Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26398.t1 | XP_003627885.2 | 78.8 | 132 | 22 | 1 | 98 | 223 | 204 | 335 | 1.80E-42 | 183.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26398.t1 | Q9XE58 | 43.6 | 117 | 58 | 2 | 207 | 322 | 340 | 449 | 1.6e-18 | 95.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26398.t1 | G7LGS1 | 78.8 | 132 | 22 | 1 | 98 | 223 | 204 | 335 | 1.3e-42 | 183.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26398.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053040 | MS.gene26398 | 0.837371 | 5.41E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene26398 | 0.817295 | 3.55E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26398.t1 | MTR_8g039560 | 86.364 | 132 | 12 | 1 | 98 | 223 | 204 | 335 | 3.73e-67 | 218 |
| MS.gene26398.t1 | MTR_2g097410 | 58.242 | 182 | 63 | 4 | 224 | 405 | 326 | 494 | 2.23e-53 | 190 |
| MS.gene26398.t1 | MTR_8g098230 | 91.089 | 101 | 7 | 2 | 1 | 100 | 1 | 100 | 2.64e-51 | 186 |
| MS.gene26398.t1 | MTR_8g098230 | 91.089 | 101 | 7 | 2 | 1 | 100 | 1 | 100 | 2.93e-51 | 186 |
| MS.gene26398.t1 | MTR_4g064150 | 53.398 | 103 | 43 | 2 | 225 | 324 | 316 | 416 | 4.75e-28 | 117 |
| MS.gene26398.t1 | MTR_3g087300 | 79.412 | 68 | 14 | 0 | 221 | 288 | 141 | 208 | 1.73e-26 | 106 |
| MS.gene26398.t1 | MTR_4g064160 | 58.511 | 94 | 37 | 1 | 231 | 322 | 276 | 369 | 1.55e-25 | 110 |
| MS.gene26398.t1 | MTR_7g062120 | 64.865 | 74 | 26 | 0 | 251 | 324 | 354 | 427 | 6.18e-25 | 108 |
| MS.gene26398.t1 | MTR_4g064120 | 64.789 | 71 | 25 | 0 | 250 | 320 | 235 | 305 | 5.24e-24 | 105 |
| MS.gene26398.t1 | MTR_4g064180 | 62.857 | 70 | 26 | 0 | 250 | 319 | 235 | 304 | 1.48e-22 | 100 |
| MS.gene26398.t1 | MTR_2g097390 | 51.064 | 94 | 41 | 1 | 240 | 333 | 246 | 334 | 1.36e-21 | 97.8 |
| MS.gene26398.t1 | MTR_2g097350 | 51.765 | 85 | 41 | 0 | 240 | 324 | 245 | 329 | 9.66e-21 | 95.5 |
| MS.gene26398.t1 | MTR_2g097310 | 59.420 | 69 | 25 | 1 | 259 | 324 | 259 | 327 | 1.55e-19 | 91.7 |
| MS.gene26398.t1 | MTR_2g097463 | 36.709 | 158 | 77 | 5 | 186 | 320 | 184 | 341 | 3.00e-17 | 84.7 |
| MS.gene26398.t1 | MTR_4g064200 | 64.286 | 56 | 20 | 0 | 263 | 318 | 278 | 333 | 4.56e-16 | 80.9 |
| MS.gene26398.t1 | MTR_2g097473 | 34.868 | 152 | 79 | 5 | 186 | 320 | 192 | 340 | 1.83e-15 | 79.0 |
| MS.gene26398.t1 | MTR_2g026080 | 91.892 | 37 | 3 | 0 | 392 | 428 | 212 | 248 | 4.59e-15 | 77.0 |
| MS.gene26398.t1 | MTR_2g097467 | 50.633 | 79 | 32 | 2 | 249 | 320 | 262 | 340 | 7.13e-15 | 77.4 |
| MS.gene26398.t1 | MTR_4g133620 | 84.615 | 39 | 6 | 0 | 392 | 430 | 209 | 247 | 1.08e-14 | 75.9 |
| MS.gene26398.t1 | MTR_8g104200 | 44.048 | 84 | 43 | 1 | 21 | 100 | 46 | 129 | 9.73e-14 | 73.9 |
| MS.gene26398.t1 | MTR_7g051910 | 48.529 | 68 | 32 | 1 | 366 | 430 | 177 | 244 | 2.89e-11 | 65.5 |
| MS.gene26398.t1 | MTR_2g097380 | 57.778 | 45 | 19 | 0 | 274 | 318 | 229 | 273 | 6.82e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26398.t1 | AT1G07530 | 43.590 | 117 | 58 | 2 | 207 | 322 | 340 | 449 | 2.97e-22 | 100 |
| MS.gene26398.t1 | AT1G63640 | 50.000 | 80 | 40 | 0 | 21 | 100 | 45 | 124 | 7.44e-21 | 96.3 |
| MS.gene26398.t1 | AT1G63640 | 50.000 | 80 | 40 | 0 | 21 | 100 | 45 | 124 | 7.44e-21 | 96.3 |
| MS.gene26398.t1 | AT1G63640 | 50.000 | 80 | 40 | 0 | 21 | 100 | 45 | 124 | 7.56e-21 | 96.3 |
| MS.gene26398.t1 | AT1G63640 | 50.000 | 80 | 40 | 0 | 21 | 100 | 45 | 124 | 7.58e-21 | 96.3 |
| MS.gene26398.t1 | AT1G63640 | 50.000 | 80 | 40 | 0 | 21 | 100 | 35 | 114 | 7.61e-21 | 96.3 |
| MS.gene26398.t1 | AT1G07520 | 59.259 | 81 | 28 | 2 | 251 | 331 | 304 | 379 | 2.28e-20 | 94.4 |
| MS.gene26398.t1 | AT1G07520 | 59.259 | 81 | 28 | 2 | 251 | 331 | 303 | 378 | 2.32e-20 | 94.4 |
| MS.gene26398.t1 | AT1G07520 | 59.259 | 81 | 28 | 2 | 251 | 331 | 139 | 214 | 2.41e-20 | 94.0 |
| MS.gene26398.t1 | AT1G07520 | 59.259 | 81 | 28 | 2 | 251 | 331 | 139 | 214 | 2.41e-20 | 94.0 |
| MS.gene26398.t1 | AT2G37650 | 60.294 | 68 | 27 | 0 | 257 | 324 | 335 | 402 | 1.08e-18 | 89.4 |
| MS.gene26398.t1 | AT2G37650 | 60.294 | 68 | 27 | 0 | 257 | 324 | 323 | 390 | 1.17e-18 | 89.0 |
| MS.gene26398.t1 | AT2G29060 | 54.054 | 74 | 34 | 0 | 249 | 322 | 264 | 337 | 1.41e-18 | 89.0 |
| MS.gene26398.t1 | AT2G29060 | 54.054 | 74 | 34 | 0 | 249 | 322 | 301 | 374 | 1.42e-18 | 89.0 |
| MS.gene26398.t1 | AT1G08315 | 49.074 | 108 | 46 | 2 | 98 | 196 | 204 | 311 | 6.57e-18 | 84.7 |
| MS.gene26398.t1 | AT5G41310 | 53.947 | 76 | 31 | 2 | 21 | 94 | 46 | 119 | 8.06e-18 | 86.7 |
| MS.gene26398.t1 | AT2G29065 | 59.420 | 69 | 26 | 1 | 263 | 331 | 246 | 312 | 5.51e-16 | 80.9 |
| MS.gene26398.t1 | AT3G46600 | 37.500 | 128 | 68 | 4 | 219 | 337 | 132 | 256 | 2.40e-15 | 78.6 |
| MS.gene26398.t1 | AT3G46600 | 37.288 | 118 | 63 | 3 | 228 | 337 | 174 | 288 | 3.08e-15 | 78.2 |
| MS.gene26398.t1 | AT5G59450 | 40.000 | 105 | 55 | 2 | 216 | 320 | 182 | 278 | 9.40e-15 | 77.0 |
| MS.gene26398.t1 | AT5G47530 | 77.778 | 36 | 8 | 0 | 393 | 428 | 211 | 246 | 7.84e-12 | 67.0 |
| MS.gene26398.t1 | AT3G25290 | 75.000 | 36 | 9 | 0 | 393 | 428 | 220 | 255 | 8.90e-12 | 67.0 |
| MS.gene26398.t1 | AT3G25290 | 75.000 | 36 | 9 | 0 | 393 | 428 | 220 | 255 | 8.90e-12 | 67.0 |
| MS.gene26398.t1 | AT3G46600 | 42.500 | 80 | 38 | 1 | 266 | 337 | 1 | 80 | 9.49e-12 | 66.6 |
| MS.gene26398.t1 | AT4G17280 | 75.000 | 36 | 9 | 0 | 393 | 428 | 219 | 254 | 1.76e-11 | 66.2 |
| MS.gene26398.t1 | AT5G35735 | 71.795 | 39 | 9 | 1 | 392 | 430 | 210 | 246 | 3.05e-11 | 65.5 |
| MS.gene26398.t1 | AT4G12980 | 69.444 | 36 | 11 | 0 | 393 | 428 | 221 | 256 | 3.40e-11 | 65.1 |
