Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058450.t1 | XP_013465848.1 | 91.2 | 386 | 33 | 1 | 1 | 386 | 1 | 385 | 1.30E-188 | 669.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058450.t1 | Q3S4A7 | 63.5 | 392 | 130 | 4 | 2 | 386 | 42 | 427 | 6.4e-125 | 448.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058450.t1 | A0A072VD15 | 91.2 | 386 | 33 | 1 | 1 | 386 | 1 | 385 | 9.0e-189 | 669.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene058450 | 0.836343 | 9.89E-57 | -1.69E-46 |
| MS.gene05240 | MS.gene058450 | 0.823324 | 1.47E-53 | -1.69E-46 |
| MS.gene054146 | MS.gene058450 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene058450 | 0.840998 | 6.20E-58 | -1.69E-46 |
| MS.gene058381 | MS.gene058450 | 0.803167 | 3.97E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene061092 | 0.803713 | 3.06E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene061094 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene063436 | 0.813254 | 2.81E-51 | -1.69E-46 |
| MS.gene058450 | MS.gene063988 | 0.823536 | 1.31E-53 | -1.69E-46 |
| MS.gene058450 | MS.gene064364 | 0.800549 | 1.37E-48 | -1.69E-46 |
| MS.gene058450 | MS.gene065728 | 0.804076 | 2.57E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene06593 | 0.80003 | 1.74E-48 | -1.69E-46 |
| MS.gene058450 | MS.gene066417 | 0.818962 | 1.49E-52 | -1.69E-46 |
| MS.gene058450 | MS.gene066602 | 0.817404 | 3.36E-52 | -1.69E-46 |
| MS.gene058450 | MS.gene069482 | 0.830097 | 3.56E-55 | -1.69E-46 |
| MS.gene058450 | MS.gene072293 | 0.802756 | 4.82E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene073526 | 0.83017 | 3.41E-55 | -1.69E-46 |
| MS.gene058450 | MS.gene25134 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene058450 | MS.gene26434 | 0.802309 | 5.96E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene28548 | 0.810284 | 1.24E-50 | -1.69E-46 |
| MS.gene058450 | MS.gene37747 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene40846 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene058450 | MS.gene41490 | 0.827701 | 1.35E-54 | -1.69E-46 |
| MS.gene058450 | MS.gene42005 | 0.855361 | 6.64E-62 | -1.69E-46 |
| MS.gene058450 | MS.gene45893 | 0.8114 | 7.13E-51 | -1.69E-46 |
| MS.gene058450 | MS.gene47840 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene058450 | MS.gene50279 | 0.809962 | 1.46E-50 | -1.69E-46 |
| MS.gene058450 | MS.gene50420 | 0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene51595 | 0.825792 | 3.86E-54 | -1.69E-46 |
| MS.gene058450 | MS.gene54304 | 0.80142 | 9.08E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene60531 | 0.815565 | 8.66E-52 | -1.69E-46 |
| MS.gene058450 | MS.gene63444 | 0.805865 | 1.09E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene65144 | 0.807937 | 3.96E-50 | -1.69E-46 |
