AlfalfaGEDB | MS.gene050354

M. sativa cultivar XinJiangDaYe / MS.gene050354

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050354.t1	XP_003591381.1	94.6	37	2	0	33	69	191	227	1.80E-10	75.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050354.t1	Q9FL26	59.0	39	15	1	33	70	216	254	6.5e-06	51.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050354.t1	G7ICW1	94.6	37	2	0	33	69	191	227	1.3e-10	75.1

TFs/TRs:

Gene ID	Type	Classification
MS.gene050354.t1	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene050354	-0.816024	6.84E-52	-1.69E-46
MS.gene04937	MS.gene050354	-0.817721	2.85E-52	-1.69E-46
MS.gene049627	MS.gene050354	-0.805885	1.08E-49	-1.69E-46
MS.gene050353	MS.gene050354	0.93276	5.25E-95	-1.69E-46
MS.gene050354	MS.gene051333	-0.815677	8.18E-52	-1.69E-46
MS.gene050354	MS.gene05141	0.817841	2.67E-52	-1.69E-46
MS.gene050354	MS.gene051694	-0.810226	1.28E-50	-1.69E-46
MS.gene050354	MS.gene054435	0.804131	2.50E-49	-1.69E-46
MS.gene050354	MS.gene055154	0.802007	6.88E-49	-1.69E-46
MS.gene050354	MS.gene058840	0.815196	1.05E-51	-1.69E-46
MS.gene050354	MS.gene06074	0.813502	2.48E-51	-1.69E-46
MS.gene050354	MS.gene06332	-0.812018	5.24E-51	-1.69E-46
MS.gene050354	MS.gene067332	-0.804632	1.97E-49	-1.69E-46
MS.gene050354	MS.gene067979	0.805639	1.21E-49	-1.69E-46
MS.gene050354	MS.gene071930	-0.801251	9.83E-49	-1.69E-46
MS.gene050354	MS.gene072518	0.819667	1.03E-52	-1.69E-46
MS.gene050354	MS.gene072962	-0.827801	1.28E-54	-1.69E-46
MS.gene050354	MS.gene072966	-0.804934	1.70E-49	-1.69E-46
MS.gene050354	MS.gene07321	0.931889	1.94E-94	-1.69E-46
MS.gene050354	MS.gene08520	-0.806889	6.61E-50	-1.69E-46
MS.gene050354	MS.gene20603	0.814245	1.70E-51	-1.69E-46
MS.gene050354	MS.gene20870	0.929783	4.23E-93	-1.69E-46
MS.gene050354	MS.gene22484	-0.804215	2.40E-49	-1.69E-46
MS.gene050354	MS.gene24474	-0.810865	9.32E-51	-1.69E-46
MS.gene050354	MS.gene26395	0.834643	2.66E-56	-1.69E-46
MS.gene050354	MS.gene27827	0.815466	9.11E-52	-1.69E-46
MS.gene050354	MS.gene28555	0.842525	2.45E-58	-1.69E-46
MS.gene050354	MS.gene29460	-0.803564	3.28E-49	-1.69E-46
MS.gene050354	MS.gene35043	-0.838836	2.27E-57	-1.69E-46
MS.gene050354	MS.gene35270	0.814228	1.71E-51	-1.69E-46
MS.gene050354	MS.gene37321	0.808452	3.08E-50	-1.69E-46
MS.gene050354	MS.gene37678	0.817683	2.90E-52	-1.69E-46
MS.gene050354	MS.gene38097	0.807691	4.47E-50	-1.69E-46
MS.gene050354	MS.gene40322	0.833574	4.93E-56	-1.69E-46
MS.gene050354	MS.gene40481	0.817512	3.17E-52	-1.69E-46
