None:intergenic
GCTCCAGCTTTGAAATGGTG+GGG 0.590422 4.1:-22037826 None:intergenic
GGGGAAGCCATTTGTTACCA+TGG 0.592373 4.1:+22036873 MS.gene26395:CDS
GTTCGAAAACGGGATAAGCA+AGG 0.594256 4.1:+22038887 MS.gene26395:CDS
CTTAAAGGCCCATATATGAG+GGG 0.605824 4.1:-22038915 None:intergenic
CAACTTCAGCTACAATGGCA+AGG 0.607668 4.1:+22038236 MS.gene26395:intron
TGGACATGGCAGGTATTGAG+AGG 0.609066 4.1:-22036743 None:intergenic
GCCAGCGATAAGCTTGGCCA+AGG 0.610444 4.1:-22036940 None:intergenic
AAAGGGGCAAACAATAAAGA+GGG 0.612126 4.1:-22038983 None:intergenic
TAGACAGAACTGAGGGATGG+TGG 0.613347 4.1:-22039015 None:intergenic
CATTTAGTAGACAGAACTGA+GGG 0.613491 4.1:-22039022 None:intergenic
TACACATGAATCTTCTGTTG+AGG 0.617007 4.1:-22037112 None:intergenic
TCAGCTACAATGGCAAGGGA+TGG 0.617186 4.1:+22038241 MS.gene26395:intron
AAAATATGTTGATTGTGAGG+AGG 0.617494 4.1:-22039479 None:intergenic
CTTACCTACTAATAAAGCAG+AGG 0.620480 4.1:+22039377 MS.gene26395:CDS
TATGAAACTGGCACTAAATG+GGG 0.620691 4.1:+22038609 MS.gene26395:CDS
ATTCTGTACCTTCTGCAGAA+GGG 0.622468 4.1:-22037211 None:intergenic
AGAGACATTCAGAAAAGATG+AGG 0.623555 4.1:+22037458 MS.gene26395:CDS
TGTGTTACCTTAGGATACAA+GGG 0.624805 4.1:-22039050 None:intergenic
TTTCCAAGACCAAGAAAACA+GGG 0.624831 4.1:+22036853 MS.gene26395:CDS
AACTTCAGCTACAATGGCAA+GGG 0.624923 4.1:+22038237 MS.gene26395:intron
GGAGAAATGGAGGTAACCCA+AGG 0.634770 4.1:+22036713 None:intergenic
AATAAAGAACAGGTGCCCCA+AGG 0.644833 4.1:+22037231 MS.gene26395:CDS
TTGAGGATAATCTAGTGCCA+TGG 0.650068 4.1:-22037095 None:intergenic
TGGATCAAGGTGAAAACACA+TGG 0.655681 4.1:-22038051 None:intergenic
CTACAAGAAGCCAACAAGTG+AGG 0.656944 4.1:-22038585 None:intergenic
AATTTGTCGTAGCTGTACCA+AGG 0.662023 4.1:-22038821 None:intergenic
TAGTAGACAGAACTGAGGGA+TGG 0.662046 4.1:-22039018 None:intergenic
GAGAAATGGAGGTAACCCAA+GGG 0.667623 4.1:+22036714 None:intergenic
AGGAAATTGAACAAAAGACA+AGG 0.668900 4.1:-22038087 None:intergenic
TTAAAGGCCCATATATGAGG+GGG 0.684129 4.1:-22038914 None:intergenic
CCATTTAGTAGACAGAACTG+AGG 0.684834 4.1:-22039023 None:intergenic
CCATGACTCTGTATGGTGTG+AGG 0.687665 4.1:+22037158 MS.gene26395:CDS
GTAGCTGTACCAAGGAACTG+TGG 0.688487 4.1:-22038813 None:intergenic
CTTCCCAGAGAGATTGCCAG+AGG 0.691580 4.1:+22036982 MS.gene26395:CDS
TCACACCATACAGAGTCATG+GGG 0.693106 4.1:-22037156 None:intergenic
AGGCTTGGGAGTTTGCAAGG+TGG 0.698000 4.1:+22037182 MS.gene26395:CDS
TTCCAAGACCAAGAAAACAG+GGG 0.702380 4.1:+22036854 MS.gene26395:CDS
AAGCAGAAAAGTAGGCCTTG+GGG 0.718114 4.1:-22037246 None:intergenic
AAATTGAACAAAAGACAAGG+AGG 0.720972 4.1:-22038084 None:intergenic
ATATGAACACATCAACAGCA+GGG 0.739860 4.1:-22037015 None:intergenic
ATGGTGGCAAAACACCAAAG+GGG 0.740329 4.1:-22038999 None:intergenic
CACACCATACAGAGTCATGG+GGG 0.754927 4.1:-22037155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAGATGATAAAATA+TGG - chr4.1:22039186-22039205 None:intergenic 10.0%
!! TATGTTAGTTCATAACATAA+AGG - chr4.1:22038419-22038438 None:intergenic 20.0%
!!! CAAGTTTTGTATATATACTT+TGG - chr4.1:22037886-22037905 None:intergenic 20.0%
!!! TACATGCTTTTATATGAAAA+GGG + chr4.1:22038292-22038311 MS.gene26395:CDS 20.0%
! TGTAATGATAAAACTTGCAA+GGG - chr4.1:22039571-22039590 None:intergenic 25.0%
