Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26469.t1 | XP_024637220.1 | 96.8 | 221 | 7 | 0 | 1 | 221 | 1 | 221 | 3.20E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26469.t1 | Q9C5D0 | 60.9 | 238 | 76 | 4 | 1 | 221 | 1 | 238 | 2.7e-67 | 256.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26469.t1 | I3SNY2 | 96.8 | 221 | 7 | 0 | 1 | 221 | 1 | 221 | 2.3e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05216 | MS.gene26469 | 0.801681 | 8.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26469.t1 | MTR_4g485640 | 97.235 | 217 | 6 | 0 | 1 | 217 | 1 | 217 | 7.97e-148 | 427 |
| MS.gene26469.t1 | MTR_5g016770 | 72.353 | 170 | 45 | 1 | 51 | 218 | 52 | 221 | 3.04e-87 | 257 |
| MS.gene26469.t1 | MTR_5g016770 | 71.970 | 132 | 35 | 1 | 51 | 180 | 52 | 183 | 1.32e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26469.t1 | AT4G36910 | 65.657 | 198 | 65 | 2 | 23 | 218 | 37 | 233 | 1.96e-90 | 266 |
| MS.gene26469.t1 | AT4G34120 | 75.000 | 168 | 40 | 1 | 53 | 218 | 68 | 235 | 5.52e-88 | 259 |
Find 47 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGCAAAACGGTGTCGTTT+TGG | 0.339853 | 4.2:-25096396 | None:intergenic |
| TTAGCAATTGATACAATATC+AGG | 0.366237 | 4.2:+25097028 | MS.gene26469:CDS |
| CGGGACCGAATTAACGGTTT+GGG | 0.375449 | 4.2:-25096445 | None:intergenic |
| TTCATCCCAAACCGTTAATT+CGG | 0.378223 | 4.2:+25096440 | MS.gene26469:CDS |
| ACTTACCGGGACCGAATTAA+CGG | 0.381988 | 4.2:-25096451 | None:intergenic |
| CCGGGACCGAATTAACGGTT+TGG | 0.411227 | 4.2:-25096446 | None:intergenic |
| TGTTCATGAATCCACTAGTC+TGG | 0.413754 | 4.2:+25097977 | MS.gene26469:CDS |
| TCCCTGATGTGGACAGTACT+TGG | 0.414548 | 4.2:+25097383 | MS.gene26469:CDS |
| TTCCAAGTACTGTCCACATC+AGG | 0.416952 | 4.2:-25097385 | None:intergenic |
| CATAAAATCAGAAACTGTAT+AGG | 0.421566 | 4.2:-25096582 | None:intergenic |
| GAACAGAATAAGTGGTCTTC+CGG | 0.425551 | 4.2:+25096832 | MS.gene26469:CDS |
| TACTGTCCACATCAGGGAAT+AGG | 0.457871 | 4.2:-25097378 | None:intergenic |
| GCTCTGCTGTCAAAGCGCTC+TGG | 0.464574 | 4.2:+25099456 | MS.gene26469:CDS |
| CCCACTTAGCACTCCACATC+GGG | 0.476987 | 4.2:+25096329 | MS.gene26469:CDS |
| GATTGATGATGAATGGAATC+TGG | 0.495080 | 4.2:+25096856 | MS.gene26469:CDS |
| TTTCCATCTTTGTCTACCAC+AGG | 0.509662 | 4.2:-25099304 | None:intergenic |
| GCTAGGTTGGACTTATTACA+AGG | 0.520048 | 4.2:+25099415 | MS.gene26469:intron |
| AAGACCAATGGAAAAGTTGT+CGG | 0.522650 | 4.2:+25097927 | MS.gene26469:CDS |
| TTCCGGTGATTGATGATGAA+TGG | 0.523754 | 4.2:+25096849 | MS.gene26469:CDS |
| CTAGTCTGGAGGATGCTGCC+AGG | 0.524024 | 4.2:+25097991 | MS.gene26469:CDS |
| CGGAAGAAGGAAGCAAAGAA+TGG | 0.532448 | 4.2:-25096368 | None:intergenic |
| TCATGAACAACAAGTGGACT+TGG | 0.539611 | 4.2:-25097963 | None:intergenic |
| ACCCAGCGGATTGCGCAAAA+CGG | 0.541545 | 4.2:-25096407 | None:intergenic |
| CTACCTGTGGTAGACAAAGA+TGG | 0.544332 | 4.2:+25099301 | MS.gene26469:CDS |
| ACCACTACTTCCGTTGATGA+AGG | 0.545070 | 4.2:+25096635 | MS.gene26469:CDS |