Find 120 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGTATTATGTACCATTT+TGG | 0.146642 | 4.1:+22088336 | MS.gene26398:CDS |
| ATGAATTGTTGAAGCAAATT+AGG | 0.223365 | 4.1:+22091113 | MS.gene26398:CDS |
| GTACGACTGTGCAGGAATTT+TGG | 0.228907 | 4.1:+22091439 | MS.gene26398:intron |
| TCTGGTGGCCTTGGATGAAC+TGG | 0.240207 | 4.1:+22088610 | MS.gene26398:CDS |
| GATGAGTGTCGAAAGGTTTC+TGG | 0.253174 | 4.1:+22088592 | MS.gene26398:CDS |
| GAGGCGTTTAAGAATGTTTC+TGG | 0.264257 | 4.1:+22089618 | MS.gene26398:CDS |
| TTCTTCCTCAGAAATTTCTA+AGG | 0.279408 | 4.1:-22088290 | None:intergenic |
| AAATTTCTGAGGAAGAATTA+AGG | 0.283238 | 4.1:+22088296 | MS.gene26398:CDS |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.295116 | 4.1:+22091133 | MS.gene26398:CDS |
| CAGTGACTTCTATCAAAATT+AGG | 0.302668 | 4.1:+22091494 | MS.gene26398:CDS |
| TCTAAGGGCATATTAAAGTT+AGG | 0.338119 | 4.1:-22088274 | None:intergenic |
| ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 4.1:+22089798 | MS.gene26398:CDS |
| GCATCTCTGATATAGGTTGC+TGG | 0.350294 | 4.1:+22089579 | MS.gene26398:intron |
| AGGAACCAGTTTGTCCAAAA+TGG | 0.352229 | 4.1:-22088350 | None:intergenic |
| TACCATCACTGTAGTTTGAT+TGG | 0.359165 | 4.1:-22092024 | None:intergenic |
| CTTGGATGAACTGGGATTAT+CGG | 0.369631 | 4.1:+22088619 | MS.gene26398:CDS |
| ATCGAGCATGCGGTGGGAAC+AGG | 0.373235 | 4.1:+22088090 | None:intergenic |
| CGAAAGGTTTCTGGTGGCCT+TGG | 0.381864 | 4.1:+22088601 | MS.gene26398:CDS |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 4.1:+22091045 | MS.gene26398:CDS |
| AATTTCTGAGGAAGAATTAA+GGG | 0.400000 | 4.1:+22088297 | MS.gene26398:CDS |
| TTTAAGAATGTTTCTGGTGT+TGG | 0.404185 | 4.1:+22089624 | MS.gene26398:CDS |
| CACGGTGATGTTTGTAATCA+TGG | 0.407379 | 4.1:+22089885 | MS.gene26398:CDS |
| CGCGTTGGCGTTTGGTGCCA+TGG | 0.410736 | 4.1:+22089770 | MS.gene26398:CDS |
| ACCTTTCAGCACTACAACTA+AGG | 0.420817 | 4.1:-22091534 | None:intergenic |
| TCAAATATGCAGACCTTGCT+TGG | 0.433909 | 4.1:+22092463 | MS.gene26398:CDS |
| GTAAGAGACGCGTTGGCGTT+TGG | 0.441043 | 4.1:+22089762 | MS.gene26398:CDS |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 4.1:+22091035 | MS.gene26398:CDS |
| TGTTTCTGGTGTTGGAGTGC+TGG | 0.453944 | 4.1:+22089632 | MS.gene26398:CDS |
| TAAAGATAAAGGAAGTGTTA+AGG | 0.455209 | 4.1:+22089809 | MS.gene26398:CDS |
| TTGGATGAACTGGGATTATC+GGG | 0.455960 | 4.1:+22088620 | MS.gene26398:CDS |
| CTGGTGGCCTTGGATGAACT+GGG | 0.456748 | 4.1:+22088611 | MS.gene26398:CDS |
| GTCCAAAATGGTACATAATA+CGG | 0.457118 | 4.1:-22088338 | None:intergenic |
| TCCAGCAACACCAACTATAT+AGG | 0.465181 | 4.1:-22092516 | None:intergenic |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 4.1:+22090980 | MS.gene26398:CDS |
| TGGCAGCGTTGGTAATCATT+CGG | 0.469940 | 4.1:+22091468 | MS.gene26398:CDS |
| CAAACTGGTTCCTGGTTCGC+TGG | 0.475497 | 4.1:+22088360 | MS.gene26398:CDS |
| CGCTTACACCTCTGATAACA+TGG | 0.478669 | 4.1:+22088236 | MS.gene26398:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 4.1:+22091017 | MS.gene26398:CDS |
| TATATAGGAAGCTGATTGGC+AGG | 0.496134 | 4.1:-22092501 | None:intergenic |
| TTTGGTAATATTGGCAGCGT+TGG | 0.496632 | 4.1:+22091457 | MS.gene26398:CDS |
| TTGGCGTTTGGTGCCATGGA+TGG | 0.501029 | 4.1:+22089774 | MS.gene26398:CDS |
| AAGTGTTAAGGAGCAGAGTA+AGG | 0.501873 | 4.1:+22089821 | MS.gene26398:CDS |
| GGGATTTGAATTGTCAGAGC+TGG | 0.502158 | 4.1:+22088640 | MS.gene26398:CDS |
| ACAATTCATTAGCAGTCCTA+TGG | 0.503197 | 4.1:-22091099 | None:intergenic |
| CAACTATATAGGAAGCTGAT+TGG | 0.505302 | 4.1:-22092505 | None:intergenic |
| CCTACTACCTCCAGCGAACC+AGG | 0.505351 | 4.1:-22088370 | None:intergenic |
| GCTGATTGGCAGGTAACATA+AGG | 0.507070 | 4.1:-22092491 | None:intergenic |
| TGTGGTGGAGATGTGGTGGC+TGG | 0.510838 | 4.1:+22089735 | MS.gene26398:CDS |
| GAGTGCTGAATGCAGTGAGC+TGG | 0.512499 | 4.1:+22092391 | MS.gene26398:CDS |
| CTGGTTCGAGTACGAGGACG+AGG | 0.519631 | 4.1:+22089676 | MS.gene26398:CDS |
| TCTTCCTCAGAAATTTCTAA+GGG | 0.522851 | 4.1:-22088289 | None:intergenic |
| AAGAATTAAGGGCATGCTTG+AGG | 0.524021 | 4.1:+22088308 | MS.gene26398:CDS |
| AGAATTAAGGGCATGCTTGA+GGG | 0.524459 | 4.1:+22088309 | MS.gene26398:CDS |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 4.1:+22091027 | MS.gene26398:CDS |
| GTCGTTGTGTGCTGAACAAA+AGG | 0.533497 | 4.1:+22090934 | MS.gene26398:CDS |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 4.1:+22091153 | MS.gene26398:CDS |
| TGAATTGTCAGAGCTGGAGC+AGG | 0.536848 | 4.1:+22088646 | MS.gene26398:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 4.1:-22091148 | None:intergenic |
| GAAGCGCGCATGGTTGGTGC+TGG | 0.542207 | 4.1:+22091199 | MS.gene26398:CDS |
| AACATCAGCAATTCCATCCA+TGG | 0.543264 | 4.1:-22089787 | None:intergenic |
| GAGCATGCGGTGGGAACAGG+AGG | 0.545943 | 4.1:+22088093 | None:intergenic |
| AGTGTGAATCAAATTGAAGA+AGG | 0.548871 | 4.1:+22088118 | MS.gene26398:CDS |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 4.1:-22091060 | None:intergenic |
| TGTGATTGCAAGGTACTTGA+AGG | 0.556632 | 4.1:+22092437 | MS.gene26398:CDS |
| GCGATTGAAGCGCGCATGGT+TGG | 0.557291 | 4.1:+22091193 | MS.gene26398:CDS |
| TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 4.1:+22089728 | MS.gene26398:CDS |
| AGAAACCTTTCGACACTCAT+CGG | 0.560922 | 4.1:-22088590 | None:intergenic |
| CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 4.1:+22089720 | MS.gene26398:CDS |
| CTGTGTCTGCTAATGACCAT+AGG | 0.565936 | 4.1:+22091083 | MS.gene26398:CDS |
| TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 4.1:+22089717 | MS.gene26398:CDS |
| GATCTACTAGATCTTGCTAC+TGG | 0.569155 | 4.1:+22089657 | MS.gene26398:CDS |
| ATGTTATCAGAGGTGTAAGC+GGG | 0.569812 | 4.1:-22088234 | None:intergenic |
| TCCTTAGTTGTAGTGCTGAA+AGG | 0.570590 | 4.1:+22091533 | MS.gene26398:CDS |
| GACGAGGGAAAATGCAGTGT+CGG | 0.572198 | 4.1:+22089692 | MS.gene26398:CDS |
| AGTGCTGAATGCAGTGAGCT+GGG | 0.573759 | 4.1:+22092392 | MS.gene26398:CDS |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 4.1:-22091059 | None:intergenic |
| TTGCTACTGGTTCGAGTACG+AGG | 0.579153 | 4.1:+22089670 | MS.gene26398:CDS |
| CGATAATCCCAGTTCATCCA+AGG | 0.585497 | 4.1:-22088618 | None:intergenic |
| ACCTTTCAGCATCATAGAGA+TGG | 0.588485 | 4.1:-22091353 | None:intergenic |
| TGGAGATGTAAGAGACGCGT+TGG | 0.588827 | 4.1:+22089755 | MS.gene26398:CDS |
| CTTTGGGAGCTGTGATTGCA+AGG | 0.589874 | 4.1:+22092427 | MS.gene26398:CDS |
| AAAGGGTATCGAGCATGCGG+TGG | 0.592296 | 4.1:+22088083 | None:intergenic |
| AGCCAATCAAACTACAGTGA+TGG | 0.593344 | 4.1:+22092022 | MS.gene26398:CDS |
| GATATAGGTTGCTGGTTGCG+AGG | 0.595916 | 4.1:+22089587 | MS.gene26398:intron |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 4.1:+22089849 | MS.gene26398:CDS |
| TTAAGGGCATGCTTGAGGGA+TGG | 0.601904 | 4.1:+22088313 | MS.gene26398:CDS |
| ACATAAGGTAAAACCAAGCA+AGG | 0.602728 | 4.1:-22092476 | None:intergenic |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 4.1:+22089867 | MS.gene26398:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 4.1:+22090988 | MS.gene26398:CDS |
| AAATGCGATTGAAGCGCGCA+TGG | 0.606624 | 4.1:+22091189 | MS.gene26398:CDS |
| TTGTGTGCTGAACAAAAGGA+TGG | 0.608825 | 4.1:+22090938 | MS.gene26398:CDS |
| TGCTGAATGCAGTGAGCTGG+GGG | 0.610403 | 4.1:+22092394 | MS.gene26398:CDS |
| GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 4.1:+22089731 | MS.gene26398:CDS |
| TTCTGGTGTTGGAGTGCTGG+CGG | 0.616859 | 4.1:+22089635 | MS.gene26398:CDS |
| AAGGGTATCGAGCATGCGGT+GGG | 0.619265 | 4.1:+22088084 | None:intergenic |
| AAGGCACGTTCGAAGAAACA+AGG | 0.620215 | 4.1:+22091007 | MS.gene26398:CDS |
| TATGCCCTTAGAAATTTCTG+AGG | 0.621828 | 4.1:+22088285 | MS.gene26398:CDS |
| ACATTTATCCATGTTATCAG+AGG | 0.625892 | 4.1:-22088244 | None:intergenic |
| GTGCTGAATGCAGTGAGCTG+GGG | 0.632180 | 4.1:+22092393 | MS.gene26398:CDS |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 4.1:+22090983 | MS.gene26398:CDS |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 4.1:+22090949 | MS.gene26398:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 4.1:+22090984 | MS.gene26398:CDS |
| GAGTGTCGAAAGGTTTCTGG+TGG | 0.642393 | 4.1:+22088595 | MS.gene26398:CDS |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 4.1:+22091018 | MS.gene26398:CDS |
| ATGAACCGATGAGTGTCGAA+AGG | 0.647445 | 4.1:+22088585 | MS.gene26398:CDS |
| ACTAACAGGAACCAGCTGCA+AGG | 0.658651 | 4.1:+22091986 | MS.gene26398:intron |
| TCCATCTCTATGATGCTGAA+AGG | 0.662432 | 4.1:+22091352 | MS.gene26398:CDS |
| ACTTCTATCAAAATTAGGAG+TGG | 0.664395 | 4.1:+22091499 | MS.gene26398:CDS |
| CATGTTATCAGAGGTGTAAG+CGG | 0.665124 | 4.1:-22088235 | None:intergenic |
| CTTGCAATCACAGCTCCCAA+AGG | 0.665524 | 4.1:-22092426 | None:intergenic |
| ACTGGTTCCTGGTTCGCTGG+AGG | 0.665782 | 4.1:+22088363 | MS.gene26398:CDS |
| TCTTTGATGAATGAAGATAG+TGG | 0.667178 | 4.1:+22089942 | MS.gene26398:CDS |
| TGGTTGCGAGGAAAGTGTTG+AGG | 0.674105 | 4.1:+22089599 | MS.gene26398:CDS |
| TGGTTCGAGTACGAGGACGA+GGG | 0.676342 | 4.1:+22089677 | MS.gene26398:CDS |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 4.1:+22090964 | MS.gene26398:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 4.1:+22090946 | MS.gene26398:CDS |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 4.1:+22090968 | MS.gene26398:CDS |
| CACGTTCGAAGAAACAAGGG+AGG | 0.709283 | 4.1:+22091011 | MS.gene26398:CDS |
| AGGCACGTTCGAAGAAACAA+GGG | 0.717525 | 4.1:+22091008 | MS.gene26398:CDS |
| AGCATGCGGTGGGAACAGGA+GGG | 0.725350 | 4.1:+22088094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAATTTAAGTAAAAAAA+TGG | + | chr4.1:22089295-22089314 | MS.gene26398:intron | 10.0% |
| !! | GAATAATAAAATAAATTGAA+TGG | + | chr4.1:22088975-22088994 | MS.gene26398:intron | 10.0% |
| !!! | ACTAATTATAAAATTTTGCA+GGG | + | chr4.1:22089053-22089072 | MS.gene26398:intron | 15.0% |
| !!! | TACTAATTATAAAATTTTGC+AGG | + | chr4.1:22089052-22089071 | MS.gene26398:intron | 15.0% |
| !!! | TAGAATTTGCTTATATATTA+TGG | - | chr4.1:22089335-22089354 | None:intergenic | 15.0% |
| !! | AAAAAGCTCATTAATTGAAA+AGG | + | chr4.1:22090211-22090230 | MS.gene26398:intron | 20.0% |
| !! | ATCCTTAATCAATATCAAAA+GGG | - | chr4.1:22092348-22092367 | None:intergenic | 20.0% |
| !! | ATCTTAATCAAATTATACAG+TGG | - | chr4.1:22088847-22088866 | None:intergenic | 20.0% |
| !! | CGGTATAAAAAAAAAATGAA+TGG | + | chr4.1:22091572-22091591 | MS.gene26398:intron | 20.0% |
| !! | TATCCTTAATCAATATCAAA+AGG | - | chr4.1:22092349-22092368 | None:intergenic | 20.0% |
| !! | TATTAAGAATTTACTTCCTA+CGG | + | chr4.1:22089271-22089290 | MS.gene26398:intron | 20.0% |
| !! | TTATTATTCAACATTATGCA+CGG | - | chr4.1:22088964-22088983 | None:intergenic | 20.0% |
| !!! | ATATTGGTTATCACTTATTT+AGG | - | chr4.1:22090365-22090384 | None:intergenic | 20.0% |
| !!! | ATCATAAATTTTCTGAATCA+TGG | - | chr4.1:22090410-22090429 | None:intergenic | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | + | chr4.1:22090560-22090579 | MS.gene26398:intron | 20.0% |
| !!! | TACTATGTTTTCCTTAATTT+TGG | + | chr4.1:22091958-22091977 | MS.gene26398:intron | 20.0% |
