Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26434.t1 | XP_003608122.2 | 92.5 | 400 | 17 | 1 | 1 | 387 | 1 | 400 | 6.80E-211 | 743 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26434.t1 | O49523 | 51.4 | 395 | 171 | 6 | 5 | 379 | 20 | 413 | 2.4e-108 | 393.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26434.t1 | G7JPP4 | 92.5 | 400 | 17 | 1 | 1 | 387 | 1 | 400 | 4.9e-211 | 743.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058450 | MS.gene26434 | 0.802309 | 5.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26434.t1 | MTR_4g087830 | 92.500 | 400 | 17 | 1 | 1 | 387 | 1 | 400 | 0.0 | 760 |
| MS.gene26434.t1 | MTR_4g087810 | 87.688 | 398 | 36 | 1 | 1 | 385 | 10 | 407 | 0.0 | 722 |
| MS.gene26434.t1 | MTR_2g015690 | 59.091 | 396 | 141 | 5 | 3 | 379 | 19 | 412 | 8.32e-164 | 465 |
| MS.gene26434.t1 | MTR_4g077070 | 37.701 | 435 | 214 | 11 | 1 | 387 | 97 | 522 | 4.20e-89 | 279 |
| MS.gene26434.t1 | MTR_7g096120 | 37.321 | 418 | 218 | 8 | 4 | 380 | 74 | 488 | 5.76e-88 | 275 |
| MS.gene26434.t1 | MTR_4g080100 | 38.725 | 408 | 195 | 8 | 7 | 370 | 31 | 427 | 5.10e-87 | 271 |
| MS.gene26434.t1 | MTR_7g096140 | 37.275 | 389 | 206 | 7 | 4 | 357 | 74 | 459 | 7.99e-83 | 260 |
| MS.gene26434.t1 | MTR_5g013230 | 33.943 | 383 | 184 | 13 | 4 | 337 | 135 | 497 | 4.49e-51 | 179 |
| MS.gene26434.t1 | MTR_7g006400 | 38.276 | 290 | 139 | 9 | 4 | 275 | 105 | 372 | 7.14e-51 | 178 |
| MS.gene26434.t1 | MTR_7g081645 | 35.519 | 366 | 180 | 17 | 3 | 332 | 74 | 419 | 7.45e-51 | 176 |
| MS.gene26434.t1 | MTR_4g099510 | 34.748 | 377 | 172 | 14 | 8 | 337 | 133 | 482 | 1.65e-47 | 169 |
| MS.gene26434.t1 | MTR_7g081620 | 31.738 | 397 | 192 | 16 | 4 | 336 | 69 | 450 | 4.70e-45 | 161 |
| MS.gene26434.t1 | MTR_1995s0010 | 35.586 | 222 | 116 | 4 | 118 | 314 | 1 | 220 | 2.70e-37 | 134 |
| MS.gene26434.t1 | MTR_2g020020 | 28.649 | 185 | 96 | 9 | 97 | 277 | 83 | 235 | 5.56e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26434.t1 | AT4G18550 | 51.263 | 396 | 172 | 6 | 4 | 379 | 36 | 430 | 2.99e-139 | 404 |
| MS.gene26434.t1 | AT4G18550 | 51.263 | 396 | 172 | 6 | 4 | 379 | 19 | 413 | 3.56e-139 | 403 |
| MS.gene26434.t1 | AT1G06250 | 48.072 | 389 | 181 | 6 | 4 | 372 | 5 | 392 | 1.25e-127 | 374 |
| MS.gene26434.t1 | AT4G18550 | 49.827 | 289 | 125 | 5 | 4 | 277 | 36 | 319 | 1.12e-95 | 288 |
| MS.gene26434.t1 | AT1G06250 | 49.640 | 278 | 133 | 3 | 102 | 372 | 1 | 278 | 1.10e-90 | 275 |
| MS.gene26434.t1 | AT1G51440 | 39.762 | 420 | 194 | 12 | 3 | 374 | 86 | 494 | 2.47e-86 | 271 |
| MS.gene26434.t1 | AT2G30550 | 39.474 | 418 | 204 | 12 | 7 | 380 | 104 | 516 | 2.04e-85 | 269 |
| MS.gene26434.t1 | AT1G06800 | 38.732 | 426 | 211 | 14 | 7 | 387 | 88 | 508 | 2.06e-83 | 263 |
| MS.gene26434.t1 | AT1G30370 | 35.484 | 403 | 213 | 12 | 4 | 370 | 114 | 505 | 1.54e-73 | 238 |
| MS.gene26434.t1 | AT2G42690 | 35.766 | 411 | 215 | 8 | 1 | 372 | 1 | 401 | 4.28e-73 | 234 |