| CTTGTCAAGAACAGAATAAG+TGG | 0.555394 | 4.2:+25096824 | MS.gene26469:CDS |
| ACCTTCATCAACGGAAGTAG+TGG | 0.556574 | 4.2:-25096636 | None:intergenic |
| TTCCATTCATCATCAATCAC+CGG | 0.558122 | 4.2:-25096851 | None:intergenic |
| GGCAGCATCCTCCAGACTAG+TGG | 0.560030 | 4.2:-25097988 | None:intergenic |
| CCAAACCGTTAATTCGGTCC+CGG | 0.572288 | 4.2:+25096446 | MS.gene26469:CDS |
| GTGGATTCATGAACAACAAG+TGG | 0.591533 | 4.2:-25097969 | None:intergenic |
| GGAAGCAAAGAATGGCATTG+AGG | 0.595610 | 4.2:-25096360 | None:intergenic |
| TCCCACTTAGCACTCCACAT+CGG | 0.596058 | 4.2:+25096328 | MS.gene26469:CDS |
| TGCAAGCCTATTCCCTGATG+TGG | 0.601040 | 4.2:+25097372 | MS.gene26469:CDS |
| AAGCTGCTTAGTAAGACCAA+TGG | 0.603514 | 4.2:+25097915 | MS.gene26469:CDS |
| CCCGATGTGGAGTGCTAAGT+GGG | 0.620179 | 4.2:-25096329 | None:intergenic |
| GGTAGACAAAGATGGAAAGC+TGG | 0.620312 | 4.2:+25099309 | MS.gene26469:CDS |
| TGAGGTAAAATGACCCGATG+TGG | 0.624256 | 4.2:-25096342 | None:intergenic |
| TCCAAGTACTGTCCACATCA+GGG | 0.628366 | 4.2:-25097384 | None:intergenic |
| AAAATATCGTCGACTACCTG+TGG | 0.634887 | 4.2:+25099288 | MS.gene26469:CDS |
| ACCCGATGTGGAGTGCTAAG+TGG | 0.637526 | 4.2:-25096330 | None:intergenic |
| CTAGGTTGGACTTATTACAA+GGG | 0.642792 | 4.2:+25099416 | MS.gene26469:intron |
| TAGGTTGGACTTATTACAAG+GGG | 0.646121 | 4.2:+25099417 | MS.gene26469:intron |
| GTGGAACCTACCTTCATCAA+CGG | 0.652102 | 4.2:-25096645 | None:intergenic |
| TCATGAATCCACTAGTCTGG+AGG | 0.669039 | 4.2:+25097980 | MS.gene26469:CDS |
| AGGTTGGACTTATTACAAGG+GGG | 0.752318 | 4.2:+25099418 | MS.gene26469:intron |
| TGAAACAACAGTGAACCCAG+CGG | 0.788173 | 4.2:-25096421 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTCTTTCTTATATAT+TGG | + | chr4.2:25099073-25099092 | MS.gene26469:intron | 10.0% |
| !! | GAAAAAAATAATAATAAACA+CGG | - | chr4.2:25096514-25096533 | None:intergenic | 10.0% |
| !! | TAATTTCTTTCTTATATATT+GGG | + | chr4.2:25099074-25099093 | MS.gene26469:intron | 10.0% |
| !!! | TAATAATAATTACTTTTAGA+TGG | + | chr4.2:25098567-25098586 | MS.gene26469:intron | 10.0% |
| !! | AACATTCAAAATAAAATGTA+TGG | - | chr4.2:25097650-25097669 | None:intergenic | 15.0% |
| !! | ACCTAAATACTAAAATTAAA+TGG | - | chr4.2:25098699-25098718 | None:intergenic | 15.0% |
| !! | CAAAATTCGTTATATTTATA+AGG | - | chr4.2:25098135-25098154 | None:intergenic | 15.0% |
| !!! | ACATTCAGTTTAATTTTTTA+GGG | - | chr4.2:25098166-25098185 | None:intergenic | 15.0% |
| !!! | ACCATTTAATTTTAGTATTT+AGG | + | chr4.2:25098695-25098714 | MS.gene26469:intron | 15.0% |
| !!! | GAAATTTTAGAGAAAAAATT+GGG | + | chr4.2:25098733-25098752 | MS.gene26469:intron | 15.0% |
| !!! | TCTTTTTTTACGAATAATTA+GGG | + | chr4.2:25098047-25098066 | MS.gene26469:intron | 15.0% |
| !!! | TGAAATTTTAGAGAAAAAAT+TGG | + | chr4.2:25098732-25098751 | MS.gene26469:intron | 15.0% |
| !!! | TTCTTTTTTTACGAATAATT+AGG | + | chr4.2:25098046-25098065 | MS.gene26469:intron | 15.0% |
