Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26562.t1 | XP_003608058.1 | 95.3 | 274 | 11 | 2 | 44 | 317 | 48 | 319 | 1.30E-146 | 529.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26562.t1 | Q922M5 | 44.1 | 102 | 55 | 1 | 170 | 269 | 330 | 431 | 5.4e-21 | 103.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26562.t1 | G7JNK7 | 95.3 | 274 | 11 | 2 | 44 | 317 | 48 | 319 | 9.1e-147 | 529.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene26562 | 0.820362 | 7.14E-53 | -1.69E-46 |
| MS.gene051263 | MS.gene26562 | 0.804072 | 2.58E-49 | -1.69E-46 |
| MS.gene051629 | MS.gene26562 | 0.820382 | 7.07E-53 | -1.69E-46 |
| MS.gene059300 | MS.gene26562 | 0.803443 | 3.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26562.t1 | MTR_4g087240 | 92.384 | 302 | 20 | 3 | 17 | 317 | 20 | 319 | 0.0 | 556 |
| MS.gene26562.t1 | MTR_5g018400 | 50.206 | 243 | 109 | 3 | 43 | 280 | 29 | 264 | 1.70e-77 | 242 |
| MS.gene26562.t1 | MTR_5g018470 | 50.211 | 237 | 105 | 2 | 43 | 273 | 30 | 259 | 3.80e-69 | 221 |
| MS.gene26562.t1 | MTR_0024s0330 | 36.066 | 122 | 67 | 3 | 169 | 284 | 34 | 150 | 3.60e-16 | 79.7 |
| MS.gene26562.t1 | MTR_6g017265 | 35.780 | 109 | 61 | 2 | 169 | 271 | 43 | 148 | 7.50e-15 | 75.5 |
| MS.gene26562.t1 | MTR_6g070950 | 28.195 | 266 | 136 | 10 | 41 | 251 | 7 | 272 | 5.21e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26562.t1 | AT2G23530 | 50.000 | 244 | 96 | 5 | 43 | 274 | 29 | 258 | 1.39e-71 | 231 |
| MS.gene26562.t1 | AT4G37110 | 45.385 | 260 | 115 | 5 | 43 | 280 | 29 | 283 | 1.63e-68 | 219 |
| MS.gene26562.t1 | AT4G37110 | 47.773 | 247 | 115 | 5 | 43 | 280 | 29 | 270 | 9.18e-68 | 217 |
| MS.gene26562.t1 | AT4G37110 | 51.099 | 182 | 83 | 3 | 100 | 280 | 12 | 188 | 1.30e-60 | 196 |
| MS.gene26562.t1 | AT4G37110 | 51.099 | 182 | 83 | 3 | 100 | 280 | 12 | 188 | 1.30e-60 | 196 |
| MS.gene26562.t1 | AT1G67780 | 34.307 | 137 | 71 | 3 | 169 | 299 | 23 | 146 | 1.03e-16 | 80.9 |
| MS.gene26562.t1 | AT1G67780 | 34.307 | 137 | 71 | 3 | 169 | 299 | 23 | 146 | 1.03e-16 | 80.9 |
| MS.gene26562.t1 | AT5G38690 | 37.624 | 101 | 60 | 1 | 172 | 269 | 23 | 123 | 4.07e-14 | 73.2 |
| MS.gene26562.t1 | AT5G38690 | 37.624 | 101 | 60 | 1 | 172 | 269 | 23 | 123 | 4.07e-14 | 73.2 |
| MS.gene26562.t1 | AT1G67270 | 36.538 | 104 | 63 | 1 | 169 | 269 | 15 | 118 | 1.08e-13 | 72.0 |
Find 77 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTTGTTAAAGCTTTC+TGG | 0.081932 | 4.1:-22895483 | MS.gene26562:CDS |
| GACGAAGGTGTTGTCGTTTC+AGG | 0.147931 | 4.1:-22895573 | MS.gene26562:CDS |
| CTGAAAGACGTTCTTCTTCT+AGG | 0.197268 | 4.1:-22895392 | MS.gene26562:intron |
| CTTTCTTGACGCTCTGCTTT+AGG | 0.267050 | 4.1:+22894479 | None:intergenic |
| ACTTCAGGGTTTGTGCCTTC+TGG | 0.274892 | 4.1:+22894416 | None:intergenic |
| TGCTCTTCAGTGTAAACTTC+AGG | 0.282121 | 4.1:+22894401 | None:intergenic |
| AGAGATCTCTGGTATTTCTT+TGG | 0.321827 | 4.1:+22892872 | None:intergenic |
| TGTTTGTAAGGTGACGAAAT+TGG | 0.331250 | 4.1:-22892979 | MS.gene26562:intron |
| TGACATTTCTCTCCCTTGAT+TGG | 0.343032 | 4.1:+22894296 | None:intergenic |
| ATCTCCACAAAGCCGTCCTT+GGG | 0.359404 | 4.1:+22893542 | None:intergenic |
| TACTGGTAATATATACAATA+AGG | 0.364939 | 4.1:-22893203 | MS.gene26562:intron |
| CCTTGATTGGATCATATATA+TGG | 0.370088 | 4.1:+22894309 | None:intergenic |
| GATTGGGAATTGTATGTAGA+TGG | 0.394321 | 4.1:-22894350 | MS.gene26562:CDS |
| GAATGGGAACTCGTCGTAGA+AGG | 0.402667 | 4.1:-22895671 | MS.gene26562:CDS |