| MS.gene058450 | MS.gene69966 | 0.810948 | 8.94E-51 | -1.69E-46 |
| MS.gene058450 | MS.gene71342 | 0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene71346 | 0.824937 | 6.16E-54 | -1.69E-46 |
| MS.gene058450 | MS.gene74774 | 0.806613 | 7.56E-50 | -1.69E-46 |
| MS.gene058450 | MS.gene76662 | 0.801835 | 7.47E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene77325 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene78657 | 0.800786 | 1.22E-48 | -1.69E-46 |
| MS.gene058450 | MS.gene80468 | 0.844373 | 7.87E-59 | -1.69E-46 |
| MS.gene058450 | MS.gene80744 | 0.824455 | 8.00E-54 | -1.69E-46 |
| MS.gene058450 | MS.gene81503 | 0.821986 | 3.02E-53 | -1.69E-46 |
| MS.gene058450 | MS.gene81504 | 0.845054 | 5.16E-59 | -1.69E-46 |
| MS.gene058450 | MS.gene81505 | 0.835622 | 1.51E-56 | -1.69E-46 |
| MS.gene058450 | MS.gene81506 | 0.83818 | 3.35E-57 | -1.69E-46 |
| MS.gene058450 | MS.gene87346 | 0.806543 | 7.82E-50 | -1.69E-46 |
| MS.gene058450 | MS.gene87496 | 0.847205 | 1.34E-59 | -1.69E-46 |
| MS.gene058450 | MS.gene97600 | 0.801937 | 7.11E-49 | -1.69E-46 |
| MS.gene058450 | MS.gene98920 | 0.830757 | 2.45E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058450.t1 | MTR_1g014670 | 90.956 | 387 | 34 | 1 | 1 | 387 | 1 | 386 | 0.0 | 716 |
| MS.gene058450.t1 | MTR_1g013360 | 83.544 | 395 | 55 | 2 | 2 | 386 | 43 | 437 | 0.0 | 657 |
| MS.gene058450.t1 | MTR_3g105590 | 76.396 | 394 | 83 | 3 | 2 | 386 | 39 | 431 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058450.t1 | AT5G10720 | 63.520 | 392 | 130 | 4 | 2 | 386 | 42 | 427 | 2.15e-160 | 474 |
| MS.gene058450.t1 | AT5G10680 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.64e-23 | 98.6 |
| MS.gene058450.t1 | AT5G10680 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.64e-23 | 98.6 |
Find 59 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATGCACCTGTTGTTAT+AGG | 0.182020 | 1.4:+7170097 | MS.gene058450:CDS |
| CTTTGAAAATCAGCTATAAT+TGG | 0.203037 | 1.4:-7169587 | None:intergenic |
| AATAAAACTATTTACATTAC+AGG | 0.248651 | 1.4:+7171185 | MS.gene058450:CDS |
| CATGATATCTTCAGGAGATT+TGG | 0.274046 | 1.4:+7171432 | MS.gene058450:CDS |
| AGACAGGAATACCTGGAAAA+AGG | 0.288028 | 1.4:+7170620 | MS.gene058450:CDS |
| AAAACATCCGGATTCAATAT+TGG | 0.341750 | 1.4:+7169817 | MS.gene058450:CDS |
| AGAAGAAGTAACAATCTTAG+AGG | 0.346203 | 1.4:+7169562 | MS.gene058450:CDS |
| GAAACATCGGTCACGAGATA+TGG | 0.358103 | 1.4:+7169925 | MS.gene058450:CDS |
| AGTATGATGATGTTGTTTAC+TGG | 0.359184 | 1.4:+7169903 | MS.gene058450:CDS |
| AAGAGAGAAGTAATGGAGAC+AGG | 0.390568 | 1.4:+7170604 | MS.gene058450:CDS |
| CGGTTATTTCCATTCCCATA+TGG | 0.408058 | 1.4:-7170738 | None:intergenic |
| CTTCCTCCCTTTGTTTGCTA+AGG | 0.415873 | 1.4:-7169727 | None:intergenic |