| !! | AAAAAAAAGCTATAAGTTCA+AGG | - | chr4.2:25098226-25098245 | None:intergenic | 20.0% |
| !! | AAAAAAGAAACAATTATGAG+TGG | - | chr4.2:25096667-25096686 | None:intergenic | 20.0% |
| !! | ATTCGTAAAAAAAGAAATAG+TGG | - | chr4.2:25098042-25098061 | None:intergenic | 20.0% |
| !! | GTTGTCATATAAACAATAAT+TGG | + | chr4.2:25097444-25097463 | MS.gene26469:intron | 20.0% |
| !! | TGATTAATTTAGTTATGTTG+TGG | + | chr4.2:25096883-25096902 | MS.gene26469:intron | 20.0% |
| !! | TTAAAAAAGATTCAATTCCA+TGG | - | chr4.2:25099160-25099179 | None:intergenic | 20.0% |
| !!! | GACATTCAGTTTAATTTTTT+AGG | - | chr4.2:25098167-25098186 | None:intergenic | 20.0% |
| !!! | TACTTTAAAAACCAAAAGAA+TGG | - | chr4.2:25097110-25097129 | None:intergenic | 20.0% |
| !!! | TTCGTTTTGTTTCTTTTTTT+GGG | + | chr4.2:25096970-25096989 | MS.gene26469:intron | 20.0% |
| !!! | TTGAACTTATAGCTTTTTTT+TGG | + | chr4.2:25098225-25098244 | MS.gene26469:intron | 20.0% |
| !!! | TTTCGTTTTGTTTCTTTTTT+TGG | + | chr4.2:25096969-25096988 | MS.gene26469:intron | 20.0% |
| !!! | TTTTGTTTTTGTTATAGCTT+TGG | + | chr4.2:25096796-25096815 | MS.gene26469:intron | 20.0% |
| ! | AAGAAGGCTTAAATATGATT+AGG | - | chr4.2:25096735-25096754 | None:intergenic | 25.0% |
| ! | ACAAAGGTGAAAAACTTTAA+AGG | + | chr4.2:25098091-25098110 | MS.gene26469:intron | 25.0% |
| ! | ATATGTATGTGAAATGTGAT+AGG | - | chr4.2:25099003-25099022 | None:intergenic | 25.0% |
| ! | ATCATGATTTGACAGAAAAT+TGG | - | chr4.2:25097502-25097521 | None:intergenic | 25.0% |
| ! | CAAAGGTGAAAAACTTTAAA+GGG | + | chr4.2:25098092-25098111 | MS.gene26469:intron | 25.0% |
| ! | CAACCATGTAAAATTAACAT+TGG | - | chr4.2:25096771-25096790 | None:intergenic | 25.0% |
| ! | CATAAAATCAGAAACTGTAT+AGG | - | chr4.2:25096585-25096604 | None:intergenic | 25.0% |
| ! | CATTTCACATACATATTGAA+TGG | + | chr4.2:25099007-25099026 | MS.gene26469:intron | 25.0% |
| ! | TCATGGGTGAAAATTTAAAT+AGG | - | chr4.2:25097733-25097752 | None:intergenic | 25.0% |
| ! | TGAAAAGGAAAAATTAGACA+TGG | + | chr4.2:25098306-25098325 | MS.gene26469:intron | 25.0% |
| ! | TTAGCAATTGATACAATATC+AGG | + | chr4.2:25097028-25097047 | MS.gene26469:CDS | 25.0% |
| !! | GATCCAATGTTAATTTTACA+TGG | + | chr4.2:25096765-25096784 | MS.gene26469:intron | 25.0% |
| !! | TGATTTTTCACATTTTTGCT+AGG | + | chr4.2:25099398-25099417 | MS.gene26469:intron | 25.0% |
| !! | TTAAATTTTCACCCATGATA+TGG | + | chr4.2:25097735-25097754 | MS.gene26469:intron | 25.0% |
| !! | TTTTCTCAAATCCATATCAT+GGG | - | chr4.2:25097749-25097768 | None:intergenic | 25.0% |
| !! | TTTTTCTCAAATCCATATCA+TGG | - | chr4.2:25097750-25097769 | None:intergenic | 25.0% |
| !!! | GATTTTGTTTTAATCTAGCT+TGG | + | chr4.2:25097564-25097583 | MS.gene26469:intron | 25.0% |
| !!! | GTTCTAATTATTGTTTTGCA+TGG | + | chr4.2:25097871-25097890 | MS.gene26469:intron | 25.0% |
| ACAACCAAGATTGTCATTAT+AGG | - | chr4.2:25099208-25099227 | None:intergenic | 30.0% | |