| TAGGAGATTGTGAGACTGAT+TGG | 0.407394 | 4.1:-22894367 | MS.gene26562:CDS |
| GTCCTAGTCAGTGTTGAATC+TGG | 0.411891 | 4.1:+22892849 | None:intergenic |
| CGCTTGTCACAATAGTTAAC+TGG | 0.416480 | 4.1:+22894503 | None:intergenic |
| GATTAAGACCCGTCGCTTTG+AGG | 0.416818 | 4.1:-22892931 | MS.gene26562:CDS |
| TTGACGGAGGGGCGCGGTGT+TGG | 0.424322 | 4.1:+22895444 | None:intergenic |
| AATCTCCACAAAGCCGTCCT+TGG | 0.429942 | 4.1:+22893541 | None:intergenic |
| CATCGCATTACGAACAGATT+CGG | 0.430803 | 4.1:-22895545 | MS.gene26562:CDS |
| AGAGCCCTTCTCGTCCGAAT+TGG | 0.433546 | 4.1:+22892816 | None:intergenic |
| GCTCTTCAGTGTAAACTTCA+GGG | 0.440452 | 4.1:+22894402 | None:intergenic |
| TAATTCACATTTGTTGCAAT+CGG | 0.441018 | 4.1:+22893566 | None:intergenic |
| ATCGCATTACGAACAGATTC+GGG | 0.446329 | 4.1:-22895544 | MS.gene26562:CDS |
| AGTCCACTTGGGATTGATGC+TGG | 0.452136 | 4.1:+22893288 | None:intergenic |
| CGCCACCACCGAAACCAAAA+CGG | 0.463153 | 4.1:-22895610 | MS.gene26562:CDS |
| AGAACGTCTTTCAGATTCGT+TGG | 0.472148 | 4.1:+22895401 | None:intergenic |
| AAAGTTCATCAAGTAAGAAA+AGG | 0.473277 | 4.1:-22894460 | MS.gene26562:CDS |
| GGACACTGAGTAGGCCAATT+CGG | 0.474533 | 4.1:-22892830 | MS.gene26562:CDS |
| GAAGAATCAGCTTCTGAAGA+TGG | 0.476470 | 4.1:-22895636 | MS.gene26562:CDS |
| TTACCCCAAGGACGGCTTTG+TGG | 0.478556 | 4.1:-22893546 | MS.gene26562:CDS |
| GAGGAAAGCATGGAAGGATC+AGG | 0.483021 | 4.1:-22892912 | MS.gene26562:CDS |
| CGTCTTTCAGATTCGTTGGA+TGG | 0.488192 | 4.1:+22895405 | None:intergenic |
| ACAAGAAGGGCAAGTCCACT+TGG | 0.490962 | 4.1:+22893276 | None:intergenic |
| GTTTGTAAGGTGACGAAATT+GGG | 0.490978 | 4.1:-22892978 | MS.gene26562:intron |
| CCATGCTTTCCTCAAAGCGA+CGG | 0.493198 | 4.1:+22892922 | None:intergenic |
| GTTGAATCTGGAGAGATCTC+TGG | 0.493207 | 4.1:+22892861 | None:intergenic |
| TTGCAAATTTCTCGACAAGA+AGG | 0.509937 | 4.1:+22893262 | None:intergenic |
| CGCTTTGAGGAAAGCATGGA+AGG | 0.516905 | 4.1:-22892918 | MS.gene26562:CDS |
| CATGCTTTCCTCAAAGCGAC+GGG | 0.519097 | 4.1:+22892923 | None:intergenic |
| AAGTAAGAAAAGGAAGGAAG+TGG | 0.520203 | 4.1:-22894450 | MS.gene26562:CDS |
| CCATATATATGATCCAATCA+AGG | 0.520783 | 4.1:-22894309 | MS.gene26562:CDS |
| TGCAAATTTCTCGACAAGAA+GGG | 0.527573 | 4.1:+22893263 | None:intergenic |
| ACCAAAACGGCGAAAACTGA+CGG | 0.544413 | 4.1:-22895597 | MS.gene26562:CDS |
| GCTGAGAGAATGCATAAGCT+TGG | 0.545658 | 4.1:-22895501 | MS.gene26562:CDS |
| TAGATGGATATGATGAGGAT+GGG | 0.547781 | 4.1:-22894334 | MS.gene26562:CDS |
| GTAGATGGATATGATGAGGA+TGG | 0.552923 | 4.1:-22894335 | MS.gene26562:CDS |
| GTAGGCCAATTCGGACGAGA+AGG | 0.559902 | 4.1:-22892821 | MS.gene26562:CDS |
| AGGAGATTGTGAGACTGATT+GGG | 0.560044 | 4.1:-22894366 | MS.gene26562:CDS |
| GAGAGAAATGTCATCAATGC+GGG | 0.565621 | 4.1:-22894286 | MS.gene26562:intron |
| CACAATAGTTAACTGGTGGT+AGG | 0.567871 | 4.1:+22894510 | None:intergenic |
| CTCCAGATTCAACACTGACT+AGG | 0.570452 | 4.1:-22892851 | MS.gene26562:CDS |
| CCGTCGCTTTGAGGAAAGCA+TGG | 0.570694 | 4.1:-22892922 | MS.gene26562:CDS |
| ACAATAGTTAACTGGTGGTA+GGG | 0.571951 | 4.1:+22894511 | None:intergenic |
| GAAGAGCATGAGAAGCTGCT+AGG | 0.582500 | 4.1:-22894386 | MS.gene26562:CDS |
| TTCATCAAGTAAGAAAAGGA+AGG | 0.585443 | 4.1:-22894456 | MS.gene26562:CDS |
| AATAATGTTACCTTGTGTAG+AGG | 0.592456 | 4.1:+22893517 | None:intergenic |
| TAGGCCAATTCGGACGAGAA+GGG | 0.596764 | 4.1:-22892820 | MS.gene26562:CDS |