| TAAAGGAAATTTCTAACCCT+TGG | 0.422342 | 1.4:-7171488 | None:intergenic |
| TTTATTAAGTTCCGTTTCCT+TGG | 0.423794 | 1.4:-7171168 | None:intergenic |
| TATTGGATGGTGTTGCAATC+AGG | 0.426610 | 1.4:+7169834 | MS.gene058450:CDS |
| ATAAATTTCTAGGACCTCAT+AGG | 0.429883 | 1.4:+7170526 | MS.gene058450:intron |
| AACGATTGGAGGGAAGTATT+CGG | 0.430328 | 1.4:+7169951 | MS.gene058450:CDS |
| AACAATTGGAGTAAACCATA+TGG | 0.430971 | 1.4:+7170723 | MS.gene058450:CDS |
| GAGATACTTAAAGACAATAA+TGG | 0.444436 | 1.4:+7169767 | MS.gene058450:CDS |
| TTGGATGCCATGATATCTTC+AGG | 0.452888 | 1.4:+7171424 | MS.gene058450:CDS |
| TAAAGACAATAATGGATTTG+AGG | 0.457522 | 1.4:+7169775 | MS.gene058450:CDS |
| TAGAGAACAAAGGCAGCTCT+TGG | 0.468770 | 1.4:+7171405 | MS.gene058450:CDS |
| CAAATCTCCTGAAGATATCA+TGG | 0.470277 | 1.4:-7171431 | None:intergenic |
| AGCAAGGCAGGAGAAACAAT+TGG | 0.472538 | 1.4:+7170709 | MS.gene058450:CDS |
| ACCTGTTGTTATAGGCCATC+AGG | 0.477859 | 1.4:+7170105 | MS.gene058450:CDS |
| AGCTAATCTCACGAAACATT+GGG | 0.482663 | 1.4:+7169655 | MS.gene058450:CDS |
| GGGAATGGAAATAACCGATC+AGG | 0.483035 | 1.4:+7170744 | MS.gene058450:CDS |
| ACCTGATGGCCTATAACAAC+AGG | 0.486112 | 1.4:-7170106 | None:intergenic |
| GAACCTGTGTTTAGCAAGGC+AGG | 0.487467 | 1.4:+7170697 | MS.gene058450:CDS |
| ACACCATCCAATATTGAATC+CGG | 0.501464 | 1.4:-7169824 | None:intergenic |
| AAACAAAAGAATTGAAATTG+AGG | 0.507015 | 1.4:+7169877 | MS.gene058450:CDS |
| TGATATACTTGATCCTTCCA+AGG | 0.522164 | 1.4:+7171471 | MS.gene058450:CDS |
| TGTCGAGCTCTTCTCGAAGA+AGG | 0.522863 | 1.4:-7169703 | None:intergenic |
| TAGCTAATCTCACGAAACAT+TGG | 0.523948 | 1.4:+7169654 | MS.gene058450:CDS |
| GGAAATTTCTAACCCTTGGA+AGG | 0.526937 | 1.4:-7171484 | None:intergenic |
| AATGAGAGCAAAACAAGTGC+TGG | 0.527084 | 1.4:+7171303 | MS.gene058450:CDS |
| ACTTTCTGATGTTGTTAGCA+TGG | 0.533367 | 1.4:+7171354 | MS.gene058450:CDS |
| CGACAACCTTAGCAAACAAA+GGG | 0.535427 | 1.4:+7169721 | MS.gene058450:CDS |
| ACAATTGGAGTAAACCATAT+GGG | 0.538203 | 1.4:+7170724 | MS.gene058450:CDS |
| TCTCCTGCCTTGCTAAACAC+AGG | 0.549002 | 1.4:-7170700 | None:intergenic |
| GTAATGGAGACAGGAATACC+TGG | 0.552703 | 1.4:+7170613 | MS.gene058450:CDS |
| CATCCGGATTCAATATTGGA+TGG | 0.554723 | 1.4:+7169821 | MS.gene058450:CDS |
| GAAACATTGGGAGTATAAGC+AGG | 0.554790 | 1.4:+7169667 | MS.gene058450:CDS |
| TGGAGTAAACCATATGGGAA+TGG | 0.555183 | 1.4:+7170729 | MS.gene058450:CDS |
| ATCTGTGACAGTTCTTCCAC+AGG | 0.563140 | 1.4:-7170037 | None:intergenic |
| AGTTCAGAAAGCCAAGGAAA+CGG | 0.563751 | 1.4:+7171157 | MS.gene058450:CDS |
| GATATACTTGATCCTTCCAA+GGG | 0.578728 | 1.4:+7171472 | MS.gene058450:CDS |
| ATGCTAACAACATCAGAAAG+TGG | 0.579722 | 1.4:-7171352 | None:intergenic |
| TCGACAACCTTAGCAAACAA+AGG | 0.586507 | 1.4:+7169720 | MS.gene058450:CDS |
| TGCAGAACCTGTGTTTAGCA+AGG | 0.605158 | 1.4:+7170693 | MS.gene058450:CDS |