MS.gene050354	MS.gene40958	-0.817655	2.95E-52	-1.69E-46
MS.gene050354	MS.gene46058	0.802492	5.47E-49	-1.69E-46
MS.gene050354	MS.gene46895	-0.815662	8.24E-52	-1.69E-46
MS.gene050354	MS.gene49104	-0.80074	1.25E-48	-1.69E-46
MS.gene050354	MS.gene50720	-0.800775	1.23E-48	-1.69E-46
MS.gene050354	MS.gene55801	0.81509	1.10E-51	-1.69E-46
MS.gene050354	MS.gene57131	0.800649	1.31E-48	-1.69E-46
MS.gene050354	MS.gene59273	0.847467	1.14E-59	-1.69E-46
MS.gene050354	MS.gene62691	-0.81371	2.23E-51	-1.69E-46
MS.gene050354	MS.gene63069	-0.819948	8.88E-53	-1.69E-46
MS.gene050354	MS.gene63502	0.801773	7.69E-49	-1.69E-46
MS.gene050354	MS.gene68851	0.800638	1.31E-48	-1.69E-46
MS.gene050354	MS.gene70393	-0.842441	2.58E-58	-1.69E-46
MS.gene050354	MS.gene72186	0.80344	3.48E-49	-1.69E-46
MS.gene050354	MS.gene75310	0.823685	1.21E-53	-1.69E-46
MS.gene050354	MS.gene75768	-0.822651	2.11E-53	-1.69E-46
MS.gene050354	MS.gene75806	-0.800143	1.66E-48	-1.69E-46
MS.gene050354	MS.gene78958	0.812711	3.69E-51	-1.69E-46
MS.gene050354	MS.gene80667	0.828933	6.82E-55	-1.69E-46
MS.gene050354	MS.gene81971	-0.800241	1.58E-48	-1.69E-46
MS.gene050354	MS.gene82008	-0.801235	9.91E-49	-1.69E-46
MS.gene050354	MS.gene82958	0.800953	1.13E-48	-1.69E-46
MS.gene050354	MS.gene83789	-0.812369	4.39E-51	-1.69E-46
MS.gene050354	MS.gene88914	0.816528	5.28E-52	-1.69E-46
MS.gene050354	MS.gene89218	-0.81216	4.88E-51	-1.69E-46
MS.gene050354	MS.gene90192	0.800443	1.44E-48	-1.69E-46
MS.gene050354	MS.gene91977	0.802954	4.39E-49	-1.69E-46
MS.gene050354	MS.gene94262	0.80318	3.94E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050354.t1	MTR_1g086790	94.595	37	2	0	33	69	191	227	1.43e-18	77.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TACAGTTTACTAATGATTTT+GGG	-	11033:1512-1531	None:intergenic	20.0%
!!!	TTACAGTTTACTAATGATTT+TGG	-	11033:1513-1532	None:intergenic	20.0%
!!	AATTTTTATGAGTAGTACCT+TGG	-	11033:1445-1464	None:intergenic	25.0%
	ATTGTAGTCACAACATATGA+AGG	+	11033:1642-1661	MS.gene050354:CDS	30.0%
	CTATGTGTTTATGTTTGTGT+AGG	+	11033:1546-1565	MS.gene050354:intron	30.0%
	ATGAGTAGTACCTTGGAAAA+GGG	-	11033:1438-1457	None:intergenic	35.0%
	TATGAGTAGTACCTTGGAAA+AGG	-	11033:1439-1458	None:intergenic	35.0%
	TATGTTGTGACTACAATGCT+TGG	-	11033:1639-1658	None:intergenic	35.0%
!	TCAAAAATAGCCCTTTTCCA+AGG	+	11033:1425-1444	MS.gene050354:CDS	35.0%
!!	TCTTTGAGTTCACACTCTTT+TGG	+	11033:1464-1483	MS.gene050354:intron	35.0%
	TGTAATGTCAAGAAACCGTG+TGG	+	11033:1596-1615	MS.gene050354:CDS	40.0%