| MS.gene26434.t1 | AT2G30550 | 39.429 | 350 | 169 | 11 | 7 | 318 | 104 | 448 | 8.27e-69 | 224 |
| MS.gene26434.t1 | AT1G06800 | 38.920 | 352 | 171 | 13 | 7 | 319 | 88 | 434 | 3.97e-66 | 216 |
| MS.gene26434.t1 | AT1G05800 | 34.254 | 362 | 187 | 10 | 4 | 333 | 80 | 422 | 5.69e-54 | 186 |
| MS.gene26434.t1 | AT2G31690 | 38.112 | 286 | 152 | 6 | 4 | 275 | 88 | 362 | 2.13e-53 | 184 |
| MS.gene26434.t1 | AT4G16820 | 35.079 | 382 | 188 | 14 | 8 | 348 | 131 | 493 | 4.40e-50 | 176 |
| MS.gene26434.t1 | AT2G44810 | 32.718 | 379 | 184 | 13 | 4 | 332 | 86 | 443 | 7.24e-48 | 169 |
| MS.gene26434.t1 | AT2G44810 | 32.708 | 373 | 180 | 13 | 10 | 332 | 2 | 353 | 2.61e-46 | 162 |
Find 84 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAGTATATTTGGAAAA+AGG | 0.200965 | 4.4:+24973012 | MS.gene26434:intron |
| TTGGAGGGTAGTGGAGAATA+AGG | 0.203235 | 4.4:+24974931 | MS.gene26434:CDS |
| TGTAACTGCACATTCGATTT+AGG | 0.218692 | 4.4:-24973498 | None:intergenic |
| TATGCAAGAAGAAGACTATT+TGG | 0.263873 | 4.4:-24974698 | None:intergenic |
| CGTAAGTACTTACTACATTA+TGG | 0.283055 | 4.4:+24972898 | MS.gene26434:CDS |
| TAAAGGAGGGTTTAATTTAG+AGG | 0.288625 | 4.4:+24974838 | MS.gene26434:CDS |
| TTAACAGCTAAGGAAGCATT+AGG | 0.303858 | 4.4:+24973375 | MS.gene26434:intron |
| CCTGTCACATTATTTGCATT+TGG | 0.305993 | 4.4:+24974581 | MS.gene26434:CDS |
| TTCAAAGGATGCTTGGAGTA+TGG | 0.306662 | 4.4:+24973122 | MS.gene26434:CDS |
| CGCTGCACTATCTCTTGCTT+TGG | 0.312823 | 4.4:-24973079 | None:intergenic |
| GTTTATTTGCATGGAATTGC+AGG | 0.337895 | 4.4:+24974803 | MS.gene26434:CDS |
| CTTGGAGTATGGAAACAAAT+TGG | 0.350231 | 4.4:+24973133 | MS.gene26434:CDS |
| AATATCACATTCCTGAGAAT+TGG | 0.362474 | 4.4:+24974912 | MS.gene26434:CDS |
| CTAGCACTAGAATCAGCTAT+TGG | 0.371790 | 4.4:-24973564 | None:intergenic |
| TGCTTGGAGAGGGACAATTC+AGG | 0.376867 | 4.4:+24973416 | MS.gene26434:CDS |
| GATCCTGCACCACTTATATT+CGG | 0.398511 | 4.4:+24973474 | MS.gene26434:CDS |
| TGATGGTACTTGGAAGCTAA+TGG | 0.402739 | 4.4:+24974970 | MS.gene26434:CDS |
| AAGTAAGTGGAAAGGTCTAT+TGG | 0.420412 | 4.4:+24972855 | MS.gene26434:CDS |
| ACTTGCAACTATAAGTTCTA+TGG | 0.425826 | 4.4:+24974505 | MS.gene26434:CDS |
| AATCAATTCAACATACCAAA+AGG | 0.437625 | 4.4:+24974539 | MS.gene26434:CDS |
| GGATGTTGCATACAAATACT+TGG | 0.442993 | 4.4:-24973058 | None:intergenic |
| TTTGCTCAAGCTACATATGA+TGG | 0.446546 | 4.4:+24972925 | MS.gene26434:CDS |
| TGATGGTTTCAACTTTGAAA+AGG | 0.449579 | 4.4:+24972942 | MS.gene26434:CDS |
| TAACAGCTAAGGAAGCATTA+GGG | 0.450387 | 4.4:+24973376 | MS.gene26434:intron |
| TGATTCTAGTGCTAGAAAAC+AGG | 0.455743 | 4.4:+24973572 | MS.gene26434:CDS |
| TTCAACAATCTGATGGTACT+TGG | 0.456136 | 4.4:+24974960 | MS.gene26434:CDS |
| AACATGGAGGTTTATTTGCA+TGG | 0.461774 | 4.4:+24974794 | MS.gene26434:CDS |
| CTATTAAACAAAAGTAATGA+TGG | 0.464521 | 4.4:+24974878 | MS.gene26434:CDS |