| TTTCACGGGATCAGGTGTGA+AGG | 0.615122 | 1.4:+7170567 | MS.gene058450:CDS |
| ATGTTGTTTACTGGAAACAT+CGG | 0.642416 | 1.4:+7169912 | MS.gene058450:CDS |
| CAACCTTAGCAAACAAAGGG+AGG | 0.643459 | 1.4:+7169724 | MS.gene058450:CDS |
| GGATTTGAGGAAGAAAGCTA+CGG | 0.643602 | 1.4:+7169788 | MS.gene058450:CDS |
| TGAAAGACAATCATCACCTG+TGG | 0.646063 | 1.4:+7170021 | MS.gene058450:CDS |
| AATTGCAGTTCAGAAAGCCA+AGG | 0.648370 | 1.4:+7171151 | MS.gene058450:CDS |
| GTAAACAACATCATCATACT+CGG | 0.655371 | 1.4:-7169900 | None:intergenic |
| TTTGAGGAAGAAAGCTACGG+TGG | 0.675740 | 1.4:+7169791 | MS.gene058450:CDS |
| CAAAACTTGATAGAGAACAA+AGG | 0.676780 | 1.4:+7171395 | MS.gene058450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAACTATTTACATTAC+AGG | + | chr1.4:7171185-7171204 | MS.gene058450:CDS | 15.0% |
| !! | GAAATTCATAAATCAAAATT+TGG | - | chr1.4:7171225-7171244 | None:intergenic | 15.0% |
| !! | AAACAAAAGAATTGAAATTG+AGG | + | chr1.4:7169877-7169896 | MS.gene058450:CDS | 20.0% |
| !!! | CTGTAAATTTGTTTATAAGT+GGG | - | chr1.4:7170873-7170892 | None:intergenic | 20.0% |
| !!! | TGTAAATTTGTTTATAAGTG+GGG | - | chr1.4:7170872-7170891 | None:intergenic | 20.0% |
| ! | ATAGGATATGTGTTTATAAG+TGG | + | chr1.4:7171008-7171027 | MS.gene058450:intron | 25.0% |
| ! | CCACTTATAAACAAATTTAC+AGG | + | chr1.4:7170871-7170890 | MS.gene058450:intron | 25.0% |
| ! | GAGATACTTAAAGACAATAA+TGG | + | chr1.4:7169767-7169786 | MS.gene058450:CDS | 25.0% |
| ! | TAGGATATGTGTTTATAAGT+GGG | + | chr1.4:7171009-7171028 | MS.gene058450:intron | 25.0% |
| ! | TTACTTGCACATAAATTTCT+AGG | + | chr1.4:7170516-7170535 | MS.gene058450:intron | 25.0% |
| !! | ATTGTCTTAAAATTTGGGTT+AGG | + | chr1.4:7170802-7170821 | MS.gene058450:intron | 25.0% |
| !! | CCTGTAAATTTGTTTATAAG+TGG | - | chr1.4:7170874-7170893 | None:intergenic | 25.0% |
| !! | CTTTGAAAATCAGCTATAAT+TGG | - | chr1.4:7169590-7169609 | None:intergenic | 25.0% |
| !! | GTAAATTTGTTTATAAGTGG+GGG | - | chr1.4:7170871-7170890 | None:intergenic | 25.0% |
| !! | TAAATTTGTTTATAAGTGGG+GGG | - | chr1.4:7170870-7170889 | None:intergenic | 25.0% |
| !!! | AGATTTTAAGAGAGAAGTAA+TGG | + | chr1.4:7170597-7170616 | MS.gene058450:CDS | 25.0% |
| !!! | GATTGAAAGGTATTAGAATT+TGG | - | chr1.4:7171046-7171065 | None:intergenic | 25.0% |
| !!! | TAAAGACAATAATGGATTTG+AGG | + | chr1.4:7169775-7169794 | MS.gene058450:CDS | 25.0% |
| AAAACATCCGGATTCAATAT+TGG | + | chr1.4:7169817-7169836 | MS.gene058450:CDS | 30.0% | |
| AACAATTGGAGTAAACCATA+TGG | + | chr1.4:7170723-7170742 | MS.gene058450:CDS | 30.0% | |
| ACAATTGGAGTAAACCATAT+GGG | + | chr1.4:7170724-7170743 | MS.gene058450:CDS | 30.0% | |
| ACCTGCATTGTCTTAAAATT+TGG | + | chr1.4:7170796-7170815 | MS.gene058450:intron | 30.0% | |
