AlfalfaGEDB | MS.gene058450

M. sativa cultivar XinJiangDaYe / MS.gene058450

KEGG: -
GO: GO:0000155 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0007165 GO:0008150 GO:0009987 GO:0016301 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0050789 GO:0050794 GO:0065007 GO:0140096 GO:0140299
PFAM: PF00512.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058450.t1	XP_013465848.1	91.2	386	33	1	1	386	1	385	1.30E-188	669.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058450.t1	Q3S4A7	63.5	392	130	4	2	386	42	427	6.4e-125	448.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058450.t1	A0A072VD15	91.2	386	33	1	1	386	1	385	9.0e-189	669.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene058450	0.836343	9.89E-57	-1.69E-46
MS.gene05240	MS.gene058450	0.823324	1.47E-53	-1.69E-46
MS.gene054146	MS.gene058450	0.804037	2.62E-49	-1.69E-46
MS.gene054277	MS.gene058450	0.840998	6.20E-58	-1.69E-46
MS.gene058381	MS.gene058450	0.803167	3.97E-49	-1.69E-46
MS.gene058450	MS.gene061092	0.803713	3.06E-49	-1.69E-46
MS.gene058450	MS.gene061094	0.801833	7.47E-49	-1.69E-46
MS.gene058450	MS.gene063436	0.813254	2.81E-51	-1.69E-46
MS.gene058450	MS.gene063988	0.823536	1.31E-53	-1.69E-46
MS.gene058450	MS.gene064364	0.800549	1.37E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene058450.t1	MTR_1g014670	90.956	387	34	1	1	387	1	386	716
MS.gene058450.t1	MTR_1g013360	83.544	395	55	2	2	386	43	437	657
MS.gene058450.t1	MTR_3g105590	76.396	394	83	3	2	386	39	431	606

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058450.t1	AT5G10720	63.520	392	130	4	2	386	42	427	2.15e-160	474
MS.gene058450.t1	AT5G10680	46.212	132	53	4	1	122	37	160	1.64e-23	98.6
MS.gene058450.t1	AT5G10680	46.212	132	53	4	1	122	37	160	1.64e-23	98.6

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Find 59 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCCGGATTCAATAT+TGG	0.341750	1.4:+7169817	MS.gene058450:CDS
AAACAAAAGAATTGAAATTG+AGG	0.507015	1.4:+7169877	MS.gene058450:CDS
AACAATTGGAGTAAACCATA+TGG	0.430971	1.4:+7170723	MS.gene058450:CDS
AACGATTGGAGGGAAGTATT+CGG	0.430328	1.4:+7169951	MS.gene058450:CDS
AAGAGAGAAGTAATGGAGAC+AGG	0.390568	1.4:+7170604	MS.gene058450:CDS
AATAAAACTATTTACATTAC+AGG	0.248651	1.4:+7171185	MS.gene058450:CDS
AATGAGAGCAAAACAAGTGC+TGG	0.527084	1.4:+7171303	MS.gene058450:CDS
AATTGCAGTTCAGAAAGCCA+AGG	0.648370	1.4:+7171151	MS.gene058450:CDS
ACAATTGGAGTAAACCATAT+GGG	0.538203	1.4:+7170724	MS.gene058450:CDS
ACACCATCCAATATTGAATC+CGG	0.501464	1.4:-7169824	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATCCGGATTCAATAT+TGG	+	chr1.4:7169817-7169836	MS.gene058450:CDS	30.0%
AACAATTGGAGTAAACCATA+TGG	+	chr1.4:7170723-7170742	MS.gene058450:CDS	30.0%
ACAATTGGAGTAAACCATAT+GGG	+	chr1.4:7170724-7170743	MS.gene058450:CDS	30.0%
ACCTGCATTGTCTTAAAATT+TGG	+	chr1.4:7170796-7170815	MS.gene058450:intron	30.0%
AGAAAAAATGGCAAAGCTAA+GGG	+	chr1.4:7171124-7171143	MS.gene058450:CDS	30.0%
AGAAGAAGTAACAATCTTAG+AGG	+	chr1.4:7169562-7169581	MS.gene058450:CDS	30.0%
AGGATATGTGTTTATAAGTG+GGG	+	chr1.4:7171010-7171029	MS.gene058450:intron	30.0%
CAAAACTTGATAGAGAACAA+AGG	+	chr1.4:7171395-7171414	MS.gene058450:CDS	30.0%
CCTGCATTGTCTTAAAATTT+GGG	+	chr1.4:7170797-7170816	MS.gene058450:intron	30.0%
GGTGAGAAAAAGAGAAAAAA+TGG	+	chr1.4:7171112-7171131	MS.gene058450:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	7169545	7171498	7169545	ID=MS.gene058450
chr1.4	mRNA	7169545	7171498	7169545	ID=MS.gene058450.t1;Parent=MS.gene058450
chr1.4	exon	7169545	7170126	7169545	ID=MS.gene058450.t1.exon1;Parent=MS.gene058450.t1
chr1.4	CDS	7169545	7170126	7169545	ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1
chr1.4	exon	7170318	7170374	7170318	ID=MS.gene058450.t1.exon2;Parent=MS.gene058450.t1
chr1.4	CDS	7170318	7170374	7170318	ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1
chr1.4	exon	7170538	7170765	7170538	ID=MS.gene058450.t1.exon3;Parent=MS.gene058450.t1
chr1.4	CDS	7170538	7170765	7170538	ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1
chr1.4	exon	7171113	7171206	7171113	ID=MS.gene058450.t1.exon4;Parent=MS.gene058450.t1
chr1.4	CDS	7171113	7171206	7171113	ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1
chr1.4	exon	7171296	7171498	7171296	ID=MS.gene058450.t1.exon5;Parent=MS.gene058450.t1
chr1.4	CDS	7171296	7171498	7171296	ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1