| ACGAACAGATTCGGGAACAA+AGG | 0.601062 | 4.1:-22895536 | MS.gene26562:CDS |
| GTGGAGATTGCCTCTACACA+AGG | 0.601803 | 4.1:-22893527 | MS.gene26562:intron |
| GTGGAAATTCATATACCAGA+AGG | 0.609129 | 4.1:-22894431 | MS.gene26562:CDS |
| CATATATATGATCCAATCAA+GGG | 0.618648 | 4.1:-22894308 | MS.gene26562:CDS |
| CAAGAAGGGCAAGTCCACTT+GGG | 0.625978 | 4.1:+22893277 | None:intergenic |
| AGATTCGTTGGATGGTAACG+AGG | 0.637828 | 4.1:+22895413 | None:intergenic |
| GCAACTGCAATAGCTGCCGT+AGG | 0.655636 | 4.1:-22893243 | MS.gene26562:CDS |
| GCGAAAACTGACGGTGACGA+AGG | 0.663376 | 4.1:-22895588 | MS.gene26562:CDS |
| AGATGGATATGATGAGGATG+GGG | 0.664541 | 4.1:-22894333 | MS.gene26562:CDS |
| AATGTGAATTACCCCAAGGA+CGG | 0.664710 | 4.1:-22893554 | MS.gene26562:CDS |
| AAGCCAGCATCAATCCCAAG+TGG | 0.668388 | 4.1:-22893291 | MS.gene26562:CDS |
| GAATCAGCTTCTGAAGATGG+CGG | 0.676548 | 4.1:-22895633 | MS.gene26562:CDS |
| AACAAATGTGAATTACCCCA+AGG | 0.685873 | 4.1:-22893558 | MS.gene26562:CDS |
| TTGTCACAATAGTTAACTGG+TGG | 0.697560 | 4.1:+22894506 | None:intergenic |
| TCTCCACAAAGCCGTCCTTG+GGG | 0.703752 | 4.1:+22893543 | None:intergenic |
| GGAGAGAAATGTCATCAATG+CGG | 0.712891 | 4.1:-22894287 | MS.gene26562:CDS |
| CACTGACTAGGACACTGAGT+AGG | 0.718098 | 4.1:-22892839 | MS.gene26562:CDS |
| GTATGTAGATGGATATGATG+AGG | 0.739576 | 4.1:-22894339 | MS.gene26562:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAATTTTATGTATTAATT+AGG | - | chr4.1:22893294-22893313 | MS.gene26562:CDS | 10.0% |
| !!! | TAATTTTTTTTATGTTTGAT+TGG | - | chr4.1:22893926-22893945 | MS.gene26562:intron | 10.0% |
| !! | AAATTCAATATAAAACATCA+TGG | - | chr4.1:22894502-22894521 | MS.gene26562:CDS | 15.0% |
| !! | ATATTCTATTTAACTAAACA+TGG | - | chr4.1:22894417-22894436 | MS.gene26562:CDS | 15.0% |
| !! | TATTCTATTTAACTAAACAT+GGG | - | chr4.1:22894418-22894437 | MS.gene26562:CDS | 15.0% |
| !!! | AAAATCATTTGTTTTCTTTT+AGG | - | chr4.1:22894864-22894883 | MS.gene26562:intron | 15.0% |
| !!! | ATGATGTTTTATATTGAATT+TGG | + | chr4.1:22894503-22894522 | None:intergenic | 15.0% |
| !!! | GTTTATCTATTTATTGATTA+TGG | - | chr4.1:22893272-22893291 | MS.gene26562:CDS | 15.0% |
| !! | CCAATAATAGTTAGAAAAAA+TGG | + | chr4.1:22893682-22893701 | None:intergenic | 20.0% |
| !! | CTATCAATTGAAAATCATAT+CGG | + | chr4.1:22893538-22893557 | None:intergenic | 20.0% |
| !! | TACTGGTAATATATACAATA+AGG | - | chr4.1:22895272-22895291 | MS.gene26562:intron | 20.0% |
| !! | TCAACTAATAAACATATGTT+TGG | + | chr4.1:22893463-22893482 | None:intergenic | 20.0% |
| !! | TTCTATCATATCATATACTA+AGG | + | chr4.1:22893794-22893813 | None:intergenic | 20.0% |
| !!! | AAACTTCATTATGTAGTTTT+CGG | + | chr4.1:22893384-22893403 | None:intergenic | 20.0% |
| !!! | AAGTTGTAATAACTTGTAAT+GGG | - | chr4.1:22894548-22894567 | MS.gene26562:intron | 20.0% |
| !!! | CCATTTTTTCTAACTATTAT+TGG | - | chr4.1:22893679-22893698 | MS.gene26562:intron | 20.0% |
| !!! | TAAGTTGTAATAACTTGTAA+TGG | - | chr4.1:22894547-22894566 | MS.gene26562:intron | 20.0% |
| ! | AAAGTTCATCAAGTAAGAAA+AGG | - | chr4.1:22894015-22894034 | MS.gene26562:intron | 25.0% |
| ! | CAAAGAAAAATGAAGGAAAA+AGG | + | chr4.1:22895410-22895429 | None:intergenic | 25.0% |
| ! | CATATATATGATCCAATCAA+GGG | - | chr4.1:22894167-22894186 | MS.gene26562:intron | 25.0% |
| ! | TATCACTATTTATTGCTTGT+TGG | - | chr4.1:22893160-22893179 | MS.gene26562:intron | 25.0% |