| AGAAAAAATGGCAAAGCTAA+GGG | + | chr1.4:7171124-7171143 | MS.gene058450:CDS | 30.0% | |
| AGAAGAAGTAACAATCTTAG+AGG | + | chr1.4:7169562-7169581 | MS.gene058450:CDS | 30.0% | |
| AGGATATGTGTTTATAAGTG+GGG | + | chr1.4:7171010-7171029 | MS.gene058450:intron | 30.0% | |
| CAAAACTTGATAGAGAACAA+AGG | + | chr1.4:7171395-7171414 | MS.gene058450:CDS | 30.0% | |
| CCTGCATTGTCTTAAAATTT+GGG | + | chr1.4:7170797-7170816 | MS.gene058450:intron | 30.0% | |
| GGTGAGAAAAAGAGAAAAAA+TGG | + | chr1.4:7171112-7171131 | MS.gene058450:intron | 30.0% | |
| GTAAACAACATCATCATACT+CGG | - | chr1.4:7169903-7169922 | None:intergenic | 30.0% | |
| TAATTTCGACAAACAATTGC+AGG | + | chr1.4:7171091-7171110 | MS.gene058450:intron | 30.0% | |
| TGCACAAAAACAAGATTGAA+AGG | - | chr1.4:7171059-7171078 | None:intergenic | 30.0% | |
| TTTATTAAGTTCCGTTTCCT+TGG | - | chr1.4:7171171-7171190 | None:intergenic | 30.0% | |
| ! | AACGGATGTTGAAATTTTCA+CGG | + | chr1.4:7170552-7170571 | MS.gene058450:CDS | 30.0% |
| ! | AGTAACAGTTTTTACCTGAT+CGG | - | chr1.4:7170761-7170780 | None:intergenic | 30.0% |
| ! | AGTATGATGATGTTGTTTAC+TGG | + | chr1.4:7169903-7169922 | MS.gene058450:CDS | 30.0% |
| ! | ATGTTGTTTACTGGAAACAT+CGG | + | chr1.4:7169912-7169931 | MS.gene058450:CDS | 30.0% |
| ! | ATTACCTCCTCTTTTAAACT+TGG | - | chr1.4:7170360-7170379 | None:intergenic | 30.0% |
| ! | ATTTGTTAGTAGTCTCACAT+TGG | + | chr1.4:7170985-7171004 | MS.gene058450:intron | 30.0% |
| ! | CCATTTTCCAAGTTTAAAAG+AGG | + | chr1.4:7170350-7170369 | MS.gene058450:CDS | 30.0% |
| ! | CCTCTTTTAAACTTGGAAAA+TGG | - | chr1.4:7170353-7170372 | None:intergenic | 30.0% |
| ! | TTTTCCAAGTTTAAAAGAGG+AGG | + | chr1.4:7170353-7170372 | MS.gene058450:CDS | 30.0% |
| !! | AAAGTTATTTCCCTTTTTCC+AGG | - | chr1.4:7170634-7170653 | None:intergenic | 30.0% |
| !! | AGCTGATTTTCAAAGAATTG+TGG | + | chr1.4:7169595-7169614 | MS.gene058450:CDS | 30.0% |
| !! | ATAAATTTCTAGGACCTCAT+AGG | + | chr1.4:7170526-7170545 | MS.gene058450:intron | 30.0% |
| AAAACCAACTTGTAAGGTCT+GGG | + | chr1.4:7170841-7170860 | MS.gene058450:intron | 35.0% | |
| ACACCATCCAATATTGAATC+CGG | - | chr1.4:7169827-7169846 | None:intergenic | 35.0% | |
| ACGAGATATGGAAAAACGAT+TGG | + | chr1.4:7169937-7169956 | MS.gene058450:CDS | 35.0% | |
| ACTTTCTGATGTTGTTAGCA+TGG | + | chr1.4:7171354-7171373 | MS.gene058450:CDS | 35.0% | |
| AGATATGGAAAAACGATTGG+AGG | + | chr1.4:7169940-7169959 | MS.gene058450:CDS | 35.0% | |
| AGCTAATCTCACGAAACATT+GGG | + | chr1.4:7169655-7169674 | MS.gene058450:CDS | 35.0% | |
| ATGCTAACAACATCAGAAAG+TGG | - | chr1.4:7171355-7171374 | None:intergenic | 35.0% | |
| ATTGTCTCCTCTATTACAAG+GGG | - | chr1.4:7171286-7171305 | None:intergenic | 35.0% | |
| CAAAATGCACCTGTTGTTAT+AGG | + | chr1.4:7170097-7170116 | MS.gene058450:CDS | 35.0% | |