| AATCTAAGTACTTGAAGAGT+GGG | 0.469182 | 4.4:+24974759 | MS.gene26434:CDS |
| AACTGTCGTTGGACACAGCT+TGG | 0.475044 | 4.4:+24974475 | MS.gene26434:CDS |
| TTGGTCACAGAATACTTGTA+AGG | 0.480981 | 4.4:-24973039 | None:intergenic |
| GGAGGGACATAGTTGTTGCT+TGG | 0.481190 | 4.4:+24973400 | MS.gene26434:CDS |
| TCCACTACCCTCCAATTCTC+AGG | 0.484828 | 4.4:-24974923 | None:intergenic |
| GCTTGGAGAGGGACAATTCA+GGG | 0.489035 | 4.4:+24973417 | MS.gene26434:CDS |
| TGCATATTCAAAGGTGGGAG+AGG | 0.502064 | 4.4:+24974715 | MS.gene26434:CDS |
| CTTCTTGCATATTCAAAGGT+GGG | 0.504433 | 4.4:+24974710 | MS.gene26434:CDS |
| TGGAGGGTAGTGGAGAATAA+GGG | 0.509505 | 4.4:+24974932 | MS.gene26434:CDS |
| GAGTATGGAAACAAATTGGA+TGG | 0.512934 | 4.4:+24973137 | MS.gene26434:CDS |
| ACTGTCGTTGGACACAGCTT+GGG | 0.515205 | 4.4:+24974476 | MS.gene26434:CDS |
| ATAAGTTCTATGGATATAGT+TGG | 0.515353 | 4.4:+24974515 | MS.gene26434:CDS |
| TCCTGAGAATTGGAGGGTAG+TGG | 0.519316 | 4.4:+24974922 | MS.gene26434:CDS |
| GACAATTCAGGGTGCAGAGT+GGG | 0.520098 | 4.4:+24973428 | MS.gene26434:CDS |
| GAAAAGGCATCTAAGTATGC+AGG | 0.523914 | 4.4:+24972958 | MS.gene26434:CDS |
| GGACCGAATATAAGTGGTGC+AGG | 0.524592 | 4.4:-24973477 | None:intergenic |
| CATGGAATTGCAGGAACACA+AGG | 0.532517 | 4.4:+24974812 | MS.gene26434:CDS |
| ATCAATTCAACATACCAAAA+GGG | 0.533299 | 4.4:+24974540 | MS.gene26434:CDS |
| ACATAGTTGTTGCTTGGAGA+GGG | 0.533659 | 4.4:+24973406 | MS.gene26434:CDS |
| CTAAGGAAGCATTAGGGAGG+AGG | 0.534094 | 4.4:+24973382 | MS.gene26434:CDS |
| AACTTAGTGGCAAAAGTAAG+TGG | 0.534655 | 4.4:+24972842 | MS.gene26434:CDS |
| GAAATTAGCATAACTGTCGT+TGG | 0.536154 | 4.4:+24974464 | MS.gene26434:CDS |
| CCAAATGCAAATAATGTGAC+AGG | 0.536537 | 4.4:-24974581 | None:intergenic |
| TCTTCTTGCATATTCAAAGG+TGG | 0.538213 | 4.4:+24974709 | MS.gene26434:CDS |
| ATCACATTCCTGAGAATTGG+AGG | 0.538539 | 4.4:+24974915 | MS.gene26434:CDS |
| GCAGGAACACAAGGAAGTAA+AGG | 0.539942 | 4.4:+24974821 | MS.gene26434:CDS |
| GATTTAGGACCGAATATAAG+TGG | 0.540170 | 4.4:-24973483 | None:intergenic |
| TCTTCTTCTTGCATATTCAA+AGG | 0.541516 | 4.4:+24974706 | MS.gene26434:CDS |
| AAACGAGATTAGCAGACTTG+TGG | 0.547519 | 4.4:+24974424 | MS.gene26434:CDS |
| TGGGGTTAGTGCACATAACA+TGG | 0.566949 | 4.4:+24974778 | MS.gene26434:CDS |
| AGTATGGAAACAAATTGGAT+GGG | 0.568664 | 4.4:+24973138 | MS.gene26434:CDS |
| GCATTTGGTTCACCTCGTGT+TGG | 0.574021 | 4.4:+24974596 | MS.gene26434:CDS |
| AAATCTAAGTACTTGAAGAG+TGG | 0.574558 | 4.4:+24974758 | MS.gene26434:CDS |
| GACATAGTTGTTGCTTGGAG+AGG | 0.575425 | 4.4:+24973405 | MS.gene26434:CDS |
| GTTGCTGTTGCCACTGATGA+AGG | 0.576148 | 4.4:+24973165 | MS.gene26434:CDS |
| TTCAACATTACCTTCATCAG+TGG | 0.579087 | 4.4:-24973175 | None:intergenic |
| TAAGGAAGCATTAGGGAGGA+GGG | 0.586465 | 4.4:+24973383 | MS.gene26434:CDS |
| TTACGTAGGTCAATGTGTAA+AGG | 0.596130 | 4.4:-24972880 | None:intergenic |