! TTGTAATGATAAAACTTGCA+AGG - chr4.1:22039572-22039591 None:intergenic 25.0%
! TTTAATATCTGTGTTACCTT+AGG - chr4.1:22039062-22039081 None:intergenic 25.0%
!! ACATTTTATCTGAATTTTGC+AGG + chr4.1:22037717-22037736 MS.gene26395:intron 25.0%
!! GTACATGCTTTTATATGAAA+AGG + chr4.1:22038291-22038310 MS.gene26395:CDS 25.0%
!! GTATAATTTTGAACTGTTTC+AGG + chr4.1:22038695-22038714 MS.gene26395:intron 25.0%
!! TATATACTTTGGAAGATAGA+AGG - chr4.1:22037875-22037894 None:intergenic 25.0%
!!! ACATTTTTTTTGACAGGTTT+CGG + chr4.1:22039158-22039177 MS.gene26395:intron 25.0%
!!! CTGTTCTGAGTTTTAAATTT+AGG + chr4.1:22038444-22038463 MS.gene26395:intron 25.0%
!!! TCTGAGTTTTAAATTTAGGA+GGG + chr4.1:22038448-22038467 MS.gene26395:intron 25.0%
!!! TCTTGAACATTTTTTTTGAC+AGG + chr4.1:22039152-22039171 MS.gene26395:intron 25.0%
!!! TTCTGAGTTTTAAATTTAGG+AGG + chr4.1:22038447-22038466 MS.gene26395:intron 25.0%
AAACTCAAATTATTGCTGTC+AGG - chr4.1:22037592-22037611 None:intergenic 30.0%
AAATCATTCTCTCCTTCATT+TGG + chr4.1:22036915-22036934 MS.gene26395:CDS 30.0%
AAATTGAACAAAAGACAAGG+AGG - chr4.1:22038087-22038106 None:intergenic 30.0%
ACTGCAAAGATTTAATCTCA+AGG - chr4.1:22038196-22038215 None:intergenic 30.0%
AGGAAATTGAACAAAAGACA+AGG - chr4.1:22038090-22038109 None:intergenic 30.0%
AGTTTATAGAGTGATATTGG+TGG + chr4.1:22039515-22039534 MS.gene26395:intron 30.0%
ATAAACTACCCTATCATTGA+AGG + chr4.1:22039591-22039610 MS.gene26395:intron 30.0%
ATATGAAACTGGCACTAAAT+GGG + chr4.1:22038608-22038627 MS.gene26395:CDS 30.0%
ATGTATGTTCTGCAATCTAA+AGG - chr4.1:22037369-22037388 None:intergenic 30.0%
ATGTGTATCTTTCAGATGAT+GGG + chr4.1:22037128-22037147 MS.gene26395:CDS 30.0%
CTAATGTTGTGAAATTTCTG+AGG - chr4.1:22038110-22038129 None:intergenic 30.0%
CTATAAAAATGTTCGATGCT+CGG - chr4.1:22039446-22039465 None:intergenic 30.0%
GGATTTATCTTGCATTGTAA+CGG + chr4.1:22038759-22038778 MS.gene26395:CDS 30.0%
GTTTATAGAGTGATATTGGT+GGG + chr4.1:22039516-22039535 MS.gene26395:intron 30.0%
TAAACTACCCTATCATTGAA+GGG + chr4.1:22039592-22039611 MS.gene26395:intron 30.0%
TCAACTACTTGCAATCTATA+TGG + chr4.1:22039306-22039325 MS.gene26395:CDS 30.0%
TGGAGTTTATAGAGTGATAT+TGG + chr4.1:22039512-22039531 MS.gene26395:CDS 30.0%
TTACTAGAAGTCTTCTTAAC+TGG + chr4.1:22039234-22039253 MS.gene26395:CDS 30.0%
TTGAATGATGTACTAATCCA+AGG + chr4.1:22038843-22038862 MS.gene26395:CDS 30.0%
TTGCAATCTATATGGTTGTT+TGG + chr4.1:22039314-22039333 MS.gene26395:CDS 30.0%
! AAAATATGTTGATTGTGAGG+AGG - chr4.1:22039482-22039501 None:intergenic 30.0%
! AAATATGTTGATTGTGAGGA+GGG - chr4.1:22039481-22039500 None:intergenic 30.0%
! AACATATTTTGTCTGGTAGT+TGG + chr4.1:22039492-22039511 MS.gene26395:CDS 30.0%
! AGTTGTTGCTTATCATCAAT+AGG + chr4.1:22036768-22036787 MS.gene26395:CDS 30.0%
! ATCTGAGATTGAAGTGAAAA+CGG - chr4.1:22039092-22039111 None:intergenic 30.0%
! CACAATCAACATATTTTGTC+TGG + chr4.1:22039485-22039504 MS.gene26395:CDS 30.0%
! GACAAAATATGTTGATTGTG+AGG - chr4.1:22039485-22039504 None:intergenic 30.0%
! GGAAGTCGTATTTATCATTT+TGG - chr4.1:22039425-22039444 None:intergenic 30.0%
! GTGATAATAATGATTTTGCC+AGG + chr4.1:22037275-22037294 MS.gene26395:CDS 30.0%
! TCAAGAGATGGTATTACTTT+TGG + chr4.1:22037486-22037505 MS.gene26395:CDS 30.0%