| ! | TTTAGATTCAGATTGAGAAA+AGG | - | chr4.1:22894985-22895004 | MS.gene26562:intron | 25.0% |
| ! | TTTGAGCTATGGTATATATA+TGG | - | chr4.1:22893880-22893899 | MS.gene26562:intron | 25.0% |
| ! | TTTGGAAAACCCTAAAATTT+CGG | - | chr4.1:22893354-22893373 | MS.gene26562:intron | 25.0% |
| !! | AGTTGTAATAACTTGTAATG+GGG | - | chr4.1:22894549-22894568 | MS.gene26562:intron | 25.0% |
| !! | ATTTTCTACTTCTGTATTCT+AGG | - | chr4.1:22895142-22895161 | MS.gene26562:intron | 25.0% |
| !! | CGATATGATTTTCAATTGAT+AGG | - | chr4.1:22893536-22893555 | MS.gene26562:CDS | 25.0% |
| !! | TAATTCACATTTGTTGCAAT+CGG | + | chr4.1:22894912-22894931 | None:intergenic | 25.0% |
| !! | TTTTTCTTTGTCATGTGATT+TGG | - | chr4.1:22895420-22895439 | MS.gene26562:CDS | 25.0% |
| !!! | TATACTTGTCATGTTTTAGA+TGG | + | chr4.1:22895080-22895099 | None:intergenic | 25.0% |
| AAACATGTTACCATTAAGTG+TGG | + | chr4.1:22893848-22893867 | None:intergenic | 30.0% | |
| AATAATGTTACCTTGTGTAG+AGG | + | chr4.1:22894961-22894980 | None:intergenic | 30.0% | |
| AGAAGATAGAACTGAATAGA+AGG | + | chr4.1:22895331-22895350 | None:intergenic | 30.0% | |
| AGCTATGGTATATATATGGT+TGG | - | chr4.1:22893884-22893903 | MS.gene26562:intron | 30.0% | |
| ATCTCGTTAATGCATAAAGT+TGG | - | chr4.1:22894787-22894806 | MS.gene26562:intron | 30.0% | |
| CACATGACAAAGAAAAATGA+AGG | + | chr4.1:22895417-22895436 | None:intergenic | 30.0% | |
| CCATATATATGATCCAATCA+AGG | - | chr4.1:22894166-22894185 | MS.gene26562:intron | 30.0% | |
| CCTTGATTGGATCATATATA+TGG | + | chr4.1:22894169-22894188 | None:intergenic | 30.0% | |
| GAAGATAGAACTGAATAGAA+GGG | + | chr4.1:22895330-22895349 | None:intergenic | 30.0% | |
| TCACATACACTTCTGATTAA+AGG | + | chr4.1:22893230-22893249 | None:intergenic | 30.0% | |
| TCAGAGAAACAAGTAACATA+TGG | + | chr4.1:22894826-22894845 | None:intergenic | 30.0% | |
| TCCCATTAAAAAATTGGCTA+TGG | + | chr4.1:22894613-22894632 | None:intergenic | 30.0% | |
| TGACATGTTTGTGTTATGTT+TGG | - | chr4.1:22893705-22893724 | MS.gene26562:intron | 30.0% | |
| TTCATCAAGTAAGAAAAGGA+AGG | - | chr4.1:22894019-22894038 | MS.gene26562:intron | 30.0% | |
| TTTCGCTTCACATTCTTTAA+AGG | - | chr4.1:22895382-22895401 | MS.gene26562:intron | 30.0% | |
| ! | GTTGTAATAACTTGTAATGG+GGG | - | chr4.1:22894550-22894569 | MS.gene26562:intron | 30.0% |
| ! | TACCTTAGTAGAACAGTTTT+AGG | - | chr4.1:22894737-22894756 | MS.gene26562:intron | 30.0% |
| ! | TATACAATAAGGTTAGTCAC+AGG | - | chr4.1:22895283-22895302 | MS.gene26562:intron | 30.0% |
| ! | TGTTTCAGAATAAAGTGTCA+TGG | + | chr4.1:22894311-22894330 | None:intergenic | 30.0% |
| ! | TTACTAGTTTGCCAAAAGAA+AGG | - | chr4.1:22894383-22894402 | MS.gene26562:CDS | 30.0% |
| ! | TTCGGATAACCGAAATTTTA+GGG | + | chr4.1:22893366-22893385 | None:intergenic | 30.0% |
| ! | TTTCGGATAACCGAAATTTT+AGG | + | chr4.1:22893367-22893386 | None:intergenic | 30.0% |
| !! | TGACACTTTATTCTGAAACA+AGG | - | chr4.1:22894311-22894330 | MS.gene26562:CDS | 30.0% |
| !!! | GCCATAGCCAATTTTTTAAT+GGG | - | chr4.1:22894609-22894628 | MS.gene26562:intron | 30.0% |
| !!! | TGCCATAGCCAATTTTTTAA+TGG | - | chr4.1:22894608-22894627 | MS.gene26562:intron | 30.0% |
| !!! | TTGGTTCTATGCTTTTTAAG+TGG | - | chr4.1:22894711-22894730 | MS.gene26562:intron | 30.0% |
| AAAAATGGTTGGATGCATAC+TGG | - | chr4.1:22895255-22895274 | MS.gene26562:intron | 35.0% | |
| AACAAATGTGAATTACCCCA+AGG | - | chr4.1:22894917-22894936 | MS.gene26562:intron | 35.0% | |