| GGTAGTGGAGAATAAGGGTA+TGG | 0.610905 | 4.4:+24974937 | MS.gene26434:CDS |
| GGAACACAAGGAAGTAAAGG+AGG | 0.618211 | 4.4:+24974824 | MS.gene26434:CDS |
| GGTATGGTTCAACAATCTGA+TGG | 0.619750 | 4.4:+24974953 | MS.gene26434:CDS |
| AGTGGCAAAAGTAAGTGGAA+AGG | 0.625837 | 4.4:+24972847 | MS.gene26434:CDS |
| GTATGGAAACAAATTGGATG+GGG | 0.630148 | 4.4:+24973139 | MS.gene26434:CDS |
| TCGAATGTGCAGTTACACAA+TGG | 0.630838 | 4.4:+24973504 | MS.gene26434:CDS |
| TGGGTAGCATAGCAAGAACA+TGG | 0.635845 | 4.4:+24972815 | MS.gene26434:CDS |
| GTCGTTGGACACAGCTTGGG+TGG | 0.639883 | 4.4:+24974479 | MS.gene26434:CDS |
| AGAACATGGAGAGAACTTAG+TGG | 0.643312 | 4.4:+24972829 | MS.gene26434:CDS |
| GAGGAATTAGAAATCGACGC+TGG | 0.655608 | 4.4:+24974734 | MS.gene26434:CDS |
| TCACATTCCTGAGAATTGGA+GGG | 0.662081 | 4.4:+24974916 | MS.gene26434:CDS |
| ATCTAAGTACTTGAAGAGTG+GGG | 0.675113 | 4.4:+24974760 | MS.gene26434:CDS |
| AAGTTAGAATTTCCAACACG+AGG | 0.679774 | 4.4:-24974608 | None:intergenic |
| GAACACAAGGAAGTAAAGGA+GGG | 0.689646 | 4.4:+24974825 | MS.gene26434:CDS |
| AATGTAGTAAGTACTTACGT+AGG | 0.694414 | 4.4:-24972894 | None:intergenic |
| CAGCTAAGGAAGCATTAGGG+AGG | 0.703114 | 4.4:+24973379 | MS.gene26434:intron |
| GGACAATTCAGGGTGCAGAG+TGG | 0.708525 | 4.4:+24973427 | MS.gene26434:CDS |
| GGTTAGTGCACATAACATGG+AGG | 0.759022 | 4.4:+24974781 | MS.gene26434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTATAACTTTTTT+TGG | + | chr4.4:24974149-24974168 | MS.gene26434:intron | 10.0% |
| !!! | TCAAAATTTTAATATTGATT+TGG | + | chr4.4:24973452-24973471 | MS.gene26434:CDS | 10.0% |
| !!! | TTTAATTTTACTATGTATTT+AGG | - | chr4.4:24974195-24974214 | None:intergenic | 10.0% |
| !! | AAATTTCTATAAGTAAACTT+AGG | - | chr4.4:24973900-24973919 | None:intergenic | 15.0% |
| !! | AACTTAATAAAGAAAACTTT+AGG | - | chr4.4:24973982-24974001 | None:intergenic | 15.0% |
| !!! | ATATTTATAGTACTTGATTT+TGG | + | chr4.4:24974354-24974373 | MS.gene26434:intron | 15.0% |
| !!! | TAGAAATTCACTTTTTTTTA+AGG | - | chr4.4:24973844-24973863 | None:intergenic | 15.0% |
| !! | AGCATAACTTAATAATCTTA+AGG | - | chr4.4:24974078-24974097 | None:intergenic | 20.0% |
| !! | CTATTAAACAAAAGTAATGA+TGG | + | chr4.4:24974878-24974897 | MS.gene26434:CDS | 20.0% |
| !! | TATTAGTAAAAGTTGTAAGT+TGG | - | chr4.4:24973340-24973359 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAGATTTTTTT+TGG | - | chr4.4:24974313-24974332 | None:intergenic | 20.0% |
| !!! | CTTAACTTCAATATTTTCAA+AGG | + | chr4.4:24973107-24973126 | MS.gene26434:CDS | 20.0% |
| !!! | GTTATACTTTTTTTTGAAGA+AGG | - | chr4.4:24974143-24974162 | None:intergenic | 20.0% |
| !!! | GTTTTTTAACATTTGTAATG+TGG | + | chr4.4:24974385-24974404 | MS.gene26434:intron | 20.0% |
| !!! | TAATTGTCGTTATTCTAAAA+AGG | + | chr4.4:24972981-24973000 | MS.gene26434:intron | 20.0% |
| !!! | TACTATGTATTTAGGTTATA+GGG | - | chr4.4:24974187-24974206 | None:intergenic | 20.0% |