| CAAATCTCCTGAAGATATCA+TGG | - | chr1.4:7171434-7171453 | None:intergenic | 35.0% | |
| CATGATATCTTCAGGAGATT+TGG | + | chr1.4:7171432-7171451 | MS.gene058450:CDS | 35.0% | |
| CATTGTCTCCTCTATTACAA+GGG | - | chr1.4:7171287-7171306 | None:intergenic | 35.0% | |
| CCTTACAAAACCAACTTGTA+AGG | + | chr1.4:7170835-7170854 | MS.gene058450:intron | 35.0% | |
| GAGAAAAAATGGCAAAGCTA+AGG | + | chr1.4:7171123-7171142 | MS.gene058450:CDS | 35.0% | |
| GATATACTTGATCCTTCCAA+GGG | + | chr1.4:7171472-7171491 | MS.gene058450:CDS | 35.0% | |
| GATATGGAAAAACGATTGGA+GGG | + | chr1.4:7169941-7169960 | MS.gene058450:CDS | 35.0% | |
| GGATATGTGTTTATAAGTGG+GGG | + | chr1.4:7171011-7171030 | MS.gene058450:intron | 35.0% | |
| TAGCTAATCTCACGAAACAT+TGG | + | chr1.4:7169654-7169673 | MS.gene058450:CDS | 35.0% | |
| TCATTGTCTCCTCTATTACA+AGG | - | chr1.4:7171288-7171307 | None:intergenic | 35.0% | |
| TGATATACTTGATCCTTCCA+AGG | + | chr1.4:7171471-7171490 | MS.gene058450:CDS | 35.0% | |
| TTAGTAGTCTCACATTGGAT+AGG | + | chr1.4:7170990-7171009 | MS.gene058450:intron | 35.0% | |
| ! | ACGGATGTTGAAATTTTCAC+GGG | + | chr1.4:7170553-7170572 | MS.gene058450:CDS | 35.0% |
| !!! | ACTTTTGAGACAGAACTGTT+TGG | + | chr1.4:7170649-7170668 | MS.gene058450:CDS | 35.0% |
| !!! | CCCAAATTTTAAGACAATGC+AGG | - | chr1.4:7170800-7170819 | None:intergenic | 35.0% |
| !!! | CCTTACAAGTTGGTTTTGTA+AGG | - | chr1.4:7170838-7170857 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTAAGGATGAGTT+AGG | - | chr1.4:7170828-7170847 | None:intergenic | 35.0% |
| AATGAGAGCAAAACAAGTGC+TGG | + | chr1.4:7171303-7171322 | MS.gene058450:CDS | 40.0% | |
| AATTGCAGTTCAGAAAGCCA+AGG | + | chr1.4:7171151-7171170 | MS.gene058450:CDS | 40.0% | |
| AGACAGGAATACCTGGAAAA+AGG | + | chr1.4:7170620-7170639 | MS.gene058450:CDS | 40.0% | |
| AGTTCAGAAAGCCAAGGAAA+CGG | + | chr1.4:7171157-7171176 | MS.gene058450:CDS | 40.0% | |
| CAAAACCAACTTGTAAGGTC+TGG | + | chr1.4:7170840-7170859 | MS.gene058450:intron | 40.0% | |
| CATCCGGATTCAATATTGGA+TGG | + | chr1.4:7169821-7169840 | MS.gene058450:CDS | 40.0% | |
| CGACAACCTTAGCAAACAAA+GGG | + | chr1.4:7169721-7169740 | MS.gene058450:CDS | 40.0% | |
| CTAGGACCTCATAGGAAAAA+CGG | + | chr1.4:7170534-7170553 | MS.gene058450:intron | 40.0% | |
| GACAGGAATACCTGGAAAAA+GGG | + | chr1.4:7170621-7170640 | MS.gene058450:CDS | 40.0% | |
| GAGGAGGTAATGATTCTTGA+TGG | + | chr1.4:7170369-7170388 | MS.gene058450:intron | 40.0% | |
| GAGGTAATGATTCTTGATGG+AGG | + | chr1.4:7170372-7170391 | MS.gene058450:intron | 40.0% | |
| GGATTTGAGGAAGAAAGCTA+CGG | + | chr1.4:7169788-7169807 | MS.gene058450:CDS | 40.0% | |
| GTCCTGGGAATTCATTGAAA+TGG | - | chr1.4:7170301-7170320 | None:intergenic | 40.0% | |
| TCGACAACCTTAGCAAACAA+AGG | + | chr1.4:7169720-7169739 | MS.gene058450:CDS | 40.0% | |