| ! | AGTAAAAAAATGGTCATGTT+TGG | + | chr4.1:22089305-22089324 | MS.gene26398:intron | 25.0% |
| ! | ATGAATTGTTGAAGCAAATT+AGG | + | chr4.1:22091113-22091132 | MS.gene26398:CDS | 25.0% |
| ! | ATTGAGAGAAAACTTACATA+TGG | + | chr4.1:22090321-22090340 | MS.gene26398:intron | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | + | chr4.1:22089798-22089817 | MS.gene26398:CDS | 25.0% |
| ! | CAAAAATCAGTCAATTCAAA+TGG | + | chr4.1:22089420-22089439 | MS.gene26398:intron | 25.0% |
| ! | CTATCTCATTGAATTACTTA+GGG | - | chr4.1:22089506-22089525 | None:intergenic | 25.0% |
| ! | GCTTGCAAAACATATTATAT+TGG | - | chr4.1:22090381-22090400 | None:intergenic | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | + | chr4.1:22090885-22090904 | MS.gene26398:intron | 25.0% |
| ! | GTCTTATAAGCTAACTTTAT+TGG | + | chr4.1:22091386-22091405 | MS.gene26398:intron | 25.0% |
| ! | TAATGAATACATAACTGCTA+GGG | - | chr4.1:22088450-22088469 | None:intergenic | 25.0% |
| ! | TCAGCTCAATTAATAAACAA+TGG | - | chr4.1:22088477-22088496 | None:intergenic | 25.0% |
| ! | TCTTATCTAATGTAACTGAT+AGG | + | chr4.1:22089544-22089563 | MS.gene26398:intron | 25.0% |
| ! | TCTTTGATGAATGAAAATAG+AGG | + | chr4.1:22089998-22090017 | MS.gene26398:intron | 25.0% |
| ! | TGCATTCAACTTAAGATATT+TGG | + | chr4.1:22091769-22091788 | MS.gene26398:intron | 25.0% |
| ! | TTAATGAATACATAACTGCT+AGG | - | chr4.1:22088451-22088470 | None:intergenic | 25.0% |
| ! | TTACTTAAATTTAAGTCCGT+AGG | - | chr4.1:22089290-22089309 | None:intergenic | 25.0% |
| ! | TTCAAATTACATTGTGCATA+AGG | - | chr4.1:22088683-22088702 | None:intergenic | 25.0% |
| ! | TTCAAATTTATTCTGTGATC+TGG | + | chr4.1:22090727-22090746 | MS.gene26398:intron | 25.0% |
| ! | TTGCTGATCAATTGAATAAT+AGG | + | chr4.1:22091607-22091626 | MS.gene26398:intron | 25.0% |
| ! | TTTATGCATGTCAATATGAA+TGG | + | chr4.1:22092200-22092219 | MS.gene26398:intron | 25.0% |
| !! | AAATTTCTGAGGAAGAATTA+AGG | + | chr4.1:22088296-22088315 | MS.gene26398:CDS | 25.0% |
| !! | AATTTCTGAGGAAGAATTAA+GGG | + | chr4.1:22088297-22088316 | MS.gene26398:CDS | 25.0% |
| !! | AATTTGGATGCTTTATTAAC+AGG | + | chr4.1:22091857-22091876 | MS.gene26398:intron | 25.0% |
| !! | CTGGATTTTTATATGGTTTT+AGG | + | chr4.1:22088208-22088227 | MS.gene26398:intron | 25.0% |
| !! | CTGTATAGAATATTTTGTGT+TGG | + | chr4.1:22091814-22091833 | MS.gene26398:intron | 25.0% |
| !! | GTTAATAAAGCATCCAAATT+TGG | - | chr4.1:22091857-22091876 | None:intergenic | 25.0% |
| !! | GTTAGTTTAGACCAAAATTA+AGG | - | chr4.1:22091972-22091991 | None:intergenic | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr4.1:22090911-22090930 | None:intergenic | 25.0% |
| !!! | AAGAATGCATTTTTAACTTC+AGG | + | chr4.1:22088547-22088566 | MS.gene26398:intron | 25.0% |
| !!! | AGAATGCATTTTTAACTTCA+GGG | + | chr4.1:22088548-22088567 | MS.gene26398:intron | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | + | chr4.1:22089809-22089828 | MS.gene26398:CDS | 25.0% |
| !!! | TAATTTTGGTCTAAACTAAC+AGG | + | chr4.1:22091972-22091991 | MS.gene26398:intron | 25.0% |
| !!! | TACCCTTTTGATATTGATTA+AGG | + | chr4.1:22092343-22092362 | MS.gene26398:intron | 25.0% |
| !!! | TAGAATATTTTGTGTTGGTT+TGG | + | chr4.1:22091819-22091838 | MS.gene26398:intron | 25.0% |
| !!! | TGATGGAGAATTGTTTTTAA+AGG | + | chr4.1:22090537-22090556 | MS.gene26398:intron | 25.0% |
| !!! | TTAATTGTTTTTCAGACTCA+TGG | + | chr4.1:22092369-22092388 | MS.gene26398:intron | 25.0% |
| !!! | TTTCAATGCTTTTAGAAGTT+TGG | + | chr4.1:22090497-22090516 | MS.gene26398:intron | 25.0% |
| !!! | TTTGTGATTTTGATTGCAAA+AGG | + | chr4.1:22091291-22091310 | MS.gene26398:intron | 25.0% |
| !!! | TTTTTTCCTAATCTTTCTGA+TGG | + | chr4.1:22090520-22090539 | MS.gene26398:intron | 25.0% |
| AAAAAAATGGTCATGTTTGG+TGG | + | chr4.1:22089308-22089327 | MS.gene26398:intron | 30.0% | |
| AAGTCACAAGTAACAACAAT+AGG | + | chr4.1:22092132-22092151 | MS.gene26398:intron | 30.0% | |
| AATGAATACATAACTGCTAG+GGG | - | chr4.1:22088449-22088468 | None:intergenic | 30.0% | |
| AATTCTCCATCAGAAAGATT+AGG | - | chr4.1:22090529-22090548 | None:intergenic | 30.0% | |
| ACATAGTAAATAAGTCAGCA+AGG | - | chr4.1:22091946-22091965 | None:intergenic | 30.0% | |
| ACATAGTGCAGTAGAAAAAA+TGG | - | chr4.1:22089025-22089044 | None:intergenic | 30.0% | |
| ACATTTATCCATGTTATCAG+AGG | - | chr4.1:22088247-22088266 | None:intergenic | 30.0% | |
| ACTTCTATCAAAATTAGGAG+TGG | + | chr4.1:22091499-22091518 | MS.gene26398:CDS | 30.0% | |
| AGTGTGAATCAAATTGAAGA+AGG | + | chr4.1:22088118-22088137 | MS.gene26398:CDS | 30.0% | |
| ATTCTCATTGCAATGGTTTA+TGG | + | chr4.1:22090673-22090692 | MS.gene26398:intron | 30.0% | |
| CAAGTAACAACAATAGGTTA+TGG | + | chr4.1:22092138-22092157 | MS.gene26398:intron | 30.0% | |
| CAGTGACTTCTATCAAAATT+AGG | + | chr4.1:22091494-22091513 | MS.gene26398:CDS | 30.0% | |
| CTATCTCATTGTATTGCTTA+GGG | - | chr4.1:22089454-22089473 | None:intergenic | 30.0% | |
| CTTCTTCATTGTATGACAAA+GGG | - | chr4.1:22088822-22088841 | None:intergenic | 30.0% | |
| GAGCCTGCTTATAAAAAAAA+TGG | + | chr4.1:22091791-22091810 | MS.gene26398:intron | 30.0% | |
| GCTATCTCATTGAATTACTT+AGG | - | chr4.1:22089507-22089526 | None:intergenic | 30.0% | |
| GCTGATTAGAATACCAAATT+TGG | + | chr4.1:22091841-22091860 | MS.gene26398:intron | 30.0% | |
| GGAAATAATTCTCATTGCAA+TGG | + | chr4.1:22090666-22090685 | MS.gene26398:intron | 30.0% | |
| GGCTCATTGTTACAATATAT+TGG | + | chr4.1:22091709-22091728 | MS.gene26398:intron | 30.0% | |