| ACACTATTACTTCTTGTACT+AGG | + | chr4.2:25099251-25099270 | MS.gene26469:intron | 30.0% | |
| ATCAGTAACATAATAGTGAG+AGG | - | chr4.2:25099040-25099059 | None:intergenic | 30.0% | |
| ATTACAATTTCCCTTCTGTT+TGG | - | chr4.2:25097803-25097822 | None:intergenic | 30.0% | |
| CATCTTAAATTGATGCTAAC+TGG | + | chr4.2:25097527-25097546 | MS.gene26469:intron | 30.0% | |
| GCAAACAGACATAAACATAT+CGG | - | chr4.2:25097230-25097249 | None:intergenic | 30.0% | |
| GTATTGGGCTTAAAAACATA+TGG | + | chr4.2:25098449-25098468 | MS.gene26469:intron | 30.0% | |
| TAATCTATCGCTTACAAACT+GGG | + | chr4.2:25098417-25098436 | MS.gene26469:intron | 30.0% | |
| TCATCTCTTATCTAAGTTCA+AGG | + | chr4.2:25098645-25098664 | MS.gene26469:intron | 30.0% | |
| TGATACAATATCAGGTACAT+AGG | + | chr4.2:25097036-25097055 | MS.gene26469:intron | 30.0% | |
| TGGATCACATAATAACAAGA+AGG | - | chr4.2:25096751-25096770 | None:intergenic | 30.0% | |
| TTAATCTATCGCTTACAAAC+TGG | + | chr4.2:25098416-25098435 | MS.gene26469:intron | 30.0% | |
| TTACAATTTCCCTTCTGTTT+GGG | - | chr4.2:25097802-25097821 | None:intergenic | 30.0% | |
| TTGTTTATATGACAACAGCA+AGG | - | chr4.2:25097440-25097459 | None:intergenic | 30.0% | |
| ! | AGAAACAGTAGTTTCTGTTT+TGG | + | chr4.2:25097263-25097282 | MS.gene26469:intron | 30.0% |
| ! | CGAAATTTCAACCATTCTTT+TGG | + | chr4.2:25097096-25097115 | MS.gene26469:intron | 30.0% |
| ! | GAAACAGTAGTTTCTGTTTT+GGG | + | chr4.2:25097264-25097283 | MS.gene26469:intron | 30.0% |
| ! | TTGTCTACTGTACTTTAAAG+TGG | + | chr4.2:25097073-25097092 | MS.gene26469:intron | 30.0% |
| ! | TTTTCACATTTTTGCTAGGT+TGG | + | chr4.2:25099402-25099421 | MS.gene26469:intron | 30.0% |
| !!! | TGTTTTTGTTATAGCTTTGG+AGG | + | chr4.2:25096799-25096818 | MS.gene26469:intron | 30.0% |
| !!! | TTTCTTTTTTTGGGTGATGT+AGG | + | chr4.2:25096979-25096998 | MS.gene26469:intron | 30.0% |
| AACCATTCTCAATGCTTTCA+AGG | - | chr4.2:25097150-25097169 | None:intergenic | 35.0% | |
| AAGACCAATGGAAAAGTTGT+CGG | + | chr4.2:25097927-25097946 | MS.gene26469:CDS | 35.0% | |
| ACATGGAGAGACAAATAGAA+TGG | + | chr4.2:25098323-25098342 | MS.gene26469:intron | 35.0% | |
| ACCTTTGTTCATTAACCAAG+GGG | - | chr4.2:25098079-25098098 | None:intergenic | 35.0% | |
| AGAAAGAGAATGAGAAACAG+CGG | + | chr4.2:25098363-25098382 | MS.gene26469:intron | 35.0% | |
| AGAGAAAGAGTGAGATGAAA+AGG | + | chr4.2:25098291-25098310 | MS.gene26469:intron | 35.0% | |
| ATCTGATTTACACGTATCCA+TGG | + | chr4.2:25099140-25099159 | MS.gene26469:intron | 35.0% | |
| ATGGATACGTGTAAATCAGA+TGG | - | chr4.2:25099141-25099160 | None:intergenic | 35.0% | |
| CACCTTTGTTCATTAACCAA+GGG | - | chr4.2:25098080-25098099 | None:intergenic | 35.0% | |
| CAGTACTTGGAAAGTAAGTA+TGG | + | chr4.2:25097396-25097415 | MS.gene26469:intron | 35.0% | |
| CAGTATGTAAAATCAGTACC+TGG | - | chr4.2:25098012-25098031 | None:intergenic | 35.0% | |
| CCAAGATTGTCATTATAGGA+TGG | - | chr4.2:25099204-25099223 | None:intergenic | 35.0% | |