| TGAAAGACAATCATCACCTG+TGG | + | chr1.4:7170021-7170040 | MS.gene058450:CDS | 40.0% | |
| TGACCTTAGTTGCCTGATAT+CGG | - | chr1.4:7170932-7170951 | None:intergenic | 40.0% | |
| TGGAGTAAACCATATGGGAA+TGG | + | chr1.4:7170729-7170748 | MS.gene058450:CDS | 40.0% | |
| TTCTTGACCCCTTGTAATAG+AGG | + | chr1.4:7171276-7171295 | MS.gene058450:intron | 40.0% | |
| TTGGATGCCATGATATCTTC+AGG | + | chr1.4:7171424-7171443 | MS.gene058450:CDS | 40.0% | |
| ! | AAGAGAGAAGTAATGGAGAC+AGG | + | chr1.4:7170604-7170623 | MS.gene058450:CDS | 40.0% |
| ! | CGGTTATTTCCATTCCCATA+TGG | - | chr1.4:7170741-7170760 | None:intergenic | 40.0% |
| ! | GAAACATTGGGAGTATAAGC+AGG | + | chr1.4:7169667-7169686 | MS.gene058450:CDS | 40.0% |
| ! | GTTGAAATTTTCACGGGATC+AGG | + | chr1.4:7170559-7170578 | MS.gene058450:CDS | 40.0% |
| ! | TGCCATTTCAATGAATTCCC+AGG | + | chr1.4:7170296-7170315 | MS.gene058450:intron | 40.0% |
| !! | AACGATTGGAGGGAAGTATT+CGG | + | chr1.4:7169951-7169970 | MS.gene058450:CDS | 40.0% |
| !! | CAACATCCGTTTTTCCTATG+AGG | - | chr1.4:7170543-7170562 | None:intergenic | 40.0% |
| !! | TATTGGATGGTGTTGCAATC+AGG | + | chr1.4:7169834-7169853 | MS.gene058450:CDS | 40.0% |
| ACCTGATGGCCTATAACAAC+AGG | - | chr1.4:7170109-7170128 | None:intergenic | 45.0% | |
| ACCTGTTGTTATAGGCCATC+AGG | + | chr1.4:7170105-7170124 | MS.gene058450:CDS | 45.0% | |
| ACTCGTTGTAGTGTACCTGA+TGG | - | chr1.4:7170123-7170142 | None:intergenic | 45.0% | |
| AGCAAGGCAGGAGAAACAAT+TGG | + | chr1.4:7170709-7170728 | MS.gene058450:CDS | 45.0% | |
| AGGCCACATTGGATGAGATA+TGG | - | chr1.4:7170897-7170916 | None:intergenic | 45.0% | |
| AGGCCATATCTCATCCAATG+TGG | + | chr1.4:7170891-7170910 | MS.gene058450:intron | 45.0% | |
| ATAGCGCAACTCTTTGTCCT+GGG | - | chr1.4:7170316-7170335 | None:intergenic | 45.0% | |
| ATCTGTGACAGTTCTTCCAC+AGG | - | chr1.4:7170040-7170059 | None:intergenic | 45.0% | |
| ATGAAGTGTGACCCGATATC+AGG | + | chr1.4:7170917-7170936 | MS.gene058450:intron | 45.0% | |
| CAACCTTAGCAAACAAAGGG+AGG | + | chr1.4:7169724-7169743 | MS.gene058450:CDS | 45.0% | |
| CTACGGTGGAGAAAAACATC+CGG | + | chr1.4:7169805-7169824 | MS.gene058450:CDS | 45.0% | |
| GAAACATCGGTCACGAGATA+TGG | + | chr1.4:7169925-7169944 | MS.gene058450:CDS | 45.0% | |
| GACCTTAGTTGCCTGATATC+GGG | - | chr1.4:7170931-7170950 | None:intergenic | 45.0% | |
| GATATCGGGTCACACTTCAT+AGG | - | chr1.4:7170917-7170936 | None:intergenic | 45.0% | |
| GGGAATGGAAATAACCGATC+AGG | + | chr1.4:7170744-7170763 | MS.gene058450:CDS | 45.0% | |
| TAGAGAACAAAGGCAGCTCT+TGG | + | chr1.4:7171405-7171424 | MS.gene058450:CDS | 45.0% | |
| TCACACTTCATAGGCCACAT+TGG | - | chr1.4:7170908-7170927 | None:intergenic | 45.0% | |
| TGCAGAACCTGTGTTTAGCA+AGG | + | chr1.4:7170693-7170712 | MS.gene058450:CDS | 45.0% | |
| TTTGAGGAAGAAAGCTACGG+TGG | + | chr1.4:7169791-7169810 | MS.gene058450:CDS | 45.0% | |