| GTCCAAAATGGTACATAATA+CGG | - | chr4.1:22088341-22088360 | None:intergenic | 30.0% | |
| TAAGAGTTAGTTGTTCTAAC+TGG | - | chr4.1:22089529-22089548 | None:intergenic | 30.0% | |
| TAGCTTGACATGTTTATGAA+TGG | + | chr4.1:22089353-22089372 | MS.gene26398:intron | 30.0% | |
| TCTTCCTCAGAAATTTCTAA+GGG | - | chr4.1:22088292-22088311 | None:intergenic | 30.0% | |
| TCTTCTTCATTGTATGACAA+AGG | - | chr4.1:22088823-22088842 | None:intergenic | 30.0% | |
| TCTTTGATGAATGAAGATAG+TGG | + | chr4.1:22089942-22089961 | MS.gene26398:CDS | 30.0% | |
| TGAAAAGGTTATTCTTCTTC+TGG | + | chr4.1:22090226-22090245 | MS.gene26398:intron | 30.0% | |
| TGAACTTTAACAACCTCTTA+TGG | + | chr4.1:22091688-22091707 | MS.gene26398:intron | 30.0% | |
| TTAGAATGTACAACATATCG+TGG | - | chr4.1:22090186-22090205 | None:intergenic | 30.0% | |
| TTCTTCCTCAGAAATTTCTA+AGG | - | chr4.1:22088293-22088312 | None:intergenic | 30.0% | |
| ! | AACTTTTGCATCTCTGATAT+AGG | + | chr4.1:22089572-22089591 | MS.gene26398:intron | 30.0% |
| ! | AATCAGCACTAAACATCTTT+TGG | - | chr4.1:22091252-22091271 | None:intergenic | 30.0% |
| ! | ATCCGTATTATGTACCATTT+TGG | + | chr4.1:22088336-22088355 | MS.gene26398:CDS | 30.0% |
| ! | ATGCATTCTTTAGAAGAAAG+AGG | - | chr4.1:22088537-22088556 | None:intergenic | 30.0% |
| ! | CTATTGGTGAAATGAGTTTT+AGG | + | chr4.1:22090055-22090074 | MS.gene26398:intron | 30.0% |
| ! | GGAATAGAAGTTTTACATAG+AGG | + | chr4.1:22091628-22091647 | MS.gene26398:intron | 30.0% |
| ! | TCTAAGGGCATATTAAAGTT+AGG | - | chr4.1:22088277-22088296 | None:intergenic | 30.0% |
| !! | ACACTGACTGGATTTTTATA+TGG | + | chr4.1:22088201-22088220 | MS.gene26398:intron | 30.0% |
| !! | CTTTTGCTATATTTGGCAAT+TGG | + | chr4.1:22088723-22088742 | MS.gene26398:intron | 30.0% |
| !! | GTTACGACTTTTGCTATATT+TGG | + | chr4.1:22088716-22088735 | MS.gene26398:intron | 30.0% |
| !! | TGCAGGAATTTTGGTAATAT+TGG | + | chr4.1:22091448-22091467 | MS.gene26398:intron | 30.0% |
| !! | TTTAAGAATGTTTCTGGTGT+TGG | + | chr4.1:22089624-22089643 | MS.gene26398:CDS | 30.0% |
| !!! | AGTGCTTTTGATTTGAAGTT+GGG | + | chr4.1:22090256-22090275 | MS.gene26398:intron | 30.0% |
| !!! | CAGCCATTTTTTTTATAAGC+AGG | - | chr4.1:22091797-22091816 | None:intergenic | 30.0% |
| !!! | CGTAAAATGTTTTTTGCTAC+AGG | + | chr4.1:22090840-22090859 | MS.gene26398:intron | 30.0% |
| AAGCAATACAATGAGATAGC+CGG | + | chr4.1:22089455-22089474 | MS.gene26398:intron | 35.0% | |
| AATTGGTTGTCCTTGATTCA+AGG | + | chr4.1:22088740-22088759 | MS.gene26398:intron | 35.0% | |
| ACAATTCATTAGCAGTCCTA+TGG | - | chr4.1:22091102-22091121 | None:intergenic | 35.0% | |
| ACATAAGGTAAAACCAAGCA+AGG | - | chr4.1:22092479-22092498 | None:intergenic | 35.0% | |
| AGAACAACTAACTCCCAAAT+GGG | + | chr4.1:22089480-22089499 | MS.gene26398:intron | 35.0% | |
| AGCATGATATTTGCTTCAGT+TGG | + | chr4.1:22088888-22088907 | MS.gene26398:intron | 35.0% | |
| ATTGCCAATGTACAGACAAA+TGG | - | chr4.1:22088784-22088803 | None:intergenic | 35.0% | |
| ATTGGTTGTCCTTGATTCAA+GGG | + | chr4.1:22088741-22088760 | MS.gene26398:intron | 35.0% | |
| ATTGTATTGCTTAGGGCTTA+GGG | - | chr4.1:22089447-22089466 | None:intergenic | 35.0% | |
| ATTTGTCTGTACATTGGCAA+TGG | + | chr4.1:22088783-22088802 | MS.gene26398:intron | 35.0% | |
| CTGTGTTGGAACTGATATTA+GGG | - | chr4.1:22090639-22090658 | None:intergenic | 35.0% | |
| GCTATCTCATTGTATTGCTT+AGG | - | chr4.1:22089455-22089474 | None:intergenic | 35.0% | |
| TACCATCACTGTAGTTTGAT+TGG | - | chr4.1:22092027-22092046 | None:intergenic | 35.0% | |
| TAGAACAACTAACTCCCAAA+TGG | + | chr4.1:22089479-22089498 | MS.gene26398:intron | 35.0% | |
| TATGCCCTTAGAAATTTCTG+AGG | + | chr4.1:22088285-22088304 | MS.gene26398:CDS | 35.0% | |
| TATTTCCCTAATTGCTGTGT+TGG | - | chr4.1:22090653-22090672 | None:intergenic | 35.0% | |
| TGGAACTGATATTAGGGAAA+AGG | - | chr4.1:22090633-22090652 | None:intergenic | 35.0% | |
| TTCAACATAACCATCAACAG+CGG | - | chr4.1:22089246-22089265 | None:intergenic | 35.0% | |
| TTGCCAATGTACAGACAAAT+GGG | - | chr4.1:22088783-22088802 | None:intergenic | 35.0% | |
| TTGCTTAATCTTGTGAGATG+TGG | + | chr4.1:22089717-22089736 | MS.gene26398:CDS | 35.0% | |
| TTGGGTTTATAATCTGTGAC+AGG | + | chr4.1:22090274-22090293 | MS.gene26398:intron | 35.0% | |
| TTGTAACAATGAGCCATAAG+AGG | - | chr4.1:22091704-22091723 | None:intergenic | 35.0% | |
| ! | AAAATATCTGAGGTTGTTCC+AGG | + | chr4.1:22089144-22089163 | MS.gene26398:intron | 35.0% |
| ! | ATGTACCATTTTGGACAAAC+TGG | + | chr4.1:22088345-22088364 | MS.gene26398:CDS | 35.0% |
| ! | CAACTTTCAGCTTTTTGTCA+TGG | + | chr4.1:22090803-22090822 | MS.gene26398:intron | 35.0% |
| ! | CTTCAGTTGGATTTCTTTTG+TGG | + | chr4.1:22088901-22088920 | MS.gene26398:intron | 35.0% |
| ! | TAAAATTTTGCAGGGATCCA+TGG | + | chr4.1:22089061-22089080 | MS.gene26398:intron | 35.0% |
| ! | TGAATAGTGGTTCATCGTTT+TGG | + | chr4.1:22090031-22090050 | MS.gene26398:intron | 35.0% |
| ! | TTTTTGCTACAGGTTCTACA+TGG | + | chr4.1:22090850-22090869 | MS.gene26398:intron | 35.0% |
| !! | ACAACTTGCTTTTGTCTTTG+AGG | + | chr4.1:22088143-22088162 | MS.gene26398:intron | 35.0% |
| !! | AGGTACGTTGATTTGAATAG+TGG | + | chr4.1:22090018-22090037 | MS.gene26398:intron | 35.0% |
| !! | GTTGATGGTTATGTTGAATC+AGG | + | chr4.1:22089248-22089267 | MS.gene26398:intron | 35.0% |
| !!! | AGTGCTGATTTTGATTGTGT+AGG | + | chr4.1:22091262-22091281 | MS.gene26398:intron | 35.0% |
| !!! | CATTTTTAACTTCAGGGAAG+TGG | + | chr4.1:22088554-22088573 | MS.gene26398:intron | 35.0% |
| !!! | GAGTGCTTTTGATTTGAAGT+TGG | + | chr4.1:22090255-22090274 | MS.gene26398:intron | 35.0% |