| !!! | TTAAACAATTTTAACAGCTA+AGG | + | chr4.4:24973365-24973384 | MS.gene26434:intron | 20.0% |
| !!! | TTACTATGTATTTAGGTTAT+AGG | - | chr4.4:24974188-24974207 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCCAAAGTATATT+TGG | + | chr4.4:24973005-24973024 | MS.gene26434:intron | 20.0% |
| ! | AAATTGAGCATAATAAGTGT+AGG | + | chr4.4:24973267-24973286 | MS.gene26434:intron | 25.0% |
| ! | AATCAATTCAACATACCAAA+AGG | + | chr4.4:24974539-24974558 | MS.gene26434:CDS | 25.0% |
| ! | AATTGAGCATAATAAGTGTA+GGG | + | chr4.4:24973268-24973287 | MS.gene26434:intron | 25.0% |
| ! | AGATTAAACGTTCTATATGT+AGG | + | chr4.4:24973782-24973801 | MS.gene26434:intron | 25.0% |
| ! | AGCAGAAAAAGTTTAGTTAA+AGG | - | chr4.4:24974256-24974275 | None:intergenic | 25.0% |
| ! | ATAAGTTCTATGGATATAGT+TGG | + | chr4.4:24974515-24974534 | MS.gene26434:CDS | 25.0% |
| ! | ATCAATTCAACATACCAAAA+GGG | + | chr4.4:24974540-24974559 | MS.gene26434:CDS | 25.0% |
| ! | ATTAAACGTTCTATATGTAG+GGG | + | chr4.4:24973784-24973803 | MS.gene26434:intron | 25.0% |
| ! | GATTAAACGTTCTATATGTA+GGG | + | chr4.4:24973783-24973802 | MS.gene26434:intron | 25.0% |
| ! | TAGATATTATGTAGCATTAC+CGG | - | chr4.4:24973626-24973645 | None:intergenic | 25.0% |
| ! | TCCAAAGTATATTTGGAAAA+AGG | + | chr4.4:24973012-24973031 | MS.gene26434:intron | 25.0% |
| ! | TGATTTATTGTAGTTTAGCT+AGG | - | chr4.4:24973312-24973331 | None:intergenic | 25.0% |
| ! | TTGTAATGTGGCATATATAA+AGG | + | chr4.4:24974397-24974416 | MS.gene26434:intron | 25.0% |
| !! | ACCTTTTTCCAAATATACTT+TGG | - | chr4.4:24973016-24973035 | None:intergenic | 25.0% |
| !! | ACTATGTATTTAGGTTATAG+GGG | - | chr4.4:24974186-24974205 | None:intergenic | 25.0% |
| !! | ATTTTTGTGTTATAGATCAC+CGG | + | chr4.4:24973604-24973623 | MS.gene26434:intron | 25.0% |
| !! | TACTTGAAGTATTATCTTAG+TGG | - | chr4.4:24974105-24974124 | None:intergenic | 25.0% |
| !! | TTAAACAAATTTGAGACCTA+TGG | + | chr4.4:24974210-24974229 | MS.gene26434:intron | 25.0% |
| !!! | TTTAACTAAACTTTTTCTGC+TGG | + | chr4.4:24974255-24974274 | MS.gene26434:intron | 25.0% |
| AAATCTAAGTACTTGAAGAG+TGG | + | chr4.4:24974758-24974777 | MS.gene26434:CDS | 30.0% | |
| AATATCACATTCCTGAGAAT+TGG | + | chr4.4:24974912-24974931 | MS.gene26434:CDS | 30.0% | |
| AATCTAAGTACTTGAAGAGT+GGG | + | chr4.4:24974759-24974778 | MS.gene26434:CDS | 30.0% | |
| AATGTAGTAAGTACTTACGT+AGG | - | chr4.4:24972897-24972916 | None:intergenic | 30.0% | |
| ACTTGCAACTATAAGTTCTA+TGG | + | chr4.4:24974505-24974524 | MS.gene26434:CDS | 30.0% | |
| AGTATGGAAACAAATTGGAT+GGG | + | chr4.4:24973138-24973157 | MS.gene26434:CDS | 30.0% | |
| CGTAAGTACTTACTACATTA+TGG | + | chr4.4:24972898-24972917 | MS.gene26434:CDS | 30.0% | |
| GAAGGTAATGTTGAAAAGTA+TGG | + | chr4.4:24973183-24973202 | MS.gene26434:intron | 30.0% | |
| TATGCAAGAAGAAGACTATT+TGG | - | chr4.4:24974701-24974720 | None:intergenic | 30.0% | |