| CCATCCTATAATGACAATCT+TGG | + | chr4.2:25099201-25099220 | MS.gene26469:intron | 35.0% | |
| CGAAGAAAAAGAACACTTAC+CGG | - | chr4.2:25096468-25096487 | None:intergenic | 35.0% | |
| CTTGTCAAGAACAGAATAAG+TGG | + | chr4.2:25096824-25096843 | MS.gene26469:CDS | 35.0% | |
| GAAGAAAAAGAACACTTACC+GGG | - | chr4.2:25096467-25096486 | None:intergenic | 35.0% | |
| GCTACTATCATTCTGTTAAC+TGG | + | chr4.2:25097835-25097854 | MS.gene26469:intron | 35.0% | |
| GTACAAGAAGTAATAGTGTC+AGG | - | chr4.2:25099250-25099269 | None:intergenic | 35.0% | |
| TAAAAGCGACAGCAAACAAT+CGG | - | chr4.2:25097341-25097360 | None:intergenic | 35.0% | |
| TACAAGGGGGAATATTGTTA+AGG | + | chr4.2:25099431-25099450 | MS.gene26469:CDS | 35.0% | |
| TCACCTTTGTTCATTAACCA+AGG | - | chr4.2:25098081-25098100 | None:intergenic | 35.0% | |
| TGATTAGGCTATAATCTCAG+AGG | - | chr4.2:25096720-25096739 | None:intergenic | 35.0% | |
| TTCATCCCAAACCGTTAATT+CGG | + | chr4.2:25096440-25096459 | MS.gene26469:CDS | 35.0% | |
| TTCCATTCATCATCAATCAC+CGG | - | chr4.2:25096854-25096873 | None:intergenic | 35.0% | |
| TTGGGAAAATGTGACTATCA+AGG | - | chr4.2:25097784-25097803 | None:intergenic | 35.0% | |
| TTTAAGCCCAATACAATACC+CGG | - | chr4.2:25098443-25098462 | None:intergenic | 35.0% | |
| ! | CGGTAAGTGTTCTTTTTCTT+CGG | + | chr4.2:25096466-25096485 | MS.gene26469:intron | 35.0% |
| ! | CTAGGTTGGACTTATTACAA+GGG | + | chr4.2:25099416-25099435 | MS.gene26469:intron | 35.0% |
| ! | TAGCTTTTGAATCACGTAGA+CGG | + | chr4.2:25098249-25098268 | MS.gene26469:intron | 35.0% |
| ! | TAGGTTGGACTTATTACAAG+GGG | + | chr4.2:25099417-25099436 | MS.gene26469:intron | 35.0% |
| ! | TCACATTTTCCCAAACAGAA+GGG | + | chr4.2:25097790-25097809 | MS.gene26469:intron | 35.0% |
| ! | TGAATGAAGAGTGTGTGTAT+TGG | - | chr4.2:25098532-25098551 | None:intergenic | 35.0% |
| ! | TGTTGTGTTGTATGTTTCTG+AGG | - | chr4.2:25098475-25098494 | None:intergenic | 35.0% |
| !! | AACCCCAAGGTTCTAAATAA+CGG | - | chr4.2:25098979-25098998 | None:intergenic | 35.0% |
| !! | GATTGATGATGAATGGAATC+TGG | + | chr4.2:25096856-25096875 | MS.gene26469:CDS | 35.0% |
| !! | TTCCTTGAAAGCATTGAGAA+TGG | + | chr4.2:25097145-25097164 | MS.gene26469:intron | 35.0% |
| !!! | ACGCTCACAAGTTTTGATTT+GGG | + | chr4.2:25097618-25097637 | MS.gene26469:intron | 35.0% |
| !!! | ATTTTATTTTAGCGCGCGAA+TGG | + | chr4.2:25096557-25096576 | MS.gene26469:intron | 35.0% |
| !!! | TTTTTTTGGGTGATGTAGGT+TGG | + | chr4.2:25096983-25097002 | MS.gene26469:intron | 35.0% |
| AAATGTGATAGGTAACCCCA+AGG | - | chr4.2:25098992-25099011 | None:intergenic | 40.0% | |
| AAGCTGCTTAGTAAGACCAA+TGG | + | chr4.2:25097915-25097934 | MS.gene26469:CDS | 40.0% | |
| AAGGGGGAATATTGTTAAGG+CGG | + | chr4.2:25099434-25099453 | MS.gene26469:CDS | 40.0% | |
| AAGTAATAGTGTCAGGCATC+AGG | - | chr4.2:25099243-25099262 | None:intergenic | 40.0% | |
| AGACGCTGCGATACAAATAA+CGG | - | chr4.2:25098911-25098930 | None:intergenic | 40.0% | |
| AGGTTGGACTTATTACAAGG+GGG | + | chr4.2:25099418-25099437 | MS.gene26469:intron | 40.0% | |