| ! | CTTCCTCCCTTTGTTTGCTA+AGG | - | chr1.4:7169730-7169749 | None:intergenic | 45.0% |
| ! | GTAATGGAGACAGGAATACC+TGG | + | chr1.4:7170613-7170632 | MS.gene058450:CDS | 45.0% |
| !! | TTGATGGAGGTCTTGTTGCA+AGG | + | chr1.4:7170385-7170404 | MS.gene058450:intron | 45.0% |
| ACGCTTCAGATGTCTAGTCC+TGG | + | chr1.4:7170951-7170970 | MS.gene058450:intron | 50.0% | |
| ATGTCTAGTCCTGGGGGTAA+GGG | + | chr1.4:7170960-7170979 | MS.gene058450:intron | 50.0% | |
| CGCTTCAGATGTCTAGTCCT+GGG | + | chr1.4:7170952-7170971 | MS.gene058450:intron | 50.0% | |
| CTTCAGATGTCTAGTCCTGG+GGG | + | chr1.4:7170954-7170973 | MS.gene058450:intron | 50.0% | |
| GAACCTGTGTTTAGCAAGGC+AGG | + | chr1.4:7170697-7170716 | MS.gene058450:CDS | 50.0% | |
| GACCCGATATCAGGCAACTA+AGG | + | chr1.4:7170926-7170945 | MS.gene058450:intron | 50.0% | |
| GATAGCGCAACTCTTTGTCC+TGG | - | chr1.4:7170317-7170336 | None:intergenic | 50.0% | |
| GCAACCCAGACCTTACAAGT+TGG | - | chr1.4:7170848-7170867 | None:intergenic | 50.0% | |
| GCTTCAGATGTCTAGTCCTG+GGG | + | chr1.4:7170953-7170972 | MS.gene058450:intron | 50.0% | |
| TCTCCTGCCTTGCTAAACAC+AGG | - | chr1.4:7170703-7170722 | None:intergenic | 50.0% | |
| TGTCGAGCTCTTCTCGAAGA+AGG | - | chr1.4:7169706-7169725 | None:intergenic | 50.0% | |
| TTTCACGGGATCAGGTGTGA+AGG | + | chr1.4:7170567-7170586 | MS.gene058450:CDS | 50.0% | |
| AACAAATCGCCCTTACCCCC+AGG | - | chr1.4:7170972-7170991 | None:intergenic | 55.0% | |
| GATGTCTAGTCCTGGGGGTA+AGG | + | chr1.4:7170959-7170978 | MS.gene058450:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 7169545 | 7171498 | 7169545 | ID=MS.gene058450 |
| chr1.4 | mRNA | 7169545 | 7171498 | 7169545 | ID=MS.gene058450.t1;Parent=MS.gene058450 |
| chr1.4 | exon | 7169545 | 7170126 | 7169545 | ID=MS.gene058450.t1.exon1;Parent=MS.gene058450.t1 |
| chr1.4 | CDS | 7169545 | 7170126 | 7169545 | ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1 |
| chr1.4 | exon | 7170318 | 7170374 | 7170318 | ID=MS.gene058450.t1.exon2;Parent=MS.gene058450.t1 |
| chr1.4 | CDS | 7170318 | 7170374 | 7170318 | ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1 |
| chr1.4 | exon | 7170538 | 7170765 | 7170538 | ID=MS.gene058450.t1.exon3;Parent=MS.gene058450.t1 |
| chr1.4 | CDS | 7170538 | 7170765 | 7170538 | ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1 |
| chr1.4 | exon | 7171113 | 7171206 | 7171113 | ID=MS.gene058450.t1.exon4;Parent=MS.gene058450.t1 |
| chr1.4 | CDS | 7171113 | 7171206 | 7171113 | ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1 |
| chr1.4 | exon | 7171296 | 7171498 | 7171296 | ID=MS.gene058450.t1.exon5;Parent=MS.gene058450.t1 |
| chr1.4 | CDS | 7171296 | 7171498 | 7171296 | ID=cds.MS.gene058450.t1;Parent=MS.gene058450.t1 |
| Gene Sequence |
| Protein sequence |