| TCTTCTTCTTGCATATTCAA+AGG | + | chr4.4:24974706-24974725 | MS.gene26434:CDS | 30.0% | |
| TTAAACGTTCTATATGTAGG+GGG | + | chr4.4:24973785-24973804 | MS.gene26434:intron | 30.0% | |
| ! | CAATATTTTCAAAGGATGCT+TGG | + | chr4.4:24973115-24973134 | MS.gene26434:CDS | 30.0% |
| ! | TAAAGGAGGGTTTAATTTAG+AGG | + | chr4.4:24974838-24974857 | MS.gene26434:CDS | 30.0% |
| ! | TGATGGTTTCAACTTTGAAA+AGG | + | chr4.4:24972942-24972961 | MS.gene26434:CDS | 30.0% |
| !!! | TTTTTTTGTCAAGTAGCACA+TGG | - | chr4.4:24973868-24973887 | None:intergenic | 30.0% |
| AACATGGAGGTTTATTTGCA+TGG | + | chr4.4:24974794-24974813 | MS.gene26434:CDS | 35.0% | |
| AACTTAGTGGCAAAAGTAAG+TGG | + | chr4.4:24972842-24972861 | MS.gene26434:CDS | 35.0% | |
| AAGTAAGTGGAAAGGTCTAT+TGG | + | chr4.4:24972855-24972874 | MS.gene26434:CDS | 35.0% | |
| AAGTTAGAATTTCCAACACG+AGG | - | chr4.4:24974611-24974630 | None:intergenic | 35.0% | |
| ATCTAAGTACTTGAAGAGTG+GGG | + | chr4.4:24974760-24974779 | MS.gene26434:CDS | 35.0% | |
| CCAAATGCAAATAATGTGAC+AGG | - | chr4.4:24974584-24974603 | None:intergenic | 35.0% | |
| CCTGTCACATTATTTGCATT+TGG | + | chr4.4:24974581-24974600 | MS.gene26434:CDS | 35.0% | |
| CTTCTTGCATATTCAAAGGT+GGG | + | chr4.4:24974710-24974729 | MS.gene26434:CDS | 35.0% | |
| CTTGGAGTATGGAAACAAAT+TGG | + | chr4.4:24973133-24973152 | MS.gene26434:CDS | 35.0% | |
| GAAATTAGCATAACTGTCGT+TGG | + | chr4.4:24974464-24974483 | MS.gene26434:CDS | 35.0% | |
| GAGTATGGAAACAAATTGGA+TGG | + | chr4.4:24973137-24973156 | MS.gene26434:CDS | 35.0% | |
| GGATGTTGCATACAAATACT+TGG | - | chr4.4:24973061-24973080 | None:intergenic | 35.0% | |
| GTATGGAAACAAATTGGATG+GGG | + | chr4.4:24973139-24973158 | MS.gene26434:CDS | 35.0% | |
| GTTTATTTGCATGGAATTGC+AGG | + | chr4.4:24974803-24974822 | MS.gene26434:CDS | 35.0% | |
| TCTTCTTGCATATTCAAAGG+TGG | + | chr4.4:24974709-24974728 | MS.gene26434:CDS | 35.0% | |
| TGATTCTAGTGCTAGAAAAC+AGG | + | chr4.4:24973572-24973591 | MS.gene26434:CDS | 35.0% | |
| TGTAACTGCACATTCGATTT+AGG | - | chr4.4:24973501-24973520 | None:intergenic | 35.0% | |
| TTACGTAGGTCAATGTGTAA+AGG | - | chr4.4:24972883-24972902 | None:intergenic | 35.0% | |
| TTCAACAATCTGATGGTACT+TGG | + | chr4.4:24974960-24974979 | MS.gene26434:CDS | 35.0% | |
| TTCAACATTACCTTCATCAG+TGG | - | chr4.4:24973178-24973197 | None:intergenic | 35.0% | |
| TTGGTCACAGAATACTTGTA+AGG | - | chr4.4:24973042-24973061 | None:intergenic | 35.0% | |
| TTTGCTCAAGCTACATATGA+TGG | + | chr4.4:24972925-24972944 | MS.gene26434:CDS | 35.0% | |
| ! | GATTTAGGACCGAATATAAG+TGG | - | chr4.4:24973486-24973505 | None:intergenic | 35.0% |
| !! | TAACAGCTAAGGAAGCATTA+GGG | + | chr4.4:24973376-24973395 | MS.gene26434:intron | 35.0% |
| !! | TTAACAGCTAAGGAAGCATT+AGG | + | chr4.4:24973375-24973394 | MS.gene26434:intron | 35.0% |
| AAACGAGATTAGCAGACTTG+TGG | + | chr4.4:24974424-24974443 | MS.gene26434:CDS | 40.0% | |