| AGTGTATGAGGAAGGGAATA+AGG | + | chr4.2:25098387-25098406 | MS.gene26469:intron | 40.0% | |
| ATGAGGAAGGGAATAAGGTT+AGG | + | chr4.2:25098392-25098411 | MS.gene26469:intron | 40.0% | |
| GAACAGAATAAGTGGTCTTC+CGG | + | chr4.2:25096832-25096851 | MS.gene26469:CDS | 40.0% | |
| GATACAAATAACGGTCTTCG+CGG | - | chr4.2:25098902-25098921 | None:intergenic | 40.0% | |
| GTGGATTCATGAACAACAAG+TGG | - | chr4.2:25097972-25097991 | None:intergenic | 40.0% | |
| TAATTAGGGAAGAATCCCCT+TGG | + | chr4.2:25098061-25098080 | MS.gene26469:intron | 40.0% | |
| TCCCCTTGGTTAATGAACAA+AGG | + | chr4.2:25098075-25098094 | MS.gene26469:intron | 40.0% | |
| TGAGGAAGGGAATAAGGTTA+GGG | + | chr4.2:25098393-25098412 | MS.gene26469:intron | 40.0% | |
| TGTTCATGAATCCACTAGTC+TGG | + | chr4.2:25097977-25097996 | MS.gene26469:CDS | 40.0% | |
| TTTCCATCTTTGTCTACCAC+AGG | - | chr4.2:25099307-25099326 | None:intergenic | 40.0% | |
| ! | AAAATATCGTCGACTACCTG+TGG | + | chr4.2:25099288-25099307 | MS.gene26469:CDS | 40.0% |
| ! | CGACCGTTATTTAGAACCTT+GGG | + | chr4.2:25098973-25098992 | MS.gene26469:intron | 40.0% |
| ! | CTCAATCCACTCATTTTGTC+AGG | + | chr4.2:25097696-25097715 | MS.gene26469:intron | 40.0% |
| ! | GACCGTTATTTAGAACCTTG+GGG | + | chr4.2:25098974-25098993 | MS.gene26469:intron | 40.0% |
| ! | GCTAGGTTGGACTTATTACA+AGG | + | chr4.2:25099415-25099434 | MS.gene26469:intron | 40.0% |
| ! | GTCACATTTTCCCAAACAGA+AGG | + | chr4.2:25097789-25097808 | MS.gene26469:intron | 40.0% |
| ! | TCATGAACAACAAGTGGACT+TGG | - | chr4.2:25097966-25097985 | None:intergenic | 40.0% |
| !! | AAGGTTCTAAATAACGGTCG+CGG | - | chr4.2:25098973-25098992 | None:intergenic | 40.0% |
| !! | CTGACAAAATGAGTGGATTG+AGG | - | chr4.2:25097698-25097717 | None:intergenic | 40.0% |
| !! | TTCCGGTGATTGATGATGAA+TGG | + | chr4.2:25096849-25096868 | MS.gene26469:CDS | 40.0% |
| !! | TTGATGCTAACTGGTTCTGT+AGG | + | chr4.2:25097536-25097555 | MS.gene26469:intron | 40.0% |
| !!! | AAAACGGTGTCGTTTTGGTA+GGG | - | chr4.2:25096394-25096413 | None:intergenic | 40.0% |
| !!! | GACGCTCACAAGTTTTGATT+TGG | + | chr4.2:25097617-25097636 | MS.gene26469:intron | 40.0% |
| !!! | GATTGTTTGCTGTCGCTTTT+AGG | + | chr4.2:25097340-25097359 | MS.gene26469:intron | 40.0% |
| AATCACGTAGACGGTGAAGT+TGG | + | chr4.2:25098258-25098277 | MS.gene26469:intron | 45.0% | |
| ACCTTCATCAACGGAAGTAG+TGG | - | chr4.2:25096639-25096658 | None:intergenic | 45.0% | |
| ACTTACCGGGACCGAATTAA+CGG | - | chr4.2:25096454-25096473 | None:intergenic | 45.0% | |
| CGGAAGAAGGAAGCAAAGAA+TGG | - | chr4.2:25096371-25096390 | None:intergenic | 45.0% | |
| CGTTAAGGTTGTCGCGATTT+CGG | - | chr4.2:25098941-25098960 | None:intergenic | 45.0% | |
| CTACCTGTGGTAGACAAAGA+TGG | + | chr4.2:25099301-25099320 | MS.gene26469:CDS | 45.0% | |
| GGAAGCAAAGAATGGCATTG+AGG | - | chr4.2:25096363-25096382 | None:intergenic | 45.0% | |
| GGCTGTAACAGAGTCAGTAA+CGG | - | chr4.2:25098205-25098224 | None:intergenic | 45.0% | |