| !!! | GGTAATGTCGTTTTGAATAG+TGG | + | chr4.1:22089906-22089925 | MS.gene26398:CDS | 35.0% |
| !!! | TGAAATGAGTTTTAGGTTGG+CGG | + | chr4.1:22090062-22090081 | MS.gene26398:intron | 35.0% |
| !!! | TGGTGAAATGAGTTTTAGGT+TGG | + | chr4.1:22090059-22090078 | MS.gene26398:intron | 35.0% |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | + | chr4.1:22089845-22089864 | MS.gene26398:CDS | 35.0% |
| AACATCAGCAATTCCATCCA+TGG | - | chr4.1:22089790-22089809 | None:intergenic | 40.0% | |
| AAGGTATGTTAGCATGGGTT+CGG | + | chr4.1:22091552-22091571 | MS.gene26398:intron | 40.0% | |
| AAGTGTTAAGGAGCAGAGTA+AGG | + | chr4.1:22089821-22089840 | MS.gene26398:CDS | 40.0% | |
| AATTTCCAATCCGCTGTTGA+TGG | + | chr4.1:22089233-22089252 | MS.gene26398:intron | 40.0% | |
| ACCTTTCAGCACTACAACTA+AGG | - | chr4.1:22091537-22091556 | None:intergenic | 40.0% | |
| ACCTTTCAGCATCATAGAGA+TGG | - | chr4.1:22091356-22091375 | None:intergenic | 40.0% | |
| AGAAACCTTTCGACACTCAT+CGG | - | chr4.1:22088593-22088612 | None:intergenic | 40.0% | |
| AGCCAATCAAACTACAGTGA+TGG | + | chr4.1:22092022-22092041 | MS.gene26398:CDS | 40.0% | |
| AGGAACCAGTTTGTCCAAAA+TGG | - | chr4.1:22088353-22088372 | None:intergenic | 40.0% | |
| AGTGAGCTTTCAGATTCTCA+AGG | - | chr4.1:22089103-22089122 | None:intergenic | 40.0% | |
| CAATAGGTTATGGTCAACAG+TGG | + | chr4.1:22092148-22092167 | MS.gene26398:intron | 40.0% | |
| CACGGTGATGTTTGTAATCA+TGG | + | chr4.1:22089885-22089904 | MS.gene26398:CDS | 40.0% | |
| CAGTTCCAACACAGCAATTA+GGG | + | chr4.1:22090645-22090664 | MS.gene26398:intron | 40.0% | |
| CATTGTATTGCTTAGGGCTT+AGG | - | chr4.1:22089448-22089467 | None:intergenic | 40.0% | |
| CTTAATCTTGTGAGATGTGG+TGG | + | chr4.1:22089720-22089739 | MS.gene26398:CDS | 40.0% | |
| CTTGGATGAACTGGGATTAT+CGG | + | chr4.1:22088619-22088638 | MS.gene26398:CDS | 40.0% | |
| GAATTACTTAGGGCCCATTT+GGG | - | chr4.1:22089496-22089515 | None:intergenic | 40.0% | |
| GATCTACTAGATCTTGCTAC+TGG | + | chr4.1:22089657-22089676 | MS.gene26398:CDS | 40.0% | |
| GCTGTGTTGGAACTGATATT+AGG | - | chr4.1:22090640-22090659 | None:intergenic | 40.0% | |
| TACCCCATTTGTCTGTACAT+TGG | + | chr4.1:22088777-22088796 | MS.gene26398:intron | 40.0% | |
| TATATAGGAAGCTGATTGGC+AGG | - | chr4.1:22092504-22092523 | None:intergenic | 40.0% | |
| TCAAATATGCAGACCTTGCT+TGG | + | chr4.1:22092463-22092482 | MS.gene26398:CDS | 40.0% | |
| TCAGTTCCAACACAGCAATT+AGG | + | chr4.1:22090644-22090663 | MS.gene26398:intron | 40.0% | |
| TCCATCTCTATGATGCTGAA+AGG | + | chr4.1:22091352-22091371 | MS.gene26398:CDS | 40.0% | |
| TGAACAAAAGGATGGATCAG+TGG | + | chr4.1:22090946-22090965 | MS.gene26398:CDS | 40.0% | |
| TGAATTACTTAGGGCCCATT+TGG | - | chr4.1:22089497-22089516 | None:intergenic | 40.0% | |
| TGCCAATGTACAGACAAATG+GGG | - | chr4.1:22088782-22088801 | None:intergenic | 40.0% | |
| TGGGAGTTAGTTGTTCTAAC+CGG | - | chr4.1:22089477-22089496 | None:intergenic | 40.0% | |
| TTCTTCAAGGGATGTTAGGA+CGG | - | chr4.1:22089186-22089205 | None:intergenic | 40.0% | |
| TTGAAAGGTGGTTCGTTGTT+TGG | + | chr4.1:22089974-22089993 | MS.gene26398:intron | 40.0% | |
| TTGGATGAACTGGGATTATC+GGG | + | chr4.1:22088620-22088639 | MS.gene26398:CDS | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | - | chr4.1:22091062-22091081 | None:intergenic | 40.0% | |
| TTGTGTGCTGAACAAAAGGA+TGG | + | chr4.1:22090938-22090957 | MS.gene26398:CDS | 40.0% | |
| ! | AAGAATTAAGGGCATGCTTG+AGG | + | chr4.1:22088308-22088327 | MS.gene26398:CDS | 40.0% |
| ! | AGAATTAAGGGCATGCTTGA+GGG | + | chr4.1:22088309-22088328 | MS.gene26398:CDS | 40.0% |
| ! | ATGTTATCAGAGGTGTAAGC+GGG | - | chr4.1:22088237-22088256 | None:intergenic | 40.0% |
| ! | CATGTTATCAGAGGTGTAAG+CGG | - | chr4.1:22088238-22088257 | None:intergenic | 40.0% |
| ! | GAGGCGTTTAAGAATGTTTC+TGG | + | chr4.1:22089618-22089637 | MS.gene26398:CDS | 40.0% |
| ! | GCTGAAAGGTATGTTAGCAT+GGG | + | chr4.1:22091547-22091566 | MS.gene26398:intron | 40.0% |
| ! | GGAAATTTGAAGCATCCTTG+AGG | - | chr4.1:22089220-22089239 | None:intergenic | 40.0% |
| ! | TCCTTAGTTGTAGTGCTGAA+AGG | + | chr4.1:22091533-22091552 | MS.gene26398:CDS | 40.0% |
| ! | TGCTGAAAGGTATGTTAGCA+TGG | + | chr4.1:22091546-22091565 | MS.gene26398:intron | 40.0% |
| ! | TGGAGGTATGGCTAAAGATT+AGG | + | chr4.1:22092168-22092187 | MS.gene26398:intron | 40.0% |
| ! | TGTGATTGCAAGGTACTTGA+AGG | + | chr4.1:22092437-22092456 | MS.gene26398:CDS | 40.0% |
| ! | TTTGGTAATATTGGCAGCGT+TGG | + | chr4.1:22091457-22091476 | MS.gene26398:CDS | 40.0% |
| !! | ATTTTGGACAAACTGGTTCC+TGG | + | chr4.1:22088352-22088371 | MS.gene26398:CDS | 40.0% |
| !! | GGTTCATCGTTTTGGTCTAT+TGG | + | chr4.1:22090039-22090058 | MS.gene26398:intron | 40.0% |
| !! | TAGTGGTACGTCGTTTTGAA+AGG | + | chr4.1:22089959-22089978 | MS.gene26398:intron | 40.0% |
| !!! | ATGTTTTTTCTCCTTGCAGC+TGG | - | chr4.1:22092000-22092019 | None:intergenic | 40.0% |
| AAGGCACGTTCGAAGAAACA+AGG | + | chr4.1:22091007-22091026 | MS.gene26398:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr4.1:22090949-22090968 | MS.gene26398:CDS | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | + | chr4.1:22091035-22091054 | MS.gene26398:CDS | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | + | chr4.1:22091008-22091027 | MS.gene26398:CDS | 45.0% | |
| AGGTGATGCATCACAGAGAA+TGG | + | chr4.1:22091153-22091172 | MS.gene26398:CDS | 45.0% | |
| CATAACCATCAACAGCGGAT+TGG | - | chr4.1:22089241-22089260 | None:intergenic | 45.0% | |