Gene Sequence

>MS.gene058450

ATGGATCAAGATATTTTAGAAGAAGTAACAATCTTAGAGGAACCAATTATAGCTGATTTTCAAAGAATTGTGGAGCTTACAGATTATACAGATATAGCGTCTTCTCAGTTAGCTAATCTCACGAAACATTGGGAGTATAAGCAGGCGAATGCAGTTCGCCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAAGTTGAGCTTAAAAAGTGTGAGATACTTAAAGACAATAATGGATTTGAGGAAGAAAGCTACGGTGGAGAAAAACATCCGGATTCAATATTGGATGGTGTTGCAATCAGGAAAAATGACGCTGTCATTCAAAACAAAAGAATTGAAATTGAGGCCGAGTATGATGATGTTGTTTACTGGAAACATCGGTCACGAGATATGGAAAAACGATTGGAGGGAAGTATTCGGAGAGAAGAAATATTAAAAGAAAAGTTGCAAGAAAGTACAGAGATTATTGAAAGACAATCATCACCTGTGGAAGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATAGGCCATCAGGTACACTACAACGAGTATTTAGTTTCTTTCTTCTGTTGTTATTTGTTTAAGTGCTAAATGACTTGTAATCTTTTCAACTATATCAAATTTATGTTATGTGCAATAGTTACATTATATCTCATTTATTGTAATTTTAGTTGATTCATCATTTGAATGCTAAATTTGTGTTTGCCATTTCAATGAATTCCCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAACCATTTTCCAAGTTTAAAAGAGGAGGTAATGATTCTTGATGGAGGTCTTGTTGCAAGGTTATATGATTGAGTTGCATTGTGATTTTTTAAATTAAATAACAAACAACATAAAATTTGTAGTGAAACTTCTTTAGAATATAGTTTTCTTTTGTCTTCATGATTTATATTACTTGCACATAAATTTCTAGGACCTCATAGGAAAAACGGATGTTGAAATTTTCACGGGATCAGGTGTGAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGACAGGAATACCTGGAAAAAGGGAAATAACTTTTGAGACAGAACTGTTTGGATCAAAGACATTTTTGTTGTATGCAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTAAACCATATGGGAATGGAAATAACCGATCAGGTAAAAACTGTTACTTTGATTTTCGCTGTTACCTGCATTGTCTTAAAATTTGGGTTAGGCCTAACTCATCCTTACAAAACCAACTTGTAAGGTCTGGGTTGCCCCCCACTTATAAACAAATTTACAGGCCATATCTCATCCAATGTGGCCTATGAAGTGTGACCCGATATCAGGCAACTAAGGTCACGCTTCAGATGTCTAGTCCTGGGGGTAAGGGCGATTTGTTAGTAGTCTCACATTGGATAGGATATGTGTTTATAAGTGGGGGATGTCTTCACCAAATTCTAATACCTTTCAATCTTGTTTTTGTGCAAAAAAAAATTTATAATTTCGACAAACAATTGCAGGTGAGAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACGGAACTTAATAAAACTATTTACATTACAGGTTTAATCAGTCAATCCAAATTTTGATTTATGAATTTCAATATCACACTTTAATTTACTTATTATTGTTTTCTTGACCCCTTGTAATAGAGGAGACAATGAGAGCAAAACAAGTGCTGGCAACAATGTCTCACGAGATAAGATCACCACTTTCTGATGTTGTTAGCATGGCTAAAATTCTTACTACAACAAAACTTGATAGAGAACAAAGGCAGCTCTTGGATGCCATGATATCTTCAGGAGATTTGGTTCTTCAACATATTACTGATATACTTGATCCTTCCAAGGGTTAG

Protein sequence

>MS.gene058450.t1

MDQDILEEVTILEEPIIADFQRIVELTDYTDIASSQLANLTKHWEYKQANAVRLLREELDNLSKQREEVELKKCEILKDNNGFEEESYGGEKHPDSILDGVAIRKNDAVIQNKRIEIEAEYDDVVYWKHRSRDMEKRLEGSIRREEILKEKLQESTEIIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLKEEDLIGKTDVEIFTGSGVKESQDFKREVMETGIPGKREITFETELFGSKTFLLYAEPVFSKAGETIGVNHMGMEITDQVRKREKMAKLREEIAVQKAKETELNKTIYITEETMRAKQVLATMSHEIRSPLSDVVSMAKILTTTKLDREQRQLLDAMISSGDLVLQHITDILDPSKG