| AAGTAAGAAAAGGAAGGAAG+TGG | - | chr4.1:22894025-22894044 | MS.gene26562:intron | 35.0% | |
| ACAAATCTGATGAAATCGTG+CGG | - | chr4.1:22893490-22893509 | MS.gene26562:intron | 35.0% | |
| ACAATAGTTAACTGGTGGTA+GGG | + | chr4.1:22893967-22893986 | None:intergenic | 35.0% | |
| AGAGATCTCTGGTATTTCTT+TGG | + | chr4.1:22895606-22895625 | None:intergenic | 35.0% | |
| ATGGGTGATATAAGATGCAA+TGG | - | chr4.1:22894436-22894455 | MS.gene26562:CDS | 35.0% | |
| ATGTTACCATTAAGTGTGGT+CGG | + | chr4.1:22893844-22893863 | None:intergenic | 35.0% | |
| CATAGAACCAATGTTGTCTA+TGG | + | chr4.1:22894702-22894721 | None:intergenic | 35.0% | |
| CCTTACAAACACAGATGAAA+AGG | + | chr4.1:22895487-22895506 | None:intergenic | 35.0% | |
| CTAAAAACCCTTCGATTCAT+AGG | + | chr4.1:22894276-22894295 | None:intergenic | 35.0% | |
| CTACTTCTGTATTCTAGGTA+TGG | - | chr4.1:22895147-22895166 | MS.gene26562:intron | 35.0% | |
| GATTGGGAATTGTATGTAGA+TGG | - | chr4.1:22894125-22894144 | MS.gene26562:intron | 35.0% | |
| GTATGTAGATGGATATGATG+AGG | - | chr4.1:22894136-22894155 | MS.gene26562:intron | 35.0% | |
| GTGGAAATTCATATACCAGA+AGG | - | chr4.1:22894044-22894063 | MS.gene26562:intron | 35.0% | |
| GTTTGCCAAAAGAAAGGAAA+AGG | - | chr4.1:22894389-22894408 | MS.gene26562:CDS | 35.0% | |
| GTTTGTAAGGTGACGAAATT+GGG | - | chr4.1:22895497-22895516 | MS.gene26562:CDS | 35.0% | |
| TAGATGGATATGATGAGGAT+GGG | - | chr4.1:22894141-22894160 | MS.gene26562:intron | 35.0% | |
| TCCAAACACATGATTTCATC+AGG | + | chr4.1:22893340-22893359 | None:intergenic | 35.0% | |
| TGCAAATTTCTCGACAAGAA+GGG | + | chr4.1:22895215-22895234 | None:intergenic | 35.0% | |
| TGCCTAAAACTGTTCTACTA+AGG | + | chr4.1:22894742-22894761 | None:intergenic | 35.0% | |
| TGGGTGATATAAGATGCAAT+GGG | - | chr4.1:22894437-22894456 | MS.gene26562:CDS | 35.0% | |
| TGTTTGTAAGGTGACGAAAT+TGG | - | chr4.1:22895496-22895515 | MS.gene26562:CDS | 35.0% | |
| TTGCAAATTTCTCGACAAGA+AGG | + | chr4.1:22895216-22895235 | None:intergenic | 35.0% | |
| TTGTCACAATAGTTAACTGG+TGG | + | chr4.1:22893972-22893991 | None:intergenic | 35.0% | |
| ! | CCTTTTCATCTGTGTTTGTA+AGG | - | chr4.1:22895484-22895503 | MS.gene26562:CDS | 35.0% |
| ! | CTTTGTCATGTGATTTGGAA+TGG | - | chr4.1:22895425-22895444 | MS.gene26562:CDS | 35.0% |
| ! | GCTACATCGATTAAACAATG+CGG | + | chr4.1:22893822-22893841 | None:intergenic | 35.0% |
| ! | GCTTTCCTTTTCCTTTCTTT+TGG | + | chr4.1:22894397-22894416 | None:intergenic | 35.0% |
| ! | TAACGAGGAGTTTTTCTTGA+CGG | + | chr4.1:22893050-22893069 | None:intergenic | 35.0% |
| !! | ATTCTGTGTTGTTTGAGCTA+TGG | - | chr4.1:22893869-22893888 | MS.gene26562:intron | 35.0% |
| !! | CTTGGTTTGTTAAAGCTTTC+TGG | - | chr4.1:22892992-22893011 | MS.gene26562:intron | 35.0% |
| AAACCATATAAGCACACCAG+TGG | + | chr4.1:22894659-22894678 | None:intergenic | 40.0% | |
| AATAGCTGCCGTAGGAAAAA+TGG | - | chr4.1:22895240-22895259 | MS.gene26562:intron | 40.0% | |
| AATGATTGAATGTAGCCACG+TGG | + | chr4.1:22893659-22893678 | None:intergenic | 40.0% | |
| AATGTGAATTACCCCAAGGA+CGG | - | chr4.1:22894921-22894940 | MS.gene26562:intron | 40.0% | |
| AGAACCAATGTTGTCTATGG+TGG | + | chr4.1:22894699-22894718 | None:intergenic | 40.0% | |
| AGAACGTCTTTCAGATTCGT+TGG | + | chr4.1:22893077-22893096 | None:intergenic | 40.0% | |
| AGATGGATATGATGAGGATG+GGG | - | chr4.1:22894142-22894161 | MS.gene26562:intron | 40.0% | |
| AGGAGATTGTGAGACTGATT+GGG | - | chr4.1:22894109-22894128 | MS.gene26562:intron | 40.0% | |