! TGATGATAAGCAACAACTTT+TGG - chr4.1:22036766-22036785 None:intergenic 30.0%
!! AATTTTGAACTGTTTCAGGT+AGG + chr4.1:22038699-22038718 MS.gene26395:intron 30.0%
!! AGAAGATATCATTGATGATG+TGG + chr4.1:22037747-22037766 MS.gene26395:CDS 30.0%
!! ATGAAAAGGGTATCATTGTA+CGG + chr4.1:22038305-22038324 MS.gene26395:CDS 30.0%
!! TGATTTCTGAAGCAAAAACA+AGG - chr4.1:22036901-22036920 None:intergenic 30.0%
AAAGGGGCAAACAATAAAGA+GGG - chr4.1:22038986-22039005 None:intergenic 35.0%
AATGCAAGATAAATCCAGTC+AGG - chr4.1:22038755-22038774 None:intergenic 35.0%
AGAGACATTCAGAAAAGATG+AGG + chr4.1:22037458-22037477 MS.gene26395:CDS 35.0%
AGATCATTCATCAGTCATTG+AGG + chr4.1:22037509-22037528 MS.gene26395:CDS 35.0%
AGGATGATATCTTTGGATCA+AGG - chr4.1:22038067-22038086 None:intergenic 35.0%
AGGCTTCTTGTTCTATTACA+GGG + chr4.1:22036820-22036839 MS.gene26395:CDS 35.0%
AGTAATACCATCTCTTGAGA+AGG - chr4.1:22037484-22037503 None:intergenic 35.0%
ATATGAACACATCAACAGCA+GGG - chr4.1:22037018-22037037 None:intergenic 35.0%
CATGTGTATCTTTCAGATGA+TGG + chr4.1:22037127-22037146 MS.gene26395:CDS 35.0%
CATTTAGTAGACAGAACTGA+GGG - chr4.1:22039025-22039044 None:intergenic 35.0%
CTTACCTACTAATAAAGCAG+AGG + chr4.1:22039377-22039396 MS.gene26395:CDS 35.0%
GATATGAAACTGGCACTAAA+TGG + chr4.1:22038607-22038626 MS.gene26395:CDS 35.0%
GATGCTTTACTGAAGAAAGT+TGG + chr4.1:22039336-22039355 MS.gene26395:CDS 35.0%
GCTTCTTGTAGATATGAAAC+TGG + chr4.1:22038597-22038616 MS.gene26395:CDS 35.0%
TACACATGAATCTTCTGTTG+AGG - chr4.1:22037115-22037134 None:intergenic 35.0%
TAGGCTTCTTGTTCTATTAC+AGG + chr4.1:22036819-22036838 MS.gene26395:CDS 35.0%
TATGAAACTGGCACTAAATG+GGG + chr4.1:22038609-22038628 MS.gene26395:CDS 35.0%
TGTCTAGTATAAAGTGCAGA+TGG - chr4.1:22037698-22037717 None:intergenic 35.0%
TGTGTTACCTTAGGATACAA+GGG - chr4.1:22039053-22039072 None:intergenic 35.0%
TTGAACAACTTCAGCTACAA+TGG + chr4.1:22038231-22038250 MS.gene26395:intron 35.0%
TTTCCAAGACCAAGAAAACA+GGG + chr4.1:22036853-22036872 MS.gene26395:CDS 35.0%
! AGTGTTCATCACTTCTAAAG+TGG - chr4.1:22037065-22037084 None:intergenic 35.0%
! CAATTTGCAGAGAAAGTATG+AGG + chr4.1:22037419-22037438 MS.gene26395:intron 35.0%
! CTGCAACTTCGAGAATATTT+TGG + chr4.1:22038480-22038499 MS.gene26395:CDS 35.0%
! GAACACTGTTTTATCATCCA+TGG + chr4.1:22037078-22037097 MS.gene26395:CDS 35.0%
! GAAGGTACAGAATAAAGAAC+AGG + chr4.1:22037221-22037240 MS.gene26395:CDS 35.0%
! TAAGCAACAACTTTTGGACA+TGG - chr4.1:22036760-22036779 None:intergenic 35.0%
! TACTTTGGAAGATAGAAGGA+TGG - chr4.1:22037871-22037890 None:intergenic 35.0%
! TCATCCTCTGCTTTATTAGT+AGG - chr4.1:22039384-22039403 None:intergenic 35.0%
! TCTAAAGTGGGTTCCTTAAT+TGG - chr4.1:22037052-22037071 None:intergenic 35.0%
! TGTTTTACAAGCAACCTTGT+GGG - chr4.1:22038355-22038374 None:intergenic 35.0%
! TTATCTTGCATTGTAACGGA+TGG + chr4.1:22038763-22038782 MS.gene26395:CDS 35.0%
! TTTTCCAAGACCAAGAAAAC+AGG + chr4.1:22036852-22036871 MS.gene26395:CDS 35.0%
!! GTGTTCATCACTTCTAAAGT+GGG - chr4.1:22037064-22037083 None:intergenic 35.0%
!! TACTCTGGTTTGTTCGAAAA+CGG + chr4.1:22038876-22038895 MS.gene26395:CDS 35.0%
!!! TACACAAGAGTTTTTTTCCC+AGG + chr4.1:22038540-22038559 MS.gene26395:CDS 35.0%
AAAGCAGAAAAGTAGGCCTT+GGG - chr4.1:22037250-22037269 None:intergenic 40.0%