| CGATAATCCCAGTTCATCCA+AGG | - | chr4.1:22088621-22088640 | None:intergenic | 45.0% | |
| CGCTTACACCTCTGATAACA+TGG | + | chr4.1:22088236-22088255 | MS.gene26398:CDS | 45.0% | |
| CGGTTTCTTCAAGGGATGTT+AGG | - | chr4.1:22089190-22089209 | None:intergenic | 45.0% | |
| CTCTTGCAATCGCTTCTAGA+TGG | - | chr4.1:22090699-22090718 | None:intergenic | 45.0% | |
| CTGTGTCTGCTAATGACCAT+AGG | + | chr4.1:22091083-22091102 | MS.gene26398:CDS | 45.0% | |
| CTTGTGCACACAGAACCAAA+AGG | - | chr4.1:22091063-22091082 | None:intergenic | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | + | chr4.1:22091018-22091037 | MS.gene26398:CDS | 45.0% | |
| GCATCTCTGATATAGGTTGC+TGG | + | chr4.1:22089579-22089598 | MS.gene26398:intron | 45.0% | |
| GCCTATGCTCGTATAAAGCT+GGG | - | chr4.1:22088942-22088961 | None:intergenic | 45.0% | |
| GCTGATTGGCAGGTAACATA+AGG | - | chr4.1:22092494-22092513 | None:intergenic | 45.0% | |
| GCTGCACGAGAAAATATCTG+AGG | + | chr4.1:22089134-22089153 | MS.gene26398:intron | 45.0% | |
| GGGATTTGAATTGTCAGAGC+TGG | + | chr4.1:22088640-22088659 | MS.gene26398:CDS | 45.0% | |
| GTATGAATGTACGACTGTGC+AGG | + | chr4.1:22091431-22091450 | MS.gene26398:intron | 45.0% | |
| GTCGTTGTGTGCTGAACAAA+AGG | + | chr4.1:22090934-22090953 | MS.gene26398:CDS | 45.0% | |
| TAGGTTATGGTCAACAGTGG+AGG | + | chr4.1:22092151-22092170 | MS.gene26398:intron | 45.0% | |
| TATGGTCAACAGTGGAGGTA+TGG | + | chr4.1:22092156-22092175 | MS.gene26398:intron | 45.0% | |
| TCCAGTCAGTGTCGTAGATA+TGG | - | chr4.1:22088193-22088212 | None:intergenic | 45.0% | |
| TCCATATCTACGACACTGAC+TGG | + | chr4.1:22088189-22088208 | MS.gene26398:intron | 45.0% | |
| TCTTCAAGGGATGTTAGGAC+GGG | - | chr4.1:22089185-22089204 | None:intergenic | 45.0% | |
| ! | ACCCAGCTTTATACGAGCAT+AGG | + | chr4.1:22088938-22088957 | MS.gene26398:intron | 45.0% |
| ! | AGTTACTTTCTTGCCTCAGG+GGG | + | chr4.1:22091315-22091334 | MS.gene26398:intron | 45.0% |
| ! | CAGTTACTTTCTTGCCTCAG+GGG | + | chr4.1:22091314-22091333 | MS.gene26398:intron | 45.0% |
| ! | GCAGTTACTTTCTTGCCTCA+GGG | + | chr4.1:22091313-22091332 | MS.gene26398:intron | 45.0% |
| ! | GTACGACTGTGCAGGAATTT+TGG | + | chr4.1:22091439-22091458 | MS.gene26398:intron | 45.0% |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr4.1:22091045-22091064 | MS.gene26398:CDS | 45.0% |
| !! | ACACAGGTTGGTGAACTTGA+TGG | + | chr4.1:22090980-22090999 | MS.gene26398:CDS | 45.0% |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr4.1:22091133-22091152 | MS.gene26398:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | + | chr4.1:22090984-22091003 | MS.gene26398:CDS | 45.0% |
| !! | ATGAACCGATGAGTGTCGAA+AGG | + | chr4.1:22088585-22088604 | MS.gene26398:CDS | 45.0% |
| !! | GAGTTGATGAGAGTGATGGT+TGG | + | chr4.1:22089849-22089868 | MS.gene26398:CDS | 45.0% |
| !! | GATGAGTGTCGAAAGGTTTC+TGG | + | chr4.1:22088592-22088611 | MS.gene26398:CDS | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | + | chr4.1:22089867-22089886 | MS.gene26398:CDS | 45.0% |
| !! | TGGCAGCGTTGGTAATCATT+CGG | + | chr4.1:22091468-22091487 | MS.gene26398:CDS | 45.0% |
| !!! | TGGTACGTCGTTTTGAAAGG+TGG | + | chr4.1:22089962-22089981 | MS.gene26398:intron | 45.0% |
| AAATGCGATTGAAGCGCGCA+TGG | + | chr4.1:22091189-22091208 | MS.gene26398:CDS | 50.0% | |
| ACTAACAGGAACCAGCTGCA+AGG | + | chr4.1:22091986-22092005 | MS.gene26398:intron | 50.0% | |
| AGGTTGTTCCAGGAAGACGT+GGG | + | chr4.1:22089154-22089173 | MS.gene26398:intron | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | + | chr4.1:22091011-22091030 | MS.gene26398:CDS | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | + | chr4.1:22090859-22090878 | MS.gene26398:intron | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | + | chr4.1:22091017-22091036 | MS.gene26398:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr4.1:22091151-22091170 | None:intergenic | 50.0% | |
| CTTGCAATCACAGCTCCCAA+AGG | - | chr4.1:22092429-22092448 | None:intergenic | 50.0% | |
| GACGAGGGAAAATGCAGTGT+CGG | + | chr4.1:22089692-22089711 | MS.gene26398:CDS | 50.0% | |
| GGCCTATGCTCGTATAAAGC+TGG | - | chr4.1:22088943-22088962 | None:intergenic | 50.0% | |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr4.1:22090968-22090987 | MS.gene26398:CDS | 50.0% | |
| GTTGTCCTTGATTCAAGGGC+TGG | + | chr4.1:22088745-22088764 | MS.gene26398:intron | 50.0% | |
| TCAAGCCAGCCCTTGAATCA+AGG | - | chr4.1:22088753-22088772 | None:intergenic | 50.0% | |
| TGAATTGTCAGAGCTGGAGC+AGG | + | chr4.1:22088646-22088665 | MS.gene26398:CDS | 50.0% | |
| TGGAGATGTAAGAGACGCGT+TGG | + | chr4.1:22089755-22089774 | MS.gene26398:CDS | 50.0% | |
| TGGGGGATCTTGATGCCTTT+GGG | + | chr4.1:22092411-22092430 | MS.gene26398:CDS | 50.0% | |
| TGGTGAACTTGATGGAGGGA+AGG | + | chr4.1:22090988-22091007 | MS.gene26398:CDS | 50.0% | |
| ! | AGTGCTGAATGCAGTGAGCT+GGG | + | chr4.1:22092392-22092411 | MS.gene26398:CDS | 50.0% |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr4.1:22090964-22090983 | MS.gene26398:CDS | 50.0% |
| ! | CTTTGGGAGCTGTGATTGCA+AGG | + | chr4.1:22092427-22092446 | MS.gene26398:CDS | 50.0% |
| ! | GATATAGGTTGCTGGTTGCG+AGG | + | chr4.1:22089587-22089606 | MS.gene26398:intron | 50.0% |
| ! | GCGAGGATCGGTTTCTTCAA+GGG | - | chr4.1:22089198-22089217 | None:intergenic | 50.0% |
| ! | GGCAGTTACTTTCTTGCCTC+AGG | + | chr4.1:22091312-22091331 | MS.gene26398:intron | 50.0% |
| ! | TGTGAGATGTGGTGGAGATG+TGG | + | chr4.1:22089728-22089747 | MS.gene26398:CDS | 50.0% |
| ! | TTAAGGGCATGCTTGAGGGA+TGG | + | chr4.1:22088313-22088332 | MS.gene26398:CDS | 50.0% |