| GGTAGACAAAGATGGAAAGC+TGG | + | chr4.2:25099309-25099328 | MS.gene26469:CDS | 45.0% | |
| GTGGAACCTACCTTCATCAA+CGG | - | chr4.2:25096648-25096667 | None:intergenic | 45.0% | |
| TACTGTCCACATCAGGGAAT+AGG | - | chr4.2:25097381-25097400 | None:intergenic | 45.0% | |
| TGAAACAACAGTGAACCCAG+CGG | - | chr4.2:25096424-25096443 | None:intergenic | 45.0% | |
| TGAGGTAAAATGACCCGATG+TGG | - | chr4.2:25096345-25096364 | None:intergenic | 45.0% | |
| ! | ACCACTACTTCCGTTGATGA+AGG | + | chr4.2:25096635-25096654 | MS.gene26469:CDS | 45.0% |
| ! | CTACTTCCGTTGATGAAGGT+AGG | + | chr4.2:25096639-25096658 | MS.gene26469:intron | 45.0% |
| ! | GCGACCGTTATTTAGAACCT+TGG | + | chr4.2:25098972-25098991 | MS.gene26469:intron | 45.0% |
| ! | GTAGACGGTGAAGTTGGTTA+TGG | + | chr4.2:25098264-25098283 | MS.gene26469:intron | 45.0% |
| ! | GTCACCGACAACTTTTCCAT+TGG | - | chr4.2:25097934-25097953 | None:intergenic | 45.0% |
| ! | TCATGAATCCACTAGTCTGG+AGG | + | chr4.2:25097980-25097999 | MS.gene26469:CDS | 45.0% |
| ! | TCCAAGTACTGTCCACATCA+GGG | - | chr4.2:25097387-25097406 | None:intergenic | 45.0% |
| ! | TTCCAAGTACTGTCCACATC+AGG | - | chr4.2:25097388-25097407 | None:intergenic | 45.0% |
| !!! | CAAAACGGTGTCGTTTTGGT+AGG | - | chr4.2:25096395-25096414 | None:intergenic | 45.0% |
| !! | TATTTATTATGTTATAATTA+TGG | + | chr4.2:25098789-25098808 | MS.gene26469:intron | 5.0% |
| AGAAACAGCGGCAGTGTATG+AGG | + | chr4.2:25098375-25098394 | MS.gene26469:intron | 50.0% | |
| CAGAGTCAGTAACGGCGTTA+AGG | - | chr4.2:25098197-25098216 | None:intergenic | 50.0% | |
| CCAAACCGTTAATTCGGTCC+CGG | + | chr4.2:25096446-25096465 | MS.gene26469:CDS | 50.0% | |
| CGGGACCGAATTAACGGTTT+GGG | - | chr4.2:25096448-25096467 | None:intergenic | 50.0% | |
| CTATCGCTTACAAACTGGGC+CGG | + | chr4.2:25098421-25098440 | MS.gene26469:intron | 50.0% | |
| GCAGCACCTGACAAAATGAG+TGG | - | chr4.2:25097705-25097724 | None:intergenic | 50.0% | |
| TATCGCTTACAAACTGGGCC+GGG | + | chr4.2:25098422-25098441 | MS.gene26469:intron | 50.0% | |
| TCCCACTTAGCACTCCACAT+CGG | + | chr4.2:25096328-25096347 | MS.gene26469:CDS | 50.0% | |
| TCCCTGATGTGGACAGTACT+TGG | + | chr4.2:25097383-25097402 | MS.gene26469:CDS | 50.0% | |
| TGCAAGCCTATTCCCTGATG+TGG | + | chr4.2:25097372-25097391 | MS.gene26469:CDS | 50.0% | |
| ! | AACTGGGCCGGGTATTGTAT+TGG | + | chr4.2:25098433-25098452 | MS.gene26469:intron | 50.0% |
| ! | ACTGGGCCGGGTATTGTATT+GGG | + | chr4.2:25098434-25098453 | MS.gene26469:intron | 50.0% |
| !!! | TGCGCAAAACGGTGTCGTTT+TGG | - | chr4.2:25096399-25096418 | None:intergenic | 50.0% |
| ACAGCGGCAGTGTATGAGGA+AGG | + | chr4.2:25098379-25098398 | MS.gene26469:intron | 55.0% | |
| CAGCGGCAGTGTATGAGGAA+GGG | + | chr4.2:25098380-25098399 | MS.gene26469:intron | 55.0% | |
| CCCACTTAGCACTCCACATC+GGG | + | chr4.2:25096329-25096348 | MS.gene26469:CDS | 55.0% | |
| CCGGGACCGAATTAACGGTT+TGG | - | chr4.2:25096449-25096468 | None:intergenic | 55.0% | |