AACTTCAGCTACAATGGCAA+GGG + chr4.1:22038237-22038256 MS.gene26395:intron 40.0%
AAGCATGTACCTGACAATAC+AGG - chr4.1:22038281-22038300 None:intergenic 40.0%
AATATTCTCGAAGTTGCAGC+AGG - chr4.1:22038479-22038498 None:intergenic 40.0%
AATTTGTCGTAGCTGTACCA+AGG - chr4.1:22038824-22038843 None:intergenic 40.0%
ACAATCCAGAACTAGGATGT+AGG - chr4.1:22037994-22038013 None:intergenic 40.0%
ACATGTCACAATCCAGAACT+AGG - chr4.1:22038001-22038020 None:intergenic 40.0%
ACTCTCCAAAGCAGAAAAGT+AGG - chr4.1:22037257-22037276 None:intergenic 40.0%
ATGCACTGCAGATCCAATTA+AGG + chr4.1:22037036-22037055 MS.gene26395:CDS 40.0%
ATGGCATATCGAGCTGAATT+TGG - chr4.1:22038035-22038054 None:intergenic 40.0%
ATTCTGTACCTTCTGCAGAA+GGG - chr4.1:22037214-22037233 None:intergenic 40.0%
CAAAGGGGCAAACAATAAAG+AGG - chr4.1:22038987-22039006 None:intergenic 40.0%
CAATCCAGAACTAGGATGTA+GGG - chr4.1:22037993-22038012 None:intergenic 40.0%
CATATGAACACATCAACAGC+AGG - chr4.1:22037019-22037038 None:intergenic 40.0%
CCATTTAGTAGACAGAACTG+AGG - chr4.1:22039026-22039045 None:intergenic 40.0%
CCTCAGTTCTGTCTACTAAA+TGG + chr4.1:22039023-22039042 MS.gene26395:CDS 40.0%
CCTTAAAGGCCCATATATGA+GGG - chr4.1:22038919-22038938 None:intergenic 40.0%
CTAGAAGTCTTCTTAACTGG+AGG + chr4.1:22039237-22039256 MS.gene26395:CDS 40.0%
CTCGAAACATAGACAAGTTG+TGG - chr4.1:22037787-22037806 None:intergenic 40.0%
CTCTTTATTGTTTGCCCCTT+TGG + chr4.1:22038985-22039004 MS.gene26395:CDS 40.0%
CTGGAGGAACACTACATAAA+TGG + chr4.1:22039253-22039272 MS.gene26395:CDS 40.0%
CTGTGTTACCTTAGGATACA+AGG - chr4.1:22039054-22039073 None:intergenic 40.0%
CTTAAAGGCCCATATATGAG+GGG - chr4.1:22038918-22038937 None:intergenic 40.0%
GACAAGGAGGATGATATCTT+TGG - chr4.1:22038074-22038093 None:intergenic 40.0%
GAGATTGAAGTGAAAACGGT+AGG - chr4.1:22039088-22039107 None:intergenic 40.0%
GGCAGAGAAGCAAAAGATTA+AGG + chr4.1:22037312-22037331 MS.gene26395:CDS 40.0%
TACGGAAATCAAGCGAATGA+AGG + chr4.1:22038323-22038342 MS.gene26395:CDS 40.0%
TATTCTGTACCTTCTGCAGA+AGG - chr4.1:22037215-22037234 None:intergenic 40.0%
TCCTTAAAGGCCCATATATG+AGG - chr4.1:22038920-22038939 None:intergenic 40.0%
TGGAATACCCTTGTATCCTA+AGG + chr4.1:22039043-22039062 MS.gene26395:CDS 40.0%
TGGATCAAGGTGAAAACACA+TGG - chr4.1:22038054-22038073 None:intergenic 40.0%
TGGGAAGACATAACGTGAAA+CGG - chr4.1:22036969-22036988 None:intergenic 40.0%
TTAAAGGCCCATATATGAGG+GGG - chr4.1:22038917-22038936 None:intergenic 40.0%
TTCCAAGACCAAGAAAACAG+GGG + chr4.1:22036854-22036873 MS.gene26395:CDS 40.0%
TTGAGGATAATCTAGTGCCA+TGG - chr4.1:22037098-22037117 None:intergenic 40.0%
TTGGGACCAAATGTTCATAC+AGG + chr4.1:22039542-22039561 MS.gene26395:intron 40.0%
! AGTGATATTGGTGGGTGATT+GGG + chr4.1:22039524-22039543 MS.gene26395:intron 40.0%
! GTGTTTTACAAGCAACCTTG+TGG - chr4.1:22038356-22038375 None:intergenic 40.0%
! TACTAATCCAAGGCACTAGA+TGG + chr4.1:22038853-22038872 MS.gene26395:CDS 40.0%
!! AAACACAGACTTTGGAGTAG+TGG - chr4.1:22038945-22038964 None:intergenic 40.0%
!! AATGAAGGTATTGACCCACA+AGG + chr4.1:22038338-22038357 MS.gene26395:intron 40.0%
!! ACTCTGGTTTGTTCGAAAAC+GGG + chr4.1:22038877-22038896 MS.gene26395:CDS 40.0%
!! GCATTGTAACGGATGGAATT+CGG + chr4.1:22038770-22038789 MS.gene26395:CDS 40.0%