| ATCGCATTACGAACAGATTC+GGG | - | chr4.1:22892931-22892950 | MS.gene26562:CDS | 40.0% | |
| ATGATTGAATGTAGCCACGT+GGG | + | chr4.1:22893658-22893677 | None:intergenic | 40.0% | |
| CAAATCTGATGAAATCGTGC+GGG | - | chr4.1:22893491-22893510 | MS.gene26562:intron | 40.0% | |
| CACAATAGTTAACTGGTGGT+AGG | + | chr4.1:22893968-22893987 | None:intergenic | 40.0% | |
| CAGTTCTATCTTCTTCAGTG+TGG | - | chr4.1:22895337-22895356 | MS.gene26562:intron | 40.0% | |
| CATCGCATTACGAACAGATT+CGG | - | chr4.1:22892930-22892949 | MS.gene26562:CDS | 40.0% | |
| CGCTTGTCACAATAGTTAAC+TGG | + | chr4.1:22893975-22893994 | None:intergenic | 40.0% | |
| CGGGCATCCCATTAAAAAAT+TGG | + | chr4.1:22894619-22894638 | None:intergenic | 40.0% | |
| CTGAAAGACGTTCTTCTTCT+AGG | - | chr4.1:22893083-22893102 | MS.gene26562:intron | 40.0% | |
| GAGAGAAATGTCATCAATGC+GGG | - | chr4.1:22894189-22894208 | MS.gene26562:intron | 40.0% | |
| GCCTGATGAAATCATGTGTT+TGG | - | chr4.1:22893336-22893355 | MS.gene26562:intron | 40.0% | |
| GCTCTTCAGTGTAAACTTCA+GGG | + | chr4.1:22894076-22894095 | None:intergenic | 40.0% | |
| GGAGAGAAATGTCATCAATG+CGG | - | chr4.1:22894188-22894207 | MS.gene26562:intron | 40.0% | |
| GGGTGATATAAGATGCAATG+GGG | - | chr4.1:22894438-22894457 | MS.gene26562:CDS | 40.0% | |
| GGTGATATAAGATGCAATGG+GGG | - | chr4.1:22894439-22894458 | MS.gene26562:CDS | 40.0% | |
| GTAGATGGATATGATGAGGA+TGG | - | chr4.1:22894140-22894159 | MS.gene26562:intron | 40.0% | |
| TAGATGGAGTTAACTCATCG+AGG | + | chr4.1:22895064-22895083 | None:intergenic | 40.0% | |
| TAGGAGATTGTGAGACTGAT+TGG | - | chr4.1:22894108-22894127 | MS.gene26562:intron | 40.0% | |
| TCGGTCTCACTAAATGTATG+AGG | + | chr4.1:22893519-22893538 | None:intergenic | 40.0% | |
| TGACATTTCTCTCCCTTGAT+TGG | + | chr4.1:22894182-22894201 | None:intergenic | 40.0% | |
| TGCTCTTCAGTGTAAACTTC+AGG | + | chr4.1:22894077-22894096 | None:intergenic | 40.0% | |
| TGGAATGGAAGGCTAAGATA+TGG | - | chr4.1:22895440-22895459 | MS.gene26562:CDS | 40.0% | |
| TGTCATCAATGCGGGTATTA+TGG | - | chr4.1:22894197-22894216 | MS.gene26562:intron | 40.0% | |
| ! | GAAGAATCAGCTTCTGAAGA+TGG | - | chr4.1:22892839-22892858 | MS.gene26562:CDS | 40.0% |
| ! | GTCATGTGATTTGGAATGGA+AGG | - | chr4.1:22895429-22895448 | MS.gene26562:CDS | 40.0% |
| ! | TCTTTTAGGCGCTTAACTGT+TGG | - | chr4.1:22894878-22894897 | MS.gene26562:intron | 40.0% |
| ! | TGTGAAGTGTCAGTACTATC+AGG | + | chr4.1:22893600-22893619 | None:intergenic | 40.0% |
| !! | ATTGCTTGTTGGTGTTGTGT+TGG | - | chr4.1:22893171-22893190 | MS.gene26562:intron | 40.0% |
| !! | GCATCCAACCATTTTTCCTA+CGG | + | chr4.1:22895251-22895270 | None:intergenic | 40.0% |
| !!! | AGTTTTCGCCGTTTTGGTTT+CGG | + | chr4.1:22892876-22892895 | None:intergenic | 40.0% |
| !!! | ATGGCTTGGTGGATTTTAAG+AGG | - | chr4.1:22894471-22894490 | MS.gene26562:CDS | 40.0% |
| !!! | TGGTGGATTTTAAGAGGAGA+TGG | - | chr4.1:22894477-22894496 | MS.gene26562:CDS | 40.0% |
| AACCCTTCGATTCATAGGTG+AGG | + | chr4.1:22894271-22894290 | None:intergenic | 45.0% | |
| ACCAAAACGGCGAAAACTGA+CGG | - | chr4.1:22892878-22892897 | MS.gene26562:CDS | 45.0% | |
| ACCCTTCGATTCATAGGTGA+GGG | + | chr4.1:22894270-22894289 | None:intergenic | 45.0% | |
| ACGAACAGATTCGGGAACAA+AGG | - | chr4.1:22892939-22892958 | MS.gene26562:CDS | 45.0% | |
| ATGTAGCCGACCACACTTAA+TGG | - | chr4.1:22893835-22893854 | MS.gene26562:intron | 45.0% | |