| ! | ACCCGATGTGGAGTGCTAAG+TGG | - | chr4.2:25096333-25096352 | None:intergenic | 55.0% |
| ! | ACCGTTTTGCGCAATCCGCT+GGG | + | chr4.2:25096406-25096425 | MS.gene26469:CDS | 55.0% |
| ! | CCCGATGTGGAGTGCTAAGT+GGG | - | chr4.2:25096332-25096351 | None:intergenic | 55.0% |
| !! | ACCCAGCGGATTGCGCAAAA+CGG | - | chr4.2:25096410-25096429 | None:intergenic | 55.0% |
| !! | CGTTTTGGTAGGGCGGAAGA+AGG | - | chr4.2:25096384-25096403 | None:intergenic | 55.0% |
| !!! | ACGGTGTCGTTTTGGTAGGG+CGG | - | chr4.2:25096391-25096410 | None:intergenic | 55.0% |
| CTAGTCTGGAGGATGCTGCC+AGG | + | chr4.2:25097991-25098010 | MS.gene26469:CDS | 60.0% | |
| GGCAGCATCCTCCAGACTAG+TGG | - | chr4.2:25097991-25098010 | None:intergenic | 60.0% | |
| ! | CACCGTTTTGCGCAATCCGC+TGG | + | chr4.2:25096405-25096424 | MS.gene26469:CDS | 60.0% |
| ! | GCTCTGCTGTCAAAGCGCTC+TGG | + | chr4.2:25099456-25099475 | MS.gene26469:CDS | 60.0% |
| TCGCGGTCGCGATCGCGTTA+AGG | - | chr4.2:25098956-25098975 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 25096300 | 25099494 | 25096300 | ID=MS.gene26469 |
| chr4.2 | mRNA | 25096300 | 25099494 | 25096300 | ID=MS.gene26469.t1;Parent=MS.gene26469 |
| chr4.2 | exon | 25096300 | 25096467 | 25096300 | ID=MS.gene26469.t1.exon1;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25096300 | 25096467 | 25096300 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| chr4.2 | exon | 25096569 | 25096656 | 25096569 | ID=MS.gene26469.t1.exon2;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25096569 | 25096656 | 25096569 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| chr4.2 | exon | 25096813 | 25096877 | 25096813 | ID=MS.gene26469.t1.exon3;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25096813 | 25096877 | 25096813 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| chr4.2 | exon | 25097001 | 25097049 | 25097001 | ID=MS.gene26469.t1.exon4;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25097001 | 25097049 | 25097001 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| chr4.2 | exon | 25097362 | 25097408 | 25097362 | ID=MS.gene26469.t1.exon5;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25097362 | 25097408 | 25097362 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| chr4.2 | exon | 25097897 | 25098012 | 25097897 | ID=MS.gene26469.t1.exon6;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25097897 | 25098012 | 25097897 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| chr4.2 | exon | 25099273 | 25099330 | 25099273 | ID=MS.gene26469.t1.exon7;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25099273 | 25099330 | 25099273 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| chr4.2 | exon | 25099420 | 25099494 | 25099420 | ID=MS.gene26469.t1.exon8;Parent=MS.gene26469.t1 |
| chr4.2 | CDS | 25099420 | 25099494 | 25099420 | ID=cds.MS.gene26469.t1;Parent=MS.gene26469.t1 |
| Gene Sequence |
| Protein sequence |