!!! CAAGAGTTTTTTTCCCAGGA+CGG + chr4.1:22038544-22038563 MS.gene26395:CDS 40.0%
AAGCAGAAAAGTAGGCCTTG+GGG - chr4.1:22037249-22037268 None:intergenic 45.0%
AAGGTTTGCCCCCTCATATA+TGG + chr4.1:22038906-22038925 MS.gene26395:CDS 45.0%
AATAAAGAACAGGTGCCCCA+AGG + chr4.1:22037231-22037250 MS.gene26395:CDS 45.0%
ACACATGCTCCTTCATTCCA+TGG + chr4.1:22036793-22036812 MS.gene26395:CDS 45.0%
AGGTTTGCCCCCTCATATAT+GGG + chr4.1:22038907-22038926 MS.gene26395:CDS 45.0%
ATCACCAGCCCTTCAATGAT+AGG - chr4.1:22039603-22039622 None:intergenic 45.0%
ATGGTGGCAAAACACCAAAG+GGG - chr4.1:22039002-22039021 None:intergenic 45.0%
ATTGAGAGGAAGAGTCCCTT+GGG - chr4.1:22036732-22036751 None:intergenic 45.0%
CAAAGCAGAAAAGTAGGCCT+TGG - chr4.1:22037251-22037270 None:intergenic 45.0%
CAACTTCAGCTACAATGGCA+AGG + chr4.1:22038236-22038255 MS.gene26395:intron 45.0%
CAAGGAGCCATGGTAACAAA+TGG - chr4.1:22036883-22036902 None:intergenic 45.0%
CCCTCATATATGGGCCTTTA+AGG + chr4.1:22038916-22038935 MS.gene26395:CDS 45.0%
CTACAAGAAGCCAACAAGTG+AGG - chr4.1:22038588-22038607 None:intergenic 45.0%
CTCACACCATACAGAGTCAT+GGG - chr4.1:22037160-22037179 None:intergenic 45.0%
CTGGTGATAAGGAAGGACAA+GGG + chr4.1:22039615-22039634 MS.gene26395:intron 45.0%
CTTAAGGGACCTGTATTGTC+AGG + chr4.1:22038269-22038288 MS.gene26395:CDS 45.0%
GAAGCAAAAACAAGGAGCCA+TGG - chr4.1:22036893-22036912 None:intergenic 45.0%
GCTCTGCAAAACACAGACTT+TGG - chr4.1:22038953-22038972 None:intergenic 45.0%
GGATCAATGAGCAGAGAATC+TGG + chr4.1:22039274-22039293 MS.gene26395:CDS 45.0%
GGGAAGACATAACGTGAAAC+GGG - chr4.1:22036968-22036987 None:intergenic 45.0%
GGGCAACCTGTATGAACATT+TGG - chr4.1:22039551-22039570 None:intergenic 45.0%
GTAGTCGAAGATTTCCTGAC+TGG + chr4.1:22038738-22038757 MS.gene26395:CDS 45.0%
GTTCGAAAACGGGATAAGCA+AGG + chr4.1:22038887-22038906 MS.gene26395:CDS 45.0%
TAGTAGACAGAACTGAGGGA+TGG - chr4.1:22039021-22039040 None:intergenic 45.0%
TATTGAGAGGAAGAGTCCCT+TGG - chr4.1:22036733-22036752 None:intergenic 45.0%
TCACACCATACAGAGTCATG+GGG - chr4.1:22037159-22037178 None:intergenic 45.0%
TCACCAGCCCTTCAATGATA+GGG - chr4.1:22039602-22039621 None:intergenic 45.0%
TGCCAGGAGTAGTGTTTACA+TGG + chr4.1:22037291-22037310 MS.gene26395:CDS 45.0%
TGCCATGTAAACACTACTCC+TGG - chr4.1:22037296-22037315 None:intergenic 45.0%
TGGAGTAGTGGCATCCTTAA+AGG - chr4.1:22038933-22038952 None:intergenic 45.0%
TTCTCCCTACATCCTAGTTC+TGG + chr4.1:22037986-22038005 MS.gene26395:CDS 45.0%
TTGGCCAAGGAACCAAATGA+AGG - chr4.1:22036930-22036949 None:intergenic 45.0%
! AATGGCTTCCCCTGTTTTCT+TGG - chr4.1:22036865-22036884 None:intergenic 45.0%
! CAACAACTTTTGGACATGGC+AGG - chr4.1:22036756-22036775 None:intergenic 45.0%
! CTCTCCTTCATTTGGTTCCT+TGG + chr4.1:22036923-22036942 MS.gene26395:CDS 45.0%
! GAGTGATATTGGTGGGTGAT+TGG + chr4.1:22039523-22039542 MS.gene26395:intron 45.0%
! GATGGTGGCAAAACACCAAA+GGG - chr4.1:22039003-22039022 None:intergenic 45.0%
! TCATTGAAGGGCTGGTGATA+AGG + chr4.1:22039604-22039623 MS.gene26395:intron 45.0%
! TTCCCCTGTTTTCTTGGTCT+TGG - chr4.1:22036859-22036878 None:intergenic 45.0%
!! CAAGGCCTACTTTTCTGCTT+TGG + chr4.1:22037249-22037268 MS.gene26395:CDS 45.0%
AGCCTAGAGCCATGGAATGA+AGG - chr4.1:22036805-22036824 None:intergenic 50.0%