| AGAACATGGAGAGAACTTAG+TGG | + | chr4.4:24972829-24972848 | MS.gene26434:CDS | 40.0% | |
| AGTGGCAAAAGTAAGTGGAA+AGG | + | chr4.4:24972847-24972866 | MS.gene26434:CDS | 40.0% | |
| AGTTAAAGGCCCAGTCATTA+AGG | - | chr4.4:24974242-24974261 | None:intergenic | 40.0% | |
| ATCACATTCCTGAGAATTGG+AGG | + | chr4.4:24974915-24974934 | MS.gene26434:CDS | 40.0% | |
| ATGGCACTTACCTTAATGAC+TGG | + | chr4.4:24974229-24974248 | MS.gene26434:intron | 40.0% | |
| CTAGCACTAGAATCAGCTAT+TGG | - | chr4.4:24973567-24973586 | None:intergenic | 40.0% | |
| GAACACAAGGAAGTAAAGGA+GGG | + | chr4.4:24974825-24974844 | MS.gene26434:CDS | 40.0% | |
| GATCCTGCACCACTTATATT+CGG | + | chr4.4:24973474-24973493 | MS.gene26434:CDS | 40.0% | |
| GGTATGGTTCAACAATCTGA+TGG | + | chr4.4:24974953-24974972 | MS.gene26434:CDS | 40.0% | |
| GTCATTAAGGTAAGTGCCAT+AGG | - | chr4.4:24974229-24974248 | None:intergenic | 40.0% | |
| TCACATTCCTGAGAATTGGA+GGG | + | chr4.4:24974916-24974935 | MS.gene26434:CDS | 40.0% | |
| TCGAATGTGCAGTTACACAA+TGG | + | chr4.4:24973504-24973523 | MS.gene26434:CDS | 40.0% | |
| TGATGGTACTTGGAAGCTAA+TGG | + | chr4.4:24974970-24974989 | MS.gene26434:CDS | 40.0% | |
| TGGCACTTACCTTAATGACT+GGG | + | chr4.4:24974230-24974249 | MS.gene26434:intron | 40.0% | |
| TTCAAAGGATGCTTGGAGTA+TGG | + | chr4.4:24973122-24973141 | MS.gene26434:CDS | 40.0% | |
| ! | ACATAGTTGTTGCTTGGAGA+GGG | + | chr4.4:24973406-24973425 | MS.gene26434:CDS | 40.0% |
| !! | GAAAAGGCATCTAAGTATGC+AGG | + | chr4.4:24972958-24972977 | MS.gene26434:CDS | 40.0% |
| ACGTTCTATATGTAGGGGGT+AGG | + | chr4.4:24973789-24973808 | MS.gene26434:intron | 45.0% | |
| CATGGAATTGCAGGAACACA+AGG | + | chr4.4:24974812-24974831 | MS.gene26434:CDS | 45.0% | |
| CGTTCTATATGTAGGGGGTA+GGG | + | chr4.4:24973790-24973809 | MS.gene26434:intron | 45.0% | |
| GAGGAATTAGAAATCGACGC+TGG | + | chr4.4:24974734-24974753 | MS.gene26434:CDS | 45.0% | |
| GCAGGAACACAAGGAAGTAA+AGG | + | chr4.4:24974821-24974840 | MS.gene26434:CDS | 45.0% | |
| GGAACACAAGGAAGTAAAGG+AGG | + | chr4.4:24974824-24974843 | MS.gene26434:CDS | 45.0% | |
| GGTTAGTGCACATAACATGG+AGG | + | chr4.4:24974781-24974800 | MS.gene26434:CDS | 45.0% | |
| GTTCTATATGTAGGGGGTAG+GGG | + | chr4.4:24973791-24973810 | MS.gene26434:intron | 45.0% | |
| TGCATATTCAAAGGTGGGAG+AGG | + | chr4.4:24974715-24974734 | MS.gene26434:CDS | 45.0% | |
| TGGGTAGCATAGCAAGAACA+TGG | + | chr4.4:24972815-24972834 | MS.gene26434:CDS | 45.0% | |
| ! | GACATAGTTGTTGCTTGGAG+AGG | + | chr4.4:24973405-24973424 | MS.gene26434:CDS | 45.0% |
| ! | TGGGGTTAGTGCACATAACA+TGG | + | chr4.4:24974778-24974797 | MS.gene26434:CDS | 45.0% |
| !! | GGTAGTGGAGAATAAGGGTA+TGG | + | chr4.4:24974937-24974956 | MS.gene26434:CDS | 45.0% |
| !! | GTGACAGGACATGCTTTTTG+AGG | - | chr4.4:24974569-24974588 | None:intergenic | 45.0% |
| !! | TAAGGAAGCATTAGGGAGGA+GGG | + | chr4.4:24973383-24973402 | MS.gene26434:CDS | 45.0% |