| CCTTCCACCATAGACAACAT+TGG | - | chr4.1:22894692-22894711 | MS.gene26562:intron | 45.0% | |
| CGTCTTTCAGATTCGTTGGA+TGG | + | chr4.1:22893073-22893092 | None:intergenic | 45.0% | |
| CTTTCTTGACGCTCTGCTTT+AGG | + | chr4.1:22893999-22894018 | None:intergenic | 45.0% | |
| GCTGAGAGAATGCATAAGCT+TGG | - | chr4.1:22892974-22892993 | MS.gene26562:intron | 45.0% | |
| GTTGAATCTGGAGAGATCTC+TGG | + | chr4.1:22895617-22895636 | None:intergenic | 45.0% | |
| ! | AGATTCGTTGGATGGTAACG+AGG | + | chr4.1:22893065-22893084 | None:intergenic | 45.0% |
| ! | AGGAGTTTTTCTTGACGGAG+GGG | + | chr4.1:22893045-22893064 | None:intergenic | 45.0% |
| ! | CCAATGTTGTCTATGGTGGA+AGG | + | chr4.1:22894695-22894714 | None:intergenic | 45.0% |
| ! | CTCCAGATTCAACACTGACT+AGG | - | chr4.1:22895624-22895643 | MS.gene26562:CDS | 45.0% |
| ! | GAATCAGCTTCTGAAGATGG+CGG | - | chr4.1:22892842-22892861 | MS.gene26562:CDS | 45.0% |
| ! | GAGGAGTTTTTCTTGACGGA+GGG | + | chr4.1:22893046-22893065 | None:intergenic | 45.0% |
| ! | GTCCTAGTCAGTGTTGAATC+TGG | + | chr4.1:22895629-22895648 | None:intergenic | 45.0% |
| AAGCCAGCATCAATCCCAAG+TGG | - | chr4.1:22895184-22895203 | MS.gene26562:intron | 50.0% | |
| AATCTCCACAAAGCCGTCCT+TGG | + | chr4.1:22894937-22894956 | None:intergenic | 50.0% | |
| ACAAGAAGGGCAAGTCCACT+TGG | + | chr4.1:22895202-22895221 | None:intergenic | 50.0% | |
| ACTTCAGGGTTTGTGCCTTC+TGG | + | chr4.1:22894062-22894081 | None:intergenic | 50.0% | |
| AGTCCACTTGGGATTGATGC+TGG | + | chr4.1:22895190-22895209 | None:intergenic | 50.0% | |
| ATCTCCACAAAGCCGTCCTT+GGG | + | chr4.1:22894936-22894955 | None:intergenic | 50.0% | |
| CAAGAAGGGCAAGTCCACTT+GGG | + | chr4.1:22895201-22895220 | None:intergenic | 50.0% | |
| CATGCTTTCCTCAAAGCGAC+GGG | + | chr4.1:22895555-22895574 | None:intergenic | 50.0% | |
| CCACCACTGGTGTGCTTATA+TGG | - | chr4.1:22894653-22894672 | MS.gene26562:intron | 50.0% | |
| CCATATAAGCACACCAGTGG+TGG | + | chr4.1:22894656-22894675 | None:intergenic | 50.0% | |
| CCATGCTTTCCTCAAAGCGA+CGG | + | chr4.1:22895556-22895575 | None:intergenic | 50.0% | |
| GCCCTCACCTATGAATCGAA+GGG | - | chr4.1:22894266-22894285 | MS.gene26562:intron | 50.0% | |
| GCTGCCGTAGGAAAAATGGT+TGG | - | chr4.1:22895244-22895263 | MS.gene26562:intron | 50.0% | |
| GGACACTGAGTAGGCCAATT+CGG | - | chr4.1:22895645-22895664 | MS.gene26562:CDS | 50.0% | |
| GTGGAGATTGCCTCTACACA+AGG | - | chr4.1:22894948-22894967 | MS.gene26562:intron | 50.0% | |
| TAGGCCAATTCGGACGAGAA+GGG | - | chr4.1:22895655-22895674 | MS.gene26562:CDS | 50.0% | |
| TGCCCTCACCTATGAATCGA+AGG | - | chr4.1:22894265-22894284 | MS.gene26562:intron | 50.0% | |
| TTGAATGTAGCCACGTGGGT+TGG | + | chr4.1:22893654-22893673 | None:intergenic | 50.0% | |
| ! | ACCGTCAGTTTTCGCCGTTT+TGG | + | chr4.1:22892882-22892901 | None:intergenic | 50.0% |
| ! | CACTGACTAGGACACTGAGT+AGG | - | chr4.1:22895636-22895655 | MS.gene26562:CDS | 50.0% |
| ! | CGAGGAGTTTTTCTTGACGG+AGG | + | chr4.1:22893047-22893066 | None:intergenic | 50.0% |
| ! | GAAGAGCATGAGAAGCTGCT+AGG | - | chr4.1:22894089-22894108 | MS.gene26562:intron | 50.0% |
| ! | GAGGAAAGCATGGAAGGATC+AGG | - | chr4.1:22895563-22895582 | MS.gene26562:CDS | 50.0% |
| ! | GATTAAGACCCGTCGCTTTG+AGG | - | chr4.1:22895544-22895563 | MS.gene26562:CDS | 50.0% |
| ! | GTAATGGGGGCATGACAGAA+TGG | - | chr4.1:22894563-22894582 | MS.gene26562:intron | 50.0% |
| !! | CGCTTTGAGGAAAGCATGGA+AGG | - | chr4.1:22895557-22895576 | MS.gene26562:CDS | 50.0% |