AGTCCCCACCATTTCAAAGC+TGG + chr4.1:22037823-22037842 MS.gene26395:CDS 50.0%
ATGGCCGTACAAGGACATTG+AGG - chr4.1:22037852-22037871 None:intergenic 50.0%
ATTGTGAGGAGGGCAAGCAT+TGG - chr4.1:22039471-22039490 None:intergenic 50.0%
CAAGGGACGCATTTCACAGT+CGG + chr4.1:22039632-22039651 MS.gene26395:intron 50.0%
CACACCATACAGAGTCATGG+GGG - chr4.1:22037158-22037177 None:intergenic 50.0%
CATCCTCTGGCAATCTCTCT+GGG - chr4.1:22036988-22037007 None:intergenic 50.0%
CCATGACTCTGTATGGTGTG+AGG + chr4.1:22037158-22037177 MS.gene26395:CDS 50.0%
CCTCACACCATACAGAGTCA+TGG - chr4.1:22037161-22037180 None:intergenic 50.0%
CGAGCAATGTATTCCGTCCT+GGG - chr4.1:22038560-22038579 None:intergenic 50.0%
CTACAATGGCAAGGGATGGA+CGG + chr4.1:22038245-22038264 MS.gene26395:CDS 50.0%
CTACCCTATCATTGAAGGGC+TGG + chr4.1:22039596-22039615 MS.gene26395:intron 50.0%
CTCCTTCATTCCATGGCTCT+AGG + chr4.1:22036800-22036819 MS.gene26395:CDS 50.0%
GAACAAGAAGCCTAGAGCCA+TGG - chr4.1:22036813-22036832 None:intergenic 50.0%
GACTCTGTATGGTGTGAGGA+AGG + chr4.1:22037162-22037181 MS.gene26395:CDS 50.0%
GAGCCCTCAATGTCCTTGTA+CGG + chr4.1:22037845-22037864 MS.gene26395:intron 50.0%
GATAGAAGGATGGCCGTACA+AGG - chr4.1:22037861-22037880 None:intergenic 50.0%
GATGAGGCCTTCTCAAGAGA+TGG + chr4.1:22037474-22037493 MS.gene26395:CDS 50.0%
GCTCGAAGAACCTCACTTGT+TGG + chr4.1:22038575-22038594 MS.gene26395:CDS 50.0%
GCTGGTGATAAGGAAGGACA+AGG + chr4.1:22039614-22039633 MS.gene26395:intron 50.0%
GTAGCTGTACCAAGGAACTG+TGG - chr4.1:22038816-22038835 None:intergenic 50.0%
GTATGGTGTGAGGAAGGCTT+GGG + chr4.1:22037168-22037187 MS.gene26395:CDS 50.0%
TACAATGGCAAGGGATGGAC+GGG + chr4.1:22038246-22038265 MS.gene26395:CDS 50.0%
TAGACAGAACTGAGGGATGG+TGG - chr4.1:22039018-22039037 None:intergenic 50.0%
TCAGCTACAATGGCAAGGGA+TGG + chr4.1:22038241-22038260 MS.gene26395:intron 50.0%
TCATCCTCTGGCAATCTCTC+TGG - chr4.1:22036989-22037008 None:intergenic 50.0%
TCGAGCAATGTATTCCGTCC+TGG - chr4.1:22038561-22038580 None:intergenic 50.0%
TGGCCGTACAAGGACATTGA+GGG - chr4.1:22037851-22037870 None:intergenic 50.0%
TGTATGGTGTGAGGAAGGCT+TGG + chr4.1:22037167-22037186 MS.gene26395:CDS 50.0%
TGTTCCCCCATGACTCTGTA+TGG + chr4.1:22037151-22037170 MS.gene26395:CDS 50.0%
! CAAGGCACTAGATGGTACTC+TGG + chr4.1:22038861-22038880 MS.gene26395:CDS 50.0%
! CAGAGTACCATCTAGTGCCT+TGG - chr4.1:22038863-22038882 None:intergenic 50.0%
! CGGTTTTCTGCGAACCATCT+AGG + chr4.1:22038790-22038809 MS.gene26395:CDS 50.0%
! GGATGGTGGCAAAACACCAA+AGG - chr4.1:22039004-22039023 None:intergenic 50.0%
! GGGGAAGCCATTTGTTACCA+TGG + chr4.1:22036873-22036892 MS.gene26395:CDS 50.0%
! TGAAGGGCTGGTGATAAGGA+AGG + chr4.1:22039608-22039627 MS.gene26395:intron 50.0%
!! GCTCCAGCTTTGAAATGGTG+GGG - chr4.1:22037829-22037848 None:intergenic 50.0%
!! GGCTCCAGCTTTGAAATGGT+GGG - chr4.1:22037830-22037849 None:intergenic 50.0%
!! TGAGGGCTCCAGCTTTGAAA+TGG - chr4.1:22037834-22037853 None:intergenic 50.0%
!! TGGACATGGCAGGTATTGAG+AGG - chr4.1:22036746-22036765 None:intergenic 50.0%
AGGCTTGGGAGTTTGCAAGG+TGG + chr4.1:22037182-22037201 MS.gene26395:CDS 55.0%
CCAAGGAACTGTGGCCTAGA+TGG - chr4.1:22038807-22038826 None:intergenic 55.0%
CCATCTAGGCCACAGTTCCT+TGG + chr4.1:22038804-22038823 MS.gene26395:CDS 55.0%