	TTTGACCGTACTTTCTCCAT+CGG	-	11033:1399-1418	None:intergenic	40.0%
	CAGTGTAAGAACGTTCCACA+CGG	-	11033:1614-1633	None:intergenic	45.0%
	CTTGACATTACATGCAGCAG+TGG	-	11033:1588-1607	None:intergenic	45.0%
	GGATACCGATGGAGAAAGTA+CGG	+	11033:1391-1410	MS.gene050354:CDS	45.0%
	TTGGACTTGGATGTGTGTGT+TGG	-	11033:1668-1687	None:intergenic	45.0%
!	ATTTGAAACTCCGGCAAAGG+CGG	-	11033:1703-1722	None:intergenic	45.0%
!	GGTATTTGAAACTCCGGCAA+AGG	-	11033:1706-1725	None:intergenic	45.0%
!	GGTGGTGGTATTTGAAACTC+CGG	-	11033:1712-1731	None:intergenic	45.0%
	AAATCCACCCGAGACTACAC+CGG	-	11033:1737-1756	None:intergenic	50.0%
	GAACGGGACATAGTTGGACT+TGG	-	11033:1681-1700	None:intergenic	50.0%
	TTTCAAATACCACCACCCGC+CGG	+	11033:1715-1734	MS.gene050354:CDS	50.0%
	AAACTCCGGCAAAGGCGGAA+CGG	-	11033:1698-1717	None:intergenic	55.0%
	AAGGCGGAACGGGACATAGT+TGG	-	11033:1687-1706	None:intergenic	55.0%
	AACTCCGGCAAAGGCGGAAC+GGG	-	11033:1697-1716	None:intergenic	60.0%
	ATGTCCCGTTCCGCCTTTGC+CGG	+	11033:1690-1709	MS.gene050354:CDS	60.0%
	ACCACCCGCCGGTGTAGTCT+CGG	+	11033:1726-1745	MS.gene050354:CDS	65.0%
	TCCACCCGAGACTACACCGG+CGG	-	11033:1734-1753	None:intergenic	65.0%
	CCACCCGAGACTACACCGGC+GGG	-	11033:1733-1752	None:intergenic	70.0%
	CCACCCGCCGGTGTAGTCTC+GGG	+	11033:1727-1746	MS.gene050354:CDS	70.0%
	GAGACTACACCGGCGGGTGG+TGG	-	11033:1727-1746	None:intergenic	70.0%
	CCCGAGACTACACCGGCGGG+TGG	-	11033:1730-1749	None:intergenic	75.0%
	CCCGCCGGTGTAGTCTCGGG+TGG	+	11033:1730-1749	MS.gene050354:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
11033	gene	1389	1767	1389	ID=MS.gene050354
11033	mRNA	1389	1767	1389	ID=MS.gene050354.t1;Parent=MS.gene050354
11033	exon	1389	1446	1389	ID=MS.gene050354.t1.exon1;Parent=MS.gene050354.t1
11033	CDS	1389	1446	1389	ID=cds.MS.gene050354.t1;Parent=MS.gene050354.t1
11033	exon	1568	1767	1568	ID=MS.gene050354.t1.exon2;Parent=MS.gene050354.t1
11033	CDS	1568	1767	1568	ID=cds.MS.gene050354.t1;Parent=MS.gene050354.t1

Gene Sequence	>MS.gene050354 ATGGATACCGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAATAGCCCTTTTCCAAGGTACTACTCATAAAAATTCTTTGAGTTCACACTCTTTTGGTTTAATTAATTTAGATTTTAGACCCAAAATCATTAGTAAACTGTAACATTTGTAATATGCTATGTGTTTATGTTTGTGTAGGAGCTACTATCGTTGCACCACTGCTGCATGTAATGTCAAGAAACCGTGTGGAACGTTCTTACACTGATCCAAGCATTGTAGTCACAACATATGAAGGCCAACACACACATCCAAGTCCAACTATGTCCCGTTCCGCCTTTGCCGGAGTTTCAAATACCACCACCCGCCGGTGTAGTCTCGGGTGGATTTCCAGCTACTAA
Protein sequence	>MS.gene050354.t1 MDTDGESTVKKLSKIALFQGATIVAPLLHVMSRNRVERSYTDPSIVVTTYEGQHTHPSPTMSRSAFAGVSNTTTRRCSLGWISSY