| !! | GACGAAGGTGTTGTCGTTTC+AGG | - | chr4.1:22892902-22892921 | MS.gene26562:CDS | 50.0% |
| !!! | GCGGTGTTGGTGTTTTCTTG+AGG | + | chr4.1:22893021-22893040 | None:intergenic | 50.0% |
| !!! | TTTCGCCGTTTTGGTTTCGG+TGG | + | chr4.1:22892873-22892892 | None:intergenic | 50.0% |
| AGAGCCCTTCTCGTCCGAAT+TGG | + | chr4.1:22895662-22895681 | None:intergenic | 55.0% | |
| CGCCACCACCGAAACCAAAA+CGG | - | chr4.1:22892865-22892884 | MS.gene26562:CDS | 55.0% | |
| GACATTGACACCAACCCACG+TGG | - | chr4.1:22893641-22893660 | MS.gene26562:intron | 55.0% | |
| GCAACTGCAATAGCTGCCGT+AGG | - | chr4.1:22895232-22895251 | MS.gene26562:intron | 55.0% | |
| GCGAAAACTGACGGTGACGA+AGG | - | chr4.1:22892887-22892906 | MS.gene26562:CDS | 55.0% | |
| GTAGGCCAATTCGGACGAGA+AGG | - | chr4.1:22895654-22895673 | MS.gene26562:CDS | 55.0% | |
| TCTCCACAAAGCCGTCCTTG+GGG | + | chr4.1:22894935-22894954 | None:intergenic | 55.0% | |
| TTACCCCAAGGACGGCTTTG+TGG | - | chr4.1:22894929-22894948 | MS.gene26562:intron | 55.0% | |
| ! | GCAATGGGGGCATGACAGAA+TGG | - | chr4.1:22894452-22894471 | MS.gene26562:CDS | 55.0% |
| ! | GGCATGACAGAATGGCTTGG+TGG | - | chr4.1:22894460-22894479 | MS.gene26562:CDS | 55.0% |
| ! | TTTTTCTTGACGGAGGGGCG+CGG | + | chr4.1:22893040-22893059 | None:intergenic | 55.0% |
| !! | CCGTCGCTTTGAGGAAAGCA+TGG | - | chr4.1:22895553-22895572 | MS.gene26562:CDS | 55.0% |
| TAATGGGATGCCCGCCGTCA+TGG | - | chr4.1:22894625-22894644 | MS.gene26562:intron | 60.0% | |
| ! | GGGGGCATGACAGAATGGCT+TGG | - | chr4.1:22894457-22894476 | MS.gene26562:CDS | 60.0% |
| !!! | CGCCGTTTTGGTTTCGGTGG+TGG | + | chr4.1:22892870-22892889 | None:intergenic | 60.0% |
| !! | CAGTGGTGGTGCCGCCATGA+CGG | + | chr4.1:22894642-22894661 | None:intergenic | 65.0% |
| CGTCATGGCGGCACCACCAC+TGG | - | chr4.1:22894640-22894659 | MS.gene26562:intron | 70.0% | |
| TGGGATGCCCGCCGTCATGG+CGG | - | chr4.1:22894628-22894647 | MS.gene26562:intron | 70.0% | |
| ! | TTGACGGAGGGGCGCGGTGT+TGG | + | chr4.1:22893034-22893053 | None:intergenic | 70.0% |
| !! | TGGTGGTGCCGCCATGACGG+CGG | + | chr4.1:22894639-22894658 | None:intergenic | 70.0% |
| !! | GGTGGTGCCGCCATGACGGC+GGG | + | chr4.1:22894638-22894657 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22892806 | 22895691 | 22892806 | ID=MS.gene26562 |
| chr4.1 | mRNA | 22892806 | 22895691 | 22892806 | ID=MS.gene26562.t1;Parent=MS.gene26562 |
| chr4.1 | exon | 22895393 | 22895691 | 22895393 | ID=MS.gene26562.t1.exon1;Parent=MS.gene26562.t1 |
| chr4.1 | CDS | 22895393 | 22895691 | 22895393 | ID=cds.MS.gene26562.t1;Parent=MS.gene26562.t1 |
| chr4.1 | exon | 22894287 | 22894541 | 22894287 | ID=MS.gene26562.t1.exon2;Parent=MS.gene26562.t1 |
| chr4.1 | CDS | 22894287 | 22894541 | 22894287 | ID=cds.MS.gene26562.t1;Parent=MS.gene26562.t1 |
| chr4.1 | exon | 22893528 | 22893611 | 22893528 | ID=MS.gene26562.t1.exon3;Parent=MS.gene26562.t1 |
| chr4.1 | CDS | 22893528 | 22893611 | 22893528 | ID=cds.MS.gene26562.t1;Parent=MS.gene26562.t1 |
| chr4.1 | exon | 22893204 | 22893333 | 22893204 | ID=MS.gene26562.t1.exon4;Parent=MS.gene26562.t1 |
| chr4.1 | CDS | 22893204 | 22893333 | 22893204 | ID=cds.MS.gene26562.t1;Parent=MS.gene26562.t1 |
| chr4.1 | exon | 22892806 | 22892991 | 22892806 | ID=MS.gene26562.t1.exon5;Parent=MS.gene26562.t1 |
| chr4.1 | CDS | 22892806 | 22892991 | 22892806 | ID=cds.MS.gene26562.t1;Parent=MS.gene26562.t1 |
| Gene Sequence |
| Protein sequence |