CTTCCCAGAGAGATTGCCAG+AGG + chr4.1:22036982-22037001 MS.gene26395:CDS 55.0%
CTTGGGAGTTTGCAAGGTGG+TGG + chr4.1:22037185-22037204 MS.gene26395:CDS 55.0%
GGAAGGCTTGGGAGTTTGCA+AGG + chr4.1:22037179-22037198 MS.gene26395:CDS 55.0%
TCCTTGGCCAAGCTTATCGC+TGG + chr4.1:22036939-22036958 MS.gene26395:CDS 55.0%
! CAAGGGATGGACGGGCTTAA+GGG + chr4.1:22038254-22038273 MS.gene26395:CDS 55.0%
!! GGGCTCCAGCTTTGAAATGG+TGG - chr4.1:22037831-22037850 None:intergenic 55.0%
GCAGGGAGCTTGTCATCCTC+TGG - chr4.1:22037001-22037020 None:intergenic 60.0%
GCCAGCGATAAGCTTGGCCA+AGG - chr4.1:22036943-22036962 None:intergenic 60.0%
GGTGGCTTCCCTTCTGCAGA+AGG + chr4.1:22037203-22037222 MS.gene26395:CDS 60.0%
! GCAAGGGATGGACGGGCTTA+AGG + chr4.1:22038253-22038272 MS.gene26395:CDS 60.0%
CGGGACGCCAGCGATAAGCT+TGG - chr4.1:22036949-22036968 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 22036719 22039790 22036719 ID=MS.gene26395
chr4.1 mRNA 22036719 22039790 22036719 ID=MS.gene26395.t1;Parent=MS.gene26395
chr4.1 exon 22036719 22037333 22036719 ID=MS.gene26395.t1.exon1;Parent=MS.gene26395.t1
chr4.1 CDS 22036719 22037333 22036719 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22037429 22037530 22037429 ID=MS.gene26395.t1.exon2;Parent=MS.gene26395.t1
chr4.1 CDS 22037429 22037530 22037429 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22037739 22037861 22037739 ID=MS.gene26395.t1.exon3;Parent=MS.gene26395.t1
chr4.1 CDS 22037739 22037861 22037739 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22037960 22038172 22037960 ID=MS.gene26395.t1.exon4;Parent=MS.gene26395.t1
chr4.1 CDS 22037960 22038172 22037960 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22038245 22038344 22038245 ID=MS.gene26395.t1.exon5;Parent=MS.gene26395.t1
chr4.1 CDS 22038245 22038344 22038245 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22038466 22038638 22038466 ID=MS.gene26395.t1.exon6;Parent=MS.gene26395.t1
chr4.1 CDS 22038466 22038638 22038466 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22038717 22039064 22038717 ID=MS.gene26395.t1.exon7;Parent=MS.gene26395.t1
chr4.1 CDS 22038717 22039064 22038717 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22039174 22039533 22039174 ID=MS.gene26395.t1.exon8;Parent=MS.gene26395.t1
chr4.1 CDS 22039174 22039533 22039174 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
chr4.1 exon 22039779 22039790 22039779 ID=MS.gene26395.t1.exon9;Parent=MS.gene26395.t1
chr4.1 CDS 22039779 22039790 22039779 ID=cds.MS.gene26395.t1;Parent=MS.gene26395.t1
Gene Sequence

>MS.gene26395

ATGGAGGTAACCCAAGGGACTCTTCCTCTCAATACCTGCCATGTCCAAAAGTTGTTGCTTATCATCAATAGGTTACACATGCTCCTTCATTCCATGGCTCTAGGCTTCTTGTTCTATTACAGGGTGTGCTTTCTTTTCCAAGACCAAGAAAACAGGGGAAGCCATTTGTTACCATGGCTCCTTGTTTTTGCTTCAGAAATCATTCTCTCCTTCATTTGGTTCCTTGGCCAAGCTTATCGCTGGCGTCCCGTTTCACGTTATGTCTTCCCAGAGAGATTGCCAGAGGATGACAAGCTCCCTGCTGTTGATGTGTTCATATGCACTGCAGATCCAATTAAGGAACCCACTTTAGAAGTGATGAACACTGTTTTATCATCCATGGCACTAGATTATCCTCAACAGAAGATTCATGTGTATCTTTCAGATGATGGGTGTTCCCCCATGACTCTGTATGGTGTGAGGAAGGCTTGGGAGTTTGCAAGGTGGTGGCTTCCCTTCTGCAGAAGGTACAGAATAAAGAACAGGTGCCCCAAGGCCTACTTTTCTGCTTTGGAGAGTGATAATAATGATTTTGCCAGGAGTAGTGTTTACATGGCAGAGAAGCAAAAGATTAAGGTTGAATATGATATGATTGTTTTTATTGAATTCCTTTAGATTGCAGAACATACATATAGAAACTTTGCTTTCTGATGAAAGTCAACAATTTGCAGAGAAAGTATGAGGCTTTTAAAGAAGAGATAGAGACATTCAGAAAAGATGAGGCCTTCTCAAGAGATGGTATTACTTTTGGAGATCATTCATCAGTCATTGAGGTATAATAGCACGTCATTGTAAATATGTAAACATGTTTGAAGAATAATAACAACTGTACCTGACAGCAATAATTTGAGTTTCTAGTGTGCTCAACAAATTACAAATTTGCGACAACAAAAATTAGTCAATGCTCATCTGCAACTATATATGTGCTAAATATACGCCATCTGCACTTTATACTAGACACATTTTATCTGAATTTTGCAGGTGATGCAAGAAGATATCATTGATGATGTGGATAATGTCAAAATGCCACAACTTGTCTATGTTTCGAGAGAGAGAAAGTCTTCTAGTCCCCACCATTTCAAAGCTGGAGCCCTCAATGTCCTTGTACGGCCATCCTTCTATCTTCCAAAGTATATATACAAAACTTGCTTTACAAACACAGCAAATGTAATGATTTCATGTCTTGCATAATAATTTTTCAGCTTCGTGTATCTGCTGTGATGAGTAATTCTCCCTACATCCTAGTTCTGGATTGTGACATGTTCTGCAACTATCCAAATTCAGCTCGATATGCCATGTGTTTTCACCTTGATCCAAAGATATCATCCTCCTTGTCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAAAGACATCTATGACAGTCAGCTGAGATCATTATTTACTGTAAGCACATAAAAACTGATCCTTGAGATTAAATCTTTGCAGTATTAAACTAAATCTTTTGAACAACTTCAGCTACAATGGCAAGGGATGGACGGGCTTAAGGGACCTGTATTGTCAGGTACATGCTTTTATATGAAAAGGGTATCATTGTACGGAAATCAAGCGAATGAAGGTATTGACCCACAAGGTTGCTTGTAAAACACTAGATTGATATATTTTAACAACATTGACATATGAATATAGCCTTTATGTTATGAACTAACATACTTTACTGTTCTGAGTTTTAAATTTAGGAGGGACTGACCTGCTGCAACTTCGAGAATATTTTGGTTCATCGAATGAATTCATCAAATCACTTGCTCAAAACTACACAAGAGTTTTTTTCCCAGGACGGAATACATTGCTCGAAGAACCTCACTTGTTGGCTTCTTGTAGATATGAAACTGGCACTAAATGGGGACAAGATGTAAGTAAACTTCAAAACTCAGATATTACATCAAAATTTATACAGAAAAACTCAATGTATAATTTTGAACTGTTTCAGGTAGGTTTCTTATACGATAGTGTAGTCGAAGATTTCCTGACTGGATTTATCTTGCATTGTAACGGATGGAATTCGGTTTTCTGCGAACCATCTAGGCCACAGTTCCTTGGTACAGCTACGACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACTCTGGTTTGTTCGAAAACGGGATAAGCAAGGTTTGCCCCCTCATATATGGGCCTTTAAGGATGCCACTACTCCAAAGTCTGTGTTTTGCAGAGCTCACATATTTCCCTCTTTATTGTTTGCCCCTTTGGTGTTTTGCCACCATCCCTCAGTTCTGTCTACTAAATGGAATACCCTTGTATCCTAAGGTAACACAGATATTAAACTTCCTACCGTTTTCACTTCAATCTCAGATTCTTTTGTATATTCACGTCAAACGCTAATATACACTCTTTTCTTGAACATTTTTTTTGACAGGTTTCGGATCCATATTTTATCATCTTTTTATTCATATTTTTATCATCTCTTTCAAAACATTTACTAGAAGTCTTCTTAACTGGAGGAACACTACATAAATGGATCAATGAGCAGAGAATCTGGATGATGAAATCAACTACTTGCAATCTATATGGTTGTTTGGATGCTTTACTGAAGAAAGTTGGAATAAGACAAGCTAATTTCTTACCTACTAATAAAGCAGAGGATGATGAACAAACTCTGCTATACCAAAATGATAAATACGACTTCCGAGCATCGAACATTTTTATAGTTCCAATGCTTGCCCTCCTCACAATCAACATATTTTGTCTGGTAGTTGGAGTTTATAGAGTGATATTGGTGGGTGATTGGGACCAAATGTTCATACAGGTTGCCCTTGCAAGTTTTATCATTACAATAAACTACCCTATCATTGAAGGGCTGGTGATAAGGAAGGACAAGGGACGCATTTCACAGTCGGTAGCTATATATGTCATCTTGTTTACTATGATTTTTTTGACATTTTCTAAATTTTTATAAATTAAGAAATGCATAATAATATGATCTACAAGCGATGTACTGTAATATATTTCTTGTGATTTTAGAATGCCATTTAA
Protein sequence

>MS.gene26395.t1

MEVTQGTLPLNTCHVQKLLLIINRLHMLLHSMALGFLFYYRVCFLFQDQENRGSHLLPWLLVFASEIILSFIWFLGQAYRWRPVSRYVFPERLPEDDKLPAVDVFICTADPIKEPTLEVMNTVLSSMALDYPQQKIHVYLSDDGCSPMTLYGVRKAWEFARWWLPFCRRYRIKNRCPKAYFSALESDNNDFARSSVYMAEKQKIKRKYEAFKEEIETFRKDEAFSRDGITFGDHSSVIEVMQEDIIDDVDNVKMPQLVYVSRERKSSSPHHFKAGALNVLLRVSAVMSNSPYILVLDCDMFCNYPNSARYAMCFHLDPKISSSLSFVQFPQKFHNISKKDIYDSQLRSLFTLQWQGMDGLKGPVLSGTCFYMKRVSLYGNQANEGGTDLLQLREYFGSSNEFIKSLAQNYTRVFFPGRNTLLEEPHLLASCRYETGTKWGQDVGFLYDSVVEDFLTGFILHCNGWNSVFCEPSRPQFLGTATTNLNDVLIQGTRWYSGLFENGISKVCPLIYGPLRMPLLQSLCFAELTYFPLYCLPLWCFATIPQFCLLNGIPLYPKVSDPYFIIFLFIFLSSLSKHLLEVFLTGGTLHKWINEQRIWMMKSTTCNLYGCLDALLKKVGIRQANFLPTNKAEDDEQTLLYQNDKYDFRASNIFIVPMLALLTINIFCLVVGVYRVILNAI