| ! | TTTGAAGCATCCTTGAGGCG+AGG | - | chr4.1:22089215-22089234 | None:intergenic | 50.0% |
| !! | CAGGTTGGTGAACTTGATGG+AGG | + | chr4.1:22090983-22091002 | MS.gene26398:CDS | 50.0% |
| !! | GAGTGTCGAAAGGTTTCTGG+TGG | + | chr4.1:22088595-22088614 | MS.gene26398:CDS | 50.0% |
| !! | TGGTTGCGAGGAAAGTGTTG+AGG | + | chr4.1:22089599-22089618 | MS.gene26398:CDS | 50.0% |
| !! | TGTTTCTGGTGTTGGAGTGC+TGG | + | chr4.1:22089632-22089651 | MS.gene26398:CDS | 50.0% |
| !! | TTCTCAAGGCACTGCAACAC+AGG | - | chr4.1:22089089-22089108 | None:intergenic | 50.0% |
| !! | TTGCTACTGGTTCGAGTACG+AGG | + | chr4.1:22089670-22089689 | MS.gene26398:CDS | 50.0% |
| AGAAACCGATCCTCGCCTCA+AGG | + | chr4.1:22089202-22089221 | MS.gene26398:intron | 55.0% | |
| AGCATCCTTGAGGCGAGGAT+CGG | - | chr4.1:22089210-22089229 | None:intergenic | 55.0% | |
| AGGGAGGAAGAGGGATGTTG+TGG | + | chr4.1:22091027-22091046 | MS.gene26398:CDS | 55.0% | |
| CATACAATCTCGTCCCCCTG+AGG | - | chr4.1:22091331-22091350 | None:intergenic | 55.0% | |
| CTGGGGGATCTTGATGCCTT+TGG | + | chr4.1:22092410-22092429 | MS.gene26398:CDS | 55.0% | |
| GAGGTTGTTCCAGGAAGACG+TGG | + | chr4.1:22089153-22089172 | MS.gene26398:intron | 55.0% | |
| GTGCTGAATGCAGTGAGCTG+GGG | + | chr4.1:22092393-22092412 | MS.gene26398:CDS | 55.0% | |
| TGCTGAATGCAGTGAGCTGG+GGG | + | chr4.1:22092394-22092413 | MS.gene26398:CDS | 55.0% | |
| TGGTTCGAGTACGAGGACGA+GGG | + | chr4.1:22089677-22089696 | MS.gene26398:CDS | 55.0% | |
| ! | CAAACTGGTTCCTGGTTCGC+TGG | + | chr4.1:22088360-22088379 | MS.gene26398:CDS | 55.0% |
| ! | CTGGTGGCCTTGGATGAACT+GGG | + | chr4.1:22088611-22088630 | MS.gene26398:CDS | 55.0% |
| ! | GAGATGTGGTGGAGATGTGG+TGG | + | chr4.1:22089731-22089750 | MS.gene26398:CDS | 55.0% |
| ! | GGCGAGGATCGGTTTCTTCA+AGG | - | chr4.1:22089199-22089218 | None:intergenic | 55.0% |
| ! | GTAAGAGACGCGTTGGCGTT+TGG | + | chr4.1:22089762-22089781 | MS.gene26398:CDS | 55.0% |
| ! | TCTGGTGGCCTTGGATGAAC+TGG | + | chr4.1:22088610-22088629 | MS.gene26398:CDS | 55.0% |
| !! | CGAAAGGTTTCTGGTGGCCT+TGG | + | chr4.1:22088601-22088620 | MS.gene26398:CDS | 55.0% |
| !! | CGCATGGTTGGTGCTGGTAA+CGG | + | chr4.1:22091205-22091224 | MS.gene26398:intron | 55.0% |
| !! | GAGTGCTGAATGCAGTGAGC+TGG | + | chr4.1:22092391-22092410 | MS.gene26398:CDS | 55.0% |
| !! | TTCTGGTGTTGGAGTGCTGG+CGG | + | chr4.1:22089635-22089654 | MS.gene26398:CDS | 55.0% |
| !! | TTGGCGTTTGGTGCCATGGA+TGG | + | chr4.1:22089774-22089793 | MS.gene26398:CDS | 55.0% |
| CAAGGGATGTTAGGACGGGC+TGG | - | chr4.1:22089181-22089200 | None:intergenic | 60.0% | |
| CCTACTACCTCCAGCGAACC+AGG | - | chr4.1:22088373-22088392 | None:intergenic | 60.0% | |
| GCACTGCAACACAGGCACCA+TGG | - | chr4.1:22089081-22089100 | None:intergenic | 60.0% | |
| GCGATTGAAGCGCGCATGGT+TGG | + | chr4.1:22091193-22091212 | MS.gene26398:CDS | 60.0% | |
| ! | ACTGGTTCCTGGTTCGCTGG+AGG | + | chr4.1:22088363-22088382 | MS.gene26398:CDS | 60.0% |
| ! | CCTGGTTCGCTGGAGGTAGT+AGG | + | chr4.1:22088370-22088389 | MS.gene26398:intron | 60.0% |
| ! | CTGGTTCGAGTACGAGGACG+AGG | + | chr4.1:22089676-22089695 | MS.gene26398:CDS | 60.0% |
| ! | TGTGGTGGAGATGTGGTGGC+TGG | + | chr4.1:22089735-22089754 | MS.gene26398:CDS | 60.0% |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | + | chr4.1:22091199-22091218 | MS.gene26398:CDS | 65.0% |
| !! | CGCGTTGGCGTTTGGTGCCA+TGG | + | chr4.1:22089770-22089789 | MS.gene26398:CDS | 65.0% |
| !! | GGGCTGGTCCCACGTCTTCC+TGG | - | chr4.1:22089165-22089184 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22088097 | 22092524 | 22088097 | ID=MS.gene26398 |
| chr4.1 | mRNA | 22088097 | 22092524 | 22088097 | ID=MS.gene26398.t1;Parent=MS.gene26398 |
| chr4.1 | exon | 22088097 | 22088139 | 22088097 | ID=MS.gene26398.t1.exon1;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22088097 | 22088139 | 22088097 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22088230 | 22088387 | 22088230 | ID=MS.gene26398.t1.exon2;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22088230 | 22088387 | 22088230 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22088569 | 22088667 | 22088569 | ID=MS.gene26398.t1.exon3;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22088569 | 22088667 | 22088569 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22089594 | 22089963 | 22089594 | ID=MS.gene26398.t1.exon4;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22089594 | 22089963 | 22089594 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22090927 | 22091220 | 22090927 | ID=MS.gene26398.t1.exon5;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22090927 | 22091220 | 22090927 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22091334 | 22091373 | 22091334 | ID=MS.gene26398.t1.exon6;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22091334 | 22091373 | 22091334 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22091453 | 22091554 | 22091453 | ID=MS.gene26398.t1.exon7;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22091453 | 22091554 | 22091453 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22091994 | 22092060 | 22091994 | ID=MS.gene26398.t1.exon8;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22091994 | 22092060 | 22091994 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| chr4.1 | exon | 22092384 | 22092524 | 22092384 | ID=MS.gene26398.t1.exon9;Parent=MS.gene26398.t1 |
| chr4.1 | CDS | 22092384 | 22092524 | 22092384 | ID=cds.MS.gene26398.t1;Parent=MS.gene26398.t1 |
| Gene Sequence |
| Protein sequence |