| !! | TGGAGGGTAGTGGAGAATAA+GGG | + | chr4.4:24974932-24974951 | MS.gene26434:CDS | 45.0% |
| !! | TTGGAGGGTAGTGGAGAATA+AGG | + | chr4.4:24974931-24974950 | MS.gene26434:CDS | 45.0% |
| !!! | GCTTTTTGAGGTTGCCCTTT+TGG | - | chr4.4:24974557-24974576 | None:intergenic | 45.0% |
| !!! | ATAAAAATCATTTTTTTTAA+AGG | + | chr4.4:24974042-24974061 | MS.gene26434:intron | 5.0% |
| AACTGTCGTTGGACACAGCT+TGG | + | chr4.4:24974475-24974494 | MS.gene26434:CDS | 50.0% | |
| ACTGTCGTTGGACACAGCTT+GGG | + | chr4.4:24974476-24974495 | MS.gene26434:CDS | 50.0% | |
| CGCTGCACTATCTCTTGCTT+TGG | - | chr4.4:24973082-24973101 | None:intergenic | 50.0% | |
| GACAATTCAGGGTGCAGAGT+GGG | + | chr4.4:24973428-24973447 | MS.gene26434:CDS | 50.0% | |
| GCTTGGAGAGGGACAATTCA+GGG | + | chr4.4:24973417-24973436 | MS.gene26434:CDS | 50.0% | |
| GGACCGAATATAAGTGGTGC+AGG | - | chr4.4:24973480-24973499 | None:intergenic | 50.0% | |
| GGAGGGACATAGTTGTTGCT+TGG | + | chr4.4:24973400-24973419 | MS.gene26434:CDS | 50.0% | |
| TCCACTACCCTCCAATTCTC+AGG | - | chr4.4:24974926-24974945 | None:intergenic | 50.0% | |
| TCCTGAGAATTGGAGGGTAG+TGG | + | chr4.4:24974922-24974941 | MS.gene26434:CDS | 50.0% | |
| TGCTTGGAGAGGGACAATTC+AGG | + | chr4.4:24973416-24973435 | MS.gene26434:CDS | 50.0% | |
| ! | GCATTTGGTTCACCTCGTGT+TGG | + | chr4.4:24974596-24974615 | MS.gene26434:CDS | 50.0% |
| ! | GTTGCTGTTGCCACTGATGA+AGG | + | chr4.4:24973165-24973184 | MS.gene26434:CDS | 50.0% |
| !! | CAGCTAAGGAAGCATTAGGG+AGG | + | chr4.4:24973379-24973398 | MS.gene26434:intron | 50.0% |
| !! | CTAAGGAAGCATTAGGGAGG+AGG | + | chr4.4:24973382-24973401 | MS.gene26434:CDS | 50.0% |
| GGACAATTCAGGGTGCAGAG+TGG | + | chr4.4:24973427-24973446 | MS.gene26434:CDS | 55.0% | |
| GTCGTTGGACACAGCTTGGG+TGG | + | chr4.4:24974479-24974498 | MS.gene26434:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24972814 | 24975036 | 24972814 | ID=MS.gene26434 |
| chr4.4 | mRNA | 24972814 | 24975036 | 24972814 | ID=MS.gene26434.t1;Parent=MS.gene26434 |
| chr4.4 | exon | 24972814 | 24972979 | 24972814 | ID=MS.gene26434.t1.exon1;Parent=MS.gene26434.t1 |
| chr4.4 | CDS | 24972814 | 24972979 | 24972814 | ID=cds.MS.gene26434.t1;Parent=MS.gene26434.t1 |
| chr4.4 | exon | 24973019 | 24973186 | 24973019 | ID=MS.gene26434.t1.exon2;Parent=MS.gene26434.t1 |
| chr4.4 | CDS | 24973019 | 24973186 | 24973019 | ID=cds.MS.gene26434.t1;Parent=MS.gene26434.t1 |
| chr4.4 | exon | 24973382 | 24973593 | 24973382 | ID=MS.gene26434.t1.exon3;Parent=MS.gene26434.t1 |
| chr4.4 | CDS | 24973382 | 24973593 | 24973382 | ID=cds.MS.gene26434.t1;Parent=MS.gene26434.t1 |
| chr4.4 | exon | 24974419 | 24975036 | 24974419 | ID=MS.gene26434.t1.exon4;Parent=MS.gene26434.t1 |
| chr4.4 | CDS | 24974419 | 24975036 | 24974419 | ID=cds.MS.gene26434.t1;Parent=MS.gene26434.t1 |
| Gene Sequence |
| Protein sequence |
